Citrus Sinensis ID: 037514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630------
Protein Sequence
MAGRNSTFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNFS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHHHccccccccccccccEEEccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccEEEccccccccccccccccccccccEEccccccccEEcccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHHcccccccEEEccccccEEEEEccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccccccccEEccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccEEEEEccccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHcccccccEEEccccccccccccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccHHHHHccccccEEEEccccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHcHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccccccccHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MAGRNSTFQLVVLLLVLLIKPLfltaigigsnydcgnfsiRCTEREREALLKFKglidpsarlsswkspipEFVYSLKKLklldlsessfsgmlppnignlsnlqYLDLSYQNLKEYQITKELWVSDliwlpdlsssrylhlegmklSKVTNWLQVVNELPSLVELHlsncqlnfpqslpflnftSLSILELSYdnfnsqipQWLFNISTLVTLNLRssqlsgsipkfppgkmcnlrrldlaingfsgEKEQFIQTLsgcnnstlETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFtmrsdwippfslrqmaindcqlgsafpswLKTQASVFKLTlsnaaisdtipdwfwGVISQKLSvidlsnnkffGGILSslcslpslywlrlggnnlsgelstslpdcsrltaldiggnrflqlpstsmgnlcnlhsldisyNHITGEIKELTNAFSACNVSTLETLDLasnklggnlpdsLGNLLCLEYlglsensflgslptsigNLSHLRALYLSFNVMSRIISenigqlsepymldlygnswegVITEKHfrnlsgldyltisssnsslvfnirhdwiapfnlytirggtrllvqglpkyvtspnfs
Flexible Loop (DISEMBL)
MAGRNSTFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKglidpsarlsswkspiPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLsgsipkfppgkmcNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTrllvqglpkyvtspnfs
Low Complexity Region (SEG)
MAGRNSTFQlvvlllvllIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYslkklklldlsessfsGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQnltklnslylsssnkslVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDslgnllcleylglsenSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNFS
Disordered region (IsUnstruct)
******TFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYV******
Disordered Region (DISOPRED)
********QLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNF*
Disordered Region (DISEMBL)
MAGRNSTFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNFS
Disordered Region (DISPRO)
****NSTFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNF*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRNSTFQLVVLLLVLLIKPLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	636	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.836	0.509	0.283	7e-35
O49318	1124	Probable leucine-rich rep	no	no	0.748	0.423	0.296	1e-33
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.767	0.442	0.295	4e-31
C0LGV1	1135	LRR receptor-like serine/	no	no	0.775	0.434	0.294	1e-30
Q9FL28	1173	LRR receptor-like serine/	no	no	0.797	0.432	0.291	1e-30
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.671	0.585	0.289	8e-30
Q9SYQ8	980	Receptor protein kinase C	no	no	0.707	0.459	0.286	1e-29
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.805	0.409	0.278	4e-29
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.779	0.416	0.272	1e-28
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.753	0.478	0.288	1e-28

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  149 bits (376), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 175/618 (28%), Positives = 268/618 (43%), Gaps = 86/618 (13%)

Query: 38  FSIRCTEREREALLKFKGLID---PSARLSSWKSP------------------------- 69
           F++  T  E  ALLK+K        S++LSSW +P                         
Sbjct: 42  FAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLT 101

Query: 70  -------IPEFVYS-LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITK 121
                    +F +S L  L  +DLS + FSG + P  G  S L+Y DLS   L   +I  
Sbjct: 102 NTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVG-EIPP 160

Query: 122 ELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181
           EL         DLS+   LHL   KL+   +    +  L  + E+ + +  L  P    F
Sbjct: 161 ELG--------DLSNLDTLHLVENKLNG--SIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query: 182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK-FPPGKMCNLRRLD 240
            N T L  L L  ++ +  IP  + N+  L  L L  + L+G IP  F  G + N+  L+
Sbjct: 211 GNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSF--GNLKNVTLLN 268

Query: 241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI 300
           +  N  SGE    I  ++  +  TL +L T ++ G I   +G +  L  L+LY N   G 
Sbjct: 269 MFENQLSGEIPPEIGNMTALD--TL-SLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGS 325

Query: 301 ITENHFQNLTKLNSLY-LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK-- 357
           I       L ++ S+  L  S   L   +   +    +L  + + D QL    P  +   
Sbjct: 326 IP----PELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANS 381

Query: 358 TQASVFKLTLSN--AAISDTI------------PDWFWGVISQKLS------VIDLSNNK 397
           T+ +V +L  +N    + DTI             + F G + + L        +    N 
Sbjct: 382 TELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNS 441

Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
           F G I  +    P+L ++ L  NN  G+LS +     +L A  +  N         + N+
Sbjct: 442 FSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNM 501

Query: 458 CNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517
             L  LD+S N ITGE+ E     S  N++ +  L L  N+L G +P  +  L  LEYL 
Sbjct: 502 TQLSQLDLSSNRITGELPE-----SISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLD 556

Query: 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE 577
           LS N F   +P ++ NL  L  + LS N + + I E + +LS+  MLDL  N  +G I+ 
Sbjct: 557 LSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISS 616

Query: 578 KHFRNLSGLDYLTISSSN 595
           + FR+L  L+ L +S +N
Sbjct: 617 Q-FRSLQNLERLDLSHNN 633

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 158/533 (29%), Positives = 239/533 (44%), Gaps = 57/533 (10%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           P+P  + +L KL      ++ FSG +P  IG   NL+ L L+ QN    ++ KE+ +   
Sbjct: 196 PLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLA-QNFISGELPKEIGML-- 252

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTS 186
                           +KL +V  W                  Q  F   +P    N TS
Sbjct: 253 ----------------VKLQEVILW------------------QNKFSGFIPKDIGNLTS 278

Query: 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           L  L L  ++    IP  + N+ +L  L L  +QL+G+IPK   GK+  +  +D + N  
Sbjct: 279 LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPK-ELGKLSKVMEIDFSENLL 337

Query: 247 SGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF 306
           SGE       LS  +   L  L   ++ G I   + +L  L  L+L  NS  G I    F
Sbjct: 338 SGE---IPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPG-F 393

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
           QNLT +  L L  ++ S V         P  +   + N  QL    P ++  Q+++  L 
Sbjct: 394 QNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSEN--QLSGKIPPFICQQSNLILLN 451

Query: 367 LSNAAISDTIPDWFWGVISQK-LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425
           L +  I   IP    GV+  K L  + +  N+  G   + LC L +L  + L  N  SG 
Sbjct: 452 LGSNRIFGNIPP---GVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGP 508

Query: 426 LSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN 485
           L   +  C +L  L +  N+F       +  L NL + ++S N +TG I          N
Sbjct: 509 LPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPS-----EIAN 563

Query: 486 VSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
              L+ LDL+ N   G+LP  LG+L  LE L LSEN F G++P +IGNL+HL  L +  N
Sbjct: 564 CKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGN 623

Query: 546 VMSRIISENIGQLSE-PYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597
           + S  I   +G LS     ++L  N + G I  +   NL  L YL++++++ S
Sbjct: 624 LFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPE-IGNLHLLMYLSLNNNHLS 675

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 168/568 (29%), Positives = 255/568 (44%), Gaps = 80/568 (14%)

Query: 83  LDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY--- 139
           L+LS    SG L P+IG L +L+ LDLSY  L   +I KE+     + +  L+++++   
Sbjct: 78  LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQFDGE 136

Query: 140 LHLEGMKLSKVTNWL----QVVNELPSLVELHLSNCQL-----NFPQSLP--FLNFTSLS 188
           + +E  KL  + N +    ++   LP  +   LS  QL     N    LP    N   L+
Sbjct: 137 IPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLT 196

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
                 +  +  +P  +    +LV L L  +QLSG +PK   G +  L ++ L  N FSG
Sbjct: 197 SFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPK-EIGMLKKLSQVILWENEFSG 255

Query: 249 EKEQFI-QTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENH 305
               FI + +S C  ++LETL     ++ G I + +G L  L  L LYRN   G I    
Sbjct: 256 ----FIPREISNC--TSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPR-E 308

Query: 306 FQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365
             NL+   ++ +  S  +L   +  +      L  + + + QL    P  L T  ++ KL
Sbjct: 309 IGNLSY--AIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKL 366

Query: 366 TLSNAAISDTIPDWFW----------------GVISQKLS------VIDLSNNKFFGGIL 403
            LS  A++  IP  F                 G I  KL       V+D+S+N   G I 
Sbjct: 367 DLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIP 426

Query: 404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL------------------------TAL 439
           S LC   ++  L LG NNLSG + T +  C  L                        TA+
Sbjct: 427 SYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAI 486

Query: 440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
           ++G NRF       +GN   L  L ++ N  TGE+           +S L TL+++SNKL
Sbjct: 487 ELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGM-----LSQLGTLNISSNKL 541

Query: 500 GGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS 559
            G +P  + N   L+ L +  N+F G+LP+ +G+L  L  L LS N +S  I   +G LS
Sbjct: 542 TGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLS 601

Query: 560 EPYMLDLYGNSWEGVITEKHFRNLSGLD 587
               L + GN + G I  +   +L+GL 
Sbjct: 602 RLTELQMGGNLFNGSIP-RELGSLTGLQ 628

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  135 bits (340), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 164/556 (29%), Positives = 257/556 (46%), Gaps = 63/556 (11%)

Query: 79  KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS-- 136
           +L ++DLS +S  G +P ++G L NLQ L L+   L   +I  EL   D + L +L    
Sbjct: 131 ELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTG-KIPPEL--GDCVSLKNLEIFD 187

Query: 137 ---SRYLHLEGMKLSKVTNWLQVVN-ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILEL 192
              S  L LE  K+S + +     N EL   +   + NC+             +L +L L
Sbjct: 188 NYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCR-------------NLKVLGL 234

Query: 193 SYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQ 252
           +    +  +P  L  +S L +L++ S+ LSG IPK   G    L  L L  N  SG    
Sbjct: 235 AATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPK-ELGNCSELINLFLYDNDLSG---T 290

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
             + L    N     L    ++G I E IG +  L A++L  N + G I ++ F NL+ L
Sbjct: 291 LPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKS-FGNLSNL 349

Query: 313 NSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI 372
             L LSS+N  +  ++ S       L Q  I+  Q+    P  +     +         +
Sbjct: 350 QELMLSSNN--ITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKL 407

Query: 373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD 432
              IPD   G   Q L  +DLS N   G + + L  L +L  L L  N +SG +   + +
Sbjct: 408 EGNIPDELAGC--QNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGN 465

Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK-ELTNA----------- 480
           C+ L  L +  NR        +G L NL  LD+S N+++G +  E++N            
Sbjct: 466 CTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNN 525

Query: 481 -------FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGN 533
                   S  +++ L+ LD++SN L G +PDSLG+L+ L  L LS+NSF G +P+S+G+
Sbjct: 526 TLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGH 585

Query: 534 LSHLRALYLSFNVMSRIISENIGQLSE-PYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
            ++L+ L LS N +S  I E +  + +    L+L  NS +G I E+            IS
Sbjct: 586 CTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPER------------IS 633

Query: 593 SSNSSLVFNIRHDWIA 608
           + N   V +I H+ ++
Sbjct: 634 ALNRLSVLDISHNMLS 649

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 170/583 (29%), Positives = 261/583 (44%), Gaps = 76/583 (13%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELW-VSDL 128
           IP  + +L  L  LDLS +  +G +P + GNL NLQ L L+ +NL E  I  E+   S L
Sbjct: 208 IPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLT-ENLLEGDIPAEIGNCSSL 266

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQV----------VNELPS-------LVELHLSNC 171
           + L    +     L G   +++ N +Q+           + +PS       L  L LS  
Sbjct: 267 VQLELYDN----QLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSEN 322

Query: 172 QLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPG 231
            L  P S       SL +L L  +NF  + PQ + N+  L  L +  + +SG +P    G
Sbjct: 323 HLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPA-DLG 381

Query: 232 KMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALN 291
            + NLR L    N  +G       ++S C    L  L   +M G I    G++  L  ++
Sbjct: 382 LLTNLRNLSAHDNLLTG---PIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM-NLTFIS 437

Query: 292 LYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351
           + RN + G I ++ F N + L +L ++ +N  L  T++        LR + ++   L   
Sbjct: 438 IGRNHFTGEIPDDIF-NCSNLETLSVADNN--LTGTLKPLIGKLQKLRILQVSYNSLTGP 494

Query: 352 FPSWLKTQASVFKLTLSNAAISDTIP----------------DWFWGVISQK------LS 389
            P  +     +  L L +   +  IP                +   G I ++      LS
Sbjct: 495 IPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLS 554

Query: 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL-Q 448
           V+DLSNNKF G I +    L SL +L L GN  +G +  SL   S L   DI  N     
Sbjct: 555 VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGT 614

Query: 449 LPSTSMGNLCNLH-SLDISYNHITGEI-KEL------------TNAFSACNVSTLE---- 490
           +P   + +L N+   L+ S N +TG I KEL             N FS     +L+    
Sbjct: 615 IPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKN 674

Query: 491 --TLDLASNKLGGNLPDSL-GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVM 547
             TLD + N L G++PD +   +  +  L LS NSF G +P S GN++HL +L LS N +
Sbjct: 675 VFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 548 SRIISENIGQLSEPYMLDLYGNSWEGVITEKH-FRNLSGLDYL 589
           +  I E++  LS    L L  N+ +G + E   F+N++  D +
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLM 777

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  132 bits (332), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 217/490 (44%), Gaps = 63/490 (12%)

Query: 65  SWKSPIPEFV-YSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKEL 123
           S+  PIP F+  S  +L  LD S + FSG +   +G    L  L   + NL    I  E+
Sbjct: 207 SFTGPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGRCLRLTVLQAGFNNLSGV-IPSEI 265

Query: 124 WVSDLIWLPDLSSSRYLHLEGMKLS-KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL 182
           +        +LS    L L   +L+ K+ N +  + +L SL  L+ ++ +   P  +   
Sbjct: 266 Y--------NLSELEQLFLPANQLTGKIDNNITRLRKLTSLA-LYSNHLEGEIPMDIG-- 314

Query: 183 NFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA 242
           N +SL  L+L  +N N  +P  L N + LV LNLR +QL G + +    ++ +L+ LDL 
Sbjct: 315 NLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLG 374

Query: 243 INGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIIT 302
            N F+G     I +   C + T       ++ G IS  + +L  L  + L  N    I  
Sbjct: 375 NNSFTGALPDKIFS---CKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITG 431

Query: 303 E-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF---SLRQMAINDCQLGSAFPSWLKT 358
             +  Q   KL++L L+ +        + D++ P     LR   +  C+L    P+WL  
Sbjct: 432 ALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWL-- 489

Query: 359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG 418
                                   +   K+ V+DLS N+F G I   L +LP L++L L 
Sbjct: 490 ------------------------INLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLS 525

Query: 419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLP-------STSMGNLCNLHSLD----ISY 467
            N L+GEL   L     L +  I  N +L+LP        T+      L+S      I  
Sbjct: 526 DNLLTGELPKELFQLRALMSQKITENNYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRR 585

Query: 468 NHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL 527
           N++TG I           +  L  L+L  N L G++PD L NL  LE L LS N+  GS+
Sbjct: 586 NNLTGSI-----PVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSI 640

Query: 528 PTSIGNLSHL 537
           P S+ NL+ L
Sbjct: 641 PWSLTNLNFL 650

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 228/479 (47%), Gaps = 29/479 (6%)

Query: 72  EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWL 131
           E + ++  L++LD   ++F+G LPP +  L  L+YL     N    +I +          
Sbjct: 138 EILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLSFG-GNFFSGEIPESYG------- 189

Query: 132 PDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTSLSI 189
            D+ S  YL L G  LS  +     ++ L +L E+++     ++   +P  F   T L I
Sbjct: 190 -DIQSLEYLGLNGAGLSGKSPAF--LSRLKNLREMYIGYYN-SYTGGVPPEFGGLTKLEI 245

Query: 190 LELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGE 249
           L+++      +IP  L N+  L TL L  + L+G IP    G + +L+ LDL+IN  +GE
Sbjct: 246 LDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSG-LVSLKSLDLSINQLTGE 304

Query: 250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNL 309
             Q    L    N TL  L    + G I E IG+L +L    ++ N++   +  N  +N 
Sbjct: 305 IPQSFINLG---NITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLPANLGRNG 361

Query: 310 TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSN 369
              N + L  S+  L   +  D      L  + +++       P  L    S+ K+ +  
Sbjct: 362 ---NLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIVK 418

Query: 370 AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTS 429
             ++ T+P   + +    +++I+L++N FF G L    S   L  + L  N  SGE+  +
Sbjct: 419 NLLNGTVPAGLFNL--PLVTIIELTDN-FFSGELPVTMSGDVLDQIYLSNNWFSGEIPPA 475

Query: 430 LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL 489
           + +   L  L +  NRF       +  L +L  ++ S N+ITG I +   + S C  STL
Sbjct: 476 IGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPD---SISRC--STL 530

Query: 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS 548
            ++DL+ N++ G +P  + N+  L  L +S N   GS+PT IGN++ L  L LSFN +S
Sbjct: 531 ISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLS 589

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 167/599 (27%), Positives = 261/599 (43%), Gaps = 87/599 (14%)

Query: 64  SSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKEL 123
           +S    IP  +  + +L+ L L  +   G++P ++ +L NLQ LDLS  NL   +I +E 
Sbjct: 249 NSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTG-EIPEEF 307

Query: 124 W----VSDLIW--------LPDLSSSRYLHLEGMKLSKVTNWLQVVNELP-------SLV 164
           W    + DL+         LP    S   +LE + LS      Q+  E+P       SL 
Sbjct: 308 WNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGT----QLSGEIPVELSKCQSLK 363

Query: 165 ELHLSNCQL--NFPQSLPFL----------------------NFTSLSILELSYDNFNSQ 200
           +L LSN  L  + P++L  L                      N T+L  L L ++N   +
Sbjct: 364 QLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGK 423

Query: 201 IPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI------ 254
           +P+ +  +  L  L L  ++ SG IP+   G   +L+ +D+  N F GE    I      
Sbjct: 424 LPKEISALRKLEVLFLYENRFSGEIPQ-EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKEL 482

Query: 255 ---------------QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKG 299
                           +L  C+   +  L   +++G+I  + G L  L  L LY NS +G
Sbjct: 483 NLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQG 542

Query: 300 IITEN--HFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK 357
            + ++    +NLT++N L  +  N ++     S     F +      D       P  L 
Sbjct: 543 NLPDSLISLRNLTRIN-LSHNRLNGTIHPLCGSSSYLSFDVTNNGFED-----EIPLELG 596

Query: 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRL 417
              ++ +L L    ++  IP W  G I ++LS++D+S+N   G I   L     L  + L
Sbjct: 597 NSQNLDRLRLGKNQLTGKIP-WTLGKI-RELSLLDMSSNALTGTIPLQLVLCKKLTHIDL 654

Query: 418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL 477
             N LSG +   L   S+L  L +  N+F++   T + N   L  L +  N + G I + 
Sbjct: 655 NNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQE 714

Query: 478 TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHL 537
                A NV     L+L  N+  G+LP ++G L  L  L LS NS  G +P  IG L  L
Sbjct: 715 IGNLGALNV-----LNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDL 769

Query: 538 R-ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           + AL LS+N  +  I   IG LS+   LDL  N   G +      ++  L YL +S +N
Sbjct: 770 QSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP-GSVGDMKSLGYLNVSFNN 827

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 171/628 (27%), Positives = 277/628 (44%), Gaps = 132/628 (21%)

Query: 71  PEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEY--QITKELWVSDL 128
           P F  SL  L  LD+S +S SG +PP IG LSNL  L   Y  L  +  QI  E  + ++
Sbjct: 155 PSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNL---YMGLNSFSGQIPSE--IGNI 209

Query: 129 IWLPDLSS-------------SRYLHLEGMKLS-------------KVTNWLQVVN---- 158
             L + ++             S+  HL  + LS             ++ N L ++N    
Sbjct: 210 SLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHN-LSILNLVSA 268

Query: 159 ELPSLVELHLSNCQ-----------LNFP-----QSLPFLNFTS---------------- 186
           EL  L+   L NC+           L+ P       +P L F++                
Sbjct: 269 ELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKW 328

Query: 187 --LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC---NLRRLDL 241
             L  L L+ + F+ +IP  + +   L  L+L S+ LSGSIP+    ++C   +L  +DL
Sbjct: 329 KVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPR----ELCGSGSLEAIDL 384

Query: 242 AINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGII 301
           + N  SG  E+      GC++     L   ++NG+I E++ +L  L+AL+L  N++ G I
Sbjct: 385 SGNLLSGTIEE---VFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEI 440

Query: 302 TENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361
            ++ +++    N +  ++S   L   + ++     SL+++ ++D QL    P  +    S
Sbjct: 441 PKSLWKST---NLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTS 497

Query: 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
           +  L L+       IP       S  L+ +DL +N   G I   + +L  L  L L  NN
Sbjct: 498 LSVLNLNANMFQGKIPVELGDCTS--LTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555

Query: 422 LSGELST---------SLPD---------------------------CSRLTALDIGGNR 445
           LSG + +          +PD                           C  L  + +  N 
Sbjct: 556 LSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNH 615

Query: 446 FLQLPSTSMGNLCNLHSLDISYNHITGEI-KELTNAFSACNVSTLETLDLASNKLGGNLP 504
                  S+  L NL  LD+S N +TG I KE+ N+        L+ L+LA+N+L G++P
Sbjct: 616 LSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLK------LQGLNLANNQLNGHIP 669

Query: 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYML 564
           +S G L  L  L L++N   G +P S+GNL  L  + LSFN +S  +S  +  + +   L
Sbjct: 670 ESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGL 729

Query: 565 DLYGNSWEGVITEKHFRNLSGLDYLTIS 592
            +  N + G I  +   NL+ L+YL +S
Sbjct: 730 YIEQNKFTGEIPSE-LGNLTQLEYLDVS 756

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 241/526 (45%), Gaps = 47/526 (8%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGN-LSNLQYLDLSYQNLKEYQITKELWVSD 127
           PIP  + +L +L+ L+LS + F+G  P  + + L NL+ LDL   NL     T +L VS 
Sbjct: 108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNL-----TGDLPVS- 161

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSL 187
              L +L+  R+LHL G   S            P L  L +S  +L         N T+L
Sbjct: 162 ---LTNLTQLRHLHLGGNYFSG--KIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTL 216

Query: 188 SILELSYDN-FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
             L + Y N F + +P  + N+S LV  +  +  L+G IP    GK+  L  L L +N F
Sbjct: 217 RELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPP-EIGKLQKLDTLFLQVNAF 275

Query: 247 SGEKEQFI---------------------QTLSGCNNSTLETLETQRMNGTISENIGQLA 285
           +G   Q +                      + S   N TL  L   ++ G I E IG++ 
Sbjct: 276 TGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMP 335

Query: 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND 345
           EL  L L+ N++ G I +   +N  +L  L LSS+   L  T+  +      L  +    
Sbjct: 336 ELEVLQLWENNFTGSIPQKLGEN-GRLVILDLSSNK--LTGTLPPNMCSGNRLMTLITLG 392

Query: 346 CQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGI-LS 404
             L  + P  L    S+ ++ +    ++ +IP   +G+   KLS ++L +N   G + +S
Sbjct: 393 NFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGL--PKLSQVELQDNYLTGELPIS 450

Query: 405 SLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD 464
                  L  + L  N LSG L  ++ + S +  L + GN+F       +G L  L  LD
Sbjct: 451 GGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLD 510

Query: 465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL 524
            S+N  +G I       S C + T   +DL+ N+L G++P+ L  +  L YL LS N  +
Sbjct: 511 FSHNLFSGRIAP---EISRCKLLTF--VDLSRNELSGDIPNELTGMKILNYLNLSRNHLV 565

Query: 525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
           GS+P +I ++  L ++  S+N +S ++  + GQ S        GNS
Sbjct: 566 GSIPVTIASMQSLTSVDFSYNNLSGLVP-STGQFSYFNYTSFVGNS 610

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
255547760	987	serine/threonine-protein kinase bri1, pu	0.801	0.516	0.411	2e-92
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.808	0.519	0.382	3e-85
147789266	925	hypothetical protein VITISV_040339 [Viti	0.805	0.553	0.379	3e-85
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.759	0.504	0.390	2e-84
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.748	0.485	0.378	2e-78
359473600	968	PREDICTED: leucine-rich repeat receptor	0.831	0.546	0.356	4e-78
225424730	969	PREDICTED: leucine-rich repeat receptor	0.867	0.569	0.335	4e-77
359473584	996	PREDICTED: LRR receptor-like serine/thre	0.855	0.546	0.354	5e-77
255547440	899	serine-threonine protein kinase, plant-t	0.751	0.531	0.383	2e-76
147822632	969	hypothetical protein VITISV_026260 [Viti	0.809	0.531	0.378	4e-76

>gi|255547760|ref|XP_002514937.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545988|gb|EEF47491.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 239/581 (41%), Positives = 326/581 (56%), Gaps = 71/581 (12%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
           + IPEF+ SLK L+ LDLS++SFSG++PP++GNLSNL +LDL+      Y     LWVSD
Sbjct: 136 AAIPEFIGSLKNLRYLDLSQASFSGLVPPHLGNLSNLIHLDLT-----TYWNPTPLWVSD 190

Query: 128 LIWLPDLSSSRYLHLEGMKLSKV-TNWLQVVNELPSLVELHL-SNCQLNFPQSLPFLNFT 185
           + WL  L   +YL L  + LSK  T WLQ +N LP+L+ELHL SN    F QSLP +NFT
Sbjct: 191 INWLSGLPFLQYLGLGRVDLSKASTKWLQAINMLPALLELHLYSNKLQGFSQSLPLVNFT 250

Query: 186 SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING 245
           SL + +++Y+NF+S IPQW+FNIST+VT+ L   Q SG IP+   G +CNL+RLDL+ N 
Sbjct: 251 SLLVFDVTYNNFSSPIPQWVFNISTVVTVQLYDCQFSGHIPEISWGSLCNLKRLDLSSNS 310

Query: 246 FSGEKEQFIQTLSGCNNSTLETLET----------------------------------- 270
            +G+ ++FI  L+GCNN++LE+L+                                    
Sbjct: 311 LTGQIKEFIDALTGCNNNSLESLDLSSNNLMGNLPDSLGSLSNLETLGLYQNSFSGLLPE 370

Query: 271 ---------------QRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315
                           +M G + E IGQL+ L  L LY NSW+GI+TE H  NLT+L+  
Sbjct: 371 SIGNLSSLSALDMSFNKMTGNVPETIGQLSRLYKLGLYGNSWEGIMTEIHLHNLTRLDDF 430

Query: 316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDT 375
            LSS+   L+F +R DW P F+L  + I+DCQ+G  FP WLKTQ  + ++TLSNAAISDT
Sbjct: 431 SLSSTTYYLIFNVRPDWTPLFNLTYLTIDDCQVGPTFPPWLKTQNQISQITLSNAAISDT 490

Query: 376 IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPS--LYWLRLGGNNLSGELSTSLPDC 433
           IP WFW  +S  +  +DLS N+   G L  L S+ +    W+ LG N L G    S+P  
Sbjct: 491 IPAWFW-TLSPNIWWLDLSVNQ-LRGTLPVLTSIGNNLGAWVDLGFNRLDG----SVPLW 544

Query: 434 SRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492
           S +T L +  N     +PS     +  L +LD+S N + G I +     S   +  L  L
Sbjct: 545 SNVTNLSLRYNLLSGSIPSKIGQVMSRLENLDLSNNLLNGSIPQ-----SISRLERLYFL 599

Query: 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS 552
           DL+SN L GN+P +   L  L  L LS NS  G +P SI  L  L  L LS N +S  +S
Sbjct: 600 DLSSNYLSGNIPSNWQGLKMLMVLDLSNNSLSGEVPNSICLLPSLIFLKLSSNNLSGELS 659

Query: 553 ENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
             +   +  Y LDL  N + G I+     NL  L Y+ + +
Sbjct: 660 STVQNCTGLYSLDLGYNRFTGTISAWIADNLLALSYIGLRA 700

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 332/628 (52%), Gaps = 114/628 (18%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           IP+F+ SL KL+ L+LS +SF GM+PPNI NLSNL+YLDL+  +++  +       + L 
Sbjct: 132 IPKFIGSLGKLRYLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNK-------NGLE 184

Query: 130 WLPDLSSSRYLHLEGMKLSKVTN-WLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
           WL  LSS +YL+L G+ LS+    WLQ +N LPSL+ELH+ NCQL NF  SLPFLNFTSL
Sbjct: 185 WLSGLSSLKYLNLGGIDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSL 244

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIP--------------------- 226
           SIL+LS + F+S IP WLFN+S+LV L+L S+ L G +P                     
Sbjct: 245 SILDLSNNEFDSTIPHWLFNLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSQNSNIE 304

Query: 227 -KFPP--GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-------------- 269
            +FP   G +C LR L L++N  SGE  +F+  LS C+ STLE L+              
Sbjct: 305 GEFPRTLGNLCCLRTLILSVNKLSGEITEFLDGLSACSYSTLENLDLGFNELTGNLPDSL 364

Query: 270 ------------------------------------TQRMNGTISENIGQLAELVALNLY 293
                                                 +M G I +++GQL+ LV L L 
Sbjct: 365 GHLKNLRYLQLRSNSFSGSIPESIGRLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELN 424

Query: 294 RNSWKGIITENHFQNLTKLNSLYL--SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351
            NSW+G+ITE HF NL+ L  L +  SS N SLVF + SDW PPF L  + +  CQLG  
Sbjct: 425 GNSWEGVITEAHFANLSSLKQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPK 484

Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC---- 407
           FP+WL++Q  +  + L+NA IS TIPDW W  ++ +L  +D++ N+  G + +SL     
Sbjct: 485 FPTWLRSQNELTTVVLNNARISGTIPDWLWK-LNLQLRELDIAYNQLSGRVPNSLVFSYL 543

Query: 408 ----------SLPSLYW------LRLGGNNLSGELSTSLPDCSR-LTALDIGGNRFLQLP 450
                       P   W      L L  N  SG +  ++      LT LDI  N      
Sbjct: 544 ANVDLSSNLFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSI 603

Query: 451 STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNL 510
             SMGNL  L +L IS N+++GEI +  N      + +L  +D+++N L G +P SLG+L
Sbjct: 604 PWSMGNLQALITLVISNNNLSGEIPQFWNK-----MPSLYIIDMSNNSLSGTIPRSLGSL 658

Query: 511 LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ-LSEPYMLDLYGN 569
             L +L LS+N+  G LP+ + N S L +L L  N  S  I   IG+ +S   +L L  N
Sbjct: 659 TALRFLVLSDNNLSGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRSN 718

Query: 570 SWEGVITEKHFRNLSGLDYLTISSSNSS 597
            + G I  +    LS L  L +S +N S
Sbjct: 719 FFSGKIPSE-ICALSALHILDLSHNNVS 745

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera]

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 239/630 (37%), Positives = 331/630 (52%), Gaps = 118/630 (18%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           IP+F+ SL KL+ L+LS +SF GM+PPNI NLSNL+YLDL+  +++  +       + L 
Sbjct: 67  IPKFIGSLGKLRYLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNK-------NGLE 119

Query: 130 WLPDLSSSRYLHLEGMKLSKVTN-WLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
           WL  LSS +YL+L G+ LS+    WLQ +N LPSL+ELH+ NCQL NF  SLPFLNFTSL
Sbjct: 120 WLSGLSSLKYLNLGGIDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSL 179

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIP--------------------- 226
           SIL+LS + F+S IP WLFN+ +LV L+L S+ L G +P                     
Sbjct: 180 SILDLSNNEFDSTIPHWLFNLXSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSQNSNIE 239

Query: 227 -KFPP--GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-------------- 269
            +FP   G +C LR L L++N  SGE  +F+  LS C+ STLE L+              
Sbjct: 240 GEFPRTLGNLCXLRTLILSVNKLSGEITEFLDGLSACSYSTLENLDLGFNELTGNLPDSL 299

Query: 270 ------------------------------------TQRMNGTISENIGQLAELVALNLY 293
                                                 +M G I +++GQL+ LV L L 
Sbjct: 300 GHLKNLRYLQLRSNSFSGSIPESIGXLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELN 359

Query: 294 RNSWKGIITENHFQNLTKLNSLYL--SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351
            NSW+G+ITE HF NL+ L  L +  SS N SLVF + SDW PPF L  + +  CQLG  
Sbjct: 360 GNSWEGVITEAHFANLSSLXQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPK 419

Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFW----------------------GVISQKLS 389
           FP+WL++Q  +  + L+NA IS TIPDW W                       ++   L+
Sbjct: 420 FPTWLRSQNELTTVVLNNARISGTIPDWLWKLDLQLRELDIAYNQLSGRVPNSLVFSYLA 479

Query: 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR-LTALDIGGNRFLQ 448
            +DLS+N F G +     ++ +LY   L  N  SG +  ++      LT LDI  N    
Sbjct: 480 NVDLSSNLFDGPLPLWSSNVSTLY---LRDNLFSGPIPQNIAQVMPILTDLDISRNSLNG 536

Query: 449 LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG 508
               SMGNL  L +L IS N+++GEI +  N      + +L  +D+++N L G +P SLG
Sbjct: 537 SIPLSMGNLQALITLVISNNNLSGEIPQFWNK-----MPSLYIVDMSNNSLSGTIPKSLG 591

Query: 509 NLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ-LSEPYMLDLY 567
           +L  L +L LS+N+  G LP+ + N S L +L L  N  S  I   IG+ +S   +L L 
Sbjct: 592 SLTALRFLVLSDNNLSGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALR 651

Query: 568 GNSWEGVITEKHFRNLSGLDYLTISSSNSS 597
            N + G I  +    LS L  L +S +N S
Sbjct: 652 SNFFSGKIPSE-ICALSALHILDLSHNNVS 680

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 317/596 (53%), Gaps = 113/596 (18%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           IP+F+ SL+KL+ L+LS +SF G++PPNI NLSNL+YLDL+  +++  +       + L 
Sbjct: 99  IPKFIGSLRKLRYLNLSGASFGGIIPPNIANLSNLRYLDLNTYSIEPNK-------NGLE 151

Query: 130 WLPDLSSSRYLHLEGMKLSKVTN-WLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
           WL  LSS +YL+L G+ LSK    WLQ VN LPSL+ELH+ NCQL N   SLPFLNFTSL
Sbjct: 152 WLSGLSSLKYLNLGGIDLSKAAAYWLQTVNTLPSLLELHMPNCQLSNLSLSLPFLNFTSL 211

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIP--------------------- 226
           SIL+LS + F+S IP WLFN+S+LV L+L S+ L G +P                     
Sbjct: 212 SILDLSNNGFDSTIPHWLFNLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSKNSNIE 271

Query: 227 -KFPP--GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-------------- 269
            + P   G +C LR L L++N  SGE  +F+  LS C+ STLE L+              
Sbjct: 272 GELPRTLGNLCYLRTLILSVNKLSGEIAEFLDGLSACSYSTLENLDLGFNKLTGNLPDSL 331

Query: 270 ------------------------------------TQRMNGTISENIGQLAELVALNLY 293
                                                 +M G I +++GQL+ LV L L 
Sbjct: 332 GHLKNLRYLQLWSNSFRGSIPESIGSLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELN 391

Query: 294 RNSWKGIITENHFQNLTKLNSLYL--SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351
            NSW+G+ITE HF NL+ L  L +  SS N SLVF + SDW PPF L  + +  CQLG  
Sbjct: 392 ENSWEGVITEAHFANLSSLKQLSITKSSPNVSLVFNISSDWAPPFKLTYINLRSCQLGPK 451

Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC---- 407
           FP+WL+TQ  +  + L+NA IS TIPDW W +  Q LS +D++ N+  G + +SL     
Sbjct: 452 FPTWLRTQNELTTIVLNNAGISGTIPDWLWKLDLQ-LSELDIAYNQLSGRVPNSLVFSYL 510

Query: 408 ----------SLPSLYW------LRLGGNNLSGELSTSLPDCSR-LTALDIGGNRFLQLP 450
                       P   W      L L GN  SG +  ++      LT LDI  N      
Sbjct: 511 ANVDLSSNLFDGPLPLWSSNVSTLYLRGNLFSGPIPQNIGQVMPILTDLDISWNSLNGSI 570

Query: 451 STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNL 510
             SMG+L  L +L IS N+++GEI +  N      + +L  +D+++N L G +P SLG+L
Sbjct: 571 PLSMGDLQALITLVISNNNLSGEIPQFWNK-----MPSLYIVDMSNNSLSGTIPRSLGSL 625

Query: 511 LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566
             L +L LS N+  G LP+ + N S L +L L  N  S  I   IG+ S P +L L
Sbjct: 626 TALRFLVLSNNNLSGELPSQLQNCSVLESLDLGDNKFSGNIPSWIGE-SMPSLLIL 680

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 296/578 (51%), Gaps = 102/578 (17%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
           +PIP+F+ SL+KL+ L+LS +SF G +PP +GNLS+L YLDL     KEY    E   +D
Sbjct: 128 TPIPKFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDL-----KEY--FDESNQND 180

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTN-WLQVVNELPSLVELHLSNCQL-NFPQSLPFLNF- 184
           L W+  L+S R+L+L G+ LS+    WLQ V++LPSL ELHL  C L + P SLPF N  
Sbjct: 181 LHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPSLPFSNLI 240

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSI-PKFPPG----------KM 233
           TSLSI++LS + FNS IP WLF +  LV L+L S+ L GSI   F  G           +
Sbjct: 241 TSLSIIDLSNNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDAFANGTSIERLRNMGSL 300

Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE------------------------ 269
           CNL+ L L+ N  +GE  + I  LSGCN+S LETL+                        
Sbjct: 301 CNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGFNDLGGFLPNSLGKLHNLKSLW 360

Query: 270 --------------------------TQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
                                        MNGTI E +G+L++LVA+ L  N   G++TE
Sbjct: 361 LWDNSFVGSIPSSIGNLSYLEELYLSDNSMNGTIPETLGRLSKLVAIELSENPLTGVVTE 420

Query: 304 NHFQNLTKLNSL--YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361
            HF NLT L     Y  +   SLVF +  +WIPPF L  + I  CQLG  FP+WL+ Q  
Sbjct: 421 AHFSNLTSLKEFSNYRGTPRVSLVFNINPEWIPPFKLSLLRIRSCQLGPKFPAWLRNQTE 480

Query: 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
           +  + L+NA ISD+IP WFW  +   L  +D+ +N   G + +S+  LP    + L  NN
Sbjct: 481 LTDVVLNNAGISDSIPKWFW-KLDLHLDELDIGSNNLGGRVPNSMKFLPE-STVDLSENN 538

Query: 422 LSGEL-----------------STSLP-----DCSRLTALDIGGNRFLQLPSTSMGNLCN 459
             G L                 S+ +P       S +T LD+  N        S G L N
Sbjct: 539 FQGPLPLWSSNVTKLYLNDNFFSSHIPLEYGERMSMVTDLDLSNNDLNGTIPLSFGKLNN 598

Query: 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLS 519
           L +L IS NH +G I E  N      V TL  +D+ +N L G LP S+G+L  L +L +S
Sbjct: 599 LLTLVISNNHFSGGIPEFWNG-----VPTLYAIDMDNNNLSGELPSSMGSLRFLGFLMIS 653

Query: 520 ENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ 557
            N   G LP+++ N S +  L L  N  S  +   IG+
Sbjct: 654 NNHLSGQLPSALQNCSGIHTLDLGGNRFSGNVPAWIGE 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473600|ref|XP_002272516.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 244/685 (35%), Positives = 344/685 (50%), Gaps = 156/685 (22%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLS--YQNLKEYQITKELWVS 126
           PIP F+ S ++L+ L+LS ++F GM+PP++GNLS L+YLDL+  Y NL   +      V 
Sbjct: 99  PIPNFMGSFERLRYLNLSNAAFGGMIPPHLGNLSQLRYLDLNGGYVNLNPMR------VH 152

Query: 127 DLIWLPDLSSSRYLHLEGMKLSKVT-NWLQVVNELPSLVELHLSNCQL-NFPQ-SLPFLN 183
           +L WL  LSS +YL L  + LSK T NW+Q VN LP L+ELHLSNC+L +FPQ S PF+N
Sbjct: 153 NLNWLSGLSSLKYLDLGYVNLSKATTNWMQAVNMLPFLLELHLSNCELSHFPQYSNPFVN 212

Query: 184 FTSLSILELSYDNFNSQIPQWLFNIST-------------------------LVTL---- 214
            TS S+++LSY+NFN+ +P WLFNIST                         LVTL    
Sbjct: 213 LTSASVIDLSYNNFNTTLPGWLFNISTLMDLYLNDATIKGPIPHVNLRCLCNLVTLDLSY 272

Query: 215 -------------------------NLRSSQLSGSIPK---------------------F 228
                                    NL  +Q+SG +P                      F
Sbjct: 273 NNIGSEGIELVNGLSGCANSSLEELNLGGNQVSGQLPDSLGLFKNLKSLYLWYNNFVGPF 332

Query: 229 PPG--KMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAE 286
           P     + NL RLDL++N  SG    +I  L       L+ L    MNGTI ++I QL E
Sbjct: 333 PNSIQHLTNLERLDLSVNSISGPIPTWIGNL--LRMKRLD-LSNNLMNGTIPKSIEQLRE 389

Query: 287 LVALNLYRNSWKGIITENHFQNLTKLN--SLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
           L  LNL  N+W+G+I+E HF NLTKL   SL +S  N+SL F +R +WIPPFSL+ + + 
Sbjct: 390 LTELNLNWNAWEGVISEIHFSNLTKLTDFSLLVSPKNQSLRFHLRPEWIPPFSLKFIEVY 449

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILS 404
           +C +   FP+WL+TQ  +F + L N  ISD IP+W W    Q    ++LS N+ +G + +
Sbjct: 450 NCYVSLKFPNWLRTQKRLFYVILKNVGISDAIPEWLW---KQDFLRLELSRNQLYGTLPN 506

Query: 405 SLC----SLPSLYWLRLG--------------GNNL-SGELSTSLPDCSRLTALDIGGNR 445
           SL     ++  L + RLG              GNNL SG +  ++ + S L  LD+ GN 
Sbjct: 507 SLSFRQGAMVDLSFNRLGGPLPLRLNVGSLYLGNNLFSGPIPLNIGELSSLEVLDVSGNL 566

Query: 446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD 505
                 +S+  L +L  +D+S NH++G+I +  N     ++  L T+DL+ NKL G +P 
Sbjct: 567 LNGSIPSSISKLKDLEVIDLSNNHLSGKIPKNWN-----DLHRLWTIDLSKNKLSGGIPS 621

Query: 506 ------------------------SLGNLLCLEYLGLSENSFLGSLPTSIGN-LSHLRAL 540
                                   SL N   L+ L L  N F G +P  IG  +  L  L
Sbjct: 622 WMSSKSSLEQLILGDNNLSGEPFPSLRNCTRLQALDLGNNRFSGEIPKWIGERMPSLEQL 681

Query: 541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF 600
            L  N++   I E +  LS  ++LDL  N+  G I +    NL+ L ++T+   N    F
Sbjct: 682 RLRGNMLIGDIPEQLCWLSNLHILDLAVNNLSGFIPQC-LGNLTALSFVTLLDRN----F 736

Query: 601 NIRHDWIAPFNLYTIRGGTRLLVQG 625
           N       PFN Y+      L+V+G
Sbjct: 737 N------DPFNHYSYSEHMELVVKG 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424730|ref|XP_002265946.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS [Vitis vinifera]

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 238/710 (33%), Positives = 338/710 (47%), Gaps = 158/710 (22%)

Query: 36  GNFSIRCTEREREALLKFK-GLIDPSARLSS--------WKS------------------ 68
           G  +  C E ER+ALL+FK GL +PS  LSS        WK                   
Sbjct: 35  GGMNKGCIEVERKALLEFKNGLKEPSRTLSSWVGADCCKWKGVDCNNQTGHVVKVDLKYG 94

Query: 69  -----------------------------PIPEFVYSLKKLKLLDLSESSFSGMLPPNIG 99
                                        PIP F+ S ++L+ L+LS ++F GM+PP++G
Sbjct: 95  GLGGEISDSLLDLKHLNYLDLSFNDFQGIPIPNFLGSFERLRYLNLSHAAFGGMIPPHLG 154

Query: 100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT-NWLQVVN 158
           NLS L YLDLS      Y     + V +L WL  LSS +YL L  + LSK T NW+Q VN
Sbjct: 155 NLSQLCYLDLSGD---YYSRAPLMRVHNLNWLSGLSSLKYLDLGNVNLSKATTNWMQAVN 211

Query: 159 ELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTL--- 214
            LP L+ELHLS+C+L +FP S+ F+N TSL +++LS++N ++  P WLFNISTL  L   
Sbjct: 212 MLPFLLELHLSHCELGDFPHSISFVNLTSLLVIDLSHNNLSTTFPGWLFNISTLTDLYLN 271

Query: 215 --------------------------NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
                                     +L  ++  G +P    G   NL+ LDL+ N F G
Sbjct: 272 DASIGSEGIELVNGLSTCANNSLERLHLGGNRFGGQLPD-SLGLFKNLKSLDLSYNSFVG 330

Query: 249 EKEQFIQTLSGCNNSTLET--------------LETQR-------MNGTISENIGQLAEL 287
                IQ L+   +  L                L  +R       MNGTI ++IGQL EL
Sbjct: 331 PFPNSIQHLTNLESLNLRENSISGPIPTWIGNLLRMKRLDLSNNLMNGTIPKSIGQLREL 390

Query: 288 VALNLYRNSWKGIITENHFQNLTKLN--SLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND 345
             L L  NSW+G+++E HF NLTKL   S +LS + +S  F +R +WIPPFSL  + I++
Sbjct: 391 TVLYLNWNSWEGVMSEIHFSNLTKLEYFSSHLSPTKQSFRFHVRPEWIPPFSLMSIDISN 450

Query: 346 CQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSS 405
           C +   FP+W++TQ  +  +TL N  ISDTIP+W W +       +DLS N+ +G + +S
Sbjct: 451 CNVSLKFPNWIRTQKRLHFITLKNVGISDTIPEWLWKLY---FLWLDLSRNQLYGKLPNS 507

Query: 406 LCSLPS--------------------LYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445
           L   P+                      WL LG N+ SG +  ++ D S L  LD+  N 
Sbjct: 508 LSFSPASVLVDLSFNRLVGRLPLWFNATWLFLGNNSFSGPIPLNIGDLSSLEVLDVSSNL 567

Query: 446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKE-------------LTNAFSA------CNV 486
                 +SM  L +L  +D+S N ++G+I +               N  S       C+ 
Sbjct: 568 LNGSIPSSMSKLKDLRVIDLSNNQLSGKIPKNWSDLQHLDTIDLSKNKLSGGIPSWMCSK 627

Query: 487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGN-LSHLRALYLSFN 545
           S+L  L L  N L G L  SL N   L  L L  N F G +P  IG  +  L  + L  N
Sbjct: 628 SSLTQLILGDNNLTGELTPSLQNCTGLSSLDLGNNRFSGEIPKWIGERMPSLEQMRLRGN 687

Query: 546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           +++  I E +  LS  ++LDL  N+  G I +    NL+ L ++ + + N
Sbjct: 688 MLTGDIPEQLCWLSHLHILDLAVNNLSGFIPQC-LGNLTALSFVALLNRN 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473584|ref|XP_003631327.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 239/675 (35%), Positives = 339/675 (50%), Gaps = 131/675 (19%)

Query: 28  GIGSNYDCGNFSIRCTERERE----------ALLKFKGLIDPSARLSSWKS-PIPEFVYS 76
           G+  N   GN  ++   R+R           +LL  K L      L+ ++  PIP F+ S
Sbjct: 75  GVDCNNRTGNV-VKVDLRDRGFFLLGGEISGSLLDLKHLTYLDLSLNDFQGIPIPNFLGS 133

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
            ++L+ L+LS ++F GM+PP++GNLS L+YLDL      +Y +     VS+L WL  LSS
Sbjct: 134 FERLRYLNLSNAAFGGMIPPHLGNLSQLRYLDLFGGG--DYPMR----VSNLNWLSGLSS 187

Query: 137 SRYLHLEGMKLSKVT-NWLQVVNELPSLVELHLSNCQL-NFPQ-SLPFLNFTSLSILELS 193
            +YL L  + LSK T NW++ VN LP L+ELHLS C+L +FP  S PF+N TS+ +++LS
Sbjct: 188 LKYLDLGYVDLSKTTTNWMRAVNMLPFLLELHLSVCELSHFPHYSNPFVNLTSVLVIDLS 247

Query: 194 YDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL----------------- 236
           Y+NFN+ +P WLFN+STL  L L    + G IP      +CNL                 
Sbjct: 248 YNNFNTTLPGWLFNVSTLTDLYLNGGTIKGPIPHVNLRCLCNLVTLDLSHNSIGGEGIEF 307

Query: 237 ------------------------------------RRLDLAINGFSGEKEQFIQTLSGC 260
                                               + LDL+ N F G     IQ L+  
Sbjct: 308 LSRLSACTNNSLEELNLGGNQVSGQLPDSLGLFKNLKSLDLSYNSFVGPFPNSIQHLTNL 367

Query: 261 NNSTLET--------------LETQR-------MNGTISENIGQLAELVALNLYRNSWKG 299
            +  L                L  +R       MNGTI E+IGQL EL  L L  NSW+G
Sbjct: 368 ESLYLSKNSISGPIPTWIGNLLRMKRLGMSFNLMNGTIPESIGQLRELTELYLDWNSWEG 427

Query: 300 IITENHFQNLTKLN--SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK 357
           +I+E HF NLTKL   SL+LS  N+SL F +R +WIPPFSL  + I++C +   FP+WL+
Sbjct: 428 VISEIHFSNLTKLEYFSLHLSPKNQSLRFHVRPEWIPPFSLLYIRISNCYVSPKFPNWLR 487

Query: 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY---- 413
           TQ  +  + L N  ISDTIP+W W +     S +D+S N+ +G + +SL   P       
Sbjct: 488 TQKRLNTIVLKNVGISDTIPEWLWKL---DFSWLDISKNQLYGKLPNSLSFSPGAVVVDL 544

Query: 414 -----------W-----LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
                      W     L LG N  SG +  ++ + S L  LDI GN       +S+  L
Sbjct: 545 SFNRLVGRFPLWFNVIELFLGNNLFSGPIPLNIGELSSLEILDISGNLLNGSIPSSISKL 604

Query: 458 CNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517
            +L+ +D+S NH++G+I +  N     ++  L+T+DL+ NKL G +P S+   + L  L 
Sbjct: 605 KDLNEIDLSNNHLSGKIPKNWN-----DLHHLDTIDLSKNKLSGGIPSSMCT-ISLFNLI 658

Query: 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ-LSEPYMLDLYGNSWEGVIT 576
           L +N+  G L  S+ N + L +L L  N  S  I + IG+ +S    L L GN   G I 
Sbjct: 659 LGDNNLSGKLSQSLQNCTELHSLDLGNNRFSGEIPKWIGEKMSSLRQLRLRGNMLTGDIP 718

Query: 577 EKHFRNLSGLDYLTI 591
           E+    L GL YL I
Sbjct: 719 EQ----LCGLSYLHI 729

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547440|ref|XP_002514777.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223545828|gb|EEF47331.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 292/511 (57%), Gaps = 33/511 (6%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDL-SYQNLKEYQITKELWVSD 127
           PIP+F+ +L +LK L+LS +SF+GM+P  + NL NL+YLDL  Y  L  +   + +WVS+
Sbjct: 132 PIPDFIGNLSELKYLNLSHASFAGMVPTQLRNLKNLEYLDLYPYSYLVAF--PERIWVSE 189

Query: 128 LIWLPDLSSSRYLHLEGMKLSKV-TNWLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFT 185
             W+  LSS +YL+L  + LS + T WL  +++LPSLVEL L  C L  FPQ LP LN T
Sbjct: 190 ASWMSGLSSLKYLNLGNVNLSLISTAWLDALHKLPSLVELRLPGCGLRTFPQFLPSLNLT 249

Query: 186 SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING 245
           SL +L L  ++FNS IP WLFNI+TLV LNL +S+L+G +  +    +C++         
Sbjct: 250 SLQVLHLYNNHFNSSIPHWLFNITTLVELNLMNSELTGPVSSYAWRNLCSIPT------- 302

Query: 246 FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENH 305
                     ++   +      L   +++G I E IGQL  L  L+L+ NSW G I+E+H
Sbjct: 303 ----------SIERLSLLEDLDLSANKLSGNIPEIIGQLESLTYLDLFGNSWVGNISESH 352

Query: 306 FQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365
           F +L  L    LSS NKSL F +R +W+PPFSL+ + + DCQLG  FP+WL+TQ  + ++
Sbjct: 353 FLSLKNLKVFSLSSVNKSLAFDVRQEWVPPFSLQVILVRDCQLGPKFPAWLETQKELVRI 412

Query: 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425
           TL + AISD++P WFW    Q +  ++L NN+  G +  SL   P    + +  N L G 
Sbjct: 413 TLIDDAISDSLPVWFWKFTPQ-IRWLELQNNQIHGTLPVSLSFTPGTVRVDVSSNRLEG- 470

Query: 426 LSTSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSAC 484
               LP CS + +L    N F   +PST   N+     L+++ N + GEI       S  
Sbjct: 471 ---LLPICSNVQSLSFSSNLFKGPIPSTIGQNMSASVVLELAGNSLNGEIPS-----SIS 522

Query: 485 NVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544
            +  L  LDL++N+L G +P +   L  ++ + LS N+  G +P S+ +L  L+ L LS 
Sbjct: 523 EMKKLNLLDLSNNQLSGIIPKNWEGLEDMDTIDLSLNNLSGGIPGSMCSLPQLQVLKLSR 582

Query: 545 NVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575
           N +S ++S+++   +    LDL  N + G I
Sbjct: 583 NNLSGLLSDSLLNCTHVSSLDLGYNQFTGDI 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822632|emb|CAN75075.1| hypothetical protein VITISV_026260 [Vitis vinifera]

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 307/582 (52%), Gaps = 67/582 (11%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
           +PIP+F+ SL+KL+ L+LS +SF G +PP +GNLS+L YLDL     KEY    E   +D
Sbjct: 128 TPIPKFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDL-----KEY--FDESNQND 180

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTN-WLQVVNELPSLVELHLSNCQL-NFPQSLPFLNF- 184
           L W+  L+S R+L+L G+ LS+    WLQ V++LPSL ELHL  C L + P SLPF N  
Sbjct: 181 LHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPSLPFSNLI 240

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSI-PKFPPG----------KM 233
           TSLSI++LS + FNS IP WLF +  LV L+L S+ L GSI   F  G           +
Sbjct: 241 TSLSIIDLSNNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDAFANGTSIERLRNMGSL 300

Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLET--QRMNGTISENIGQLAEL---- 287
           CNL+ L L+ N  +GE  + I  LSGCN+S LETL+     + G +  ++G+L  L    
Sbjct: 301 CNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGFNDLGGFLPNSLGKLHNLKSLW 360

Query: 288 -------VALNLYRNSWKGIITENHFQNLTKLNSL--YLSSSNKSLVFTMRSDWIPPFSL 338
                  VA+ J  N   G++TE HF NL  L     Y  +   SLVF +  +WIPPF L
Sbjct: 361 LWDNSFLVAIEJSENPLTGVVTEAHFSNLXSLXEFSNYRVTPRVSLVFNISPEWIPPFKL 420

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
             + I  CQ+G  FP+WL+ Q  +  + L+NA IS TIP+WFW  +  +L  +D+ +N  
Sbjct: 421 SLLRIRSCQMGPKFPAWLRNQTELTDVVLNNAGISHTIPEWFWK-LDLRLDELDIGSNNL 479

Query: 399 FGGILSSLCSLPSLYWLRLGGNNLSGEL-----------------STSLP-----DCSRL 436
            G + +S+  LP    + L  NN  G L                 S  +P         L
Sbjct: 480 GGRVPNSMKFLPGST-VDLSENNFQGPLPLWSSNVMKLYLYDNFFSGPIPLEFGERMPML 538

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS 496
           T LD+  N        S G L NL +L IS NH++G I E  N      +  L  +D+ +
Sbjct: 539 TDLDLSSNALNGTIPLSFGKLNNLLTLVISNNHLSGGIPEFWNG-----LPYLYAIDMNN 593

Query: 497 NKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIG 556
           N L G LP S+G+L  L +L +S N   G LP+++ N + +  L L  N  S  +   IG
Sbjct: 594 NNLSGELPSSMGSLRFLRFLMISNNHLSGQLPSALQNCTGIHTLDLGGNXFSGNVPAWIG 653

Query: 557 Q-LSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597
           + L    +L L  N + G I  +    LS L  L +  +N S
Sbjct: 654 ERLPNLLILRLRSNLFHGSIPSQ-LCTLSSLHILDLGENNLS 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.745	0.523	0.310	4.3e-49
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.724	0.449	0.282	7.9e-29
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.764	0.427	0.277	2.5e-28
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.836	0.527	0.273	3.6e-28
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.759	0.462	0.265	8.5e-27
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.823	0.533	0.250	6e-26
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.828	0.521	0.262	8.1e-26
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.757	0.430	0.266	9.6e-26
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.789	0.439	0.277	9.9e-26
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.800	0.511	0.266	3.7e-25

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 4.3e-49, Sum P(2) = 4.3e-49
 Identities = 160/515 (31%), Positives = 241/515 (46%)

Query:    94 LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHL--EGMKLSKVT 151
             LPP + + ++L+ L++   +L E  +   +      WL  L++ R L L  + ++ S  T
Sbjct:   236 LPPTLSSSADLKLLEVL--DLSENSLNSPI----PNWLFGLTNLRKLFLRWDFLQGSIPT 289

Query:   152 NWLQVVNELPSLVELHLSNCQLNFPQSLPFL--NFTSLSILELSYDNFNSQIPQWLFNIS 209
              +      L  L  L LSN  L     +P +  +   L  L+LS +  N QI  +L   S
Sbjct:   290 GF----KNLKLLETLDLSN-NLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFS 344

Query:   210 -----TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNST 264
                  +LV L+L S++L+G++P+   G + NL+ LDL+ N F+G     I  ++      
Sbjct:   345 RNKGNSLVFLDLSSNKLAGTLPE-SLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKK-- 401

Query:   265 LETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF-QXXXXXXXXXXXXXXXX 323
             L+ L    MNGTI+E++GQLAELV LNL  N+W G++ ++HF                  
Sbjct:   402 LD-LSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRS 460

Query:   324 XVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPD-WFWG 382
              VF + S WIPPF L  + I +C++G  FP WL+ Q  +  +TL N  I DTIPD WF G
Sbjct:   461 LVFKLPSTWIPPFRLELIQIENCRIG-LFPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSG 519

Query:   383 VISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS-RLTALDI 441
              IS K++ + L+NN+  G +   L + P L  + L  NN  G    + P  S   T L +
Sbjct:   520 -ISSKVTYLILANNRIKGRLPQKL-AFPKLNTIDLSSNNFEG----TFPLWSTNATELRL 573

Query:   442 GGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
               N F   LP      +  +  + +  N  TG I       S C VS L+ L L  N   
Sbjct:   574 YENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPS-----SLCEVSGLQILSLRKNHFS 628

Query:   501 GNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSE 560
             G+ P                 +  G +P S+G L  L  L L+ N +   I E++   S 
Sbjct:   629 GSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSG 688

Query:   561 PYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
                +DL GN   G +       LS L  L + S++
Sbjct:   689 LTNIDLGGNKLTGKLPS-WVGKLSSLFMLRLQSNS 722

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 351 (128.6 bits), Expect = 7.9e-29, P = 7.9e-29
 Identities = 139/492 (28%), Positives = 219/492 (44%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT 151
             G +PP +  LS LQ L+LS  N  +  I   +     +   DLS ++   L GM   ++ 
Sbjct:   117 GEIPPELSRLSRLQLLELS-DNSIQGSIPAAIGACTKLTSLDLSHNQ---LRGMIPREIG 172

Query:   152 NWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL 211
               L+ ++ L  L +  LS      P +L   N TSL   +LS++  +  IP  L  +S+L
Sbjct:   173 ASLKHLSNL-YLYKNGLSG---EIPSALG--NLTSLQEFDLSFNRLSGAIPSSLGQLSSL 226

Query:   212 VTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-- 269
             +T+NL  + LSG IP      + +LR   +  N   G     I T +      LE ++  
Sbjct:   227 LTMNLGQNNLSGMIPN-SIWNLSSLRAFSVRENKLGG----MIPTNAFKTLHLLEVIDMG 281

Query:   270 TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXV---F 326
             T R +G I  ++   + L  + +Y N + GIIT    +                     +
Sbjct:   282 TNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDW 341

Query:   327 TMRSDWIPPFSLRQMAINDCQLGSAFP-SWLKTQASVFKLTLSNAAISDTIPDWFWGVIS 385
                SD      L+ + + +  LG   P S+     S+  L L    I+ +IP     +I 
Sbjct:   342 GFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIG 401

Query:   386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445
               L  + L NN F G + SSL  L +L  L    NNLSG +  ++ + + L  L +G N+
Sbjct:   402 --LQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNK 459

Query:   446 FLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL-DLASNKLGGNL 503
             F   +P T + NL NL SL +S N+++G I   +  F   N+ TL  + +++ N L G++
Sbjct:   460 FSGWIPYT-LSNLTNLLSLGLSTNNLSGPIP--SELF---NIQTLSIMINVSKNNLEGSI 513

Query:   504 PDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM 563
             P                    G +P ++G+   LR LYL  N++S  I   +GQL     
Sbjct:   514 PQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLET 573

Query:   564 LDLYGNSWEGVI 575
             LDL  N+  G I
Sbjct:   574 LDLSSNNLSGQI 585

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 145/522 (27%), Positives = 227/522 (43%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQNLK--------EYQITKELWVS-DLIW--LPDLSS--SR 138
             G +P  + NL+ LQ L+LSY  L           Q  + LW+  +L+   LP   S  S 
Sbjct:   176 GQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSS 235

Query:   139 YLHLEGMKLSKVTNWLQVV-NELPSLVELHLSNCQLNFPQSLPFLNF--TSLSILELSYD 195
              +HL   + +++   +      LP L  L LSN   NF  ++PF  F  TSL+I++L ++
Sbjct:   236 LVHLSASE-NEIGGVIPAAYGALPKLEVLSLSNN--NFSGTVPFSLFCNTSLTIVQLGFN 292

Query:   196 NFNSQI-PQWLFNIST-LVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQF 253
              F+  + P+   N  T L  L+L+ +++SG  P +    + +L+ LD++ N FSGE    
Sbjct:   293 AFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTN-ILSLKNLDVSGNLFSGEIPPD 351

Query:   254 IQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXX 313
             I  L       L+ L    + G I   I Q   L  L+   NS KG I E  F       
Sbjct:   352 IGNLKRLEE--LK-LANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPE--FLGYMKAL 406

Query:   314 XXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
                         + + S  +    L ++ + +  L  +FP  L    S+ +L LS    S
Sbjct:   407 KVLSLGRNSFSGY-VPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFS 465

Query:   374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC 433
               +P     +    LS ++LS N F G I +S+ +L  L  L L   N+SGE+   L   
Sbjct:   466 GAVPVSISNL--SNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGL 523

Query:   434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLD 493
               +  + + GN F  +      +L +L  +++S N  +GEI + T  F    +  L +L 
Sbjct:   524 PNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQ-TFGF----LRLLVSLS 578

Query:   494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
             L+ N + G++P                   +G +P  +  L  L+ L L  N +S  I  
Sbjct:   579 LSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPP 638

Query:   554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
              I Q S    L L  N   GVI    F  LS L  + +S +N
Sbjct:   639 EISQSSSLNSLSLDHNHLSGVIPGS-FSGLSNLTKMDLSVNN 679

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 3.6e-28, P = 3.6e-28
 Identities = 160/586 (27%), Positives = 252/586 (43%)

Query:    44 EREREALLKFKGLIDPSAR--LSSWKSPIP----EFVY---XXXXXXXXXXXXXXXXGML 94
             E +R+ALL+ K  +  S R  LS+W +  P    ++V                    G++
Sbjct:    23 ESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVI 82

Query:    95 PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEG---MKLSKVT 151
              P+IGNLS L YLDLS  N     I +E+   +L  L  L+   + +LEG     LS  +
Sbjct:    83 SPSIGNLSFLIYLDLS-NNSFGGTIPQEM--GNLFRLKYLAVG-FNYLEGEIPASLSNCS 138

Query:   152 NWLQ-----------VVNELPSLVELHLSNCQLN-FPQSLP-FL-NFTSLSILELSYDNF 197
               L            V +EL SL +L      LN      P F+ N TSL +L L Y++ 
Sbjct:   139 RLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHL 198

Query:   198 NSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPG--KMCNLRRLDLAINGFSGE-KEQFI 254
               +IP  +  +S +V+L L  +  SG    FPP    + +L  L L  NGFSG  K  F 
Sbjct:   199 EGEIPDDIAMLSQMVSLTLTMNNFSGV---FPPAFYNLSSLENLYLLGNGFSGNLKPDFG 255

Query:   255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXX 314
               L   +  +L       + G I   +  ++ L    + +N   G I+ N  +       
Sbjct:   256 NLLPNIHELSLHG---NFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYL 312

Query:   315 XXXXXXXXXXVFTMRS--DWIPPFS-LRQMAINDCQLGSAFP-SWLKTQASVFKLTLSNA 370
                        F   +  D +   S L  ++++  +LG A P S +     +  L L   
Sbjct:   313 ELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGN 372

Query:   371 AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
              I  +IP     +I   L  + L++N   G + +SL +L  L  L L  N  SGE+ + +
Sbjct:   373 LIYGSIPHDIGNLIG--LQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFI 430

Query:   431 PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI-KELTNAFSACNVSTL 489
              + ++L  L +  N F  +   S+G+  ++  L I YN + G I KE+        + TL
Sbjct:   431 GNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQ------IPTL 484

Query:   490 ETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSR 549
               L++ SN L G+LP+                +  G LP ++G    +  +YL  N    
Sbjct:   485 VHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDG 544

Query:   550 IISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
              I +  G +    + DL  N+  G I+E +F N S L+YL +S +N
Sbjct:   545 TIPDIKGLMGVKNV-DLSNNNLSGSISE-YFENFSKLEYLNLSDNN 588

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 8.5e-27, P = 8.5e-27
 Identities = 140/527 (26%), Positives = 213/527 (40%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT 151
             G + P  G  S L+Y DLS   L   +I  EL         DLS+   LHL   KL+   
Sbjct:   132 GTISPLWGRFSKLEYFDLSINQLVG-EIPPELG--------DLSNLDTLHLVENKLNGSI 182

Query:   152 NWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL 211
                  +  L  + E+ + +  L  P    F N T L  L L  ++ +  IP  + N+  L
Sbjct:   183 P--SEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNL 240

Query:   212 VTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ 271
               L L  + L+G IP    G + N+  L++  N  SGE    I  ++  +  TL +L T 
Sbjct:   241 RELCLDRNNLTGKIPS-SFGNLKNVTLLNMFENQLSGEIPPEIGNMTALD--TL-SLHTN 296

Query:   272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXV---FTM 328
             ++ G I   +G +  L  L+LY N   G I     +                 V   F  
Sbjct:   297 KLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGK 356

Query:   329 RS--DW-----------IPPFSLRQMAINDCQLGS----AF-PSWLKTQASVFKLTLSNA 370
              +  +W           IPP       +   QL +     F P  +     +  LTL + 
Sbjct:   357 LTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDN 416

Query:   371 AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
                  +P       S  L  +    N F G I  +    P+L ++ L  NN  G+LS + 
Sbjct:   417 HFEGPVPKSLRDCKS--LIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANW 474

Query:   431 PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLE 490
                 +L A  +  N         + N+  L  LD+S N ITGE+ E     S  N++ + 
Sbjct:   475 EQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPE-----SISNINRIS 529

Query:   491 TLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRI 550
              L L  N+L G +P                  F   +P ++ NL  L  + LS N + + 
Sbjct:   530 KLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQT 589

Query:   551 ISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597
             I E + +LS+  MLDL  N  +G I+ + FR+L  L+ L +S +N S
Sbjct:   590 IPEGLTKLSQLQMLDLSYNQLDGEISSQ-FRSLQNLERLDLSHNNLS 635

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 6.0e-26, P = 6.0e-26
 Identities = 145/578 (25%), Positives = 247/578 (42%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQN--------LKEYQITKELWVSDLIWLPDLSSS----RY 139
             G +P ++GNLS+L  +DL   N        L          +SD   + ++ SS      
Sbjct:   246 GKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQ 305

Query:   140 LHLEGMKLSKVTNWLQV-VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILEL---SYD 195
             L +  +K +K++    + +  L  L  L L N +L    +LP  N +SLS L+L   + +
Sbjct:   306 LDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLT--GTLPS-NMSSLSNLKLFDATEN 362

Query:   196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
             +F   +P  LFNI +L T+ L ++QL+GS+         NL  L L  N F G   + I 
Sbjct:   363 HFTGPLPSSLFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSIS 422

Query:   256 TLSGCNNSTLETLETQRMNGTISENI-GQLAELVALNLYRNSWKGIITENHFQXXXXXXX 314
              L       L    TQ   G +   I   L  +  LNL  +      T + ++       
Sbjct:   423 KLVNLKELDLSNYNTQ---GLVDFTIFSHLKSIEYLNL--SHLNTTTTIDMYEILSSFKL 477

Query:   315 XXXXXXXXXXVFTMRSDWIPPFSL---RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA 371
                       V T     +   SL    Q+ ++ C + + FP +L++Q  +  L +SN  
Sbjct:   478 LDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGI-TEFPKFLRSQELMLTLDISNNK 536

Query:   372 ISDTIPDWFWGVISQKLSVIDLSNNKFFG-------GILSSLCSLPSLYWLRLGGNNLSG 424
             I   +P W W  +   L+ ++LSNN F G       G L+S+   P++  L    NN +G
Sbjct:   537 IKGQVPGWLW--MLPVLNYVNLSNNTFIGFERSTKLG-LTSIQEPPAMRQLFCSNNNFTG 593

Query:   425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCN--LHSLDISYNHITGEIKELTNAFS 482
              + + + +   L+ LD   N+F     T MGN+ +  L +L++ +N ++G + E  N F 
Sbjct:   594 NIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPE--NIFE 651

Query:   483 ACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYL 542
             +     L +LD+  N+L G LP                     + P  + +L  L+ L L
Sbjct:   652 S-----LISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVL 706

Query:   543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS--SNSSLVF 600
               N     I +   Q S+  ++D+ GN + G +    F N + +  L  +   SN   + 
Sbjct:   707 RSNAFYGPIEKT--QFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMS 764

Query:   601 NI--RHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPNFS 636
             N+    D+    ++  +  G  + ++ + K  T  +FS
Sbjct:   765 NMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFS 802

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 8.1e-26, P = 8.1e-26
 Identities = 150/571 (26%), Positives = 246/571 (43%)

Query:    44 EREREALLKFKGLIDPSAR--LSSWKSPIP----EFVY---XXXXXXXXXXXXXXXXGML 94
             E +R+ALL+FK  +    R  LSSW +  P    ++V                    G++
Sbjct:    23 ETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIV 82

Query:    95 PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL 154
              P+IGN+S L  LDLS  N     I +E  V +L  L  L  + +  LEG   + ++N  
Sbjct:    83 SPSIGNVSFLISLDLS-DNAFGGIIPRE--VGNLFRLEHLYMA-FNSLEGGIPATLSNCS 138

Query:   155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTL 214
             +++N     ++L+ +  +   P  L  L  T L IL+L  +N   ++P+ L N+++L +L
Sbjct:   139 RLLN-----LDLYSNPLRQGVPSELGSL--TKLVILDLGRNNLKGKLPRSLGNLTSLKSL 191

Query:   215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN 274
                 + + G +P     ++  +  L L++N F G     I  LS   +  L        +
Sbjct:   192 GFTDNNIEGEVPD-ELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFG---SGFS 247

Query:   275 GTISENIGQLAELVA-LNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWI 333
             G++  + G L   +  LNL  N   G I                       ++      +
Sbjct:   248 GSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGK-V 306

Query:   334 PPFSLRQMAINDCQLGS------AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQK 387
             P  SL+ + +++  LGS       F   L     +  L++    +   +P     + ++ 
Sbjct:   307 P--SLQYLDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTEL 364

Query:   388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
             +S ++L  N FFG I   + +L  L  L+LG N L+G L TSL    RL  L +  NR  
Sbjct:   365 IS-LNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMS 423

Query:   448 -QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDX 506
              ++PS  +GNL  L  L +S N   G +     +   C  S +  L +  NKL G +P  
Sbjct:   424 GEIPSF-IGNLTQLEILYLSNNSFEGIVPP---SLGKC--SHMLDLRIGYNKLNGTIPKE 477

Query:   507 XXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566
                            S  GSLP  IG+L +L  L L  N  S  + + +G       L L
Sbjct:   478 IMQIPTLVNLSMEGNSLSGSLPNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFL 537

Query:   567 YGNSWEGVITEKHFRNLSGLDYLTISSSNSS 597
              GNS++G I   + R L G+  + +S+++ S
Sbjct:   538 QGNSFDGAIP--NIRGLMGVRRVDLSNNDLS 566

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 9.6e-26, P = 9.6e-26
 Identities = 139/521 (26%), Positives = 230/521 (44%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYL-----HLEGMK 146
             G +P  +GNL NL  L L Y+N     I  E+   + +    LS ++        L  +K
Sbjct:   236 GSIPSTLGNLKNLMVLYL-YENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLK 294

Query:   147 ----LSKVTNWLQ-----VVNELPSLVELHLSNCQL--NFPQSLPFLNFTSLSILELSYD 195
                 LS   N+L       +  + S+++L LSN +L  + P SL   N  +L+IL L Y+
Sbjct:   295 NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLG--NLKNLTILYL-YE 351

Query:   196 NF-NSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
             N+    IP  L N+ +++ L L +++L+GSIP    G + NL  L L +N  +G   Q +
Sbjct:   352 NYLTGVIPPELGNMESMIDLQLNNNKLTGSIPS-SFGNLKNLTYLYLYLNYLTGVIPQEL 410

Query:   255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXX 314
               +    N  L+ L   ++ G++ ++ G   +L +L L  N   G I             
Sbjct:   411 GNMESMIN--LD-LSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPG-VANSSHLTT 466

Query:   315 XXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD 374
                        F           L+ ++++   L    P  L+   S+ +        + 
Sbjct:   467 LILDTNNFTGFFP--ETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTG 524

Query:   375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS 434
              I + F G+    L+ ID S+NKF G I S+    P L  L +  NN++G + T + + +
Sbjct:   525 DIFEAF-GIYPD-LNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMT 582

Query:   435 RLTALDIGGNR-FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLD 493
             +L  LD+  N  F +LP  ++GNL NL  L ++ N ++G +    + F    ++ LE+LD
Sbjct:   583 QLVELDLSTNNLFGELPE-AIGNLTNLSRLRLNGNQLSGRVPAGLS-F----LTNLESLD 636

Query:   494 LASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISE 553
             L+SN     +P                  F GS+P  +  L+ L  L LS N +   I  
Sbjct:   637 LSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPS 695

Query:   554 NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS 594
              +  L     LDL  N+  G+I    F  +  L  + IS++
Sbjct:   696 QLSSLQSLDKLDLSHNNLSGLIPTT-FEGMIALTNVDISNN 735

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 9.9e-26, P = 9.9e-26
 Identities = 156/563 (27%), Positives = 245/563 (43%)

Query:    92 GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIW-LPDLSSSRYLHLEGMKLS-K 149
             G LP ++G+   L+ LDLS   L          V D+ W L  L +   L L   +L+ K
Sbjct:   119 GTLPESLGDCLGLKVLDLSSNGL----------VGDIPWSLSKLRNLETLILNSNQLTGK 168

Query:   150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN-FNSQIPQWLFNI 208
             +   +   ++L SL+ L  +    + P  L  L+   L ++ +  +   + QIP  + + 
Sbjct:   169 IPPDISKCSKLKSLI-LFDNLLTGSIPTELGKLS--GLEVIRIGGNKEISGQIPSEIGDC 225

Query:   209 STLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETL 268
             S L  L L  + +SG++P    GK+  L  L +     SGE       L  C+      L
Sbjct:   226 SNLTVLGLAETSVSGNLPS-SLGKLKKLETLSIYTTMISGE---IPSDLGNCSELVDLFL 281

Query:   269 ETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXV--- 325
                 ++G+I   IGQL +L  L L++NS  G I E                     +   
Sbjct:   282 YENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSS 341

Query:   326 -----FT---MRSD-----WIPPF-----SLRQMAINDCQLGSAFPSWLKTQASVFKLTL 367
                  F    M SD      IP       SL Q+ ++  Q+    PS L T   + KLTL
Sbjct:   342 IGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGT---LTKLTL 398

Query:   368 SNA---AISDTIPDWFWGVIS-QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
               A    +  +IP    G+     L  +DLS N   G I S L  L +L  L L  N+LS
Sbjct:   399 FFAWSNQLEGSIPP---GLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLS 455

Query:   424 GELSTSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS 482
             G +   + +CS L  L +G NR   ++PS  +G+L  ++ LD S N + G++ +      
Sbjct:   456 GFIPQEIGNCSSLVRLRLGFNRITGEIPS-GIGSLKKINFLDFSSNRLHGKVPD---EIG 511

Query:   483 ACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTSIGNLSHLRALYL 542
             +C  S L+ +DL++N L G+LP+                 F G +P S+G L  L  L L
Sbjct:   512 SC--SELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLIL 569

Query:   543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNI 602
             S N+ S  I  ++G  S   +LDL  N   G I  +   ++  L+ + ++ S++ L   I
Sbjct:   570 SKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSE-LGDIENLE-IALNLSSNRLTGKI 627

Query:   603 RHDWIAPFNLYTIRGGTRLLVQG 625
                 IA  N  +I   +  +++G
Sbjct:   628 PSK-IASLNKLSILDLSHNMLEG 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 147/551 (26%), Positives = 231/551 (41%)

Query:    56 LIDPSARLSSWKS--PIP------EFVYXXXXXXXXXXXXXXXXGMLPPNIGNLSNLQYL 107
             L DP + LSSW S    P                          G  P  I  LSNL +L
Sbjct:    30 LDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAHL 89

Query:   108 DLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELH 167
              L Y N      T  L ++    L  L  S+ L L G +L       Q + ++P+LV L 
Sbjct:    90 SL-YNN--SINSTLPLNIAACKSLQTLDLSQNL-LTG-ELP------QTLADIPTLVHLD 138

Query:   168 LSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSI 225
             L+    NF   +P  F  F +L +L L Y+  +  IP +L NISTL  LNL  +  S S 
Sbjct:   139 LTGN--NFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPS- 195

Query:   226 PKFPP--GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQ 283
              + PP  G + NL  + L      G+    +  LS   +  L+ L    + G I  ++G 
Sbjct:   196 -RIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVD--LD-LALNDLVGHIPPSLGG 251

Query:   284 LAELVALNLYRNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAI 343
             L  +V + LY NS  G I                       +     D +    L  + +
Sbjct:   252 LTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKI----PDELCRVPLESLNL 307

Query:   344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL 403
              +  L    P+ +    +++++ +    ++  +P    G ++  L  +D+S N+F G + 
Sbjct:   308 YENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDL-G-LNSPLRWLDVSENEFSGDLP 365

Query:   404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSL 463
             + LC+   L  L +  N+ SG +  SL DC  LT + +  NRF     T    L +++ L
Sbjct:   366 ADLCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLL 425

Query:   464 DISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSF 523
             ++  N  +GEI +     S    S L  L L++N+  G+LP+                 F
Sbjct:   426 ELVNNSFSGEISK-----SIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKF 480

Query:   524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNL 583
              GSLP S+ +L  L  L L  N  S  ++  I    +   L+L  N + G I ++   +L
Sbjct:   481 SGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDE-IGSL 539

Query:   584 SGLDYLTISSS 594
             S L+YL +S +
Sbjct:   540 SVLNYLDLSGN 550

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	636
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-23
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  149 bits (377), Expect = 2e-37
 Identities = 168/553 (30%), Positives = 248/553 (44%), Gaps = 49/553 (8%)

Query: 38  FSIRCTERER-EALLKFKGLI-DPSARLSSWKSPIPEFVYS------LKKLKLLDLSESS 89
            +      E  E LL FK  I DP   LS+W S     ++         ++  +DLS  +
Sbjct: 21  LNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKN 80

Query: 90  FSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149
            SG +   I  L  +Q ++LS   L    I  +++ +        SS RYL+L     + 
Sbjct: 81  ISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTS-------SSLRYLNLSNNNFTG 132

Query: 150 VTNWLQVVNELPSLVELHLSNCQLN--FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFN 207
                     +P+L  L LSN  L+   P  +    F+SL +L+L  +    +IP  L N
Sbjct: 133 SIP----RGSIPNLETLDLSNNMLSGEIPNDIGS--FSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 208 ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLET 267
           +++L  L L S+QL G IP+   G+M +L+ + L  N  SGE    I  L+  N+  L  
Sbjct: 187 LTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 268 LETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKS---- 323
                + G I  ++G L  L  L LY+N   G I  + F +L KL SL LS ++ S    
Sbjct: 246 ---NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIP 301

Query: 324 -LVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWG 382
            LV  +++       L  + +         P  L +   +  L L +   S  IP     
Sbjct: 302 ELVIQLQN-------LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 383 VISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442
                L+V+DLS N   G I   LCS  +L+ L L  N+L GE+  SL  C  L  + + 
Sbjct: 355 --HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN 502
            N F     +    L  ++ LDIS N++ G I          ++ +L+ L LA NK  G 
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-----RKWDMPSLQMLSLARNKFFGG 467

Query: 503 LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
           LPDS G+   LE L LS N F G++P  +G+LS L  L LS N +S  I + +    +  
Sbjct: 468 LPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

Query: 563 MLDLYGNSWEGVI 575
            LDL  N   G I
Sbjct: 527 SLDLSHNQLSGQI 539

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (323), Expect = 1e-30
 Identities = 145/508 (28%), Positives = 217/508 (42%), Gaps = 70/508 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S+  L+ LDLS +  SG +P +IG+ S+L+ LDL   N+   +I           L +L+
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIP--------NSLTNLT 188

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHL-----SNCQLNFPQSLPFLNFTSLSIL 190
           S  +L L   +L       Q+  EL  +  L       +N     P  +  L  TSL+ L
Sbjct: 189 SLEFLTLASNQLVG-----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHL 241

Query: 191 ELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK 250
           +L Y+N    IP  L N+  L  L L  ++LSG IP      +  L  LDL+ N  SGE 
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEI 300

Query: 251 EQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITEN--HF 306
            + +  L       LE L   +    G I   +  L  L  L L+ N + G I +N    
Sbjct: 301 PELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
            NLT L+   LS++N                          L    P  L +  ++FKL 
Sbjct: 356 NNLTVLD---LSTNN--------------------------LTGEIPEGLCSSGNLFKLI 386

Query: 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL 426
           L + ++   IP        + L  + L +N F G + S    LP +Y+L +  NNL G +
Sbjct: 387 LFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 427 STSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN 485
           ++   D   L  L +  N+F   LP +       L +LD+S N  +G +     + S   
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLS--- 499

Query: 486 VSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
              L  L L+ NKL G +PD L +   L  L LS N   G +P S   +  L  L LS N
Sbjct: 500 --ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 546 VMSRIISENIGQLSEPYMLDLYGNSWEG 573
            +S  I +N+G +     +++  N   G
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (318), Expect = 4e-30
 Identities = 138/461 (29%), Positives = 205/461 (44%), Gaps = 74/461 (16%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           IP  +  +K LK + L  ++ SG +P  IG L++L +LDL Y NL     T  +  S   
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-----TGPIPSS--- 255

Query: 130 WLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSI 189
            L +L + +YL L   KLS        +  L  L+ L LS+  L+       +   +L I
Sbjct: 256 -LGNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

Query: 190 LELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGE 249
           L L  +NF  +IP  L ++  L  L L S++ SG IPK   GK  NL  LDL+ N  +GE
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGE 371

Query: 250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNL 309
                + L    N     L +  + G I +++G    L  + L  NS+ G +    F  L
Sbjct: 372 ---IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKL 427

Query: 310 TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSN 369
             +  L +S++N       R   +P     QM                       L+L+ 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSL---QM-----------------------LSLAR 461

Query: 370 AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTS 429
                 +PD F    S++L  +DLS N+F G +   L SL  L  L+L  N LSGE+   
Sbjct: 462 NKFFGGLPDSFG---SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 430 LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL 489
           L  C +L                         SLD+S+N ++G+I     +FS   V  L
Sbjct: 519 LSSCKKLV------------------------SLDLSHNQLSGQIPA---SFSEMPV--L 549

Query: 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTS 530
             LDL+ N+L G +P +LGN+  L  + +S N   GSLP++
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 2e-23
 Identities = 99/322 (30%), Positives = 160/322 (49%), Gaps = 16/322 (4%)

Query: 260 CNNSTLET---LETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
           CNNS+      L  + ++G IS  I +L  +  +NL  N   G I ++ F   + L   Y
Sbjct: 65  CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL--RY 122

Query: 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI 376
           L+ SN +   ++    IP  +L  + +++  L    P+ + + +S+  L L    +   I
Sbjct: 123 LNLSNNNFTGSIPRGSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL 436
           P+    + S  L  + L++N+  G I   L  + SL W+ LG NNLSGE+   +   + L
Sbjct: 181 PNSLTNLTS--LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 437 TALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA 495
             LD+  N     +PS S+GNL NL  L +  N ++G I       S  ++  L +LDL+
Sbjct: 239 NHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPP-----SIFSLQKLISLDLS 292

Query: 496 SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI 555
            N L G +P+ +  L  LE L L  N+F G +P ++ +L  L+ L L  N  S  I +N+
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 556 GQLSEPYMLDLYGNSWEGVITE 577
           G+ +   +LDL  N+  G I E
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (263), Expect = 2e-23
 Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 367 LSNAAISDTIPDWFWGVI---SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
           LSN   S  +  W  G+    S ++  IDLS     G I S++  LP +  + L  N LS
Sbjct: 48  LSNWNSSADVCLWQ-GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 424 GELSTSL-PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS 482
           G +   +    S L  L++  N F    S   G++ NL +LD+S N ++GEI     +FS
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542
                +L+ LDL  N L G +P+SL NL  LE+L L+ N  +G +P  +G +  L+ +YL
Sbjct: 165 -----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYL 589
            +N +S  I   IG L+    LDL  N+  G I      NL  L YL
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYL 265

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 9e-10
 Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 12/198 (6%)

Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
            L  +DLS+NK    + S L +LP+L  L L  N+LS +L   L + S L  LD+ GN+ 
Sbjct: 141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS 506
             LP   +  L  L  LD+S N I   +  L+N         L  L+L++NKL  +LP+S
Sbjct: 199 SDLP-PEIELLSALEELDLSNNSIIELLSSLSNL------KNLSGLELSNNKLE-DLPES 250

Query: 507 LGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566
           +GNL  LE L LS N    S  +S+G+L++LR L LS N +S  +      L    +L  
Sbjct: 251 IGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 567 YGNSWEGVITEKHFRNLS 584
              + + +  + +   L+
Sbjct: 309 LLLTLKALELKLNSILLN 326

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL 507
            +P+  +  L +L S+++S N I G I       S  ++++LE LDL+ N   G++P+SL
Sbjct: 433 FIPND-ISKLRHLQSINLSGNSIRGNI-----PPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV 546
           G L  L  L L+ NS  G +P ++G     RA   SFN 
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRA---SFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 7e-09
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
           L L +  L G +P+ +  L  L+ + LS NS  G++P S+G+++ L  L LS+N  +  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 552 SENIGQLSEPYMLDLYGNSWEG 573
            E++GQL+   +L+L GNS  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS 548
           L++++L+ N + GN+P SLG++  LE L LS NSF GS+P S+G L+ LR L L+ N +S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474
           L L    L G +   +     L ++++ GN        S+G++ +L  LD+SYN   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 475 KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLL 511
            E     S   +++L  L+L  N L G +P +LG  L
Sbjct: 483 PE-----SLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL 406
            + +        Q+    + LS  +I   IP    G I+  L V+DLS N F G I  SL
Sbjct: 433 FIPNDISKLRHLQS----INLSGNSIRGNIPPSL-GSIT-SLEVLDLSYNSFNGSIPESL 486

Query: 407 CSLPSLYWLRLGGNNLSGELSTSL 430
             L SL  L L GN+LSG +  +L
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNL 216
           +++L  L  ++LS   +         + TSL +L+LSY++FN  IP+ L  +++L  LNL
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 217 RSSQLSGSIP 226
             + LSG +P
Sbjct: 498 NGNSLSGRVP 507

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 402 ILSSLCSLPSLYWLRLGG-NNLSGELSTSLPDCS-RLTALDIGGNRFLQLPST-SMGNLC 458
           IL +  +L SLY L L G + L      S PD S  ++ LD+      + PS   + NL 
Sbjct: 696 ILPTGINLKSLYRLNLSGCSRLK-----SFPDISTNISWLDLDETAIEEFPSNLRLENLD 750

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
            L   ++    +   ++ LT   +  +  +L  L L+       LP S+ NL  LE+L +
Sbjct: 751 ELILCEMKSEKLWERVQPLTPLMTMLS-PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809

Query: 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRI---ISENIGQLSEPY 562
                L +LPT I NL  L +L LS     R    IS NI  L+   
Sbjct: 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 369 NAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST 428
           +     T   WF       +  + L N    G I + +  L  L  + L GN++ G +  
Sbjct: 408 DCQFDSTKGKWF-------IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP 460

Query: 429 SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474
           SL   + L  LD+  N F      S+G L +L  L+++ N ++G +
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 32/45 (71%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNL 114
           IP  +  L+ L+ ++LS +S  G +PP++G++++L+ LDLSY + 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 25/208 (12%)

Query: 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQK--LSVIDL 393
            SL +       L S     L     + +L LS+ A+           + +   L  + L
Sbjct: 58  LSLNETGRIPRGLQSL-LQGLTKGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKL 115

Query: 394 SNNKFFGGILSSLC-----SLPSLYWLRLGGNNLSGELSTS----LPDCSRLTALDIGGN 444
           +NN      L  L        P+L  L LG N L G    +    L     L  L++  N
Sbjct: 116 NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175

Query: 445 RFL----QLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKL 499
                  +  +  +   CNL  LD++ N +T E    L    +  ++ +LE L+L  N L
Sbjct: 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSLEVLNLGDNNL 233

Query: 500 GGN-----LPDSLGNLLCLEYLGLSENS 522
                       L   + L  L LS N 
Sbjct: 234 TDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           L  + LS ++    IP  L +I++L  L+L  +  +GSIP+   G++ +LR L+L  N  
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGNSL 502

Query: 247 SGE 249
           SG 
Sbjct: 503 SGR 505

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	636
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
PLN03150	623	hypothetical protein; Provisional	99.09
PLN03150	623	hypothetical protein; Provisional	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG4341	483	consensus F-box protein containing LRR [General fu	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
PRK15386	426	type III secretion protein GogB; Provisional	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.62
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
KOG4308	478	consensus LRR-containing protein [Function unknown	95.21
KOG4308	478	consensus LRR-containing protein [Function unknown	94.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.78
smart00370	26	LRR Leucine-rich repeats, outliers.	91.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.75
smart00370	26	LRR Leucine-rich repeats, outliers.	88.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.16
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.66
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	80.17

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-59  Score=543.76  Aligned_cols=527  Identities=28%  Similarity=0.358  Sum_probs=428.6

Q ss_pred             HHhHHHHHhcc-CCCCCCCCCCCCC------------------------------cccCccccCCCCCCEEeCCCCCCCC
Q 037514           44 EREREALLKFK-GLIDPSARLSSWK------------------------------SPIPEFVYSLKKLKLLDLSESSFSG   92 (636)
Q Consensus        44 ~~~~~~l~~~~-~l~~~~~~~~~w~------------------------------~~~p~~~~~l~~L~~L~Ls~~~i~~   92 (636)
                      +.|+.+++.|| ++.++...+.+|.                              +.+|..|..+++|++|+|++|++++
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~  107 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG  107 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC
Confidence            35788888888 7766655566664                              1233445556666666666666665


Q ss_pred             CCCcccc-CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCC
Q 037514           93 MLPPNIG-NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNC  171 (636)
Q Consensus        93 ~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  171 (636)
                      .+|..+. ++++|++|++++|.+++..+           ...+++|++|++++|.+.+.  ++..++.+++|++|++++|
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----------~~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n  174 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGSIP-----------RGSIPNLETLDLSNNMLSGE--IPNDIGSFSSLKVLDLGGN  174 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccccC-----------ccccCCCCEEECcCCccccc--CChHHhcCCCCCEEECccC
Confidence            5555443 56666666666666554222           34567777777777777654  3456778888888888888


Q ss_pred             cCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccc
Q 037514          172 QLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKE  251 (636)
Q Consensus       172 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~  251 (636)
                      .+.+..|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|
T Consensus       175 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC
Confidence            88777788888888888888888888877888888888888888888888776663 46788888888888888888888


Q ss_pred             hhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecC
Q 037514          252 QFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR  329 (636)
Q Consensus       252 ~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~  329 (636)
                      ..+..++     +|+.|+  .+.+.+.+|..+..+++|++|++++|.+.+.+|. .+.++++|+.|++++|  ...+..+
T Consensus       254 ~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n--~~~~~~~  325 (968)
T PLN00113        254 SSLGNLK-----NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSN--NFTGKIP  325 (968)
T ss_pred             hhHhCCC-----CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCC--ccCCcCC
Confidence            8888777     777776  6677778888888888888888888888877766 7888888888888888  5555666


Q ss_pred             CCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC
Q 037514          330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL  409 (636)
Q Consensus       330 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  409 (636)
                      ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.++...  ++|+.|++++|.+.+..|..+..+
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS--GNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc--CCCCEEECcCCEecccCCHHHhCC
Confidence            777788888888888888888888888888889999999888888888888777  788999999998888888888889


Q ss_pred             CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514          410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL  489 (636)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L  489 (636)
                      ++|+.|++++|++++..|..+..++.|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+.      .++|
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------~~~L  477 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------SKRL  477 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------cccc
Confidence            9999999999999888888888999999999999999988887788899999999999999887776542      3678


Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      +.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514          570 SWEGVITEKHFRNLSGLDYLTISSSNSSLVFN  601 (636)
Q Consensus       570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~  601 (636)
                      ++.+.+|.. +..+++|+.|++++|++....+
T Consensus       558 ~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        558 QLSGEIPKN-LGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cccccCChh-HhcCcccCEEeccCCcceeeCC
Confidence            999999986 7789999999999998765444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-54  Score=502.54  Aligned_cols=517  Identities=31%  Similarity=0.386  Sum_probs=463.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV  156 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  156 (636)
                      .+++.|+|++|.+++.++..|..+++|++|+|++|++++ ++...         +..+++|++|++++|.+++...    
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~---------~~~l~~L~~L~Ls~n~l~~~~p----  135 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI---------FTTSSSLRYLNLSNNNFTGSIP----  135 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH---------hccCCCCCEEECcCCccccccC----
Confidence            579999999999999999999999999999999999874 33221         5589999999999999986521    


Q ss_pred             hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL  236 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  236 (636)
                      .+.+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .++++++|
T Consensus       136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L  214 (968)
T PLN00113        136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSL  214 (968)
T ss_pred             ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCc
Confidence            25689999999999999999999999999999999999999999999999999999999999999987764 48899999


Q ss_pred             CEEEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCE
Q 037514          237 RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS  314 (636)
Q Consensus       237 ~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~  314 (636)
                      ++|++++|.+.+..|..+..++     +|+.|+  .+.+.+.+|..++++++|++|++++|++.+.+|. .+.++++|++
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~  288 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLT-----SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLIS  288 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCC-----CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCE
Confidence            9999999999999999999988     888887  7788899999999999999999999999987877 7899999999


Q ss_pred             EEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECc
Q 037514          315 LYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS  394 (636)
Q Consensus       315 L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls  394 (636)
                      |++++|  ...+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+...  ++|+.|+++
T Consensus       289 L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~--~~L~~L~Ls  364 (968)
T PLN00113        289 LDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--NNLTVLDLS  364 (968)
T ss_pred             EECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--CCCcEEECC
Confidence            999999  6666777778889999999999999999999999999999999999999999999999888  899999999


Q ss_pred             cCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCch
Q 037514          395 NNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI  474 (636)
Q Consensus       395 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  474 (636)
                      +|++.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+
T Consensus       365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  444 (968)
T PLN00113        365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI  444 (968)
T ss_pred             CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence            99999999999999999999999999999999999999999999999999999988888999999999999999999887


Q ss_pred             hhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccccc
Q 037514          475 KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISEN  554 (636)
Q Consensus       475 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  554 (636)
                      +..+.     .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+.+|..+.++++|+.|++++|++.+.+|..
T Consensus       445 ~~~~~-----~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  518 (968)
T PLN00113        445 NSRKW-----DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE  518 (968)
T ss_pred             Chhhc-----cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence            76554     34788999999999998888765 4589999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCcceeeeecCccccccCCC
Q 037514          555 IGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLP  627 (636)
Q Consensus       555 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p  627 (636)
                      +..+++|++|++++|.+++.+|.. |..+++|+.|++++|++....+  ........++.+.+.++.....+|
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIP--KNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             HcCccCCCEEECCCCcccccCChh-HhCcccCCEEECCCCcccccCC--hhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999988875 8899999999999998764433  222223456666666665555555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=333.94  Aligned_cols=406  Identities=22%  Similarity=0.246  Sum_probs=336.0

Q ss_pred             CCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccc
Q 037514          186 SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTL  265 (636)
Q Consensus       186 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L  265 (636)
                      .-+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.+ .....+|+.|+|.+|.|+....+.++.+        
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l--------  148 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSAL--------  148 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhH--------
Confidence            3456888888888877778888888888888888887 66642 2334458888888888876555544444        


Q ss_pred             hhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccC
Q 037514          266 ETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND  345 (636)
Q Consensus       266 ~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~  345 (636)
                                         +.|+.|||+.|.++. ++...|..-.++++|+|++|  .++......|..+.+|.+|.++.
T Consensus       149 -------------------~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N--~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  149 -------------------PALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASN--RITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             -------------------hhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccc--cccccccccccccchheeeeccc
Confidence                               477888888888876 66657777778888888888  55555566677777888888888


Q ss_pred             CCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc
Q 037514          346 CQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE  425 (636)
Q Consensus       346 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  425 (636)
                      |.++...+..|..+++|+.|+|..|+|.-.--..|.++  ++|+.|.+..|.+.......|..+.++++|+|+.|++...
T Consensus       207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL--~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL--PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc--hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            89988888889999999999999999986666778888  8999999999999888888899999999999999999877


Q ss_pred             cCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch
Q 037514          426 LSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD  505 (636)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  505 (636)
                      ...++.++++|+.|++++|.|..+.+..+..+++|++|+|++|+++...+..+..++     .|++|.|++|.+......
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-----HhhhhcccccchHHHHhh
Confidence            778899999999999999999999998999999999999999999987777777665     459999999999977777


Q ss_pred             hhcCCCCCCEEeCcCCccCCccCh---hhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcC
Q 037514          506 SLGNLLCLEYLGLSENSFLGSLPT---SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRN  582 (636)
Q Consensus       506 ~l~~l~~L~~L~Ls~n~~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  582 (636)
                      .|.++++|++|||++|.++..+.+   .|.++++|+.|++.+|++..+...+|.+++.|+.|||.+|.+. +|...+|..
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~  438 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEP  438 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eeccccccc
Confidence            899999999999999998876654   5788999999999999999999999999999999999999998 566677988


Q ss_pred             CCCCCeeeCCCCCCCcccccccccccCcceeeeecCccccccCCCcccCCCC
Q 037514          583 LSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPN  634 (636)
Q Consensus       583 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~  634 (636)
                      + .|++|.+..-  ++.|+|...|+++|-.+.+.-......+.-|+|+-+..
T Consensus       439 m-~Lk~Lv~nSs--sflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~  487 (873)
T KOG4194|consen  439 M-ELKELVMNSS--SFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS  487 (873)
T ss_pred             c-hhhhhhhccc--ceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence            8 9999988665  88999999999987665555444555666788876543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-41  Score=332.42  Aligned_cols=369  Identities=23%  Similarity=0.284  Sum_probs=286.5

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCC-CCCCEEecCCccCCCCCChhhhh
Q 037514           79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL-SSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      ..+.||+++|.++..-+..|-++++|+.+++.+|.++.+|.           ++.. .+|+.|+|.+|.|+.+..  +.+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~-----------f~~~sghl~~L~L~~N~I~sv~s--e~L  145 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR-----------FGHESGHLEKLDLRHNLISSVTS--EEL  145 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc-----------ccccccceeEEeeeccccccccH--HHH
Confidence            55778999999988888888899999999999998888775           4443 448888888888888744  677


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                      ..++.|++|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|.+|.|++|+++ .+|...|.++++|+
T Consensus       146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLE  224 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhh
Confidence            77888888888888888777777777778888888888888766777777778888888888777 66655566677777


Q ss_pred             EEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEc
Q 037514          238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL  317 (636)
Q Consensus       238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L  317 (636)
                      .|+|..|.+.-.                                                    ..-.|..+++|+.|.+
T Consensus       225 ~LdLnrN~iriv----------------------------------------------------e~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  225 SLDLNRNRIRIV----------------------------------------------------EGLTFQGLPSLQNLKL  252 (873)
T ss_pred             hhhccccceeee----------------------------------------------------hhhhhcCchhhhhhhh
Confidence            666666655411                                                    1113444444444444


Q ss_pred             cCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514          318 SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK  397 (636)
Q Consensus       318 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~  397 (636)
                      .+|                          ++...-..+|..+.++++|+|+.|++...-..|+.++  +.|+.|++++|.
T Consensus       253 qrN--------------------------~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~lS~Na  304 (873)
T KOG4194|consen  253 QRN--------------------------DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL--TSLEQLDLSYNA  304 (873)
T ss_pred             hhc--------------------------CcccccCcceeeecccceeecccchhhhhhccccccc--chhhhhccchhh
Confidence            444                          3333344556667777777777777777777777777  788888888888


Q ss_pred             CCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhh
Q 037514          398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL  477 (636)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  477 (636)
                      |....++.+..+++|++|+|+.|+++...+..|..+..|++|.|+.|.+..+..++|..+++|++|||++|.+...+.+.
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence            88888888888999999999999998777788888999999999999999988888999999999999999998777775


Q ss_pred             HHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514          478 TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF  544 (636)
Q Consensus       478 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~  544 (636)
                      -..+..  +++|+.|++.||++....-.+|.++.+|+.|||.+|.|....|.+|..+ .|++|.+..
T Consensus       385 a~~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  385 AVAFNG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhhcc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            555554  4888999999999986666789999999999999999988889999888 888887754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-38  Score=298.42  Aligned_cols=475  Identities=21%  Similarity=0.275  Sum_probs=349.6

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514           79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN  158 (636)
Q Consensus        79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  158 (636)
                      .+..|++++|.+. .+...+.++..|.+|++++|++...+++          ++.+..++.++.++|++..+|   ..++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~a----------ig~l~~l~~l~vs~n~ls~lp---~~i~  111 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAA----------IGELEALKSLNVSHNKLSELP---EQIG  111 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHH----------HHHHHHHHHhhcccchHhhcc---HHHh
Confidence            5677888888877 4455678888888888888888877764          777888888888888888765   4777


Q ss_pred             CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCE
Q 037514          159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR  238 (636)
Q Consensus       159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  238 (636)
                      .+.+|+.++.++|.+.. .+..++.+..|+.++..+|+++. .|+++..+.+|..+++.+|++. .+|...+ +++.|++
T Consensus       112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~  187 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKH  187 (565)
T ss_pred             hhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHh
Confidence            88888888888888765 45567778888888888888877 6778888888888888888887 4443223 3788888


Q ss_pred             EEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514          239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY  316 (636)
Q Consensus       239 L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~  316 (636)
                      +|...|-+. .+|..++.+.     +|+.|+  .|.+. .+| .|..+..|.++++..|++.. +|.+....++++..||
T Consensus       188 ld~~~N~L~-tlP~~lg~l~-----~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPPELGGLE-----SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLD  258 (565)
T ss_pred             cccchhhhh-cCChhhcchh-----hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeee
Confidence            888777665 4566677776     677666  33332 344 78888889999998888876 7777777899999999


Q ss_pred             ccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcC---CCccE---
Q 037514          317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVIS---QKLSV---  390 (636)
Q Consensus       317 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~---~~L~~---  390 (636)
                      +.+|+   ....|++..-+.+|.+|++++|.++ ..|..++++ +|+.|-+.+|.+...-.+.+..-..   +.|+.   
T Consensus       259 LRdNk---lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~  333 (565)
T KOG0472|consen  259 LRDNK---LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK  333 (565)
T ss_pred             ccccc---cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence            99884   3456777788888999999999887 467778888 8999999999876443222111000   11111   


Q ss_pred             -EECccCcCC----cc-CCc---ccCCCCCCcEEEccCCcCCcccCCCCCCC---CCCCEEECCCCCCCCCcchhhcCCC
Q 037514          391 -IDLSNNKFF----GG-ILS---SLCSLPSLYWLRLGGNNLSGELSTSLPDC---SRLTALDIGGNRFLQLPSTSMGNLC  458 (636)
Q Consensus       391 -L~ls~n~l~----~~-~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~  458 (636)
                       =.++..+-.    .. .+.   ....+.+.+.|++++-+++ .+|+.....   .-.+..+++.|++.+.+.. +..+.
T Consensus       334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lk  411 (565)
T KOG0472|consen  334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELK  411 (565)
T ss_pred             cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHH
Confidence             111111110    01 111   1223556788888888887 455433222   2377889999988877653 44444


Q ss_pred             CCCe-EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCC
Q 037514          459 NLHS-LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHL  537 (636)
Q Consensus       459 ~L~~-L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L  537 (636)
                      .+.+ +.+++|.+ +.+|..+..+     +.|..|++++|.+. .+|..++.+..|+.||++.|++. .+|+++..+..+
T Consensus       412 elvT~l~lsnn~i-sfv~~~l~~l-----~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l  483 (565)
T KOG0472|consen  412 ELVTDLVLSNNKI-SFVPLELSQL-----QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL  483 (565)
T ss_pred             HHHHHHHhhcCcc-ccchHHHHhh-----hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence            4443 45555555 4777777655     55699999999888 78999999999999999999998 899999888889


Q ss_pred             CeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          538 RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       538 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                      +.+-.++|++..+.+..+.++..|.+||+.+|.+. .+|.. ++++++|++|+++||++.
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-hccccceeEEEecCCccC
Confidence            99999999999988888999999999999999998 57775 899999999999999654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=300.07  Aligned_cols=439  Identities=23%  Similarity=0.292  Sum_probs=212.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      ++|++++++..++.|+.++|+++ .+|.+++.+.+|+.|++++|.+...+.+          ++.+-.|+.++..+|+++
T Consensus        82 ~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~----------i~~~~~l~dl~~~~N~i~  150 (565)
T KOG0472|consen   82 QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDS----------IGRLLDLEDLDATNNQIS  150 (565)
T ss_pred             hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCch----------HHHHhhhhhhhccccccc
Confidence            34444444445555555555544 4444455555555555555554444332          444445555555555555


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF  228 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  228 (636)
                      ..|.   .+..+.+|..+++.+|.+....+..+. ++.|++||+..|.+.. +|..++.+.+|..|+++.|++. .+|+ 
T Consensus       151 slp~---~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lPe-  223 (565)
T KOG0472|consen  151 SLPE---DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLPE-  223 (565)
T ss_pred             cCch---HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCCC-
Confidence            4432   444455555555555555443333322 5555555555554443 4555555555555555555554 4442 


Q ss_pred             CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCccccccccc-CCCCCCEEEccCCcCccccChhhhc
Q 037514          229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIG-QLAELVALNLYRNSWKGIITENHFQ  307 (636)
Q Consensus       229 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~i~~~~~~  307 (636)
                       |.++..|++++++.|++.                            .+|.... ++.++.+||+..|++.. +|+ .+.
T Consensus       224 -f~gcs~L~Elh~g~N~i~----------------------------~lpae~~~~L~~l~vLDLRdNklke-~Pd-e~c  272 (565)
T KOG0472|consen  224 -FPGCSLLKELHVGENQIE----------------------------MLPAEHLKHLNSLLVLDLRDNKLKE-VPD-EIC  272 (565)
T ss_pred             -CCccHHHHHHHhcccHHH----------------------------hhHHHHhcccccceeeecccccccc-Cch-HHH
Confidence             344555555555555444                            3444433 56666666666666665 555 455


Q ss_pred             CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCC--CCcceec-------ccccc-------
Q 037514          308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ--ASVFKLT-------LSNAA-------  371 (636)
Q Consensus       308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~-------L~~n~-------  371 (636)
                      .+.+|++||+++|.   ....+.+++.+ .|+.|.+.||.+...--+.+..-  .-|++|.       ++.-.       
T Consensus       273 lLrsL~rLDlSNN~---is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~  348 (565)
T KOG0472|consen  273 LLRSLERLDLSNND---ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM  348 (565)
T ss_pred             HhhhhhhhcccCCc---cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence            66666666666662   22344455555 66666666665432111000000  0011110       00000       


Q ss_pred             --CCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC--CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCC
Q 037514          372 --ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL--PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL  447 (636)
Q Consensus       372 --~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  447 (636)
                        ..+..|+.. ..  .+.+.|++++-+++......|..-  .-...+++++|++. ++|..+..+..+.+.-+..|+..
T Consensus       349 t~~~~~~~~~~-~~--i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  349 TLPSESFPDIY-AI--ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             CCCCCcccchh-hh--hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence              001111111 11  344555555555544333333221  12445555565554 44544444444433333333333


Q ss_pred             CCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCcc
Q 037514          448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL  527 (636)
Q Consensus       448 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~  527 (636)
                      +.++..+..+++|..|++++|.+. .+|...+.+     ..|+.|+++.|++. ..|..+..+..++.+-.++|++....
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-----v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd  497 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL-----VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD  497 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhh-----hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence            444444555666666666655554 333333322     23466666666555 55555555555555555556665444


Q ss_pred             ChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          528 PTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       528 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      |+.+.++.+|..||+.+|.+.. +|..++++++|++|+++||++.
T Consensus       498 ~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            5556666666666666666544 3445666666666666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.1e-35  Score=303.21  Aligned_cols=474  Identities=25%  Similarity=0.328  Sum_probs=265.8

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .||..+.....+..|+++.|.+-...-+.+.+..+|+.||+++|.+...+..          +..+.+|+.|+++.|.|.
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~----------it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ----------ITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCch----------hhhHHHHhhcccchhhHh
Confidence            4666666556677777777765432223344455588888888777765543          666777777777777777


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF  228 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  228 (636)
                      ..|.   ...++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+.. +|..+..++.+..+..++|.....    
T Consensus        82 ~vp~---s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~----  152 (1081)
T KOG0618|consen   82 SVPS---SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQR----  152 (1081)
T ss_pred             hCch---hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhh----
Confidence            7653   6677777777777777655 356677777777777777777765 677777777777777777732212    


Q ss_pred             CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcC
Q 037514          229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQN  308 (636)
Q Consensus       229 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~  308 (636)
                       ++... ++++++..|.+.+.++..+..+.     ..-.|..|.+.   ...+..+.+|+.+....|++...     --.
T Consensus       153 -lg~~~-ik~~~l~~n~l~~~~~~~i~~l~-----~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~  217 (1081)
T KOG0618|consen  153 -LGQTS-IKKLDLRLNVLGGSFLIDIYNLT-----HQLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EIS  217 (1081)
T ss_pred             -hcccc-chhhhhhhhhcccchhcchhhhh-----eeeecccchhh---hhhhhhccchhhhhhhhcccceE-----Eec
Confidence             22222 66777777766665555555443     21111123222   12233444444444444444331     112


Q ss_pred             CCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCc
Q 037514          309 LTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKL  388 (636)
Q Consensus       309 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L  388 (636)
                      -++++.|+.++|+..    .........+++.++++.+.+.+ +|+|+..+.+|+.++..+|.++ ..|..+...  .+|
T Consensus       218 g~~l~~L~a~~n~l~----~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L  289 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLT----TLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRI--TSL  289 (1081)
T ss_pred             CcchheeeeccCcce----eeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhh--hhH
Confidence            344555555555322    11122233455555555555542 3355555555555555555553 333333333  455


Q ss_pred             cEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCC-CCCCCCC-CCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514          389 SVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSR-LTALDIGGNRFLQLPSTSMGNLCNLHSLDIS  466 (636)
Q Consensus       389 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  466 (636)
                      +.|.+..|.+.. +|.....++.|++|+|..|++. ..|+ .+.-... |..|..+.|++...+...=...+.|+.|++.
T Consensus       290 ~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  290 VSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            555555555532 2333444555555555555554 2222 1222222 4445555555544432212234556666777


Q ss_pred             CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514          467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV  546 (636)
Q Consensus       467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  546 (636)
                      +|.+++.....+..+     +.|+.|+|++|++.......+.++..|++|+||+|++. .+|..+..+..|++|...+|+
T Consensus       368 nN~Ltd~c~p~l~~~-----~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNF-----KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             cCcccccchhhhccc-----cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence            777665544444322     45577777777776433445666677777777777766 566667777777777777776


Q ss_pred             ccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCC
Q 037514          547 MSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      +... | .+.+++.|+.+|++.|+++...-...... ++|++||++||.
T Consensus       442 l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  442 LLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             eeec-h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            6553 3 56667777777777776654332222222 677777777773

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-35  Score=301.51  Aligned_cols=462  Identities=26%  Similarity=0.295  Sum_probs=243.5

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514           79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN  158 (636)
Q Consensus        79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  158 (636)
                      +|+.||+++|.++ ..|..+..+.+|+.|+++.|.|...+..          ..++.+|++++|.+|.+...|.   .+.
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s----------~~~~~~l~~lnL~~n~l~~lP~---~~~  111 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSS----------CSNMRNLQYLNLKNNRLQSLPA---SIS  111 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchh----------hhhhhcchhheeccchhhcCch---hHH
Confidence            3666666666654 5566666666666666666666655532          5666666666666666666543   566


Q ss_pred             CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCE
Q 037514          159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR  238 (636)
Q Consensus       159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  238 (636)
                      .+.+|++|++++|.+. .+|..+..++.++.+..++|.-...++.    .. ++.+++..|.+.+.++. .+..+..  .
T Consensus       112 ~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~-~i~~l~~--~  182 (1081)
T KOG0618|consen  112 ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLI-DIYNLTH--Q  182 (1081)
T ss_pred             hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhc-chhhhhe--e
Confidence            6666666666666654 3455555666666666666621111221    11 56666666665554432 2333333  4


Q ss_pred             EEcccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514          239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY  316 (636)
Q Consensus       239 L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~  316 (636)
                      |+|.+|.+...   .+..++     .++.+.  .+++...    .-.-++|+.|+.+.|.++...+   -..-.+|++++
T Consensus       183 ldLr~N~~~~~---dls~~~-----~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~d  247 (1081)
T KOG0618|consen  183 LDLRYNEMEVL---DLSNLA-----NLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV---HPVPLNLQYLD  247 (1081)
T ss_pred             eecccchhhhh---hhhhcc-----chhhhhhhhcccceE----EecCcchheeeeccCcceeecc---ccccccceeee
Confidence            66666665511   122222     333333  2222110    0122456666666666553211   12234566666


Q ss_pred             ccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccC
Q 037514          317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNN  396 (636)
Q Consensus       317 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n  396 (636)
                      ++.|.  +. ..+.....+.+|+.+.+..|.+. .+|..+....+|+.|.+..|.+....| ...+.  ..|++|++..|
T Consensus       248 is~n~--l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~--~sL~tLdL~~N  320 (1081)
T KOG0618|consen  248 ISHNN--LS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP-FLEGL--KSLRTLDLQSN  320 (1081)
T ss_pred             cchhh--hh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC-ccccc--ceeeeeeehhc
Confidence            66652  22 22244445566666666666663 455555556666666666666654333 22223  56666666666


Q ss_pred             cCCccCCcccCCCC-CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514          397 KFFGGILSSLCSLP-SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK  475 (636)
Q Consensus       397 ~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  475 (636)
                      ++....+..+.... .|..++.+.|.+.......=...+.|+.|++.+|.++...-..+.+.++|+.|+|++|++...+.
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence            66433332222222 24555555555542221112234456666666666665443346666666666666666654443


Q ss_pred             hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc
Q 037514          476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI  555 (636)
Q Consensus       476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  555 (636)
                      ..+..+     +.|+.|+||||+++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|.++......-
T Consensus       401 s~~~kl-----e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  401 SKLRKL-----EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             HHHhch-----HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            333332     34466666666666 55666666666666666666665 455 45666666666666666655422222


Q ss_pred             cCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          556 GQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       556 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      ..-+.|++||++||... .+....|..+..+..+++.-+
T Consensus       473 ~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence            22256666666666543 344445555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.9e-34  Score=280.94  Aligned_cols=373  Identities=24%  Similarity=0.349  Sum_probs=233.4

Q ss_pred             CCCCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChh
Q 037514           76 SLKKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL  154 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  154 (636)
                      -++.++-.|+++|.++ +..|.+..+++++++|.|...++..++.+          ++.+.+|++|.+++|++..+.   
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE----------L~~lqkLEHLs~~HN~L~~vh---   71 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE----------LSRLQKLEHLSMAHNQLISVH---   71 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH----------HHHHhhhhhhhhhhhhhHhhh---
Confidence            4568899999999999 67899999999999999999888776654          888999999999999988874   


Q ss_pred             hhhCCCCCCCEEEccCCcCC-CCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514          155 QVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM  233 (636)
Q Consensus       155 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  233 (636)
                      +.++.+|.|+.+.+.+|++. .-+|..+-.+..|++|||++|++.. .|..+...+++-.|+|++|+|. .+|.-.+-++
T Consensus        72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL  149 (1255)
T KOG0444|consen   72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL  149 (1255)
T ss_pred             hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence            47888899999999999874 2355566678888888888888877 7888888888888888888887 7775447777


Q ss_pred             CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCC
Q 037514          234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN  313 (636)
Q Consensus       234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~  313 (636)
                      +.|-.|||++|++..                            +|..+..+..|++|+|++|.+.-. ...-+..+++|+
T Consensus       150 tDLLfLDLS~NrLe~----------------------------LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~  200 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLEM----------------------------LPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLS  200 (1255)
T ss_pred             HhHhhhccccchhhh----------------------------cCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhh
Confidence            777788888777663                            233344445677777777765421 000122233333


Q ss_pred             EEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEEC
Q 037514          314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDL  393 (636)
Q Consensus       314 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l  393 (636)
                      .|.+++.+                         .-...+|..+..+.+|..+|++.|.+. ..|+               
T Consensus       201 vLhms~Tq-------------------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe---------------  239 (1255)
T KOG0444|consen  201 VLHMSNTQ-------------------------RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE---------------  239 (1255)
T ss_pred             hhhccccc-------------------------chhhcCCCchhhhhhhhhccccccCCC-cchH---------------
Confidence            33333321                         001134444444555555555555443 3333               


Q ss_pred             ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC-C
Q 037514          394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT-G  472 (636)
Q Consensus       394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  472 (636)
                                 .+.++++|+.|+|++|+++ .+........+|+.|+++.|+++..+. ++..+++|+.|.+.+|+++ .
T Consensus       240 -----------cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  240 -----------CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             -----------HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCccccc
Confidence                       4444444444444444444 222223333445555555555544332 3455555555555555543 1


Q ss_pred             chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc
Q 037514          473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS  552 (636)
Q Consensus       473 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  552 (636)
                      -+|..++.+     ..|+.+..++|.+. .+|+++..|..|+.|.|++|++. .+|+++.-++.|+.||+..|.-.-.+|
T Consensus       307 GiPSGIGKL-----~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  307 GIPSGIGKL-----IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             CCccchhhh-----hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            123333322     23355555555555 56666666666666666666665 566666666666666666665444444


Q ss_pred             c
Q 037514          553 E  553 (636)
Q Consensus       553 ~  553 (636)
                      .
T Consensus       380 K  380 (1255)
T KOG0444|consen  380 K  380 (1255)
T ss_pred             C
Confidence            3

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-31  Score=265.53  Aligned_cols=372  Identities=23%  Similarity=0.285  Sum_probs=219.1

Q ss_pred             CCEEEccCCcCC-CCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEc
Q 037514          163 LVELHLSNCQLN-FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDL  241 (636)
Q Consensus       163 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L  241 (636)
                      .+-.|+++|.++ +..|.....+++++-|.|...++.. +|+.++.+.+|++|.+++|++... . ..++.++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~v-h-GELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISV-H-GELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhh-h-hhhccchhhHHHhh
Confidence            334444444444 2344445555555555555555544 555666666666666666655421 1 11444555555555


Q ss_pred             ccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCC
Q 037514          242 AINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN  321 (636)
Q Consensus       242 ~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~  321 (636)
                      ..|++..                          .-+|..+..+..|+.|||++|++.. +|. .+..-.++-.|+|++| 
T Consensus        86 R~N~LKn--------------------------sGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AKn~iVLNLS~N-  136 (1255)
T KOG0444|consen   86 RDNNLKN--------------------------SGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAKNSIVLNLSYN-  136 (1255)
T ss_pred             hcccccc--------------------------CCCCchhcccccceeeecchhhhhh-cch-hhhhhcCcEEEEcccC-
Confidence            5554432                          1234444555566666666666654 444 3444444444444433 


Q ss_pred             CccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc
Q 037514          322 KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG  401 (636)
Q Consensus       322 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  401 (636)
                                               +|..+....+.++..|-.||+++|++...+|. ...+  ..|++|++++|.+...
T Consensus       137 -------------------------~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL--~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  137 -------------------------NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRL--SMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             -------------------------ccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHH--hhhhhhhcCCChhhHH
Confidence                                     33333333445555555666666665543333 3333  4566666666666544


Q ss_pred             CCcccCCCCCCcEEEccCCcCC-cccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514          402 ILSSLCSLPSLYWLRLGGNNLS-GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA  480 (636)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  480 (636)
                      ....+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+...+ +.+..+++|+.|++++|+++. .......
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~ite-L~~~~~~  266 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITE-LNMTEGE  266 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceee-eeccHHH
Confidence            4444555666777777765533 335666777777777777777776543 356677777777777777762 2222222


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC-CccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL-GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS  559 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  559 (636)
                      +     .+|++|++|.|+++ .+|.++..++.|+.|.+.+|++. .-+|+.++.+.+|+++..++|.+ ...|+.+..+.
T Consensus       267 W-----~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~  339 (1255)
T KOG0444|consen  267 W-----ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCV  339 (1255)
T ss_pred             H-----hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhH
Confidence            2     34577777777777 67777777777888877777764 24677777777787777777766 34677777778


Q ss_pred             CCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccc
Q 037514          560 EPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHD  605 (636)
Q Consensus       560 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~  605 (636)
                      .|+.|.|+.|++. .+|+. ..-++.|+.||+..|+..+..+-..+
T Consensus       340 kL~kL~L~~NrLi-TLPea-IHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLI-TLPEA-IHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             HHHHhccccccee-echhh-hhhcCCcceeeccCCcCccCCCCcch
Confidence            8888888888777 46765 55677778888887766555544333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=3.4e-29  Score=236.55  Aligned_cols=164  Identities=21%  Similarity=0.267  Sum_probs=137.9

Q ss_pred             HhhcCCcccCCC---CCcccCHHhHHHHHhccCCCCCCCCCCCCCcccCccccCCCCCCEEeCCCCCCCCCCCccccCCC
Q 037514           26 AIGIGSNYDCGN---FSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLS  102 (636)
Q Consensus        26 ~~~~~~~~~~~~---~~~~c~~~~~~~l~~~~~l~~~~~~~~~w~~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~  102 (636)
                      +.+++.+|.|.+   ..|.|..++..                    .+|..+.  +....++|..|+|+.+.|.+|+.++
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~--------------------eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~   91 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDCRGKGLT--------------------EVPANLP--PETVEIRLDQNQISSIPPGAFKTLH   91 (498)
T ss_pred             cccCCCCcccCCCCCceEEccCCCcc--------------------cCcccCC--CcceEEEeccCCcccCChhhccchh
Confidence            456777788888   77888765432                    2332222  2678899999999988889999999


Q ss_pred             CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCC-ccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514          103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEG-MKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF  181 (636)
Q Consensus       103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  181 (636)
                      +||.||||+|+|+.+.+.+         |.++++|..|-+.+ |+|+.++.  +.|+++..|+.|.+.-|++..+...+|
T Consensus        92 ~LRrLdLS~N~Is~I~p~A---------F~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLllNan~i~Cir~~al  160 (498)
T KOG4237|consen   92 RLRRLDLSKNNISFIAPDA---------FKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLLNANHINCIRQDAL  160 (498)
T ss_pred             hhceecccccchhhcChHh---------hhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhcChhhhcchhHHHH
Confidence            9999999999999988765         99999988888777 99999976  799999999999999999999999999


Q ss_pred             cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCC
Q 037514          182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS  222 (636)
Q Consensus       182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~  222 (636)
                      ..+++|..|.+.+|.+..+.-..|..+.+++++.+..|.+.
T Consensus       161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            99999999999999998854448889999999999888754

>PLN03210 Resistant to P

Probab=99.92  E-value=1.9e-23  Score=242.58  Aligned_cols=243  Identities=22%  Similarity=0.229  Sum_probs=104.0

Q ss_pred             cCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC
Q 037514          282 GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS  361 (636)
Q Consensus       282 ~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  361 (636)
                      +.+++|++|++++|.....+|. .+.++++|+.|++++|  .....++... .+.+|+.|++++|.....+|..   ..+
T Consensus       654 s~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~n  726 (1153)
T PLN03210        654 SMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRC--ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STN  726 (1153)
T ss_pred             ccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCC--CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCC
Confidence            3445566666665554444554 4555666666666555  2222222222 3445555555555433333321   234


Q ss_pred             cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc-------cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCC
Q 037514          362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG-------GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS  434 (636)
Q Consensus       362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  434 (636)
                      |++|++++|.+.. +|..+ .+  ++|++|++.++....       ..+......++|+.|++++|...+.+|..+.+++
T Consensus       727 L~~L~L~~n~i~~-lP~~~-~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~  802 (1153)
T PLN03210        727 ISWLDLDETAIEE-FPSNL-RL--ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH  802 (1153)
T ss_pred             cCeeecCCCcccc-ccccc-cc--cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence            4555555554432 22221 11  444444444422110       0011111223445555555444444444444555


Q ss_pred             CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514          435 RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE  514 (636)
Q Consensus       435 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  514 (636)
                      +|+.|++++|...+..|..+ .+++|+.|++++|.....+|..        ..+|+.|++++|.++ .+|..+..+++|+
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~  872 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--------STNISDLNLSRTGIE-EVPWWIEKFSNLS  872 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--------ccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence            55555555443222222212 3444555555544332222221        133444555544444 3444444444555


Q ss_pred             EEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      .|++++|.-...+|..+..+++|+.+++++|
T Consensus       873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             EEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            5555444333334444444444444444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.9e-22  Score=234.28  Aligned_cols=307  Identities=21%  Similarity=0.205  Sum_probs=166.7

Q ss_pred             CCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcc
Q 037514          163 LVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA  242 (636)
Q Consensus       163 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~  242 (636)
                      |+.|.+.++.+.. .|..| ...+|++|++.+|.+.. ++.++..+++|+.|+++++...+.+|+  ++.+++|+.|+++
T Consensus       591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~  665 (1153)
T PLN03210        591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS  665 (1153)
T ss_pred             cEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence            4555554444432 22222 23445555555544443 344444445555555544433223332  3344455555554


Q ss_pred             cccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCC
Q 037514          243 INGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNK  322 (636)
Q Consensus       243 ~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~  322 (636)
                      +|...                           ..+|..++.+++|+.|++++|...+.+|.. + ++++|+.|++++|  
T Consensus       666 ~c~~L---------------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc--  714 (1153)
T PLN03210        666 DCSSL---------------------------VELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGC--  714 (1153)
T ss_pred             CCCCc---------------------------cccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCC--
Confidence            44322                           234455566667777777776544445542 2 5677777777776  


Q ss_pred             ccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC-------CcchhhHHhhcCCCccEEECcc
Q 037514          323 SLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS-------DTIPDWFWGVISQKLSVIDLSN  395 (636)
Q Consensus       323 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~-------~~~~~~~~~~~~~~L~~L~ls~  395 (636)
                      ......+.   ...+|++|+++++.+. .+|..+ .+++|++|.+.++...       ...+..+...  ++|+.|++++
T Consensus       715 ~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~--~sL~~L~Ls~  787 (1153)
T PLN03210        715 SRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS--PSLTRLFLSD  787 (1153)
T ss_pred             CCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc--ccchheeCCC
Confidence            22222222   1346777777777664 344433 4566666666653321       1111111112  5677777777


Q ss_pred             CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514          396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK  475 (636)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  475 (636)
                      |.....+|..+..+++|+.|++++|...+.+|..+ .+++|++|++++|......|.   ..++|+.|++++|.++ .+|
T Consensus       788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP  862 (1153)
T PLN03210        788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVP  862 (1153)
T ss_pred             CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cCh
Confidence            76666667777777777777777765444556554 567777777777654433332   2356777777777775 344


Q ss_pred             hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc
Q 037514          476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS  522 (636)
Q Consensus       476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  522 (636)
                      ..+.     .+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       863 ~si~-----~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        863 WWIE-----KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHHh-----cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            4333     23566777777754333566666677777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=3.3e-26  Score=216.48  Aligned_cols=395  Identities=21%  Similarity=0.241  Sum_probs=196.4

Q ss_pred             CCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcC-CcCCCCCCCCCCCCCCCCCEEE
Q 037514          162 SLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS-SQLSGSIPKFPPGKMCNLRRLD  240 (636)
Q Consensus       162 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L~  240 (636)
                      .-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|+ .+|...|+++..++.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            456777778888877778888888888888888888887788888887776665555 7776 66666688888888888


Q ss_pred             cccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCC
Q 037514          241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSS  320 (636)
Q Consensus       241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n  320 (636)
                      +.-|++.....+.|..++                           ++..|.+..|.+.. ++...|..+..++.+.+..|
T Consensus       147 lNan~i~Cir~~al~dL~---------------------------~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLP---------------------------SLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             cChhhhcchhHHHHHHhh---------------------------hcchhcccchhhhh-hccccccchhccchHhhhcC
Confidence            887777776666666555                           44445555554443 33334555555555555544


Q ss_pred             CCccE----------EecCCCCCCCCCccEEEccCCCCCcCCChhhcCC-CCcceeccccccCCCcch-hhHHhhcCCCc
Q 037514          321 NKSLV----------FTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ-ASVFKLTLSNAAISDTIP-DWFWGVISQKL  388 (636)
Q Consensus       321 ~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L  388 (636)
                      +....          ...+.+++......-..+.+..+....+..+... +.+..--.+.+...+..| ..|..+  ++|
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L--~~L  276 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL--PNL  276 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc--ccc
Confidence            21000          0011111111111112222222221111111100 011100111111111212 223333  445


Q ss_pred             cEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514          389 SVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN  468 (636)
Q Consensus       389 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  468 (636)
                      +.|++++|+++++-+.+|.....+++|.|..|++.......|.++..|+.|+|++|+|+...|.+|..+..|.+|.+-.|
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            55555555554444444444445555555555444333344444455555555555555544444544445555554444


Q ss_pred             cCCCc-----hhhhHHh------hhcCCCCcccEEEcccCcCCCC---Cchhh---------cCCCCCCEEeCcCCccCC
Q 037514          469 HITGE-----IKELTNA------FSACNVSTLETLDLASNKLGGN---LPDSL---------GNLLCLEYLGLSENSFLG  525 (636)
Q Consensus       469 ~l~~~-----~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~---~~~~l---------~~l~~L~~L~Ls~n~~~~  525 (636)
                      ++.-.     .-+.+..      -.-.....++.+.+++..+...   .|+..         ..++.+....=-.|....
T Consensus       357 p~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk  436 (498)
T KOG4237|consen  357 PFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK  436 (498)
T ss_pred             cccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh
Confidence            33200     0000000      0000112334444444433311   11111         122233322222222333


Q ss_pred             ccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          526 SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       526 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      .+|..+.  ..-.++++.+|.++.+..+   .+.+| .+|+++|++. .+....|.+++.|..|.|++|
T Consensus       437 ~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~-~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  437 LLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS-SLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCcee-hhhcccccchhhhheeEEecC
Confidence            4454332  2456778888887765444   45666 7888888887 566677888888888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=7.5e-20  Score=197.28  Aligned_cols=135  Identities=23%  Similarity=0.297  Sum_probs=87.2

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      ..-..|++++++++ .+|..+.  ++|+.|++++|+++.++.             ..++|++|++++|+++.+|..    
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~-------------lp~~Lk~LdLs~N~LtsLP~l----  260 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-------------LPPELRTLEVSGNQLTSLPVL----  260 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC-------------CCCCCcEEEecCCccCcccCc----
Confidence            45678888888887 5777665  478888888888887542             136778888888887776531    


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                        .++|+.|++++|.+... |..   .++|+.|++++|+++. +|..   .++|++|++++|++. .+|..+    .+|+
T Consensus       261 --p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~-~Lp~lp----~~L~  325 (788)
T PRK15387        261 --PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPALP----SELC  325 (788)
T ss_pred             --ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccc-cCCCCc----cccc
Confidence              35677777777776542 221   2456677777777765 4432   356777777777766 344321    3455


Q ss_pred             EEEcccccCc
Q 037514          238 RLDLAINGFS  247 (636)
Q Consensus       238 ~L~L~~n~~~  247 (636)
                      .|++++|.++
T Consensus       326 ~L~Ls~N~L~  335 (788)
T PRK15387        326 KLWAYNNQLT  335 (788)
T ss_pred             ccccccCccc
Confidence            6666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.4e-19  Score=195.22  Aligned_cols=63  Identities=27%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc
Q 037514          488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI  555 (636)
Q Consensus       488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  555 (636)
                      +|+.|++++|+++ .+|..   ..+|+.|++++|++. .+|..+.++++|+.|++++|++++..+..+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            3455555555554 23322   123445555555554 445555555555555555555555444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=4.8e-19  Score=179.27  Aligned_cols=208  Identities=26%  Similarity=0.291  Sum_probs=125.1

Q ss_pred             CCccEEECccCcCCccCCcccCCCC---CCcEEEccCCcCCc----ccCCCCCCC-CCCCEEECCCCCCCCC----cchh
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLP---SLYWLRLGGNNLSG----ELSTSLPDC-SRLTALDIGGNRFLQL----PSTS  453 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~  453 (636)
                      ++|++|++++|.+.+..+..+..+.   +|++|++++|++.+    .+...+..+ ++|++|++++|.+++.    ....
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            4555555555555433333333222   36666666666552    122233444 6777777777777632    2234


Q ss_pred             hcCCCCCCeEeCcCCcCCCchhhhH-HhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCccC
Q 037514          454 MGNLCNLHSLDISYNHITGEIKELT-NAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGSLP  528 (636)
Q Consensus       454 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~p  528 (636)
                      +..+++|++|++++|.+++.....+ ..+...  ++|+.|++++|.+++.    +...+..+++|++|++++|.+.+...
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKAN--CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC--CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            5566778888888887764322222 222222  6778888888877633    23445677888888888888765333


Q ss_pred             hhhh-----CCCCCCeEeCcCccccc----cccccccCCCCCCEEECcCCcceeecCh---hhhcCC-CCCCeeeCCCCC
Q 037514          529 TSIG-----NLSHLRALYLSFNVMSR----IISENIGQLSEPYMLDLYGNSWEGVITE---KHFRNL-SGLDYLTISSSN  595 (636)
Q Consensus       529 ~~l~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l-~~L~~L~ls~n~  595 (636)
                      ..+.     ..+.|++|++++|.++.    .+...+..++.|+++++++|.+...-..   .++... +.|+++++.+|+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            3222     23688888888888862    2334556678888999999888743111   123444 788888888873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.2e-18  Score=176.30  Aligned_cols=191  Identities=22%  Similarity=0.212  Sum_probs=94.6

Q ss_pred             ccCCCCCCcEEEccCCcCCcccCCCCCCCC---CCCEEECCCCCCCCC----cchhhcCC-CCCCeEeCcCCcCCCchhh
Q 037514          405 SLCSLPSLYWLRLGGNNLSGELSTSLPDCS---RLTALDIGGNRFLQL----PSTSMGNL-CNLHSLDISYNHITGEIKE  476 (636)
Q Consensus       405 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~  476 (636)
                      .+..+++|++|++++|.+.+..+..+..+.   +|++|++++|++.+.    ....+..+ ++|+.|++++|.+++....
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            344456666666666666533333332222   366666666666531    11223344 5666666666666543222


Q ss_pred             hHH-hhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccc
Q 037514          477 LTN-AFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVM  547 (636)
Q Consensus       477 ~~~-~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l  547 (636)
                      .+. .+..  ++.|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.    ++..+..+++|++|++++|.+
T Consensus       156 ~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         156 ALAKALRA--NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHh--CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            221 1221  24556666666666532    223344445666666666665432    223344556666666666666


Q ss_pred             ccccccccc-----CCCCCCEEECcCCcceeecCh---hhhcCCCCCCeeeCCCCCCC
Q 037514          548 SRIISENIG-----QLSEPYMLDLYGNSWEGVITE---KHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       548 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~ls~n~~~  597 (636)
                      ++.....+.     ..+.|+.|++++|.++.....   ..+..+++|+++++++|.+.
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            542222211     135666666666655411110   12344456666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.8e-17  Score=180.17  Aligned_cols=100  Identities=32%  Similarity=0.439  Sum_probs=45.8

Q ss_pred             CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514          410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL  489 (636)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L  489 (636)
                      ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++.++. .+  .++|++|++++|+++.. |..+.       .+|
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~L-P~~l~-------~sL  390 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNL-PENLP-------AAL  390 (754)
T ss_pred             ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCC-CHhHH-------HHH
Confidence            345555555555542 333332  455555555555554322 12  23555555555555532 22221       134


Q ss_pred             cEEEcccCcCCCCCchhh----cCCCCCCEEeCcCCccC
Q 037514          490 ETLDLASNKLGGNLPDSL----GNLLCLEYLGLSENSFL  524 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~~~  524 (636)
                      +.|++++|++. .+|..+    ..++.+..|++.+|++.
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            55555555555 333322    22345555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=2.9e-17  Score=178.64  Aligned_cols=247  Identities=23%  Similarity=0.336  Sum_probs=142.3

Q ss_pred             CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514          286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL  365 (636)
Q Consensus       286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  365 (636)
                      +...|++++++++. +|. .+  .++++.|++++|.+.   .++..+.  .+|++|++++|.+.. +|..+.  .+|+.|
T Consensus       179 ~~~~L~L~~~~Lts-LP~-~I--p~~L~~L~Ls~N~Lt---sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L  246 (754)
T PRK15370        179 NKTELRLKILGLTT-IPA-CI--PEQITTLILDNNELK---SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEM  246 (754)
T ss_pred             CceEEEeCCCCcCc-CCc-cc--ccCCcEEEecCCCCC---cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEE
Confidence            34556666666554 443 12  235666666666322   1222221  356666666666652 344332  357777


Q ss_pred             ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC
Q 037514          366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR  445 (636)
Q Consensus       366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  445 (636)
                      ++++|.+. .+|..+.    .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|++|++++|.
T Consensus       247 ~Ls~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        247 ELSINRIT-ELPERLP----SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             ECcCCccC-cCChhHh----CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence            77777766 3344332    467777777777753 444332  467777777777763 444332  367777777777


Q ss_pred             CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCC
Q 037514          446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG  525 (636)
Q Consensus       446 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~  525 (636)
                      ++.++.. +  .++|+.|++++|.+++ +|..+       .++|+.|++++|+++ .+|..+.  ++|+.|++++|.+. 
T Consensus       316 Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l-------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-  380 (754)
T PRK15370        316 LTALPET-L--PPGLKTLEAGENALTS-LPASL-------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-  380 (754)
T ss_pred             cccCCcc-c--cccceeccccCCcccc-CChhh-------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-
Confidence            7765432 1  2567777777777764 33322       146677777777776 4555443  56777777777776 


Q ss_pred             ccChhhhCCCCCCeEeCcCcccccc---ccccccCCCCCCEEECcCCcce
Q 037514          526 SLPTSIGNLSHLRALYLSFNVMSRI---ISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       526 ~~p~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      .+|..+.  ..|+.|++++|++...   +|..+..++.+..+++.+|++.
T Consensus       381 ~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        381 NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4555443  3577777777777643   1222334466777777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=3.7e-19  Score=149.68  Aligned_cols=161  Identities=27%  Similarity=0.438  Sum_probs=144.1

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      +.++++++.|.||+|+++ .+|..++.+.+|+.|++++|+|+.++..          ++.+++|+.|+++-|++...|  
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~----------issl~klr~lnvgmnrl~~lp--   95 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTS----------ISSLPKLRILNVGMNRLNILP--   95 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChh----------hhhchhhhheecchhhhhcCc--
Confidence            446789999999999998 6777899999999999999999998875          999999999999999998875  


Q ss_pred             hhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514          154 LQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK  232 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  232 (636)
                       ..|+.+|.|++|||.+|++.. ..|..|-.++.|+.|+|++|.+.- +|..++++++|+.|.+++|.+. .+|. .++.
T Consensus        96 -rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpk-eig~  171 (264)
T KOG0617|consen   96 -RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPK-EIGD  171 (264)
T ss_pred             -cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcH-HHHH
Confidence             489999999999999999864 678888899999999999999986 8889999999999999999988 6664 4899


Q ss_pred             CCCCCEEEcccccCccccc
Q 037514          233 MCNLRRLDLAINGFSGEKE  251 (636)
Q Consensus       233 l~~L~~L~L~~n~~~~~~~  251 (636)
                      ++.|++|++.+|+++-..|
T Consensus       172 lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             HHHHHHHhcccceeeecCh
Confidence            9999999999999885444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=9.9e-17  Score=135.19  Aligned_cols=181  Identities=31%  Similarity=0.506  Sum_probs=128.9

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ..++.|.+++|+++. +|..++.+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++...+. .|+.++.|+.||+
T Consensus        33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhc
Confidence            456666666776643 3445667777777777777775 667777777777777777777765443 4777777777777


Q ss_pred             cCCcCCC-chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514          466 SYNHITG-EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF  544 (636)
Q Consensus       466 ~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~  544 (636)
                      ++|++.. ..|..+..+     ..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|++.+
T Consensus       110 tynnl~e~~lpgnff~m-----~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYM-----TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             cccccccccCCcchhHH-----HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            7777653 334444333     45588888888887 78888999999999999999988 7899999999999999999


Q ss_pred             ccccccccccccCCC---CCCEEECcCCcceeecCh
Q 037514          545 NVMSRIISENIGQLS---EPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       545 n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~  577 (636)
                      |+++-..|+ ++++.   +=+.+.+.+|++...|.+
T Consensus       183 nrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  183 NRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             ceeeecChh-hhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            999876554 44332   223455667776654444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=3.8e-12  Score=113.08  Aligned_cols=37  Identities=35%  Similarity=0.578  Sum_probs=4.7

Q ss_pred             CCCEEeCCCCCCCCCCCcccc-CCCCCCEEeCcCCCCCcc
Q 037514           79 KLKLLDLSESSFSGMLPPNIG-NLSNLQYLDLSYQNLKEY  117 (636)
Q Consensus        79 ~L~~L~Ls~~~i~~~~~~~l~-~l~~L~~L~Ls~n~l~~~  117 (636)
                      +++.|+|++|.|+.+  +.++ .+.+|+.|++++|.|+.+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l   57 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL   57 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc
Confidence            344444444444422  1233 244444444444444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=4.3e-12  Score=119.87  Aligned_cols=250  Identities=18%  Similarity=0.191  Sum_probs=125.5

Q ss_pred             cccCCCCCCEEEccCCcCccccCh---hhhcCCCCCCEEEccCCCCccEEecC-----------CCCCCCCCccEEEccC
Q 037514          280 NIGQLAELVALNLYRNSWKGIITE---NHFQNLTKLNSLYLSSSNKSLVFTMR-----------SDWIPPFSLRQMAIND  345 (636)
Q Consensus       280 ~l~~l~~L~~L~l~~n~~~~~i~~---~~~~~l~~L~~L~L~~n~~~~~~~~~-----------~~~~~~~~L~~L~l~~  345 (636)
                      .+..+..++.+++++|.+......   ..+.+.+.|+..++++-   +++...           +.+..+++|+++++++
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~---ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM---FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh---hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            344567899999999988754221   25667778888888764   222111           1223444666666666


Q ss_pred             CCCCcCCCh----hhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCc
Q 037514          346 CQLGSAFPS----WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN  421 (636)
Q Consensus       346 ~~~~~~~~~----~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  421 (636)
                      |-+....+.    .+.++..|++|.|.+|.+.......+...    |..|.         .......-+.|+.+...+|+
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~---------~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA---------VNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH---------HHhccCCCcceEEEEeeccc
Confidence            666544333    23455666666666665543322222211    11111         00112233455555555555


Q ss_pred             CCcc----cCCCCCCCCCCCEEECCCCCCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHh-hhcCCCCcccEE
Q 037514          422 LSGE----LSTSLPDCSRLTALDIGGNRFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNA-FSACNVSTLETL  492 (636)
Q Consensus       422 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~~L~~L  492 (636)
                      +...    +...|...+.|+++.++.|.|...    ....+..++.|+.|||.+|-++......+.. ++.  ++.|+.|
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s--~~~L~El  246 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS--WPHLREL  246 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc--cchheee
Confidence            4421    222344445566666666655421    1233455666666666666555333322221 222  2455666


Q ss_pred             EcccCcCCCCCchhh-----cCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccc
Q 037514          493 DLASNKLGGNLPDSL-----GNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVM  547 (636)
Q Consensus       493 ~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l  547 (636)
                      ++++|.+...-...|     ...++|+.|.+.+|.|+..    +..++...+.|+.|+|++|++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666666553322221     2345666666666665431    122334456666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.7e-11  Score=107.62  Aligned_cols=108  Identities=27%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             CCCCCCEEecCCccCCCCCChhhhhC-CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccc-cCCCC
Q 037514          133 DLSSSRYLHLEGMKLSKVTNWLQVVN-ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWL-FNIST  210 (636)
Q Consensus       133 ~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~  210 (636)
                      +..++++|+|++|.|+.+.    .++ .+.+|++|++++|.++...  .+..+++|++|++++|.|+. +.+.+ ..+++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie----~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE----NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc----chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            3334445555555554442    232 3455555566665555432  34556666666666666665 33333 24666


Q ss_pred             CCEEeCcCCcCCCCCCCCC-CCCCCCCCEEEcccccCcc
Q 037514          211 LVTLNLRSSQLSGSIPKFP-PGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       211 L~~L~L~~n~l~~~~p~~~-~~~l~~L~~L~L~~n~~~~  248 (636)
                      |++|++++|++. .+.++. +..+++|+.|++.+|++..
T Consensus        90 L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccc
Confidence            777777766665 333322 5667777777777777653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=2.1e-11  Score=115.29  Aligned_cols=184  Identities=24%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             CCccEEECccCcCCccCCc----ccCCCCCCcEEEccCCcCCcc-------------cCCCCCCCCCCCEEECCCCCCCC
Q 037514          386 QKLSVIDLSNNKFFGGILS----SLCSLPSLYWLRLGGNNLSGE-------------LSTSLPDCSRLTALDIGGNRFLQ  448 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~  448 (636)
                      +.|++++||+|.+....+.    .+.++..|++|+|.+|.+...             .......-+.|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4555566666555332222    223455666666666654311             11123344567777777776654


Q ss_pred             Cc----chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCc
Q 037514          449 LP----STSMGNLCNLHSLDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLS  519 (636)
Q Consensus       449 ~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls  519 (636)
                      ..    ...|...+.|+.+.++.|.+....... ...+..  ++.|+.|||.+|.++..    +...+..+++|+.|+++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~--~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH--CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh--CCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            33    233455566777777776664322211 112222  26666666666666622    23445566666666666


Q ss_pred             CCccCCccChhh-----hCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcc
Q 037514          520 ENSFLGSLPTSI-----GNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSW  571 (636)
Q Consensus       520 ~n~~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  571 (636)
                      +|.+...-..+|     ...+.|+++.+.+|.++..    +.......+.|..|+|++|++
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666544332222     2245666666666666542    122334456666666666665

>PLN03150 hypothetical protein; Provisional

Probab=99.09  E-value=4.2e-10  Score=122.63  Aligned_cols=145  Identities=22%  Similarity=0.241  Sum_probs=88.0

Q ss_pred             ccCHHhHHHHHhcc-CCCCCCCCCCCCCcccC--c---ccc-C--------CCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 037514           41 RCTEREREALLKFK-GLIDPSARLSSWKSPIP--E---FVY-S--------LKKLKLLDLSESSFSGMLPPNIGNLSNLQ  105 (636)
Q Consensus        41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~p--~---~~~-~--------l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~  105 (636)
                      .+...|..|+..+| .+..+..  .+|.+...  .   +-+ .        ...++.|+|++|.++|.+|..++++++|+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~  445 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQ  445 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCC
Confidence            45567889999999 7654321  36754321  1   100 0        11356667777777666666666666666


Q ss_pred             EEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCC
Q 037514          106 YLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT  185 (636)
Q Consensus       106 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  185 (636)
                      +|+|++|.+++.                                   ++..++.+++|++|+|++|++++.+|..+++++
T Consensus       446 ~L~Ls~N~l~g~-----------------------------------iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        446 SINLSGNSIRGN-----------------------------------IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEECCCCcccCc-----------------------------------CChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            666666665532                                   223556666666666666666666666666677


Q ss_pred             CCCEEEccCCcCCcCCCccccCC-CCCCEEeCcCCcCC
Q 037514          186 SLSILELSYDNFNSQIPQWLFNI-STLVTLNLRSSQLS  222 (636)
Q Consensus       186 ~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~~n~l~  222 (636)
                      +|++|+|++|.+++.+|..+... .++..+++.+|...
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            77777777777766666666542 35556666666543

>PLN03150 hypothetical protein; Provisional

Probab=99.08  E-value=3.1e-10  Score=123.66  Aligned_cols=107  Identities=30%  Similarity=0.487  Sum_probs=79.3

Q ss_pred             ccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514          489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG  568 (636)
Q Consensus       489 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  568 (636)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcceeecChhhhcCCCCCCeeeCCCCC
Q 037514          569 NSWEGVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       569 n~l~~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      |++.|.+|.........+..+++++|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            777777777543334456677777763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.1e-11  Score=120.36  Aligned_cols=164  Identities=24%  Similarity=0.259  Sum_probs=93.2

Q ss_pred             cCCCCCCEEeCCCCCCCCCCC--ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514           75 YSLKKLKLLDLSESSFSGMLP--PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN  152 (636)
Q Consensus        75 ~~l~~L~~L~Ls~~~i~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  152 (636)
                      ++++.|+...|.++... ..+  .....|++++.||||.|-+....+-..       ....+++|+.|+++.|++....+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHH-------HHHhcccchhcccccccccCCcc
Confidence            35667777777776654 222  245567777777777776665443211       14566777777777777655421


Q ss_pred             hhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC-C
Q 037514          153 WLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP-P  230 (636)
Q Consensus       153 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~  230 (636)
                       ...-..+++|++|.|+.|.++. .+......+++|+.|+|.+|.....-.....-+..|++|||++|++. ..+..+ .
T Consensus       190 -s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~  267 (505)
T KOG3207|consen  190 -SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKV  267 (505)
T ss_pred             -ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccc
Confidence             0111246677777777776652 11122345677777777777422222223345566777777777766 444333 5


Q ss_pred             CCCCCCCEEEcccccCcc
Q 037514          231 GKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       231 ~~l~~L~~L~L~~n~~~~  248 (636)
                      +.++.|+.|+++.+.+..
T Consensus       268 ~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             ccccchhhhhccccCcch
Confidence            666677777766666553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.6e-11  Score=116.13  Aligned_cols=208  Identities=23%  Similarity=0.168  Sum_probs=101.7

Q ss_pred             CCCCcceeccccccCCCcch-hhHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCC-CCCCC
Q 037514          358 TQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELST-SLPDC  433 (636)
Q Consensus       358 ~~~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l  433 (636)
                      ++++|+.+.+.++.+..... .....+  ++++.||++.|-+....  ......+|+|+.|+++.|++..-... .-..+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~--~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKIL--PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhC--CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34566666666666553332 122223  66777777776554321  12234466777777777665422111 11234


Q ss_pred             CCCCEEECCCCCCCCCc-chhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCC-chhhcCCC
Q 037514          434 SRLTALDIGGNRFLQLP-STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL-PDSLGNLL  511 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~  511 (636)
                      +.|+.|.++.|.++... ......+|+|+.|++.+|.....-.....     .+..|++|||++|++.... -...+.++
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----ILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----hhhHHhhccccCCccccccccccccccc
Confidence            56666666666665321 11234556666666666631111111111     1244566666666655221 12345566


Q ss_pred             CCCEEeCcCCccCCc-cChh-----hhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcce
Q 037514          512 CLEYLGLSENSFLGS-LPTS-----IGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       512 ~L~~L~Ls~n~~~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      .|..|+++.|.+... .|+.     ...+++|++|+++.|++.+.. -..+..+++|+.|.+..|.+.
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            666666666665431 2221     234456666666666653321 122334455555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=4.3e-12  Score=126.97  Aligned_cols=195  Identities=28%  Similarity=0.375  Sum_probs=128.8

Q ss_pred             CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCE
Q 037514          359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTA  438 (636)
Q Consensus       359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  438 (636)
                      +..-...|++.|++.. +|..+..+  ..|+.+.+..|.+ ..+|..++.+..|++++++.|++. .+|..+..+ -|+.
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~~~~f--~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEEACAF--VSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKV  147 (722)
T ss_pred             ccchhhhhcccccccc-CchHHHHH--HHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-ccee
Confidence            4445567777777763 44444444  5677777777766 345666777778888888888776 566666554 4777


Q ss_pred             EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeC
Q 037514          439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL  518 (636)
Q Consensus       439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  518 (636)
                      |-+++|+++..+++ ++...+|..||.+.|.+.. +|..+..+     .+|+.|.+..|++. .+|+.+.. -.|..||+
T Consensus       148 li~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~s-lpsql~~l-----~slr~l~vrRn~l~-~lp~El~~-LpLi~lDf  218 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQS-LPSQLGYL-----TSLRDLNVRRNHLE-DLPEELCS-LPLIRLDF  218 (722)
T ss_pred             EEEecCccccCCcc-cccchhHHHhhhhhhhhhh-chHHhhhH-----HHHHHHHHhhhhhh-hCCHHHhC-Cceeeeec
Confidence            77888877766553 5677777788888877763 33333333     44577777777777 56666663 34777888


Q ss_pred             cCCccCCccChhhhCCCCCCeEeCcCccccccccccc---cCCCCCCEEECcCCc
Q 037514          519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI---GQLSEPYMLDLYGNS  570 (636)
Q Consensus       519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~  570 (636)
                      |.|++. .+|-+|.++++|++|-|.+|.+.. .|..+   +.+.-.++|+...|+
T Consensus       219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            888777 677778888888888888777765 33322   344555667776663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=3.4e-10  Score=117.90  Aligned_cols=178  Identities=38%  Similarity=0.480  Sum_probs=106.1

Q ss_pred             CCccEEECccCcCCccCCcccCCCC-CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEe
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLP-SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD  464 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  464 (636)
                      +.++.|++.+|.++... .....+. +|+.|++++|++. .+|..+..++.|+.|++++|++...++. .+..+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhhee
Confidence            34666666666664432 2333342 6667777777665 4444566667777777777777665542 23566677777


Q ss_pred             CcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514          465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF  544 (636)
Q Consensus       465 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~  544 (636)
                      +++|++.. +|.....     ...|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++.++.|++++
T Consensus       193 ls~N~i~~-l~~~~~~-----~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         193 LSGNKISD-LPPEIEL-----LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             ccCCcccc-Cchhhhh-----hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence            77777663 2322211     133567777777543 44555666667777777777665 3355566666777777777


Q ss_pred             ccccccccccccCCCCCCEEECcCCcceeecC
Q 037514          545 NVMSRIISENIGQLSEPYMLDLYGNSWEGVIT  576 (636)
Q Consensus       545 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  576 (636)
                      |.++....  +..+.+++.|++++|.+....|
T Consensus       265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         265 NQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccccc--ccccCccCEEeccCccccccch
Confidence            77766543  6666777777777776654433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=5.1e-10  Score=116.60  Aligned_cols=193  Identities=36%  Similarity=0.500  Sum_probs=154.5

Q ss_pred             EEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCC-CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514          390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS-RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN  468 (636)
Q Consensus       390 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  468 (636)
                      .+++..+.+.... ..+..++.++.|++.+|+++ .++....... +|++|++++|.+..++ ..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence            4666666663322 23445588999999999998 5666666664 9999999999999875 24789999999999999


Q ss_pred             cCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccc
Q 037514          469 HITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS  548 (636)
Q Consensus       469 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  548 (636)
                      +++...+. ..     ..+.|+.|++++|++. .+|........|++|.+++|++. ..+..+.++..+..+.+.+|++.
T Consensus       174 ~l~~l~~~-~~-----~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         174 DLSDLPKL-LS-----NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             hhhhhhhh-hh-----hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence            99844433 21     2377899999999999 67776666778999999999654 56677899999999999999987


Q ss_pred             ccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          549 RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                      .. +..+..++.++.|++++|.++ .++.  +..+.+++.|++++|...
T Consensus       246 ~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         246 DL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence            63 577888999999999999998 4655  778999999999998664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=2.1e-11  Score=112.56  Aligned_cols=134  Identities=25%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCc
Q 037514          100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL  179 (636)
Q Consensus       100 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  179 (636)
                      ....|+.+|||+|.|+.++.+          ++-.+.+|.|++++|.+..+    +.+..+++|+.|||++|.++... .
T Consensus       282 TWq~LtelDLS~N~I~~iDES----------vKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~-G  346 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES----------VKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECV-G  346 (490)
T ss_pred             hHhhhhhccccccchhhhhhh----------hhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhh-h
Confidence            346688999999999887654          77788999999999999887    35788899999999999876432 2


Q ss_pred             CccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC-CCCCCCCCEEEcccccCccccc
Q 037514          180 PFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP-PGKMCNLRRLDLAINGFSGEKE  251 (636)
Q Consensus       180 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~l~~L~~L~L~~n~~~~~~~  251 (636)
                      .-.++-+++.|.|++|.+..  ..++.++.+|..||+++|++. .+.... ++++|.|+++.|.+|.+.+...
T Consensus       347 wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  347 WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccch
Confidence            33467788999999998876  456788899999999999987 433333 8999999999999999886543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=6.6e-11  Score=109.30  Aligned_cols=129  Identities=28%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             CCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCC
Q 037514          433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLC  512 (636)
Q Consensus       433 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  512 (636)
                      .+.|+++|+++|.|+.+.. ...-.|+++.|++++|.++.     ++++..+  ++|+.||||+|.++ .+.++=..+-+
T Consensus       283 Wq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~-----v~nLa~L--~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRT-----VQNLAEL--PQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccchhhhhh-hhhhccceeEEeccccceee-----ehhhhhc--ccceEeecccchhH-hhhhhHhhhcC
Confidence            3455566666665554432 34445555555555555541     1112211  44555555555554 22223334445


Q ss_pred             CCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcce
Q 037514          513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      .+.|.|++|.+..  -..+..+-+|..||+++|+|.... -..++++|-|+.+.|.+|++.
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5555555554431  122444445555555555554331 123445555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=1.6e-11  Score=123.03  Aligned_cols=195  Identities=26%  Similarity=0.367  Sum_probs=155.4

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      .--...|++.|++. ++|..++.+-.|+.+.+..|.+. .+|..+.++..|+++|++.|++...+.. ++.++ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEE
Confidence            44567888899884 56777777888999999999887 7888899999999999999999887764 55555 899999


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      ++|+++ .+|+.++.     .+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..+ .|..||++.|
T Consensus       151 sNNkl~-~lp~~ig~-----~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScN  221 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGL-----LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCN  221 (722)
T ss_pred             ecCccc-cCCccccc-----chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccC
Confidence            999987 45555542     266789999999998 77888999999999999999988 667777744 6889999999


Q ss_pred             cccccccccccCCCCCCEEECcCCcceeecChhhh--cCCCCCCeeeCCCCC
Q 037514          546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF--RNLSGLDYLTISSSN  595 (636)
Q Consensus       546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~ls~n~  595 (636)
                      +++. +|-.|..+..|++|-|.+|++. +-|..+-  +...-.++|++.-|+
T Consensus       222 kis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  222 KISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            9977 6788999999999999999997 5666421  233455788888774

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=9.6e-11  Score=122.10  Aligned_cols=127  Identities=24%  Similarity=0.323  Sum_probs=56.8

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      ..++.+++..|.+.. +-..+..+++|..|++.+|.|..+...          +..+++|++|++++|.|+.+.    .+
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~----~l  136 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE----GL  136 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc----ch
Confidence            344444444444442 222344445555555555555443321          334455555555555555442    23


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEeCcCCcCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIP-QWLFNISTLVTLNLRSSQLS  222 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~  222 (636)
                      ..++.|+.|++++|.+....  .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       137 ~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  137 STLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhccchhhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            34444555555555544321  22334555555555555544222 1 344455555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.6e-09  Score=120.62  Aligned_cols=131  Identities=22%  Similarity=0.227  Sum_probs=92.7

Q ss_pred             CCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCcc--CCCCCChhhhhCCCCCCCEEEccCCcCCCCC
Q 037514          100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMK--LSKVTNWLQVVNELPSLVELHLSNCQLNFPQ  177 (636)
Q Consensus       100 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  177 (636)
                      .....+...+-+|.+..+..           -..+++|++|-+.+|.  +...+.  +.|..++.|++|||++|.-.+..
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~-----------~~~~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAG-----------SSENPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             chhheeEEEEeccchhhccC-----------CCCCCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcC
Confidence            33556777777776655433           3345578888888775  444432  45778888888888888766778


Q ss_pred             CcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEccccc
Q 037514          178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING  245 (636)
Q Consensus       178 ~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~  245 (636)
                      |..++++-+||+|+++++.+.. +|.++.+++.|.+|++..+.-...+|. ....+++||+|.+....
T Consensus       588 P~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            8888888888888888888875 788888888888888887765433332 24557888888876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.7e-09  Score=77.83  Aligned_cols=56  Identities=36%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             CEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          514 EYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       514 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      ++|++++|++....++.|.++++|++|++++|+++.+.+..|.++++|++|++++|
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            33333333333222233333333333333333333333333333333333333333

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=6.8e-09  Score=115.68  Aligned_cols=128  Identities=24%  Similarity=0.276  Sum_probs=85.9

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCC--CCcccccccccccccccCCCCCCCCEEecCCcc-CCCCCChh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQN--LKEYQITKELWVSDLIWLPDLSSSRYLHLEGMK-LSKVTNWL  154 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  154 (636)
                      ..+++..+.+|.+. .++.+. ..++|++|-+..|.  +..++.+         +|..++.|++|||++|. +..+   |
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~---------ff~~m~~LrVLDLs~~~~l~~L---P  588 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGE---------FFRSLPLLRVLDLSGNSSLSKL---P  588 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHH---------HHhhCcceEEEECCCCCccCcC---C
Confidence            56677777777765 333322 33467777777764  3333322         26678888888888753 3443   4


Q ss_pred             hhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc
Q 037514          155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ  220 (636)
Q Consensus       155 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  220 (636)
                      ..++.+.+||+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus       589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            57788888888888888876 467778888888888888776555556666678888888876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=3.7e-09  Score=77.13  Aligned_cols=61  Identities=46%  Similarity=0.561  Sum_probs=53.1

Q ss_pred             CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccc
Q 037514          487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVM  547 (636)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l  547 (636)
                      |+|++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678999999998866667889999999999999999888888899999999999999875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.4e-09  Score=113.40  Aligned_cols=221  Identities=28%  Similarity=0.251  Sum_probs=118.0

Q ss_pred             hcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCC
Q 037514          356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR  435 (636)
Q Consensus       356 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  435 (636)
                      +..+.++..+++.+|++...... +..+  ++|++|++++|.|+...  .+..++.|+.|++++|.+...  ..+..++.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~--~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~  163 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-LSSL--VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKS  163 (414)
T ss_pred             cccccceeeeeccccchhhcccc-hhhh--hcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchh
Confidence            34455566666666666544331 2222  66777777777765442  344556677777777776522  33445677


Q ss_pred             CCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCC--C
Q 037514          436 LTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLL--C  512 (636)
Q Consensus       436 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--~  512 (636)
                      |+.+++++|++..+.. . ...+.+++.+.+.+|.+...-..  ...     ..+..+++..|.++..-+  +..+.  +
T Consensus       164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~~-----~~l~~~~l~~n~i~~~~~--l~~~~~~~  233 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DLL-----KKLVLLSLLDNKISKLEG--LNELVMLH  233 (414)
T ss_pred             hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HHH-----HHHHHhhcccccceeccC--cccchhHH
Confidence            7777777777766554 2 35666777777777766422111  111     222344566666552211  22222  2


Q ss_pred             CCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceee---cChhhhcCCCCCCee
Q 037514          513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGV---ITEKHFRNLSGLDYL  589 (636)
Q Consensus       513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L  589 (636)
                      |+.+++++|++. ..+..+..+..++.+++.+|++...  ..+...+.+..+....|++...   ...........++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            666777777665 3334555666667777776666544  3344445555555555554311   111113344555556


Q ss_pred             eCCCCCC
Q 037514          590 TISSSNS  596 (636)
Q Consensus       590 ~ls~n~~  596 (636)
                      .+.+|..
T Consensus       311 ~~~~~~~  317 (414)
T KOG0531|consen  311 TLELNPI  317 (414)
T ss_pred             ccccCcc
Confidence            6665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.66  E-value=2.6e-10  Score=117.39  Aligned_cols=159  Identities=25%  Similarity=0.302  Sum_probs=118.5

Q ss_pred             CccccCCCCCCEEeCCCCCCCCCCCccccCC---------------------------------CCCCEEeCcCCCCCcc
Q 037514           71 PEFVYSLKKLKLLDLSESSFSGMLPPNIGNL---------------------------------SNLQYLDLSYQNLKEY  117 (636)
Q Consensus        71 p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l---------------------------------~~L~~L~Ls~n~l~~~  117 (636)
                      |-.+..|+.|++|.|.++.+...  ..+..+                                 ..|.+.+.++|.++..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence            66778999999999999988531  111111                                 2244455566655554


Q ss_pred             cccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcC
Q 037514          118 QITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNF  197 (636)
Q Consensus       118 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  197 (636)
                      +..          +.-++.|+.|+|++|+++..    +.+..+++|++|||++|.+..+.......++ |+.|.+++|.+
T Consensus       180 D~S----------Lqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  180 DES----------LQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             HHH----------HHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence            432          66778899999999999987    4788899999999999998876555555565 99999999988


Q ss_pred             CcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcc
Q 037514          198 NSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       198 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~  248 (636)
                      +.  ..++.++.+|+.||+++|-+.+.-.-.|+..+..|+.|+|.+|.+-.
T Consensus       245 ~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  245 TT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             Hh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            76  34578999999999999988754332347778889999999998654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=6.6e-09  Score=96.32  Aligned_cols=157  Identities=21%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             CCccEEECccCcCCcc-CCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC-CCCCc-chhhcCCCCCCe
Q 037514          386 QKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR-FLQLP-STSMGNLCNLHS  462 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~  462 (636)
                      ..++++|+++..++.. ....+..+.+|+.|.+.|+++...+...+....+|+.|+++.+. ++... .-.+..|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4566677766665422 12234456666666677766665555556666666667666653 22211 122456666666


Q ss_pred             EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC---CCCchhhcCCCCCCEEeCcCCcc-CCccChhhhCCCCCC
Q 037514          463 LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG---GNLPDSLGNLLCLEYLGLSENSF-LGSLPTSIGNLSHLR  538 (636)
Q Consensus       463 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~~l~~L~  538 (636)
                      |+++-|.++.......-.   .--++|+.|+++|+.-.   ..+..-...+++|..||||+|.. ....-..|..++.|+
T Consensus       265 LNlsWc~l~~~~Vtv~V~---hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVA---HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             cCchHhhccchhhhHHHh---hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            666666654332211111   01145566666655322   11112234555666666665532 111112334444555


Q ss_pred             eEeCcCc
Q 037514          539 ALYLSFN  545 (636)
Q Consensus       539 ~L~Ls~n  545 (636)
                      +|.++.|
T Consensus       342 ~lSlsRC  348 (419)
T KOG2120|consen  342 HLSLSRC  348 (419)
T ss_pred             eeehhhh
Confidence            5555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=5.5e-09  Score=96.81  Aligned_cols=84  Identities=21%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC----CCCCCCC
Q 037514          162 SLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP----PGKMCNL  236 (636)
Q Consensus       162 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~~l~~L  236 (636)
                      +||+|||++..++. .....++.+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.-.   .+..    +..++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~---t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF---TENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc---chhHHHHHHHhhhhH
Confidence            57777877776653 22234566778888888888887777777777788888888776421   1122    6677888


Q ss_pred             CEEEcccccCcc
Q 037514          237 RRLDLAINGFSG  248 (636)
Q Consensus       237 ~~L~L~~n~~~~  248 (636)
                      ..|+++++.+..
T Consensus       263 ~~LNlsWc~l~~  274 (419)
T KOG2120|consen  263 DELNLSWCFLFT  274 (419)
T ss_pred             hhcCchHhhccc
Confidence            888888877654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.5e-07  Score=87.49  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=56.8

Q ss_pred             CCCCCCEEeCcCCccCCc-cChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEECcCCcceeecChh-----hhc
Q 037514          509 NLLCLEYLGLSENSFLGS-LPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWEGVITEK-----HFR  581 (636)
Q Consensus       509 ~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~  581 (636)
                      -++++..+-+..|++... ....+..++.+..|+|+.|+|..-. -..+..+++|..|.++++++...+.-+     ..+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            356778888888877532 3345666778888889888886532 245778888999999998876543221     245


Q ss_pred             CCCCCCeeeCC
Q 037514          582 NLSGLDYLTIS  592 (636)
Q Consensus       582 ~l~~L~~L~ls  592 (636)
                      ++++++.|+=+
T Consensus       277 RL~~v~vLNGs  287 (418)
T KOG2982|consen  277 RLTKVQVLNGS  287 (418)
T ss_pred             eccceEEecCc
Confidence            66777777544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.8e-07  Score=86.90  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=60.5

Q ss_pred             CCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcC-CCccccCCCCC
Q 037514          133 DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-IPQWLFNISTL  211 (636)
Q Consensus       133 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L  211 (636)
                      .++.++++||.+|.|+.-..+...+.++|+|++|+|+.|++...+...-..+.+|++|-|.+..+.-. ....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45667788888888876544555677888888888888887654432224567888888887766432 23345567777


Q ss_pred             CEEeCcCCcC
Q 037514          212 VTLNLRSSQL  221 (636)
Q Consensus       212 ~~L~L~~n~l  221 (636)
                      ++|+++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7887777743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.26  E-value=5.8e-08  Score=100.57  Aligned_cols=194  Identities=27%  Similarity=0.288  Sum_probs=88.0

Q ss_pred             CCccEEECccCcCCccC-CcccCCCCCCcEEEccCCcCCcccCCCCCCC-CCCCEEECCCCCCCC---Ccchh---hcC-
Q 037514          386 QKLSVIDLSNNKFFGGI-LSSLCSLPSLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQ---LPSTS---MGN-  456 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~---~~~~~---~~~-  456 (636)
                      ++++.|.+-.-.-.+.. |-.+..+.+|+.|-+.++.+...  ..+..+ ..|+.|-.. |.+..   +...-   +.+ 
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence            44555555443322222 55666788899999998877521  111100 112222111 11100   00000   000 


Q ss_pred             --CCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccCh-hhhC
Q 037514          457 --LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT-SIGN  533 (636)
Q Consensus       457 --l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~l~~  533 (636)
                        --+|.+.+.++|.+. .+...+.-+     +.|+.|+|++|+++..  +.+..|++|++|||+.|.+. .+|. ...+
T Consensus       161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll-----~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g  231 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLV-LMDESLQLL-----PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG  231 (1096)
T ss_pred             hhhhhHhhhhcchhhHH-hHHHHHHHH-----HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh
Confidence              013444555555543 222222221     3446666666665522  24555666666666666554 2332 1222


Q ss_pred             CCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          534 LSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       534 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      +. |+.|.+++|.++..  ..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|++.||
T Consensus       232 c~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  232 CK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            22 66666666655543  344555666666666664443222222344555566666666

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=5.9e-07  Score=82.53  Aligned_cols=237  Identities=19%  Similarity=0.176  Sum_probs=112.9

Q ss_pred             CCCcceeccccccCCCcchhhHHhhcC--CCccEEECccCcC---Ccc-------CCcccCCCCCCcEEEccCCcCCccc
Q 037514          359 QASVFKLTLSNAAISDTIPDWFWGVIS--QKLSVIDLSNNKF---FGG-------ILSSLCSLPSLYWLRLGGNNLSGEL  426 (636)
Q Consensus       359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~--~~L~~L~ls~n~l---~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~  426 (636)
                      +..++.+++++|.|......+++....  .+|+..+++.--.   .+.       ....+.+||.|+.++|++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455555555555555444444333221  3444444443211   111       1123445666666666666665433


Q ss_pred             CC----CCCCCCCCCEEECCCCCCCCCcchhh-------------cCCCCCCeEeCcCCcCCCchhhhHHh-hhcCCCCc
Q 037514          427 ST----SLPDCSRLTALDIGGNRFLQLPSTSM-------------GNLCNLHSLDISYNHITGEIKELTNA-FSACNVST  488 (636)
Q Consensus       427 ~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~~  488 (636)
                      |.    .+++-+.|++|.+++|.+.-+..+.+             ..-|.|++.....|++.......... +.+.  ..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh--~~  186 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH--EN  186 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh--cC
Confidence            32    23445566666666665543222111             13356666666666665322222111 1111  45


Q ss_pred             ccEEEcccCcCCCCC-----chhhcCCCCCCEEeCcCCccCCccCh----hhhCCCCCCeEeCcCcccccccccc----c
Q 037514          489 LETLDLASNKLGGNL-----PDSLGNLLCLEYLGLSENSFLGSLPT----SIGNLSHLRALYLSFNVMSRIISEN----I  555 (636)
Q Consensus       489 L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~~~~----~  555 (636)
                      |+++.+..|.|...-     -..+..+.+|+.|||.+|-++-.-..    .+..-+.|+.|.+..|.++..-...    |
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            566666666665221     11234566677777777765432221    2233344666666666655432211    1


Q ss_pred             --cCCCCCCEEECcCCcceee------cChhhhcCCCCCCeeeCCCCCCC
Q 037514          556 --GQLSEPYMLDLYGNSWEGV------ITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       556 --~~l~~L~~L~L~~n~l~~~------~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                        ...+.|..|...+|...+.      .++-.-..++-|..|.+.||.+.
T Consensus       267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence              1345666666666643322      12212234566666667777554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=8.3e-07  Score=73.01  Aligned_cols=112  Identities=25%  Similarity=0.336  Sum_probs=64.2

Q ss_pred             CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc-CCCCCCEEeCcCCccCCccChhhhCCCCCC
Q 037514          460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG-NLLCLEYLGLSENSFLGSLPTSIGNLSHLR  538 (636)
Q Consensus       460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  538 (636)
                      +..++++.|++. .+++....+...  ..|+..+|++|.+. .+|..|. ..+.++.|++++|.++ .+|+.+..++.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~--~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKG--YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCC--ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            445566666553 344444444433  44555666666666 3444443 3346666666666666 5566666666667


Q ss_pred             eEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514          539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       539 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  578 (636)
                      .|+++.|.+... |+.+..+.++-.|+..+|.+. .+|.+
T Consensus       104 ~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  104 SLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hcccccCccccc-hHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            677766666553 344444666666666666655 45554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=4.2e-06  Score=55.68  Aligned_cols=40  Identities=40%  Similarity=0.649  Sum_probs=25.4

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCccc
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQ  118 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  118 (636)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35677777777776 34555777777777777777766543

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=4.3e-07  Score=74.63  Aligned_cols=84  Identities=25%  Similarity=0.371  Sum_probs=42.5

Q ss_pred             CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCC
Q 037514          434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCL  513 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  513 (636)
                      ..|+..++++|.+...++..-..++..+.+++++|.+. .+|..+..+     +.|+.|+++.|.+. ..|..+..+.++
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam-----~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM-----PALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhh-----HHhhhcccccCccc-cchHHHHHHHhH
Confidence            34444555555555555544444445555555555554 333333332     33455555555555 444444445555


Q ss_pred             CEEeCcCCccC
Q 037514          514 EYLGLSENSFL  524 (636)
Q Consensus       514 ~~L~Ls~n~~~  524 (636)
                      ..|+..+|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            55555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=1.1e-06  Score=80.82  Aligned_cols=110  Identities=17%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             CCcceeccccccCCCcchhh----HHhhcCCCccEEECccCcCCccCC-----cccCCCCCCcEEEccCCcCCcc----c
Q 037514          360 ASVFKLTLSNAAISDTIPDW----FWGVISQKLSVIDLSNNKFFGGIL-----SSLCSLPSLYWLRLGGNNLSGE----L  426 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~  426 (636)
                      +.|+......|++.......    +...  ..|+++.+..|.|...-.     ..+..+.+|+.||+.+|.++..    +
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh--~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESH--ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhh--cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            45666666666554322111    1111  355555555555532210     1112244555555555554411    1


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCcchhh------cCCCCCCeEeCcCCcCC
Q 037514          427 STSLPDCSRLTALDIGGNRFLQLPSTSM------GNLCNLHSLDISYNHIT  471 (636)
Q Consensus       427 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~  471 (636)
                      ...+...+.|++|.+.+|-++......+      ...++|..|...+|.+.
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            1223333445555555554443222111      12345555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1.2e-05  Score=71.08  Aligned_cols=87  Identities=21%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEeCcCCcCCCCCCC---CCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-IPQWLFNISTLVTLNLRSSQLSGSIPK---FPPGK  232 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~  232 (636)
                      |..+++|.+|.+++|+|+.+.|.--.-+++|..|.|.+|.+... --.-+..+++|++|.+-+|+.+. -..   ..+.+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEe
Confidence            33344444444444444443333333334444444444444320 01124455666666666665552 111   11566


Q ss_pred             CCCCCEEEcccc
Q 037514          233 MCNLRRLDLAIN  244 (636)
Q Consensus       233 l~~L~~L~L~~n  244 (636)
                      +++|+.||.+.-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            677777776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=2e-05  Score=69.63  Aligned_cols=104  Identities=21%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCc
Q 037514          103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPF  181 (636)
Q Consensus       103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~  181 (636)
                      +...+||++|.+..++.           |..++.|.+|.+++|+|+.+..  ..-..+++|++|.|.+|.+..... ..+
T Consensus        43 ~~d~iDLtdNdl~~l~~-----------lp~l~rL~tLll~nNrIt~I~p--~L~~~~p~l~~L~LtnNsi~~l~dl~pL  109 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN-----------LPHLPRLHTLLLNNNRITRIDP--DLDTFLPNLKTLILTNNSIQELGDLDPL  109 (233)
T ss_pred             ccceecccccchhhccc-----------CCCccccceEEecCCcceeecc--chhhhccccceEEecCcchhhhhhcchh
Confidence            45556666666655443           5666666666666666666632  122335566666666666543211 234


Q ss_pred             cCCCCCCEEEccCCcCCcCC---CccccCCCCCCEEeCcCC
Q 037514          182 LNFTSLSILELSYDNFNSQI---PQWLFNISTLVTLNLRSS  219 (636)
Q Consensus       182 ~~l~~L~~L~L~~n~~~~~~---p~~l~~l~~L~~L~L~~n  219 (636)
                      ..+++|++|.+-+|.++..-   --.+..+++|++||..+-
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            55667777777666665411   113456777777777644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.2e-05  Score=53.50  Aligned_cols=35  Identities=46%  Similarity=0.593  Sum_probs=13.2

Q ss_pred             CCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccc
Q 037514          513 LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS  548 (636)
Q Consensus       513 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  548 (636)
                      |++|++++|+|. .+|..++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444443 23333344444444444444433

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.90  E-value=1.2e-06  Score=85.61  Aligned_cols=285  Identities=19%  Similarity=0.106  Sum_probs=136.2

Q ss_pred             CCCEEeCcCCcCCCCCCCC-CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCC
Q 037514          210 TLVTLNLRSSQLSGSIPKF-PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELV  288 (636)
Q Consensus       210 ~L~~L~L~~n~l~~~~p~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~  288 (636)
                      .|+.|.+++++-.+.-+-- ...+++++++|.+.++..  .....+..+.                       ..+.+|+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~--iTd~s~~sla-----------------------~~C~~l~  193 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK--ITDSSLLSLA-----------------------RYCRKLR  193 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhccee--ccHHHHHHHH-----------------------Hhcchhh
Confidence            4666777766533221100 045667777776666541  1111111111                       2456777


Q ss_pred             EEEccCC-cCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcC--CChhhcCCCCccee
Q 037514          289 ALNLYRN-SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA--FPSWLKTQASVFKL  365 (636)
Q Consensus       289 ~L~l~~n-~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L  365 (636)
                      ++++..| .++...-...-..+++|+++++++|+......+.....+...++.+...+|.-.+.  +...-..+..+.++
T Consensus       194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l  273 (483)
T KOG4341|consen  194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL  273 (483)
T ss_pred             hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence            7777774 33332222233467888888888874221112222223344455555555542211  11112334445566


Q ss_pred             cccccc-CCCcchhhHHhhcCCCccEEECccCcCCc-cC-CcccCCCCCCcEEEccCCcC-CcccCC-CCCCCCCCCEEE
Q 037514          366 TLSNAA-ISDTIPDWFWGVISQKLSVIDLSNNKFFG-GI-LSSLCSLPSLYWLRLGGNNL-SGELST-SLPDCSRLTALD  440 (636)
Q Consensus       366 ~L~~n~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~  440 (636)
                      ++.+|. +++..-..+.... ..|+.++.+++.-.+ .. ..--.+..+|+.+-+++++- +..-.. .-.+++.|+.++
T Consensus       274 nl~~c~~lTD~~~~~i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  274 NLQHCNQLTDEDLWLIACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             chhhhccccchHHHHHhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence            655553 3322211111111 567777777764322 11 11223456777777777752 211111 123566777777


Q ss_pred             CCCCCCCCC--cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhh--cCCCCcccEEEcccCcCC-CCCchhhcCCCCCCE
Q 037514          441 IGGNRFLQL--PSTSMGNLCNLHSLDISYNHITGEIKELTNAFS--ACNVSTLETLDLASNKLG-GNLPDSLGNLLCLEY  515 (636)
Q Consensus       441 L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~  515 (636)
                      +..+.....  ....-.+++.|+.+.+++|..-..  +.+..+.  .+....|..+.+++++.. ...-+.+..+++|+.
T Consensus       353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD--~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITD--EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             ccccceehhhhHhhhccCCchhccCChhhhhhhhh--hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            777654321  122224567777777776653211  1111111  133455666666666544 223344566666666


Q ss_pred             EeCcCCc
Q 037514          516 LGLSENS  522 (636)
Q Consensus       516 L~Ls~n~  522 (636)
                      +++-+++
T Consensus       431 i~l~~~q  437 (483)
T KOG4341|consen  431 IELIDCQ  437 (483)
T ss_pred             eeeechh
Confidence            6666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=5.3e-06  Score=90.52  Aligned_cols=214  Identities=19%  Similarity=0.211  Sum_probs=132.7

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccc-------cCCCCCCCCEEecCCccCCCC
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI-------WLPDLSSSRYLHLEGMKLSKV  150 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~  150 (636)
                      -+++..++.+.......-..+.... |+.|.+.+-....-..... +..++.       .-..-.+|++|+++|...-. 
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~-~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s-  136 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDD-ATIDIISLLKDLLNEESRQNLQHLDISGSELFS-  136 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhh-hhccHHHHHHHHHhHHHHHhhhhcCccccchhh-
Confidence            3677777777665433323333333 7777776433222111000 000000       01123579999999865442 


Q ss_pred             CChhhhhCC-CCCCCEEEccCCcCCCCC-CcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCC
Q 037514          151 TNWLQVVNE-LPSLVELHLSNCQLNFPQ-SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF  228 (636)
Q Consensus       151 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  228 (636)
                      ..|+..++. +|+|+.|.+.+=.+.... .....++++|..||+|+++++..  .+++++++|++|.+++=.+.. ..++
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~-~~~l  213 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES-YQDL  213 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc-hhhH
Confidence            347666654 899999999987664322 23356889999999999999873  788999999999998776662 1211


Q ss_pred             -CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514          229 -PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ  307 (636)
Q Consensus       229 -~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~  307 (636)
                       .+.++++|++||+|........ ..+.                    ..-+.-..+++|+.||.+++.+.+.+-+..+.
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~-~ii~--------------------qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDT-KIIE--------------------QYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HHHhcccCCCeeeccccccccch-HHHH--------------------HHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence             2778999999999987654322 1000                    01112234679999999998888766665566


Q ss_pred             CCCCCCEEEcc
Q 037514          308 NLTKLNSLYLS  318 (636)
Q Consensus       308 ~l~~L~~L~L~  318 (636)
                      .-++|+.+..-
T Consensus       273 sH~~L~~i~~~  283 (699)
T KOG3665|consen  273 SHPNLQQIAAL  283 (699)
T ss_pred             hCccHhhhhhh
Confidence            66777766544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.73  E-value=3.4e-06  Score=82.43  Aligned_cols=235  Identities=19%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             cCCCCcceeccccc-cCCCcchhhHHhhcCCCccEEECccCc-CCcc-CCcccCCCCCCcEEEccCCcCCcc--cCCCCC
Q 037514          357 KTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNK-FFGG-ILSSLCSLPSLYWLRLGGNNLSGE--LSTSLP  431 (636)
Q Consensus       357 ~~~~~L~~L~L~~n-~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~  431 (636)
                      ..+++++++++..| .++...-..+...+ ++|++++++-+. +++. +-..+.+++.++.+.+.||.-.+.  +-..-.
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~  265 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA  265 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence            34555555555553 33333322222222 556666665552 2221 111223344455555554421110  001112


Q ss_pred             CCCCCCEEECCCCCC-CCCcch-hhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc-CCCCCchhh-
Q 037514          432 DCSRLTALDIGGNRF-LQLPST-SMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK-LGGNLPDSL-  507 (636)
Q Consensus       432 ~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l-  507 (636)
                      ++..+..+++..|.. +..... .-..+..|+.|+.+++.--  ....+..+.. ...+|+.|-+++|+ ++..-...+ 
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~--~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~  342 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI--TDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLG  342 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC--chHHHHHHhc-CCCceEEEeccccchhhhhhhhhhh
Confidence            334445555545432 221110 1124556666666665421  1112222222 23666777666665 221111122 


Q ss_pred             cCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeEeCcCccc-cccc----cccccCCCCCCEEECcCCcceeecChhhh
Q 037514          508 GNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRALYLSFNVM-SRII----SENIGQLSEPYMLDLYGNSWEGVITEKHF  580 (636)
Q Consensus       508 ~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  580 (636)
                      .+++.|+.+++.++....  .+-..-.+++.|+++.+++|.. ++.-    ...-.....|+.+.+++++....-..+..
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence            355667777777664321  1222224566777777776643 2210    11223456677777777765433333445


Q ss_pred             cCCCCCCeeeCCCCC
Q 037514          581 RNLSGLDYLTISSSN  595 (636)
Q Consensus       581 ~~l~~L~~L~ls~n~  595 (636)
                      ..++.|+.+++-+++
T Consensus       423 ~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  423 SICRNLERIELIDCQ  437 (483)
T ss_pred             hhCcccceeeeechh
Confidence            566777777776664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=3e-05  Score=84.72  Aligned_cols=139  Identities=19%  Similarity=0.282  Sum_probs=85.6

Q ss_pred             CCcceeccccccC-CCcchhhHHhhcCCCccEEECccCcCCc-cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514          360 ASVFKLTLSNAAI-SDTIPDWFWGVISQKLSVIDLSNNKFFG-GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT  437 (636)
Q Consensus       360 ~~L~~L~L~~n~~-~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  437 (636)
                      .+|++|++++... ....|..++.++ |+|+.|.+++-.+.. .......++|+|..||+++.+++..  .+++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~L-PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTML-PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhC-cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            4677777776533 233444455444 788888888766532 2334455678888888888887633  5677888888


Q ss_pred             EEECCCCCCCC-CcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhh--cCCCCcccEEEcccCcCCCC
Q 037514          438 ALDIGGNRFLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS--ACNVSTLETLDLASNKLGGN  502 (636)
Q Consensus       438 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~  502 (636)
                      +|.+.+-.+.. ..-..+..+++|+.||+|........ .......  ...+|.|+.||.|++.+.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHH
Confidence            88888777764 22234667888888888876654332 2221111  11246666666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00021  Score=71.89  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             cCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCC
Q 037514          406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN  485 (636)
Q Consensus       406 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  485 (636)
                      +..+.+++.|++++|.++ .+|. +  .++|++|.+++|.-....|+.+  .++|+.|++++|.....+|          
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----------
Confidence            334688999999999876 4452 2  2479999998865444444433  3579999999884222222          


Q ss_pred             CCcccEEEcccCcCC--CCCchhhcCCCCCCEEeCcCCccC--CccChhhhCCCCCCeEeCcCccccccccccccCCCCC
Q 037514          486 VSTLETLDLASNKLG--GNLPDSLGNLLCLEYLGLSENSFL--GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP  561 (636)
Q Consensus       486 ~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~~~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  561 (636)
                       ++|+.|+++++...  +.+|.      +|+.|.+.+++..  ..+|..+  .++|++|++++|.... .|..+.  .+|
T Consensus       112 -~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~LP--~SL  179 (426)
T PRK15386        112 -ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKLP--ESL  179 (426)
T ss_pred             -cccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCccc-Cccccc--ccC
Confidence             45688888766543  12332      4667776543311  1112111  1578888888877553 233333  577


Q ss_pred             CEEECcCC
Q 037514          562 YMLDLYGN  569 (636)
Q Consensus       562 ~~L~L~~n  569 (636)
                      +.|+++.|
T Consensus       180 k~L~ls~n  187 (426)
T PRK15386        180 QSITLHIE  187 (426)
T ss_pred             cEEEeccc
Confidence            88887766

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.0002  Score=72.07  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=87.2

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC-CCCCCcchhhcCCCCCCeEe
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN-RFLQLPSTSMGNLCNLHSLD  464 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  464 (636)
                      ..++.|++++|.++.. |.   -.++|+.|.+++|.-...+|..+.  ++|++|++++| .+...+       ++|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------cccceEE
Confidence            7899999999987543 41   234799999998665456676553  68999999998 554332       3588888


Q ss_pred             CcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC--CCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeC
Q 037514          465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG--GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL  542 (636)
Q Consensus       465 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L  542 (636)
                      ++.+.... ++..        .++|+.|.+.+++..  ...|..+.  ++|+.|++++|... ..|..+.  .+|+.|++
T Consensus       119 L~~n~~~~-L~~L--------PssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        119 IKGSATDS-IKNV--------PNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eCCCCCcc-cccC--------cchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            87765431 1111        245677877543311  11121111  57999999998865 3454444  58999998


Q ss_pred             cCcc
Q 037514          543 SFNV  546 (636)
Q Consensus       543 s~n~  546 (636)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.52  E-value=0.00023  Score=60.89  Aligned_cols=44  Identities=11%  Similarity=0.244  Sum_probs=18.7

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCccc
Q 037514           73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQ  118 (636)
Q Consensus        73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  118 (636)
                      .|..+++|+.+.+.. .+..+....|.++++|+.+.+..+ +..+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~   50 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG   50 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc
Confidence            455555666666653 344444455666666666666543 44433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.0003  Score=60.18  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC
Q 037514           96 PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF  175 (636)
Q Consensus        96 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  175 (636)
                      ..|.++++|+.+.+.. .++.+....         |.++++|+.+.+.++ +..++.  ..|..+++++.+.+.+ .+..
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~---------F~~~~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENA---------FSNCTSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTT---------TTT-TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETS-TT-E
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhh---------ccccccccccccccc-ccccce--eeeecccccccccccc-cccc
Confidence            4566777777777763 455544432         666666777776664 555533  4566666667666654 3333


Q ss_pred             CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcC
Q 037514          176 PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS  218 (636)
Q Consensus       176 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~  218 (636)
                      .....|..+++|+.+++..+ +.......|.+. +|+.+.+..
T Consensus        72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            34455666666666666543 433334445554 666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=8.1e-06  Score=75.49  Aligned_cols=86  Identities=20%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             CCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514           77 LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV  156 (636)
Q Consensus        77 l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  156 (636)
                      +.++++|+.=||.+.++  .-..+++.|++|.||-|+|+++.+           +..|++|++|+|..|.|.++.. ..-
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldE-L~Y   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDE-LEY   83 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHH-HHH
Confidence            34667777777777644  224567778888888887777655           7777888888888887777643 235


Q ss_pred             hCCCCCCCEEEccCCcCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFP  176 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~  176 (636)
                      +.++|+|++|.|..|.-.+.
T Consensus        84 LknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             HhcCchhhhHhhccCCcccc
Confidence            66777777777777765443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.00031  Score=65.07  Aligned_cols=13  Identities=38%  Similarity=0.595  Sum_probs=5.7

Q ss_pred             CCCCEEEccCCcC
Q 037514          161 PSLVELHLSNCQL  173 (636)
Q Consensus       161 ~~L~~L~L~~n~l  173 (636)
                      |+|+++++++|++
T Consensus        91 P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   91 PNLKVLNLSGNKI  103 (260)
T ss_pred             CceeEEeecCCcc
Confidence            4444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00025  Score=65.72  Aligned_cols=85  Identities=28%  Similarity=0.329  Sum_probs=46.7

Q ss_pred             hcCCCCCCEEeCcCC--ccCCccChhhhCCCCCCeEeCcCcccccc-ccccccCCCCCCEEECcCCcceeecCh---hhh
Q 037514          507 LGNLLCLEYLGLSEN--SFLGSLPTSIGNLSHLRALYLSFNVMSRI-ISENIGQLSEPYMLDLYGNSWEGVITE---KHF  580 (636)
Q Consensus       507 l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~  580 (636)
                      +..+++|++|.++.|  ++++.++-....+++|+++++++|++..+ .-..+..+.+|..|++.+|.-+. .-+   .+|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf  139 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF  139 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence            444556666666666  45544444445556666666666665531 11223445556666666665443 222   356


Q ss_pred             cCCCCCCeeeCC
Q 037514          581 RNLSGLDYLTIS  592 (636)
Q Consensus       581 ~~l~~L~~L~ls  592 (636)
                      ..+++|++||--
T Consensus       140 ~ll~~L~~LD~~  151 (260)
T KOG2739|consen  140 LLLPSLKYLDGC  151 (260)
T ss_pred             HHhhhhcccccc
Confidence            666777766543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=7e-05  Score=69.50  Aligned_cols=100  Identities=25%  Similarity=0.245  Sum_probs=76.3

Q ss_pred             CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccc-cccccCCCCCCEEE
Q 037514          487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII-SENIGQLSEPYMLD  565 (636)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~  565 (636)
                      .+.+.|+..||.++++  .....++.|+.|.||-|+|+..-|  +..|++|++|+|..|.|..+. ...+.++++|+.|-
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4557888888888732  234678889999999998875443  678899999999999887652 24567889999999


Q ss_pred             CcCCcceeecCh----hhhcCCCCCCeee
Q 037514          566 LYGNSWEGVITE----KHFRNLSGLDYLT  590 (636)
Q Consensus       566 L~~n~l~~~~~~----~~~~~l~~L~~L~  590 (636)
                      |..|+..|.-+.    .++..+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            999988776665    3567778888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.62  E-value=0.00088  Score=71.96  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CCCCcEEEccCCc-CCcccCCCC-CCCCCCCEEECCCCC-CCCCc-chhhcCCCCCCeEeCcCCcC
Q 037514          409 LPSLYWLRLGGNN-LSGELSTSL-PDCSRLTALDIGGNR-FLQLP-STSMGNLCNLHSLDISYNHI  470 (636)
Q Consensus       409 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l  470 (636)
                      +++|+.++++.+. ++...-..+ ..|++|++|.+.+|. ++... ......++.|++|++++|..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4556666666655 332211111 125666666665555 33322 11233456666666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.0011  Score=71.23  Aligned_cols=160  Identities=23%  Similarity=0.205  Sum_probs=88.7

Q ss_pred             CCccEEECccCcCCcc--CCcccCCCCCCcEEEccCC-cCCcc----cCCCCCCCCCCCEEECCCCC-CCCCcchhhc-C
Q 037514          386 QKLSVIDLSNNKFFGG--ILSSLCSLPSLYWLRLGGN-NLSGE----LSTSLPDCSRLTALDIGGNR-FLQLPSTSMG-N  456 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~  456 (636)
                      +.|+.+.+.++.-...  .......++.|+.|+++++ .....    .......+++|+.|+++.+. ++...-..+. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            4555555555432221  1223344566666666652 11111    11234456899999999998 6654444443 4


Q ss_pred             CCCCCeEeCcCCc-CCCchhhhHHhhhcCCCCcccEEEcccCcCCCC--CchhhcCCCCCCEEeCcCCc----cC-----
Q 037514          457 LCNLHSLDISYNH-ITGEIKELTNAFSACNVSTLETLDLASNKLGGN--LPDSLGNLLCLEYLGLSENS----FL-----  524 (636)
Q Consensus       457 l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~----~~-----  524 (636)
                      +++|++|.+.+|. +++..   +..... .++.|++|++++|.....  +.....++++|+.|.+....    ++     
T Consensus       268 c~~L~~L~l~~c~~lt~~g---l~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~  343 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEG---LVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS  343 (482)
T ss_pred             CCCcceEccCCCCccchhH---HHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence            8899999988887 45332   222222 247789999998876411  22334556666665544432    11     


Q ss_pred             --------CccChhhhCCCCCCeEeCcCccccc
Q 037514          525 --------GSLPTSIGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       525 --------~~~p~~l~~l~~L~~L~Ls~n~l~~  549 (636)
                              ......+..+++++.+.+.++....
T Consensus       344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~  376 (482)
T KOG1947|consen  344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISD  376 (482)
T ss_pred             HhhccCchhHhHHHHhcCCCcchhhhhhhhccC
Confidence                    1111234567777777777776443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.21  E-value=0.00035  Score=73.17  Aligned_cols=189  Identities=23%  Similarity=0.188  Sum_probs=105.1

Q ss_pred             CccEEEccCCCCCcCCC----hhhcCCCCcceeccccccCCCcchhhHHhhcC---CCccEEECccCcCCcc----CCcc
Q 037514          337 SLRQMAINDCQLGSAFP----SWLKTQASVFKLTLSNAAISDTIPDWFWGVIS---QKLSVIDLSNNKFFGG----ILSS  405 (636)
Q Consensus       337 ~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~---~~L~~L~ls~n~l~~~----~~~~  405 (636)
                      .+..+.+.+|.+.....    ..+....+|+.|++++|.+.+.....+.....   ..+++|++..|.++..    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            47778888888765433    34566778888888888887543333332211   2455666666666543    2334


Q ss_pred             cCCCCCCcEEEccCCcCCcc----cCCCCC----CCCCCCEEECCCCCCCCCc----chhhcCCCC-CCeEeCcCCcCCC
Q 037514          406 LCSLPSLYWLRLGGNNLSGE----LSTSLP----DCSRLTALDIGGNRFLQLP----STSMGNLCN-LHSLDISYNHITG  472 (636)
Q Consensus       406 ~~~l~~L~~L~L~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~  472 (636)
                      +.....++.++++.|.+...    ++..+.    ...++++|++.+|.++...    ...+...+. +..+++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            44566777777777766311    122222    3556777777777766322    222334444 5667777777654


Q ss_pred             chhhhHHhhhcCCCCcccEEEcccCcCCCCC----chhhcCCCCCCEEeCcCCccCC
Q 037514          473 EIKELTNAFSACNVSTLETLDLASNKLGGNL----PDSLGNLLCLEYLGLSENSFLG  525 (636)
Q Consensus       473 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~  525 (636)
                      .........-...-..++.++++.|.++..-    ...+..++.++.+.++.|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3222222111110145567777777776432    3345566677777777776653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.81  E-value=0.00044  Score=72.46  Aligned_cols=187  Identities=26%  Similarity=0.229  Sum_probs=111.9

Q ss_pred             ccEEECccCcCCccC----CcccCCCCCCcEEEccCCcCCccc----CCCCCCC-CCCCEEECCCCCCCCCc----chhh
Q 037514          388 LSVIDLSNNKFFGGI----LSSLCSLPSLYWLRLGGNNLSGEL----STSLPDC-SRLTALDIGGNRFLQLP----STSM  454 (636)
Q Consensus       388 L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~  454 (636)
                      +..+.+.+|.+....    ...+...+.|+.|++++|.+.+..    ...+... ..+++|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677888888875433    334556788888999998886321    2223333 56777888888877533    3345


Q ss_pred             cCCCCCCeEeCcCCcCCCchhhhHH-hhhc--CCCCcccEEEcccCcCCCC----CchhhcCCCC-CCEEeCcCCccCCc
Q 037514          455 GNLCNLHSLDISYNHITGEIKELTN-AFSA--CNVSTLETLDLASNKLGGN----LPDSLGNLLC-LEYLGLSENSFLGS  526 (636)
Q Consensus       455 ~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~--~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~~~~~  526 (636)
                      .....++.++++.|.+.......+. .+..  ....++++|++++|.++..    +...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5577888888888877421111111 1111  1235677888888877622    1233455555 66678887776532


Q ss_pred             ----cChhhhCC-CCCCeEeCcCccccccc----cccccCCCCCCEEECcCCcceee
Q 037514          527 ----LPTSIGNL-SHLRALYLSFNVMSRII----SENIGQLSEPYMLDLYGNSWEGV  574 (636)
Q Consensus       527 ----~p~~l~~l-~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~  574 (636)
                          ....+..+ ..+++++++.|.++..-    .+.+..++.++.+.++.|++...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence                22234444 56677777777776542    33445566777777777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.79  E-value=0.013  Score=32.28  Aligned_cols=11  Identities=55%  Similarity=0.797  Sum_probs=4.4

Q ss_pred             CEEeCcCCccC
Q 037514          514 EYLGLSENSFL  524 (636)
Q Consensus       514 ~~L~Ls~n~~~  524 (636)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.12  E-value=0.024  Score=31.18  Aligned_cols=17  Identities=35%  Similarity=0.384  Sum_probs=8.2

Q ss_pred             CCEEECcCCcceeecChh
Q 037514          561 PYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       561 L~~L~L~~n~l~~~~~~~  578 (636)
                      |++|++++|+++ .+|.+
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            445555555544 34443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.06  E-value=0.064  Score=27.29  Aligned_cols=13  Identities=54%  Similarity=0.667  Sum_probs=4.5

Q ss_pred             CCCEEeCcCCCCC
Q 037514          103 NLQYLDLSYQNLK  115 (636)
Q Consensus       103 ~L~~L~Ls~n~l~  115 (636)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.056  Score=48.47  Aligned_cols=86  Identities=16%  Similarity=0.172  Sum_probs=55.4

Q ss_pred             CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccC-cCCCCCchhhcCCCC
Q 037514          434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN-KLGGNLPDSLGNLLC  512 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~  512 (636)
                      ..++.+|-++..|....-..+..++.++.|.+.+|.-.+  ...+..+.. ..++|+.|++++| +|++.--..+..+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--D~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--DWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--hHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhh
Confidence            356778888887776666667778888888888776332  223333333 3477777777777 466444456667777


Q ss_pred             CCEEeCcCCc
Q 037514          513 LEYLGLSENS  522 (636)
Q Consensus       513 L~~L~Ls~n~  522 (636)
                      |+.|.|.+=.
T Consensus       178 Lr~L~l~~l~  187 (221)
T KOG3864|consen  178 LRRLHLYDLP  187 (221)
T ss_pred             hHHHHhcCch
Confidence            7777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.78  E-value=0.16  Score=29.12  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=15.1

Q ss_pred             CCCCCEEECcCCcceeecChhhhc
Q 037514          558 LSEPYMLDLYGNSWEGVITEKHFR  581 (636)
Q Consensus       558 l~~L~~L~L~~n~l~~~~~~~~~~  581 (636)
                      +++|+.|+|++|++. .+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356677777777776 46766554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.78  E-value=0.16  Score=29.12  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=15.1

Q ss_pred             CCCCCEEECcCCcceeecChhhhc
Q 037514          558 LSEPYMLDLYGNSWEGVITEKHFR  581 (636)
Q Consensus       558 l~~L~~L~L~~n~l~~~~~~~~~~  581 (636)
                      +++|+.|+|++|++. .+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356677777777776 46766554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.43  E-value=0.0055  Score=55.72  Aligned_cols=87  Identities=20%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514           73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN  152 (636)
Q Consensus        73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  152 (636)
                      .+..+++++.||++.|++. .+...|+.++.|..||++.|.+.-.+-+          ++....++++++..|..+..|.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d----------~~q~~e~~~~~~~~n~~~~~p~  105 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKD----------AKQQRETVNAASHKNNHSQQPK  105 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhh----------HHHHHHHHHHHhhccchhhCCc
Confidence            4556788999999998876 3445677888888888888877655432          5556666666666666665542


Q ss_pred             hhhhhCCCCCCCEEEccCCcC
Q 037514          153 WLQVVNELPSLVELHLSNCQL  173 (636)
Q Consensus       153 ~~~~~~~l~~L~~L~L~~n~l  173 (636)
                         .+++.++++++++-.+.+
T Consensus       106 ---s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  106 ---SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ---cccccCCcchhhhccCcc
Confidence               556666666666655553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.75  E-value=0.075  Score=47.68  Aligned_cols=84  Identities=23%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             CCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcch-hhHHhhcCCCccEEECccC-cCCccCCcccCCCCCC
Q 037514          335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNN-KFFGGILSSLCSLPSL  412 (636)
Q Consensus       335 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L  412 (636)
                      -..++.++-+++.|...--+.+..++.++.|.+.+|.--+... .-+.+ ..++|+.|++++| +|++.-...+..+++|
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhh
Confidence            3456777777777766555666777777777777664432211 11122 1156666666655 3443333344445555


Q ss_pred             cEEEccC
Q 037514          413 YWLRLGG  419 (636)
Q Consensus       413 ~~L~L~~  419 (636)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            5555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.75  E-value=0.45  Score=27.22  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=11.4

Q ss_pred             CCCCEEECCCCCCCCCcchhh
Q 037514          434 SRLTALDIGGNRFLQLPSTSM  454 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~  454 (636)
                      ++|++|+|++|+++.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            355556666665555554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.75  E-value=0.45  Score=27.22  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=11.4

Q ss_pred             CCCCEEECCCCCCCCCcchhh
Q 037514          434 SRLTALDIGGNRFLQLPSTSM  454 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~  454 (636)
                      ++|++|+|++|+++.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            355556666665555554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.28  E-value=0.035  Score=50.68  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=22.8

Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV  546 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  546 (636)
                      ..|+++.|++. ..|..++....+..+++..|..+ ..|.++...++++++++.+|.
T Consensus        68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            33444444443 33444444444444444444333 334444444444444444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.16  E-value=0.67  Score=25.88  Aligned_cols=15  Identities=53%  Similarity=0.678  Sum_probs=6.6

Q ss_pred             CCCCeEeCcCCcCCC
Q 037514          458 CNLHSLDISYNHITG  472 (636)
Q Consensus       458 ~~L~~L~l~~n~l~~  472 (636)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.66  E-value=1.1  Score=25.63  Aligned_cols=16  Identities=44%  Similarity=0.615  Sum_probs=9.8

Q ss_pred             CCCCEEeCcCCCCCcc
Q 037514          102 SNLQYLDLSYQNLKEY  117 (636)
Q Consensus       102 ~~L~~L~Ls~n~l~~~  117 (636)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666666553

>TIGR00864 PCC polycystin cation channel protein

Probab=80.17  E-value=0.8  Score=56.96  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             ECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514          565 DLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF  610 (636)
Q Consensus       565 ~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  610 (636)
                      ||++|+|+ .+|.+.|..+++|+.|+|++|  +..|+|...|+..|
T Consensus         1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgN--Pw~CDC~L~WL~~W   43 (2740)
T TIGR00864         1 DISNNKIS-TIEEGICANLCNLSEIDLSGN--PFECDCGLARLPRW   43 (2740)
T ss_pred             CCCCCcCC-ccChHHhccCCCceEEEeeCC--ccccccccHHHHHH
Confidence            57888887 688888888888899999888  66677777766544

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	636
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-20
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 133/541 (24%), Positives = 220/541 (40%), Gaps = 94/541 (17%)
Query: 96  PNIGNLSNLQYLDLS--------------YQNLKEYQITKELWVSDLIWLPDLSSSRYLH 141
           P +G+ S LQ+LD+S                 LK   I+   +V  +  LP L S +YL 
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 272
Query: 142 LEGMKLS-KVTNWLQVVNELPSLVELHLSNCQL----------------------NFPQS 178
           L   K + ++ ++L    +  +L  L LS                          NF   
Sbjct: 273 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 179 LP---FLNFTSLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSI-PKFPPGKM 233
           LP    L    L +L+LS++ F+ ++P+ L N+S +L+TL+L S+  SG I P       
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLY 293
             L+ L L  NGF+G   +   TLS C+      L    ++GTI  ++G L++L  L L+
Sbjct: 391 NTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 294 RNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFP 353
            N  +G I +                            ++       +  ND  L    P
Sbjct: 448 LNMLEGEIPQELM-------------------------YVKTLETLILDFND--LTGEIP 480
Query: 354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413
           S L    ++  ++LSN  ++  IP W   +  + L+++ LSNN F G I + L    SL 
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 414 WLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
           WL L  N  +G +  ++     ++ A  I G R++ + +  M   C+     + +  I  
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 473 EIKELTNAFSACNVS----------------TLETLDLASNKLGGNLPDXXXXXXXXXXX 516
           E     +  + CN++                ++  LD++ N L G +P            
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 517 XXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
                   GS+P  +G+L  L  L LS N +   I + +  L+    +DL  N+  G I 
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 577 E 577
           E
Sbjct: 719 E 719

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNR 445
           +L ++++S+N+F G I      L SL +L L  N  +GE+   L   C  LT LD+ GN 
Sbjct: 245 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 446 FL-------------------------QLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
           F                          +LP  ++  +  L  LD+S+N  +GE+ E    
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 481 FSACNVSTLETLDLASNKLGGN-LPDXXXX-XXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
            SA    +L TLDL+SN   G  LP+                  F G +P ++ N S L 
Sbjct: 363 LSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
           +L+LSFN +S  I  ++G LS+   L L+ N  EG I ++
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 220/541 (40%), Gaps = 94/541 (17%)
Query: 96  PNIGNLSNLQYLDLS--------------YQNLKEYQITKELWVSDLIWLPDLSSSRYLH 141
           P +G+ S LQ+LD+S                 LK   I+   +V  +  LP L S +YL 
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 275
Query: 142 LEGMKLS-KVTNWLQVVNELPSLVELHLSNCQL----------------------NFPQS 178
           L   K + ++ ++L    +  +L  L LS                          NF   
Sbjct: 276 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 179 LP---FLNFTSLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSI-PKFPPGKM 233
           LP    L    L +L+LS++ F+ ++P+ L N+S +L+TL+L S+  SG I P       
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLY 293
             L+ L L  NGF+G   +   TLS C+      L    ++GTI  ++G L++L  L L+
Sbjct: 394 NTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 294 RNSWKGIITENHFQXXXXXXXXXXXXXXXXXVFTMRSDWIPPFSLRQMAINDCQLGSAFP 353
            N  +G I +                                 +L  + ++   L    P
Sbjct: 451 LNMLEGEIPQELMYVK---------------------------TLETLILDFNDLTGEIP 483
Query: 354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413
           S L    ++  ++LSN  ++  IP W   +  + L+++ LSNN F G I + L    SL 
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 414 WLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
           WL L  N  +G +  ++     ++ A  I G R++ + +  M   C+     + +  I  
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 473 EIKELTNAFSACNVS----------------TLETLDLASNKLGGNLPDXXXXXXXXXXX 516
           E     +  + CN++                ++  LD++ N L G +P            
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 517 XXXXXSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
                   GS+P  +G+L  L  L LS N +   I + +  L+    +DL  N+  G I 
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 577 E 577
           E
Sbjct: 722 E 722

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNR 445
           +L ++++S+N+F G I      L SL +L L  N  +GE+   L   C  LT LD+ GN 
Sbjct: 248 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 446 FL-------------------------QLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
           F                          +LP  ++  +  L  LD+S+N  +GE+ E    
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 481 FSACNVSTLETLDLASNKLGGN-LPDXXXX-XXXXXXXXXXXXSFLGSLPTSIGNLSHLR 538
            SA    +L TLDL+SN   G  LP+                  F G +P ++ N S L 
Sbjct: 366 LSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
           +L+LSFN +S  I  ++G LS+   L L+ N  EG I ++
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 10/203 (4%)
Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPS 411
            P  +     +  L +++  +S  IPD+   +  + L  +D S N   G +  S+ SLP+
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 412 LYWLRLGGNNLSGELSTSLPDCSRL-TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
           L  +   GN +SG +  S    S+L T++ I  NR       +  NL NL  +D+S N +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 471 TGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDXXXXXXXXXXXXXXXXSFLGSLPTS 530
            G+   L  +         + + LA N L  +L                     G+LP  
Sbjct: 210 EGDASVLFGS-----DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 531 IGNLSHLRALYLSFNVMSRIISE 553
           +  L  L +L +SFN +   I +
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	636
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-80
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 4e-80
 Identities = 139/517 (26%), Positives = 217/517 (41%), Gaps = 62/517 (11%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPP--NIGNLSNLQYLDLSYQNLKEYQITKELWV 125
             +  F      L  LDLS +S SG +    ++G+ S L++L++S   L         + 
Sbjct: 91  GSVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------FP 141

Query: 126 SDLIWLPDLSSSRYLHLEGMKLS-KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNF 184
             +     L+S   L L    +S        + +    L  L +S  +++    +     
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--GDVDVSRC 199

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
            +L  L++S +NF++ IP +L + S L  L++  ++LSG   +        L+ L+++ N
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSN 257

Query: 245 GFSGEKEQFIQTLSGCNNSTLETLETQ--RMNGTISENI-GQLAELVALNLYRNSWKGII 301
            F G        +      +L+ L     +  G I + + G    L  L+L  N + G +
Sbjct: 258 QFVGP-------IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 302 TENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361
               F + + L SL LSS+N              FS           G      L     
Sbjct: 311 PPF-FGSCSLLESLALSSNN--------------FS-----------GELPMDTLLKMRG 344

Query: 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC--SLPSLYWLRLGG 419
           +  L LS    S  +P+     +S  L  +DLS+N F G IL +LC     +L  L L  
Sbjct: 345 LKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 420 NNLSGELSTSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
           N  +G++  +L +CS L +L +  N     +PS S+G+L  L  L +  N + GEI +  
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQ-- 460

Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR 538
                  V TLETL L  N L G +P  L N   L ++ LS N   G +P  IG L +L 
Sbjct: 461 ---ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575
            L LS N  S  I   +G       LDL  N + G I
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  250 bits (642), Expect = 9e-74
 Identities = 135/567 (23%), Positives = 220/567 (38%), Gaps = 91/567 (16%)

Query: 42  CTEREREALLKFKGLIDPSARLSSWKSPIP----EFVY----SLKKLKLLDLSESSFSGM 93
              RE   L+ FK ++     L  W S       + V      +  + L     +     
Sbjct: 9   SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSA 68

Query: 94  LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153
           +  ++ +L+ L+ L LS  ++             +      +S   L L    LS     
Sbjct: 69  VSSSLLSLTGLESLFLSNSHI----------NGSVSGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 154 LQVVNELPSLVELHLSNCQLNFPQSLP-FLNFTSLSILELSYDNFNSQIPQWLF---NIS 209
           L  +     L  L++S+  L+FP  +   L   SL +L+LS ++ +              
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 210 TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE 269
            L  L +  +++SG +      +  NL  LD++ N FS                      
Sbjct: 179 ELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFS---------------------- 213

Query: 270 TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR 329
                  I   +G  + L  L++  N   G  +       T+L  L +SS+     F   
Sbjct: 214 -----TGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQ----FVGP 262

Query: 330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLS 389
              IPP  L+ +                       L+L+    +  IPD+  G     L+
Sbjct: 263 ---IPPLPLKSLQY---------------------LSLAENKFTGEIPDFLSGACD-TLT 297

Query: 390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSRLTALDIGGNRFL- 447
            +DLS N F+G +     S   L  L L  NN SGEL   +L     L  LD+  N F  
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 448 QLPSTSMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS 506
           +LP  S+ NL  +L +LD+S N+ +G I            +TL+ L L +N   G +P +
Sbjct: 358 ELPE-SLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 507 LGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL 566
           L N   L  L LS N   G++P+S+G+LS LR L L  N++   I + +  +     L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 567 YGNSWEGVITEKHFRNLSGLDYLTISS 593
             N   G I      N + L+++++S+
Sbjct: 474 DFNDLTGEIPS-GLSNCTNLNWISLSN 499

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  210 bits (536), Expect = 6e-59
 Identities = 126/527 (23%), Positives = 200/527 (37%), Gaps = 83/527 (15%)

Query: 69  PIPEFVY-SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
            IP+F+  +   L  LDLS + F G +PP  G+ S L+ L LS  N    ++  +     
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMD----- 337

Query: 128 LIWLPDLSSSRYLHLEGMKLS-KVTNWLQVVNELPSLVELHLSNCQLN--FPQSLPFLNF 184
              L  +   + L L   + S ++   L   N   SL+ L LS+   +     +L     
Sbjct: 338 --TLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
            +L  L L  + F  +IP  L N S LV+L+L  + LSG+IP    G +  LR L L +N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLN 452

Query: 245 GFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITEN 304
              GE                           I + +  +  L  L L  N   G I   
Sbjct: 453 MLEGE---------------------------IPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 305 HFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364
              N T LN + LS+                           +L    P W+    ++  
Sbjct: 486 -LSNCTNLNWISLSN--------------------------NRLTGEIPKWIGRLENLAI 518

Query: 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG 424
           L LSN + S  IP        + L  +DL+ N F G I +++          +  N ++G
Sbjct: 519 LKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572

Query: 425 ELSTSLPDCSRLTALDIGGN--RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS 482
           +    + +          GN   F  + S  +  L   +  +I+     G      +   
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD--- 629

Query: 483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542
             N  ++  LD++ N L G +P  +G++  L  L L  N   GS+P  +G+L  L  L L
Sbjct: 630 --NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI-TEKHFRNLSGLDY 588
           S N +   I + +  L+    +DL  N+  G I     F       +
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 8e-13
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 484 CNVSTLETLDLASNKL---GGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRAL 540
           C    + ++DL+S  L      +  SL +L  LE L LS +   GS+       + L +L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSL 105

Query: 541 YLSFNVMSRIISE--NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
            LS N +S  ++   ++G  S    L++  N+ +          L+ L+ L +S+++
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 39/178 (21%)

Query: 51  LKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLS 110
              K     +  L  ++    E +  L      +++   + G   P   N  ++ +LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 111 YQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSN 170
           Y  L    I KE+                                    +P L  L+L +
Sbjct: 641 YNMLSG-YIPKEI----------------------------------GSMPYLFILNLGH 665

Query: 171 CQLN--FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIP 226
             ++   P  +   +   L+IL+LS +  + +IPQ +  ++ L  ++L ++ LSG IP
Sbjct: 666 NDISGSIPDEVG--DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 33/94 (35%)

Query: 21  PLFLTAIGIGSNYDCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKL 80
            +++   G+          +       E L +       +     +         +   +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 81  KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNL 114
             LD+S +  SG +P  IG++  L  L+L + ++
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (517), Expect = 8e-57
 Identities = 114/549 (20%), Positives = 189/549 (34%), Gaps = 63/549 (11%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVS 126
                +       L  L L  +S   +         NL  LDLS+  L           +
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---------T 136

Query: 127 DLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTS 186
            L     L + + L L   K+  + +    +    SL +L LS+ Q+       F     
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 187 LSILELSYDNFNSQIPQWLF---NISTLVTLNLRSSQLSGSIPK-FPPGKMCNLRRLDLA 242
           L  L L+       + + L      +++  L+L +SQLS +    F   K  NL  LDL+
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 243 INGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIIT 302
            N                            +N   +++   L +L    L  N+ + +  
Sbjct: 257 YN---------------------------NLNVVGNDSFAWLPQLEYFFLEYNNIQHLF- 288

Query: 303 ENHFQNLTKLNSLYLSSSNKSLVFTMRS-DWIPPFS------LRQMAINDCQLGSAFPSW 355
            +    L  +  L L  S      ++ S   I  FS      L  + + D  +     + 
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 356 LKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY 413
                ++  L+LSN+  S      + F  +    L +++L+ NK       +   L  L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 414 WLRLGGNNLSGELS-TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
            L LG N +  EL+         +  + +  N++LQL   S   + +L  L +    +  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN--------SFL 524
            +    + F    +  L  LDL++N +     D L  L  LE L L  N        +  
Sbjct: 469 -VDSSPSPFQ--PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLS 584
           G     +  LSHL  L L  N    I  E    L E  ++DL  N+   +     F N  
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQV 584

Query: 585 GLDYLTISS 593
            L  L +  
Sbjct: 585 SLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  185 bits (471), Expect = 1e-50
 Identities = 108/548 (19%), Positives = 174/548 (31%), Gaps = 62/548 (11%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVS 126
           +          K L  LDLS +  S         L NLQ L LS   ++  +       S
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-------S 162

Query: 127 DLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF---PQSLPFLN 183
           + + +   SS + L L   ++ + +      + +  L  L L+N QL      +    L 
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 184 FTSLSILELSYDNFNSQIPQWLFN--ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDL 241
            TS+  L LS    ++           + L  L+L  + L+          +  L    L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFL 279

Query: 242 AINGFSGEKEQFI------QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN 295
             N         +      + L+   + T +++    +      +   L  L  LN+  N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 296 SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
              GI   N F  L  L  L LS+S  SL        +   +   +A +           
Sbjct: 340 DIPGIK-SNMFTGLINLKYLSLSNSFTSLRT------LTNETFVSLAHSPLH-------- 384

Query: 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGI-LSSLCSLPSLYW 414
                    L L+   IS    D F  +    L V+DL  N+    +       L +++ 
Sbjct: 385 --------ILNLTKNKISKIESDAFSWLGH--LEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRF--LQLPSTSMGNLCNLHSLDISYNHITG 472
           + L  N        S      L  L +       +    +    L NL  LD+S N+I  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 473 EIKELTNAFSACNVSTLETLDLASNKL--------GGNLPDSLGNLLCLEYLGLSENSFL 524
                 +      +  LE LDL  N L         G     L  L  L  L L  N F 
Sbjct: 495 IN---DDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLS 584
                   +L  L+ + L  N ++ + +           L+L  N    V  +       
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 585 GLDYLTIS 592
            L  L + 
Sbjct: 610 NLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  178 bits (453), Expect = 4e-48
 Identities = 98/531 (18%), Positives = 182/531 (34%), Gaps = 79/531 (14%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
              + +L+L+ +    +   N    S L  LD+ +  +   ++  EL       LP L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQK----LPML-- 75

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
            + L+L+  +LS++++  +      +L ELHL +  +   ++ PF+   +L  L+LS++ 
Sbjct: 76  -KVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 197 FNSQIPQWLFNISTLVTLNLRSSQLSGSIPK-FPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
            +S        +  L  L L ++++     +        +L++L+L+ N           
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF------ 186

Query: 256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ--NLTKLN 313
                                       +  L  L L        +TE        T + 
Sbjct: 187 ---------------------SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
           +L LS+S  S             +   +                   ++  L LS   ++
Sbjct: 226 NLSLSNSQLS--------TTSNTTFLGLKWT----------------NLTMLDLSYNNLN 261

Query: 374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST----- 428
               D F  +   +L    L  N        SL  L ++ +L L  +     +S      
Sbjct: 262 VVGNDSFAWL--PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 429 ----SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSAC 484
               S      L  L++  N    + S     L NL  L +S +  +         F + 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN-ETFVSL 378

Query: 485 NVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLS 543
             S L  L+L  NK+     D+   L  LE L L  N     L       L ++  +YLS
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 544 FNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKH-FRNLSGLDYLTISS 593
           +N   ++   +   +     L L   + + V +    F+ L  L  L +S+
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (404), Expect = 1e-41
 Identities = 108/523 (20%), Positives = 189/523 (36%), Gaps = 94/523 (17%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            ++ D S    +  +P ++   +N+  L+L++  L+       L  ++      L     
Sbjct: 6   HEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRR------LPAANFTRYSQL---TS 53

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L +    +SK+    ++  +LP L  L+L + +L+      F   T+L+ L L  ++   
Sbjct: 54  LDVGFNTISKLEP--ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSG 259
                      L+TL+L  + LS S       ++ NL+ L L+ N     K +    L  
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSE---ELDI 167

Query: 260 CNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
             NS+L+ L                       L  N  K       F  + +L  L+L++
Sbjct: 168 FANSSLKKL----------------------ELSSNQIKEFS-PGCFHAIGRLFGLFLNN 204

Query: 320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT---LSNAAISDTI 376
                                      QLG +    L  + +   +    LSN+ +S T 
Sbjct: 205 --------------------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL 436
              F G+    L+++DLS N        S   LP L +  L  NN+    S SL     +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS 496
             L++  +                    IS   +          FS   +  LE L++  
Sbjct: 299 RYLNLKRS---------------FTKQSISLASLPKID-----DFSFQWLKCLEHLNMED 338

Query: 497 NKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIG----NLSHLRALYLSFNVMSRIIS 552
           N + G   +    L+ L+YL LS +       T+        S L  L L+ N +S+I S
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 553 ENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           +    L    +LDL  N     +T + +R L  +  + +S + 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (375), Expect = 9e-38
 Identities = 95/458 (20%), Positives = 161/458 (35%), Gaps = 45/458 (9%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIG---NLSNLQYLDLSYQNLKEYQITKEL 123
           K   P   +++ +L  L L+       L   +      ++++ L LS   L     T   
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST---TSNT 240

Query: 124 WVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLN 183
               L      ++   L L    L+ V N       LP L    L    +    S     
Sbjct: 241 TFLGL----KWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 184 FTSLSILEL---------SYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC 234
             ++  L L         S  +           +  L  LN+  + + G I       + 
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLI 353

Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ--RMNGTISENIGQLAELVALNL 292
           NL+ L L+ +  S       +T     +S L  L     +++   S+    L  L  L+L
Sbjct: 354 NLKYLSLSNSFTSLRTLTN-ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 293 YRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF-SLRQMAINDCQLGS- 350
             N     +T   ++ L  +  +YLS +    +     +      SL+++ +    L + 
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT---RNSFALVPSLQRLMLRRVALKNV 469

Query: 351 -AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK--------FFGG 401
            + PS  +   ++  L LSN  I++   D   G+  +KL ++DL +N           GG
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGG 527

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
            +  L  L  L+ L L  N           D   L  +D+G N    LP++   N  +L 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 462 SLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
           SL++  N IT   K     F       L  LD+  N  
Sbjct: 588 SLNLQKNLITSVEK---KVFGP-AFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 2e-32
 Identities = 74/403 (18%), Positives = 134/403 (33%), Gaps = 54/403 (13%)

Query: 210 TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE 269
           +    +    +L+    + P     N+  L+L  N                         
Sbjct: 5   SHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRR--------------------- 39

Query: 270 TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR 329
                   + N  + ++L +L++  N+   +      Q L  L  L L  +   L     
Sbjct: 40  ------LPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNE--LSQLSD 90

Query: 330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLS 389
             +    +L ++ +    +     +    Q ++  L LS+  +S T       +  + L 
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQ 148

Query: 390 VIDLSNNKFFGGILS--SLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
            + LSNNK          + +  SL  L L  N +            RL  L +   +  
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 448 QLPSTSMG---NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLP 504
              +  +       ++ +L +S + ++         F     + L  LDL+ N L     
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSN---TTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISEN---------I 555
           DS   L  LEY  L  N+       S+  L ++R L L  +   + IS            
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 556 GQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598
             L     L++  N   G+     F  L  L YL++S+S +SL
Sbjct: 326 QWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 64  SSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKEL 123
            +       F+  L  L +L+L  + F  +      +L  L+ +DL   NL         
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL--------- 572

Query: 124 WVSDLI--WLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL-----NFP 176
             + L      +  S + L+L+   ++ V           +L EL +          +  
Sbjct: 573 --NTLPASVFNNQVSLKSLNLQKNLITSV-EKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

Query: 177 QSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS 222
             + ++N T  +I ELS  ++    P        +   +  S + S
Sbjct: 630 WFVNWINETHTNIPELS-SHYLCNTPPHYHGFP-VRLFDTSSCKDS 673

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (470), Expect = 7e-51
 Identities = 98/524 (18%), Positives = 175/524 (33%), Gaps = 36/524 (6%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
                 SL  L  L L+ +    +       LS+LQ L     NL            +  
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---------LENF 118

Query: 130 WLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSI 189
            +  L + + L++    +       +  + L +L  L LS+ ++             + +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 190 LELSYD---NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           L LS D   N  + I    F    L  L LR++  S ++ K     +  L    L +  F
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 247 SGE---KEQFIQTLSGCNNSTLETLETQRMN---GTISENIGQLAELVALNLYRNSWKGI 300
             E   ++     L G  N T+E      ++     I +    L  + + +L   + + +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 301 ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA 360
                F        L L +       T     +   SL+++     + G+AF        
Sbjct: 298 ---KDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGN 420
               L+ +  +         +G  +  L  +DLS N     + S+   L  L  L    +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 421 NLSGELSTSLP-DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN 479
           NL      S+      L  LDI         +     L +L  L ++ N        L +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--LPD 464

Query: 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539
            F+   +  L  LDL+  +L    P +  +L  L+ L +S N+F          L+ L+ 
Sbjct: 465 IFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 540 LYLSFNVMSRIISENIGQLSEP-YMLDLYGNSWEGVITEKHFRN 582
           L  S N +     + +         L+L  N +      + F  
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (469), Expect = 1e-50
 Identities = 124/531 (23%), Positives = 201/531 (37%), Gaps = 41/531 (7%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S  +L++LDLS      +      +LS+L  L L+   ++            L     LS
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---------LALGAFSGLS 100

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELSY 194
           S + L      L+ + N    +  L +L EL++++  +  F     F N T+L  L+LS 
Sbjct: 101 SLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPG--KMCNLRRLDLAINGFSGEK-E 251
           +   S     L  +  +  LNL        +    PG  K   L +L L  N  S    +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNS-----WKGIITENHF 306
             IQ L+G     L   E +        +   L  L  L +         +      + F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
             LT ++S  L S           D+   F  + + + +C+ G      LK   S+ +LT
Sbjct: 279 NCLTNVSSFSLVSVT----IERVKDFSYNFGWQHLELVNCKFGQFPTLKLK---SLKRLT 331

Query: 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNK--FFGGILSSLCSLPSLYWLRLGGNNLSG 424
            ++    +   +         L  +DLS N   F G    S     SL +L L  N +  
Sbjct: 332 FTSNKGGNAFSEVD----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSM-GNLCNLHSLDISYNHITGEIKELTNAFSA 483
            +S++     +L  LD   +   Q+   S+  +L NL  LDIS+ H           F  
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IF-- 441

Query: 484 CNVSTLETLDLASNKLGGNL-PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542
             +S+LE L +A N    N  PD    L  L +L LS+       PT+  +LS L+ L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
           S N    + +     L+   +LD   N       ++     S L +L ++ 
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (350), Expect = 8e-35
 Identities = 83/493 (16%), Positives = 139/493 (28%), Gaps = 95/493 (19%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQY----LDLSYQNLKEYQITKELW 124
            +PE+  +L  L+ LDLS +    +   ++  L  +      LDLS   +   Q      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---- 195

Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP-QSLPFLN 183
                                             +   L +L L N   +          
Sbjct: 196 --------------------------------AFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 184 FTSLSILELSYDNFNSQ------IPQWLFNISTLVTLNLRSSQLSGSIPKFP--PGKMCN 235
              L +  L    F ++          L  +  L     R + L   +         + N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN 295
           +    L             +      N   + LE           + +L  L  L    N
Sbjct: 284 VSSFSLVSVTIE-------RVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSN 335

Query: 296 SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
                 +     +L  L  L LS                         N           
Sbjct: 336 KGGNAFS---EVDLPSLEFLDLSR------------------------NGLSFKGCCSQS 368

Query: 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGI-LSSLCSLPSLYW 414
                S+  L LS   +  T+   F G   ++L  +D  ++        S   SL +L +
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLHSLDISYNHITGE 473
           L +   +     +      S L  L + GN F           L NL  LD+S   +   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 474 IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGN 533
                 AF+  ++S+L+ L+++ N            L  L+ L  S N  + S    + +
Sbjct: 486 SP---TAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 534 L-SHLRALYLSFN 545
             S L  L L+ N
Sbjct: 541 FPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (335), Expect = 7e-33
 Identities = 83/452 (18%), Positives = 154/452 (34%), Gaps = 40/452 (8%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ 220
            S   L LS   L    S  F +F  L +L+LS     +       ++S L TL L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 221 LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETL---ETQRMNGTI 277
           +           + +L++L       +  +   I  L      TL+ L        +  +
Sbjct: 88  IQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL-----KTLKELNVAHNLIQSFKL 141

Query: 278 SENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLS---SSNKSLVFTMRSDWIP 334
            E    L  L  L+L  N  + I      + L ++  L LS   S N   +  ++     
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNP--MNFIQPGAFK 198

Query: 335 PFSLRQMAINDCQLGSAFP-------SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQK 387
              L ++ + +               + L+    V     +   +         G+ +  
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 388 LSVIDLS-NNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
           +    L+  + +   I+     L ++    L    +                L++   +F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKF 316

Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG--GNLP 504
            Q P+     L +L  L  + N          NAFS  ++ +LE LDL+ N L   G   
Sbjct: 317 GQFPT---LKLKSLKRLTFTSNKG-------GNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI-GQLSEPYM 563
            S      L+YL LS N  + ++ ++   L  L  L    + + ++   ++   L     
Sbjct: 367 QSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 564 LDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           LD+             F  LS L+ L ++ ++
Sbjct: 426 LDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS 456

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 3e-24
 Identities = 51/251 (20%), Positives = 81/251 (32%), Gaps = 35/251 (13%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            L LS   +       F+      L V+DLS  +       +  SL  L  L L GN + 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 424 GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
                +    S L  L         L +  +G+L  L  L++++N I             
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------------ 137

Query: 484 CNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA---- 539
                              LP+   NL  LE+L LS N       T +  L  +      
Sbjct: 138 ----------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599
           L LS N M+ I      ++   + L L  N     + +   + L+GL+   +        
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 600 FNIRHDWIAPF 610
            N+     +  
Sbjct: 241 GNLEKFDKSAL 251

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 58/402 (14%), Positives = 119/402 (29%), Gaps = 74/402 (18%)

Query: 215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN 274
           N+    +  +  K P     + + LDL+ N                              
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHL------------------------- 43

Query: 275 GTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIP 334
              S +     EL  L+L R   + I  +  +Q+L+ L++L L+                
Sbjct: 44  --GSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG--------------- 85

Query: 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394
                        + S         +S+ KL      ++            + L  ++++
Sbjct: 86  -----------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVA 132

Query: 395 NNKFFGGIL-SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTA----LDIGGNRFLQL 449
           +N      L     +L +L  L L  N +     T L    ++      LD+  N    +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 450 PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD-SLG 508
              +      LH L +  N  +  +  +           +  L L   +  GNL      
Sbjct: 193 QPGA-FKEIRLHKLTLRNNFDSLNV--MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 509 NLLCLEYLGLSENS------FLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
            L  L  L + E        +L  +      L+++ +  L    + R+  ++        
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQ 307

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRH 604
            L+L    +         ++L  L + +    N+    ++  
Sbjct: 308 HLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 45/263 (17%), Positives = 78/263 (29%), Gaps = 46/263 (17%)

Query: 62  RLSSWKSPIPEFVYSLKKLKLLDLSES--SFSGMLPPNIGNLSNLQYLDLSYQNLKEYQI 119
             +S K         L  L+ LDLS +  SF G    +    ++L+YLDLS+  +     
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--- 387

Query: 120 TKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQS 178
                      +                            L  L  L   +  L    + 
Sbjct: 388 -----------MSSNFLG----------------------LEQLEHLDFQHSNLKQMSEF 414

Query: 179 LPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR 238
             FL+  +L  L++S+ +           +S+L  L +  +    +       ++ NL  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ--RMNGTISENIGQLAELVALNLYRNS 296
           LDL+             +LS      L+ L           +     L  L  L+   N 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 297 WKGIITENHFQNLTKLNSLYLSS 319
                 +      + L  L L+ 
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVS 126
             +      L++L+ LD   S+   M   ++  +L NL YLD+S+ +       +  +  
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------RVAFNG 439

Query: 127 DLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTS 186
               L  L     L + G    +      +  EL +L  L LS CQL       F + +S
Sbjct: 440 IFNGLSSL---EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           L +L +S++NF S        +++L  L+   + +  S  +       +L  L+L  N F
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 247 SG 248
           + 
Sbjct: 556 AC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWV 125
           +         L  L++L ++ +SF     P+I   L NL +LDLS   L++         
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--------- 484

Query: 126 SDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT 185
             L                             N L SL  L++S+       + P+    
Sbjct: 485 --LSP------------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 186 SLSILELSYDNFNSQIPQWLFNI-STLVTLNLRSSQLSGSIP 226
           SL +L+ S ++  +   Q L +  S+L  LNL  +  + +  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  180 bits (458), Expect = 5e-49
 Identities = 78/548 (14%), Positives = 168/548 (30%), Gaps = 75/548 (13%)

Query: 58  DPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEY 117
           + +  L  W +     + S  ++  L L     SG +P  IG L+ L+ L L     K  
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 118 QITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177
           +            +    S        M   K                         F  
Sbjct: 121 ERL-----FGPKGISANMSDEQKQKMRMHYQK------------------------TFVD 151

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237
             P  +F+ L    ++ D     I +          +   S+ ++         ++  LR
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV--MRLTKLR 209

Query: 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSW 297
           +  +  + F  E        + C     E  E  +   T       L +L  + +Y    
Sbjct: 210 QFYMGNSPFVAE--------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 298 KGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK 357
              +     + L ++  + ++ +       ++ DW                       ++
Sbjct: 262 LTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVG------------EKIQ 308

Query: 358 TQASVFKLTLSNAAISD-TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLR 416
                  + +    +    +      +  +KL +++   N+   G L +  S   L  L 
Sbjct: 309 I------IYIGYNNLKTFPVETSLQKM--KKLGMLECLYNQ-LEGKLPAFGSEIKLASLN 359

Query: 417 LGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPST-SMGNLCNLHSLDISYNHITGEIK 475
           L  N ++   +       ++  L    N+   +P+     ++  + ++D SYN I     
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 476 ELTNAFSA--CNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF-------LGS 526
           +  +           + +++L++N++     +       L  + L  N         L  
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 527 LPTSIGNLSHLRALYLSFNVMSRIISE-NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSG 585
              +  N   L ++ L FN ++++  +     L     +DL  NS+    T+    N S 
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSST 537

Query: 586 LDYLTISS 593
           L    I +
Sbjct: 538 LKGFGIRN 545

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (451), Expect = 5e-48
 Identities = 84/577 (14%), Positives = 184/577 (31%), Gaps = 88/577 (15%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSG----MLPPNIGNLSNLQYLDLSYQNLKEYQITK--E 122
            +P+ +  L +L++L L             P  I    + +       + ++  +     
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 123 LWVSDLIWL--------PDLSSSRYLHLEGMKLSKVTNWLQVV----NELPSLVELHLSN 170
              SDLI            +  S  + L+  ++ +++N +  V      L  L + ++ N
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN 215

Query: 171 CQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPP 230
                   +      +       Y            N+  L  + + +      +P F  
Sbjct: 216 SPF-----VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 231 GKMCNLRRLDLAINGFSG---EKEQFIQTLSGCNNSTLETL---ETQRMNGTISENIGQL 284
             +  ++ +++A N        K+ +           ++ +           +  ++ ++
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
            +L  L    N  +G +    F +  KL SL L+                          
Sbjct: 330 KKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAY------------------------- 362

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF------ 398
             Q+     ++      V  L+ ++  +   IP+ F       +S ID S N+       
Sbjct: 363 -NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 399 -FGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLP------- 450
            F  +  +     ++  + L  N +S          S L+++++ GN   ++P       
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 451 STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNL 510
           + +  N   L S+D+ +N +T     L++ F A  +  L  +DL+ N      P    N 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTK----LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 511 LCLEYLGLSE------NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYML 564
             L+  G+        N  L   P  I     L  L +  N + ++  +    +S    L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV---L 592

Query: 565 DLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN 601
           D+  N    +    +           +    +  +  
Sbjct: 593 DIKDNPNISID-LSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 3e-21
 Identities = 47/403 (11%), Positives = 111/403 (27%), Gaps = 103/403 (25%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           P+   +  +KKL +L+   +   G   P  G+   L  L+L+Y  + E            
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE------------ 367

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
             +P                              +  L  ++ +L   P      + + +
Sbjct: 368 --IPA---------------------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 188 SILELSYDNFNS-------QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD 240
           S ++ SY+   S        +    F    + ++NL ++Q+S    +        L  ++
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF-STGSPLSSIN 463

Query: 241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI 300
           L  N  +   +  +                       +EN      L +++L  N    +
Sbjct: 464 LMGNMLTEIPKNSL--------------------KDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 301 ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA 360
             +     L  L  + LS                                 FP+     +
Sbjct: 504 SDDFRATTLPYLVGIDLSY--------------------------NSFSK-FPTQPLNSS 536

Query: 361 SVFKLTLSNAA------ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYW 414
           ++    + N             P+         L+ + + +N     +   +   P++  
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSNDI-RKVNEKI--TPNISV 591

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
           L +  N       + +          +  ++   +      ++
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (454), Expect = 1e-47
 Identities = 79/539 (14%), Positives = 159/539 (29%), Gaps = 73/539 (13%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVS 126
           K  +P+ +  L +LK+L     S +                +     ++ +     L   
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 127 DLIWLPDLS--------------SSRYLHLEGMKLSKVTNWLQVV----NELPSLVELHL 168
             + L DL                   + L+  ++  +TN +  +      L  L  ++ 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 169 SNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF 228
           +N                       Y            N+  L  + L +      +P F
Sbjct: 456 ANSPFT---YDN--IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELV 288
               +  L+ L++A N      +                         ++++     ++ 
Sbjct: 511 L-YDLPELQSLNIACNRGISAAQLKAD------------------WTRLADDEDTGPKIQ 551

Query: 289 ALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQL 348
              +  N+ +        Q + KL  L     NK         +     L  + ++  Q+
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NK---VRHLEAFGTNVKLTDLKLDYNQI 607

Query: 349 GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG-----GIL 403
                 +      V  L  S+  +   IP+ F       +  +D S NK           
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPS-------TSMGN 456
                  +   + L  N +    +      S ++ + +  N    +P         +  N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
              L ++D+ +N +T     L++ F A  +  L  +D++ N      P    N   L+  
Sbjct: 727 TYLLTTIDLRFNKLT----SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 517 GLSE------NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569
           G+        N  L   PT I     L  L +  N + ++  +   QL     LD+  N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (445), Expect = 2e-46
 Identities = 76/553 (13%), Positives = 167/553 (30%), Gaps = 72/553 (13%)

Query: 58  DPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEY 117
           + +  L  W       + +  ++  L L+     G +P  IG L+ L+ L     +    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 118 QITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177
                          +      +H + M L     + Q +N    L +    N ++   +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLD----YDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237
               ++     I  L+  N  + I + +  ++ L  +   +S  +               
Sbjct: 419 KDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFTYDNI----------- 465

Query: 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSW 297
                                   +      +  +       +   L +L  + LY    
Sbjct: 466 ----------------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 298 KGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK 357
              + +    +L +L SL ++ +       +++DW                 +       
Sbjct: 504 MTQLPDF-LYDLPELQSLNIACNRGISAAQLKADW-----------------TRLADDED 545

Query: 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRL 417
           T   +    +    + +         +  KL ++D  +NK     L +  +   L  L+L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMV-KLGLLDCVHNKV--RHLEAFGTNVKLTDLKL 602

Query: 418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPST-SMGNLCNLHSLDISYNHITGEIKE 476
             N +            ++  L    N+   +P+  +  ++  + S+D SYN I  E + 
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 477 LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF-------LGSLPT 529
           ++ +          T+ L+ N++     +       +  + LS N         L     
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 530 SIGNLSHLRALYLSFNVMSRIISE-NIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDY 588
           +  N   L  + L FN ++ +  +     L     +D+  N +    T+    N S L  
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ--PLNSSQLKA 780

Query: 589 LTISSSNSSLVFN 601
             I         N
Sbjct: 781 FGI-RHQRDAEGN 792

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 15/106 (14%), Positives = 32/106 (30%)

Query: 497 NKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIG 556
           +  G      L N   +  L L+     G +P +IG L+ L+ L    +  +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 557 QLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNI 602
           +   P M +   +       +        L+   +     +    +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (431), Expect = 2e-45
 Identities = 84/518 (16%), Positives = 166/518 (32%), Gaps = 35/518 (6%)

Query: 75  YSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
            S  +L  L L+ +    M    +     L++L      +        +    L     L
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI------SSIDFIPLHNQKTL 131

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
                L+L    +S +   L        L  L   N  +++       +    + L L+ 
Sbjct: 132 ---ESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 195 -DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK-FPPGKMCNLRRLDLAINGFSGEKEQ 252
             N  + I    F+ +   +LN   +Q    I K      + +L                
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
             + L   +  ++  L+        S      + L  L+L       +   +    L+ L
Sbjct: 247 VFEGLCEMSVESIN-LQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTL 303

Query: 313 NSLYLSSSNKSLVFTMRSDWIPPFSLRQMA-------INDCQLGSAFPSWLKTQASVFKL 365
             L LS++        + + +   S              + +        L+   ++ +L
Sbjct: 304 KKLVLSAN--------KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425
            LS+  I  +            L  ++LS N+       +    P L  L L    L  +
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 426 LSTSLP-DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSAC 484
            + S   +   L  L++  +            L  L  L++  NH      + TN+    
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ-- 473

Query: 485 NVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544
            +  LE L L+   L      +  +L  + ++ LS N    S   ++ +L  +  L L+ 
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 545 NVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRN 582
           N +S I+   +  LS+   ++L  N  +   +  +F  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (408), Expect = 2e-42
 Identities = 103/522 (19%), Positives = 177/522 (33%), Gaps = 36/522 (6%)

Query: 81  KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYL 140
           K  +      +  +P  +   ++ + L+ S+  L        +  +    L +L    +L
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPT------IQNTTFSRLINL---TFL 62

Query: 141 HLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQ 200
            L   ++  +            L  L L+   L F          +L  L       +S 
Sbjct: 63  DLTRCQIYWIHE--DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 201 IPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGC 260
               L N  TL +L L S+ +S SI          L+ LD   N      +   + +S  
Sbjct: 121 DFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSK---EDMSSL 176

Query: 261 NNSTLETLETQRMN-GTISENIGQLAELVALNLYRNSWKG-IITENHFQNLTKLNSLYLS 318
             +T  +L     +   I       A   +LN         I        +  L      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 319 SSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPD 378
             +   +     + +   S+  + +      +   +     + + +L L+   +S  +P 
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295

Query: 379 WFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSRLT 437
              G+    L  + LS NKF      S  + PSL  L + GN    EL T  L +   L 
Sbjct: 296 GLVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 438 ALDIGGNR--FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA 495
            LD+  +        +  + NL +L SL++SYN           AF       LE LDLA
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT---EAFK--ECPQLELLDLA 408

Query: 496 SNKLGGNLPDS-LGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII--- 551
             +L      S   NL  L+ L LS +    S       L  L+ L L  N   +     
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
           + ++  L    +L L        I +  F +L  ++++ +S 
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 2e-37
 Identities = 91/464 (19%), Positives = 160/464 (34%), Gaps = 44/464 (9%)

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
            ++  + E + L+++   L       S   L  S   L   Q+  F    +L+ L+L+  
Sbjct: 13  VNKTYNCENLGLNEIPGTL-----PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
                      +   L TL L ++ L   + +        L+ L     G S      + 
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 256 TLSGCNNSTLETLETQ--RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
                   TLE+L      ++           +L  L+   N+   + ++    +L +  
Sbjct: 127 NQK-----TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQAT 180

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK--TQASVFKLTLSNAA 371
           +L L+ +   +   +          + +     Q        LK  T  S++  T  +  
Sbjct: 181 NLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 372 ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP 431
             D  P  F G+    +  I+L  + FF    ++      L  L L   +LS EL + L 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 432 DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLET 491
             S L  L +  N+F  L   S  N  +L  L I  N    E+          N+  L  
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--GCLE--NLENLRE 354

Query: 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
           LDL+ + +                               + NLSHL++L LS+N    + 
Sbjct: 355 LDLSHDDI----------------------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           +E   +  +  +LDL     +    +  F+NL  L  L +S S 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 2e-37
 Identities = 82/466 (17%), Positives = 152/466 (32%), Gaps = 33/466 (7%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
               +++ K L+ L L  +  S +  P       L+ LD          I   L   D+ 
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-----NAIH-YLSKEDMS 174

Query: 130 WLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN--FPQSLPFLNFTSL 187
            L   ++   L+L G  ++ +        +      L+    Q      + L      SL
Sbjct: 175 SLQQATN-LSLNLNGNDIAGIEPGA---FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 188 SILELSYDNFNSQIPQWLFNIS--TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING 245
            +      +     P     +   ++ ++NL+      +I          L+ LDL    
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATH 289

Query: 246 FSGEKEQFIQTLSGCNNSTLETLETQ--RMNGTISENIGQLAELVALNLYRNSWKGIITE 303
            S               STL+ L     +       +      L  L++  N+ +  +  
Sbjct: 290 LSELPSGL------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 304 NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF 363
              +NL  L  L LS  +                L+ + ++  +  S      K    + 
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            L L+   +        +  +   L V++LS++            LP+L  L L GN+  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 424 G---ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
               + + SL    RL  L +       +   +  +L  ++ +D+S+N +T        A
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI---EA 519

Query: 481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS 526
            S         L+LASN +   LP  L  L     + L +N    +
Sbjct: 520 LSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 13/238 (5%)

Query: 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG 424
           L  S   +       F  +    L+ +DL+  + +     +  S   L  L L  N L  
Sbjct: 38  LEFSFNVLPTIQNTTFSRL--INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSAC 484
              T+L     L  L         +    + N   L SL +  NHI+             
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL---PKGF-- 150

Query: 485 NVSTLETLDLASNKLGGNLPDSLGNL--LCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542
               L+ LD  +N +     + + +L       L L+ N  +  +     + +  ++L  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNF 209

Query: 543 SFNVMSRIISENIG--QLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL 598
                  +I + +    +   ++        E  I+   F  L  +   +I+      
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMSVESINLQKHYF 266

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 50/276 (18%), Positives = 92/276 (33%), Gaps = 33/276 (11%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPN-IGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
                 +   L  L +  ++    L    + NL NL+ LDLS+ +++             
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL------ 370

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
             L +LS  + L+L   +   +    +   E P L  L L+  +L       PF N   L
Sbjct: 371 -QLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPP--GKMCNLRRLDLAING 245
            +L LS+   +    Q    +  L  LNL+ +       +       +  L  L L+   
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 246 FSGEKEQFIQTLSG------CNN-------STLETLETQ-------RMNGTISENIGQLA 285
            S   +    +L         +N         L  L+          ++  +   +  L+
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547

Query: 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN 321
           +   +NL +N      +  +F    K N   L  + 
Sbjct: 548 QQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTE 583

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 8e-12
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 15/194 (7%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
                 + +L  L+ L+LS +    +          L+ LDL++  LK            
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--------KDA 417

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNF 184
                +L   + L+L    L   +   Q+ + LP+L  L+L                   
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
             L IL LS+ + +S       ++  +  ++L  ++L+ S  +           L+LA N
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH--LKGIYLNLASN 533

Query: 245 GFSGEKEQFIQTLS 258
             S      +  LS
Sbjct: 534 HISIILPSLLPILS 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (403), Expect = 1e-41
 Identities = 97/512 (18%), Positives = 164/512 (32%), Gaps = 36/512 (7%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
             +  + L  L  L L+ +      P +   L++L+ L      L            +  
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS---------LESF 122

Query: 130 WLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSI 189
            +  L + + L++    +          + L +LV + LS   +                
Sbjct: 123 PIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 190 LELSYD---NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           + LS D   N    I    F    L  L LR +  S +I K     +  L    L +  F
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 247 SGEKEQFI---QTLSGCNNSTLETLETQRMNGT--ISENIGQLAELVALNLYRNSWKGII 301
             E+   I     + G  + T++       N           LA + A++L   S   I 
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS---IK 298

Query: 302 TENHFQNLTKLNSLYLSSSN-KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA 360
                    K  SL +     K          +    L+ + +   +   +F        
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPT------LDLPFLKSLTLTMNKGSISFKKVALP-- 350

Query: 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGN 420
           S+  L LS  A+S +    +  + +  L  +DLS N     + ++   L  L  L    +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 421 NLSGELSTS-LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN 479
            L      S      +L  LDI               L +L++L ++ N        L+N
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT--LSN 467

Query: 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539
            F+  N + L  LDL+  +L          L  L+ L +S N+ L    +    L  L  
Sbjct: 468 VFA--NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
           L  SFN +                 +L  NS 
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (391), Expect = 3e-40
 Identities = 106/531 (19%), Positives = 179/531 (33%), Gaps = 43/531 (8%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +  +L+ LDLS      +       L +L  L L+  N         +          L+
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-N--------PIQSFSPGSFSGLT 104

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELSY 194
           S   L     KL+ + +    + +L +L +L++++  ++       F N T+L  ++LSY
Sbjct: 105 SLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPG--KMCNLRRLDLAINGFSGEK-E 251
           +   +     L  +     +NL        I        +   L  L L  N  S    +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVA-----LNLYRNSWKGIITENHF 306
             +Q L+G +   L   E +            +  L         L   +         F
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKF 281

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
             L  ++++ L+  +         D    F  + ++I  CQL       L     +  LT
Sbjct: 282 HCLANVSAMSLAGVS----IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLT 334

Query: 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNK--FFGGILSSLCSLPSLYWLRLGGNNLSG 424
           L+    S +            LS +DLS N   F G    S     SL  L L  N    
Sbjct: 335 LTMNKGSISFKKVAL----PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSM-GNLCNLHSLDISYNHITGEIKELTNAFSA 483
            +S +      L  LD   +   ++   S   +L  L  LDISY +   +       F  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG---IF-- 444

Query: 484 CNVSTLETLDLASNKL-GGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYL 542
             +++L TL +A N      L +   N   L +L LS+             L  L+ L +
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 543 SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
           S N +  + S +  QL     LD   N  E             L +  +++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (358), Expect = 9e-36
 Identities = 92/514 (17%), Positives = 167/514 (32%), Gaps = 50/514 (9%)

Query: 83  LDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHL 142
               +   S  +P +I   S+ + +DLS+  LK       L         +L   ++L L
Sbjct: 16  YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKI------LKSYSFSNFSEL---QWLDL 63

Query: 143 EGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIP 202
              ++  + +  +  + L  L  L L+   +       F   TSL  L        S   
Sbjct: 64  SRCEIETIED--KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 203 QWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNN 262
             +  + TL  LN+  + +           + NL  +DL+ N         +Q L     
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 263 STLETLETQRMN--GTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSS 320
               +L+   +N    I +   Q  +L  L L  N     I +   QNL  L+   L   
Sbjct: 182 V-NLSLDMS-LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 321 NKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWF 380
                             R + I +  +            ++ +  L+           F
Sbjct: 240 E-------------FKDERNLEIFEPSIMEGLC-----DVTIDEFRLTYTNDFSDDIVKF 281

Query: 381 WGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD 440
                  +S + L+        L  +        L +    L    +  LP    L +L 
Sbjct: 282 HC--LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLT 334

Query: 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
           +  N+           L +L  LD+S N ++        ++S    ++L  LDL+ N   
Sbjct: 335 LTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGC---CSYSDLGTNSLRHLDLSFNGAI 389

Query: 501 GNLPDSLGNLLCLEYLGLSENSFLGSLPTS-IGNLSHLRALYLSFNVMSRIISENIGQLS 559
             +  +   L  L++L    ++       S   +L  L  L +S+             L+
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 560 EPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
               L + GNS++       F N + L +L +S 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  119 bits (300), Expect = 2e-28
 Identities = 67/404 (16%), Positives = 128/404 (31%), Gaps = 43/404 (10%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPN-IGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           I +  +   KL  L L  +  S  +    + NL+ L    L     K+ +  +     + 
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF---EP 252

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS 188
             +  L             +  ++ +   + L ++  + L+   + + + +P        
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH--FKWQ 310

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
            L +            L     L +L L  ++ S S   F    + +L  LDL+ N  S 
Sbjct: 311 SLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSF 364

Query: 249 EKEQFIQTLSGCNNSTLETLETQRMN-GTISENIGQLAELVALNLYRNSWKGIITENHFQ 307
                  + S    ++L  L+        +S N   L EL  L+   ++ K +   + F 
Sbjct: 365 SGCC---SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTL 367
           +L KL  L +S                                 F        S+  L +
Sbjct: 422 SLEKLLYLDIS--------------------------YTNTKIDFDGIFLGLTSLNTLKM 455

Query: 368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELS 427
           +  +  D      +   +  L+ +DLS  +          +L  L  L +  NNL    S
Sbjct: 456 AGNSFKDNTLSNVFANTTN-LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 428 TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
           +       L+ LD   NR             +L   +++ N + 
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 11/226 (4%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           I      IDLS N        S  +   L WL L    +      +      L+ L + G
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG-N 502
           N        S   L +L +L      +       +       + TL+ L++A N +    
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLE---SFPI--GQLITLKKLNVAHNFIHSCK 144

Query: 503 LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA----LYLSFNVMSRIISENIGQL 558
           LP    NL  L ++ LS N         +  L         L +S N +   I +   Q 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG 203

Query: 559 SEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRH 604
            + + L L GN     I +   +NL+GL    +         N+  
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 48/263 (18%), Positives = 87/263 (33%), Gaps = 17/263 (6%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            + LS   +       F      +L  +DLS  +       +   L  L  L L GN + 
Sbjct: 36  NIDLSFNPLKILKSYSFSNF--SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 424 GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
                S    + L  L     +   L S  +G L  L  L++++N I     +L   FS 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFS- 150

Query: 484 CNVSTLETLDLASNKLGGNLPDSLGNL----LCLEYLGLSENSFLGSLPTSIGNLSHLRA 539
            N++ L  +DL+ N +     + L  L         L +S N  +  +         L  
Sbjct: 151 -NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHE 208

Query: 540 LYLSFNVMSRIISENIGQ-LSEPYMLDLYGNSWEG-----VITEKHFRNLSGLDYLTISS 593
           L L  N  S  I +   Q L+  ++  L    ++      +        L  +       
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 594 SNSSLVFNIRHDWIAPFNLYTIR 616
           + ++   +    +    N+  + 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMS 291

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
                  L  L  L ++ +SF      N+  N +NL +LDLS   L++  I+  +     
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ--ISWGV----- 492

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS 188
                L   + L++    L  + +     N+L SL  L  S  ++   + +      SL+
Sbjct: 493 --FDTLHRLQLLNMSHNNLLFLDS--SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 189 ILELSYDNFNS 199
              L+ ++   
Sbjct: 549 FFNLTNNSVAC 559

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (362), Expect = 2e-36
 Identities = 108/508 (21%), Positives = 177/508 (34%), Gaps = 61/508 (12%)

Query: 75  YSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
            SL  L  L L+ +    +       LS+LQ L     NL        L    +  L  L
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL------ASLENFPIGHLKTL 126

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
              + L++    +       +  + L +L  L LS+ ++             + +L LS 
Sbjct: 127 ---KELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 195 D---NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGE-- 249
           D   N  + I    F    L  L LR++  S ++ K     +  L    L +  F  E  
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 250 -KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQN 308
            ++     L G  N T+E      ++  + + I     L  ++ +      I     F  
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 309 LTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLS 368
                 L L +                           Q  +     LK      +LT +
Sbjct: 303 NFGWQHLELVN-----------------------CKFGQFPTLKLKSLK------RLTFT 333

Query: 369 NAAISDTIPDWFWGVISQKLSVIDLSNNK--FFGGILSSLCSLPSLYWLRLGGNNLSGEL 426
           +    +        V    L  +DLS N   F G    S     SL +L L  N +   +
Sbjct: 334 SNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 427 STSLPDCSRLTALDIGGNRFLQLPSTSM-GNLCNLHSLDISYNHITGEIKELTNAFSACN 485
           S++     +L  LD   +   Q+   S+  +L NL  LDIS+ H           F+   
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFN--G 443

Query: 486 VSTLETLDLASNKLGGNL-PDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLS 543
           +S+LE L +A N    N  PD    L  L +L LS+   L  L  +   +LS L+ L ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA 502

Query: 544 FNVMSRIISENIGQLSEPYMLDLYGNSW 571
            N +  +      +L+    + L+ N W
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 5e-33
 Identities = 100/526 (19%), Positives = 189/526 (35%), Gaps = 40/526 (7%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            K LDLS +    +   +  +   LQ LDLS   ++       +       L  L     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHL---ST 80

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L L G  +  +       + L SL +L      L   ++ P  +  +L  L ++++   S
Sbjct: 81  LILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 200 -QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ--T 256
            ++P++  N++ L  L+L S+++  SI       +  +  L+L+++  S     FIQ   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGA 196

Query: 257 LSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI-----ITENHFQNLTK 311
                   L           +   I  LA L    L    ++         ++  + L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 312 LNSLYLSSSNKSLVFTMRSDWIPPF-SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNA 370
           L       +          D      ++   ++    +          +   +     + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNFGWQHL 309

Query: 371 AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS--GELST 428
            + +     F  +  + L  +  ++NK  GG   S   LPSL +L L  N LS  G  S 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 429 SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVST 488
           S    + L  LD+  N  + + S  +  L  L  LD  ++++     +++      ++  
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK----QMSEFSVFLSLRN 422

Query: 489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVM 547
           L  LD++              L  LE L ++ NSF  +    I   L +L  L LS   +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 548 SRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
            ++       LS   +L++  N  + V     F  L+ L  + + +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (300), Expect = 1e-28
 Identities = 88/475 (18%), Positives = 166/475 (34%), Gaps = 60/475 (12%)

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
            S++ L L    L  + ++       P L  L LS C++   +   + + + LS L L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
           +   S        +S+L  L    + L+ S+  FP G +  L+ L++A N         I
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN--------LI 136

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
           Q+                    + E    L  L  L+L  N  +  I     + L ++  
Sbjct: 137 QSFK------------------LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL 177

Query: 315 LYLS---SSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFP-------SWLKTQASVFK 364
           L LS   S N   +  ++        L ++ + +               + L+    V  
Sbjct: 178 LNLSLDLSLNP--MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG-GILSSLCSLPSLYWLRLGGNNLS 423
              +   +         G+ +  +    L+   ++   I+     L ++    L    + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 424 GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
                          L++   +F Q P+     L +L  L  + N          NAFS 
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG-------GNAFSE 343

Query: 484 CNVSTLETLDLASNKLG--GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALY 541
            ++ +LE LDL+ N L   G    S      L+YL LS N  + ++ ++   L  L  L 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD 402

Query: 542 LSFNVMSRIISENI-GQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
              + + ++   ++   L     LD+             F  LS L+ L ++ ++
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS 456

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 70/419 (16%), Positives = 134/419 (31%), Gaps = 45/419 (10%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQY----LDLSYQNLKEYQIT---- 120
            +PE+  +L  L+ LDLS +    +   ++  L  +      LDLS   +   Q      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 121 ---KELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177
               +L + +     ++  +    L G+++ ++                  +   L    
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL------------GEFRNEGNLEKFD 247

Query: 178 SLPFLNFTSLSILELSY---DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC 234
                   +L+I E      D +   I      ++ + + +L S  +             
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYR 294
           +L  ++     F   K + ++ L+  +N                     L  L  L+L R
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-----------DLPSLEFLDLSR 356

Query: 295 NSWKGI-ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFP 353
           N               T L  L LS +      TM S+++    L  +      L     
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 354 -SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILS-SLCSLPS 411
            S   +  ++  L +S+          F G+    L V+ ++ N F    L      L +
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 412 LYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
           L +L L    L     T+    S L  L++  N+   +P      L +L  + +  N  
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 68/377 (18%), Positives = 128/377 (33%), Gaps = 35/377 (9%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPN-IGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           I    +   +L  L L  +  S  +    I  L+ L+   L    L E++    L   D 
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV---LGEFRNEGNLEKFDK 248

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVV-NELPSLVELHLSNCQLNFPQSLPFLNFTSL 187
             L  L +          L    + +  + N L ++    L +  +   +   +      
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGW 306

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFS 247
             LEL    F  Q P       +L  L   S++   +        + +L  LDL+ NG S
Sbjct: 307 QHLELVNCKFG-QFPTLKLK--SLKRLTFTSNKGG-NAFSE--VDLPSLEFLDLSRNGLS 360

Query: 248 GEKEQFIQTLSGCNNSTLETLETQRMNG----TISENIGQLAELVALNLYRNSWKGIITE 303
                  +     ++    +L+   ++     T+S N   L +L  L+   ++ K +   
Sbjct: 361 ------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 304 NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW-LKTQASV 362
           + F +L  L  L +S ++  + F    + +   SL  + +        F         ++
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 363 FKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNL 422
             L LS   +    P  F  +    L V+++++N+           L SL  + L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSL--SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 423 SGELSTSLPDCSRLTAL 439
                     C R+  L
Sbjct: 531 DC-------SCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 63/259 (24%), Positives = 95/259 (36%), Gaps = 14/259 (5%)

Query: 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419
            S   L LS   +       F+     +L V+DLS  +       +  SL  L  L L G
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN 479
           N +      +    S L  L         L +  +G+L  L  L++++N I     +L  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPE 143

Query: 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY----LGLSENSFLGSLPTSIGNLS 535
            FS  N++ LE LDL+SNK+       L  L  +      L LS N  +  +        
Sbjct: 144 YFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 200

Query: 536 HLRALYLSFNVMSRIISEN-IGQLSEPYMLDLYGNSWEGV--ITEKHFRNLSGLDYLTIS 592
            L  L L  N  S  + +  I  L+   +  L    +     + +     L GL  LTI 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 593 SSNSSLVFNIRHDWIAPFN 611
               + +     D I  FN
Sbjct: 261 EFRLAYLDYYLDDIIDLFN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (346), Expect = 4e-36
 Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 41/305 (13%)

Query: 290 LNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG 349
            +    +W G++  +      ++N+L LS  N           IP       ++ +    
Sbjct: 31  TDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPK-----PYPIPS------SLANLP-- 76

Query: 350 SAFPSWLKTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCS 408
                       +  L +     +   IP     +   +L  + +++    G I   L  
Sbjct: 77  -----------YLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQ 123

Query: 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL-QLPSTSMGNLCNLH-SLDIS 466
           + +L  L    N LSG L  S+     L  +   GNR    +P  S G+   L  S+ IS
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTIS 182

Query: 467 YNHITGEI-KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG 525
            N +TG+I     N         L  +DL+ N L G+     G+    + + L++NS   
Sbjct: 183 RNRLTGKIPPTFANL-------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 526 SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI-TEKHFRNLS 584
            L   +G   +L  L L  N +   + + + QL   + L++  N+  G I    + +   
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 585 GLDYL 589
              Y 
Sbjct: 295 VSAYA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (281), Expect = 3e-27
 Identities = 61/299 (20%), Positives = 118/299 (39%), Gaps = 45/299 (15%)

Query: 41  RCTEREREALLKFK-GLIDPSARLSSWKS-----------PIPEFVYSLKKLKLLDLSES 88
            C  ++++ALL+ K  L +P+  LSSW              + +      ++  LDLS  
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 89  SFSG--MLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMK 146
           +      +P ++ NL  L +L +   N     I   +          L+   YL++    
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--------KLTQLHYLYITHTN 112

Query: 147 LS-KVTNWLQVVNELPSLVELHLSNCQL--NFPQSLPFLNFTSLSILELSYDNFNSQIPQ 203
           +S  + ++L   +++ +LV L  S   L    P S+   +  +L  +    +  +  IP 
Sbjct: 113 VSGAIPDFL---SQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDGNRISGAIPD 167

Query: 204 WLFNISTLVT-LNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI-QTLSGCN 261
              + S L T + +  ++L+G IP      + NL  +DL+ N   G+             
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNMLEGD----ASVLFGSD- 220

Query: 262 NSTLETLETQR--MNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLS 318
               + +   +  +   + + +G    L  L+L  N   G + +     L  L+SL +S
Sbjct: 221 -KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 3e-21
 Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 61/255 (23%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           PIP  +  L +L  L ++ ++ SG +P  +  +  L  LD SY  L           S  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-----------SGT 140

Query: 129 I--WLPDLSSSRYLHLEGMKLS-----KVTNWLQVVNELPSLVE-LHLSNCQL--NFPQS 178
           +   +  L +   +  +G ++S        +          L   + +S  +L    P +
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGS-------FSKLFTSMTISRNRLTGKIPPT 193

Query: 179 LPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRR 238
              LN   L+ ++LS +           +      ++L  + L+  + K   G   NL  
Sbjct: 194 FANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNG 248

Query: 239 LDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWK 298
           LDL  N                              GT+ + + QL  L +LN+  N+  
Sbjct: 249 LDLRNNRIY---------------------------GTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 299 GII-TENHFQNLTKL 312
           G I    + Q     
Sbjct: 282 GEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS--LPTSIGNLSHLRALYLS-FNV 546
            T D  +    G L D+      +  L LS  +      +P+S+ NL +L  LY+   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 547 MSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           +   I   I +L++ + L +   +  G I +     +  L  L  S + 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNA 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (353), Expect = 9e-35
 Identities = 106/565 (18%), Positives = 183/565 (32%), Gaps = 66/565 (11%)

Query: 77  LKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           L++L+LL+L        +      NL NL+ LDL    +                   L 
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---------AFQGLF 97

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELSY 194
               L L    LS           L +L  L LS  Q+ +      F    SL  ++ S 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 195 DNFNSQIPQWLFNIS--TLVTLNLRSSQLSGSIPK-----FPPGKMCNLRRLDLAINGFS 247
           +         L  +   TL   +L ++ L   +         P +   L  LD++ NG++
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 248 GEKEQ-FIQTLSGCNNSTLETLETQRMNGTISENIGQLAE----------LVALNLYRNS 296
            +    F   +S     +L         G    NI    +          +  L+L    
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 297 WKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL 356
              +     F+ L  L  L L+ +  + +       +   +L+ + ++   LG  + S  
Sbjct: 278 VFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLD--NLQVLNLSYNLLGELYSSNF 334

Query: 357 KTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLR 416
                V  + L    I+      F  +  +KL  +DL +N      L+++  +PS+  + 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFL--EKLQTLDLRDNA-----LTTIHFIPSIPDIF 387

Query: 417 LGGNNLSG---------------------ELSTSLPDCSRLTALDIGGNRFLQLPSTSM- 454
           L GN L                       ++   L     L  L +  NRF         
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514
               +L  L +  N +    +          +S L+ L L  N L    P    +L  L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGV 574
            L L+ N  L  L  +    ++L  L +S N +     +    LS     D+  N +   
Sbjct: 508 GLSLNSNR-LTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVL---DITHNKFICE 562

Query: 575 ITEKHFRNLSGLDYLTISSSNSSLV 599
                F N      +TI+   + + 
Sbjct: 563 CELSTFINWLNHTNVTIAGPPADIY 587

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (330), Expect = 7e-32
 Identities = 110/557 (19%), Positives = 183/557 (32%), Gaps = 93/557 (16%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
           L   + L LS +    +   +   L  LQ L+L  Q          +       LP+L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNL-- 75

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP--QSLPFLNFTSLSILELSY 194
            R L L   K+  +         L  L EL L  C L+    +   F N  +L+ L+LS 
Sbjct: 76  -RILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 195 DNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPK-FPPGKMCNLRRLDLAINGF-SGEKE 251
           +   S      F  +++L +++  S+Q+         P +   L    LA N   S    
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK 311
            + + ++   N  LE L                      ++  N W   IT N    ++K
Sbjct: 193 DWGKCMNPFRNMVLEIL----------------------DVSGNGWTVDITGNFSNAISK 230

Query: 312 LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA 371
             +  L  ++  +        I                + F    ++  SV  L LS+  
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQ-----------NTFAGLARS--SVRHLDLSHGF 277

Query: 372 ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP 431
           +       F  +  + L V++L+ NK       +   L +L  L L  N L    S++  
Sbjct: 278 VFSLNSRVFETL--KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 432 DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG------------------- 472
              ++  +D+  N    +   +   L  L +LD+  N +T                    
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 473 ----------------EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL-GNLLCLEY 515
                            ++ L   +    V  L+ L L  N+      D        LE 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 516 LGLSENSFLGSLPTSI-----GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
           L L EN    +  T +       LSHL+ LYL+ N ++ +       L+    L L  N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 571 WEGVITEKHFRNLSGLD 587
              +       NL  LD
Sbjct: 516 LTVLSHNDLPANLEILD 532

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (346), Expect = 2e-34
 Identities = 103/513 (20%), Positives = 187/513 (36%), Gaps = 52/513 (10%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
           +K LDLS +  + +   ++   +NLQ L L    +        +       L  L    +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI------NTIEGDAFYSLGSL---EH 78

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELSYDNFN 198
           L L    LS +++       L SL  L+L          +  F N T+L  L +      
Sbjct: 79  LDLSDNHLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 199 SQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTL 257
           S+I +  F  +++L  L +++  L  +        + ++  L L ++  +   E F   L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 258 SGC-----NNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI---------ITE 303
           S        ++ L   +   +      +  +        L   S+  +         ++E
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 304 NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF 363
             F + T       + S   +V  +    +   ++R++ I    L     +       V 
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGK--VETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL---SSLCSLPSLYWLRLGGN 420
           ++T+ N+ +   +P  F   +   L  +DLS N      L   +   + PSL  L L  N
Sbjct: 314 RITVENSKVF-LVPCSFSQHLKS-LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 421 NLS--GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
           +L    +    L     LT+LDI  N F  +P  S      +  L++S   I        
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIR------- 423

Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR 538
                C   TLE LD+++N L  +    L     L+ L +S N  L +LP        L 
Sbjct: 424 -VVKTCIPQTLEVLDVSNNNL-DSFSLFLPR---LQELYISRNK-LKTLP-DASLFPVLL 476

Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
            + +S N +  +      +L+    + L+ N W
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (307), Expect = 2e-29
 Identities = 82/516 (15%), Positives = 180/516 (34%), Gaps = 43/516 (8%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S     + D    SF+  +P  +   + ++ LDLS+  +        +   DL    +L 
Sbjct: 3   SCDASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKI------TYIGHGDLRACANL- 52

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
             + L L+  +++ +         L SL  L LS+  L+   S  F   +SL  L L  +
Sbjct: 53  --QVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 196 NFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
            + +     LF N++ L TL + + +    I +     + +L  L++        + Q +
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
           +++    +    TL        +      L+ +  L L   +       +        + 
Sbjct: 169 KSIR---DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSP 224

Query: 315 LYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD 374
           +   +   S++     + +       + +++ +      + L          +S     +
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS 434
           T+           +  + +     F  + +    L  +  + +  + +     +      
Sbjct: 285 TV----------TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 435 RLTALDIGGNRFLQLP---STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLET 491
            L  LD+  N  ++     S   G   +L +L +S NH+   +++         +  L +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILL--TLKNLTS 391

Query: 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
           LD++ N     +PDS      + +L LS    +  + T I     L  L +S N +    
Sbjct: 392 LDISRNTF-HPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNNLDS-F 446

Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
           S  + +L E   L +  N  + +     F  L  + 
Sbjct: 447 SLFLPRLQE---LYISRNKLKTLPDASLFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 11/210 (5%)

Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
             V D  +  F   I S L    ++  L L  N ++      L  C+ L  L +  +R  
Sbjct: 7   SGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG-NLPDS 506
            +   +  +L +L  LD+S NH++      ++ F    +S+L+ L+L  N      +   
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS---SLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSL 118

Query: 507 LGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLD 565
             NL  L+ L +        +       L+ L  L +    +    S+++  + + + L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 566 LYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           L+ +     + E     LS + YL +  +N
Sbjct: 179 LHLSESA-FLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 67/431 (15%), Positives = 124/431 (28%), Gaps = 103/431 (23%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLK------------------EY 117
            L  L  L++   S       ++ ++ ++ +L L                          
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 118 QITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT--NWLQVVNELPSLVELHLSNCQLN- 174
                   S L      S  + L   G  L+  +    L+++  +  L E+   +C LN 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 175 ----------FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS 224
                         L  +   ++  L +        +      +  +  + + +S++   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324

Query: 225 IPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQL 284
           +P      + +L  LDL+ N         +      N++                  G  
Sbjct: 325 VPCSFSQHLKSLEFLDLSEN--------LMVEEYLKNSACK----------------GAW 360

Query: 285 AELVALNLYRNSWKGI-ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAI 343
             L  L L +N  + +  T      L  L SL +S +       M      P  +R + +
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT---FHPMPDSCQWPEKMRFLNL 417

Query: 344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL 403
           +   +                                     Q L V+D+SNN      L
Sbjct: 418 SSTGIRVVKTCIP-----------------------------QTLEVLDVSNNN-----L 443

Query: 404 SSLCS-LPSLYWLRLGGNNLSGELSTSLPDC---SRLTALDIGGNRFLQLPSTSMGNLCN 459
            S    LP L  L +  N L      +LPD      L  + I  N+   +P      L +
Sbjct: 444 DSFSLFLPRLQELYISRNKL-----KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 460 LHSLDISYNHI 470
           L  + +  N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 6/225 (2%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           ++  +  +DLS NK        L +  +L  L L  + ++     +      L  LD+  
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
           N    L S+  G L +L  L++  N        L       N++ L+TL + + +    +
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQ----TLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 504 P-DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
                  L  L  L +   S       S+ ++  +  L L  +  + ++      LS   
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWI 607
            L+L   +                  +   +   S++ +   + +
Sbjct: 200 YLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 54/324 (16%), Positives = 102/324 (31%), Gaps = 45/324 (13%)

Query: 287 LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDC 346
           + +L+L  N     I     +    L  L L S                           
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKS--------------------------S 60

Query: 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL 406
           ++ +       +  S+  L LS+  +S     WF  +    L  ++L  N +    ++SL
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSL 118

Query: 407 CS-LPSLYWLRLGGNNLSGELS-TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD 464
              L +L  LR+G      E+        + L  L+I         S S+ ++ ++H L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG---GNLPDSLGNLLCLEYLGLSEN 521
           +  +     ++   +  S+     L   +LA  +      +   S    L      L++ 
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 522 SF--LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP--------YMLDLYGNSW 571
           SF  L  L   I  LS +     + N +          +SE           L +     
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY- 297

Query: 572 EGVITEKHFRNLSGLDYLTISSSN 595
                   +  L  +  +T+ +S 
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSK 321

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-----YQITKE 122
               E + +LK L  LD+S ++F   +P +      +++L+LS   ++       Q  + 
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435

Query: 123 LWVSD--LIWLP-DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL 179
           L VS+  L      L   + L++   KL  + +        P L+ + +S  QL      
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL----FPVLLVMKISRNQLKSVPDG 491

Query: 180 PFLNFTSLSILELSYDNFN 198
            F   TSL  + L  + ++
Sbjct: 492 IFDRLTSLQKIWLHTNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (302), Expect = 4e-29
 Identities = 88/509 (17%), Positives = 187/509 (36%), Gaps = 77/509 (15%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +L +     L +++ +     +  +L  +  L      +             +  +  L+
Sbjct: 22  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI-----------KSIDGVEYLN 68

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           +   ++    +L+ +T     +  L  LV++ ++N Q+      P  N T+L+ L L  +
Sbjct: 69  NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNN 122

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
                 P  L N++ L  L L S+ +S  I       + +L++L              ++
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTIS-DISAL--SGLTSLQQLSFGNQVTD------LK 171

Query: 256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315
            L+      LE L+      +    + +L  L +L    N    I        LT L+ L
Sbjct: 172 PLANLTT--LERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT---PLGILTNLDEL 226

Query: 316 YLSSSNKSLVFTMRSDWIPPFS----LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA 371
            L+ +            I   +    L  + + + Q+ +  P  L     + +L L    
Sbjct: 227 SLNGNQLKD--------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 372 ISDTIPDWFWGVISQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTS 429
           IS+  P      ++    L+ ++L+ N+     +S + +L +L +L L  NN+S    + 
Sbjct: 277 ISNISP------LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISP 326

Query: 430 LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG--EIKELTNAFSACNVS 487
           +   ++L  L    N+   +   S+ NL N++ L   +N I+    +  LT         
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLTR-------- 376

Query: 488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVM 547
            +  L L          +   N+     +     + +   P +I +        +++N+ 
Sbjct: 377 -ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

Query: 548 SRIISENIGQLSEPYMLDLYGNSWEGVIT 576
           S   +E     S+P  +     ++ G +T
Sbjct: 434 S-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (301), Expect = 5e-29
 Identities = 100/482 (20%), Positives = 174/482 (36%), Gaps = 74/482 (15%)

Query: 96  PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ 155
                L+      L   N+           +D +   DL     L  + + +  +     
Sbjct: 18  FTDTALAEKMKTVLGKTNV-----------TDTVSQTDLDQVTTLQADRLGIKSIDG--- 63

Query: 156 VVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSYDNFNSQIPQWLFNISTLVTL 214
            V  L +L +++ SN QL     +  L N T L  + ++ +      P  L N++ L  L
Sbjct: 64  -VEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN 274
            L ++Q++   P      + NL RL+L+ N  S      I  LSG  +  L+ L      
Sbjct: 118 TLFNNQITDIDPL---KNLTNLNRLELSSNTISD-----ISALSGLTS--LQQLSFGN-Q 166

Query: 275 GTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIP 334
            T  + +  L  L  L++  N    +   +    LT L SL  +++  S         I 
Sbjct: 167 VTDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISD--------IT 215

Query: 335 PFS----LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSV 390
           P      L ++++N  QL       L +  ++  L L+N  IS+  P         KL+ 
Sbjct: 216 PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL----TKLTE 269

Query: 391 IDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLP 450
           + L  N+     +S L  L +L  L L  N L     + + +   LT L +  N    + 
Sbjct: 270 LKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325

Query: 451 STSMGNLCNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG 508
              + +L  L  L    N ++    +  LTN         +  L    N++       L 
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSDVSSLANLTN---------INWLSAGHNQISD--LTPLA 372

Query: 509 NLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG 568
           NL  +  LGL++ ++  +      N+S    +       + I    I         D+  
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTEPDITW 430

Query: 569 NS 570
           N 
Sbjct: 431 NL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (262), Expect = 5e-24
 Identities = 79/432 (18%), Positives = 147/432 (34%), Gaps = 77/432 (17%)

Query: 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSS 219
           L   ++  L    +    ++   +   ++ L+       S     +  ++ L  +N  ++
Sbjct: 23  LAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN 78

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISE 279
           QL+   P      +  L  + +  N  +      I  L+   N  L  L       T  +
Sbjct: 79  QLTDITP---LKNLTKLVDILMNNNQIAD-----ITPLANLTN--LTGLTLFNNQITDID 128

Query: 280 NIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLR 339
            +  L  L  L L  N+   I        LT L  L   +             + P +  
Sbjct: 129 PLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTD---------LKPLA-- 174

Query: 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNNK 397
                                ++ +L +S+  +SD         +++   L  +  +NN+
Sbjct: 175 ------------------NLTTLERLDISSNKVSDISV------LAKLTNLESLIATNNQ 210

Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
                ++ L  L +L  L L GN L      +L   + LT LD+  N+   L    +  L
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 458 CNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
             L  L +  N I+    +  LT          L  L+L  N+L       + NL  L Y
Sbjct: 265 TKLTELKLGANQISNISPLAGLTA---------LTNLELNENQLED--ISPISNLKNLTY 313

Query: 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575
           L L  N+     P  + +L+ L+ L+   N +S +   ++  L+    L    N    + 
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369

Query: 576 TEKHFRNLSGLD 587
              +   ++ L 
Sbjct: 370 PLANLTRITQLG 381

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.8 bits (239), Expect = 4e-21
 Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 59/374 (15%)

Query: 228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAEL 287
           F    +    +  L     +        + +  +   + TL+  R+     + +  L  L
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD-----TVSQTDLDQ--VTTLQADRLGIKSIDGVEYLNNL 70

Query: 288 VALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS----LRQMAI 343
             +N   N    I      +NLTKL  + ++++  +         I P +    L  + +
Sbjct: 71  TQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIAD--------ITPLANLTNLTGLTL 119

Query: 344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNNKFFGG 401
            + Q+       LK   ++ +L LS+  ISD         +S    L  +   N      
Sbjct: 120 FNNQITD--IDPLKNLTNLNRLELSSNTISDISA------LSGLTSLQQLSFGNQVTD-- 169

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
            L  L +L +L  L +  N +S    + L   + L +L    N+   +    +G L NL 
Sbjct: 170 -LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLD 224

Query: 462 SLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLS 519
            L ++ N +     +  LTN         L  LDLA+N++    P  L  L  L  L L 
Sbjct: 225 ELSLNGNQLKDIGTLASLTN---------LTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 520 ENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKH 579
            N    S  + +  L+ L  L L+ N +  I    I  L     L LY N+   +     
Sbjct: 274 ANQI--SNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS---P 326

Query: 580 FRNLSGLDYLTISS 593
             +L+ L  L   +
Sbjct: 327 VSSLTKLQRLFFYN 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 1e-28
 Identities = 89/411 (21%), Positives = 148/411 (36%), Gaps = 73/411 (17%)

Query: 163 LVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS 222
              L      +N  Q  P  +        L   +    +      + ++  L +   +++
Sbjct: 2   AATLATLPAPIN--QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 223 GSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIG 282
            SI       + NL  L+L  N  +      I  LS      L  L       T    + 
Sbjct: 58  -SIQGI--EYLTNLEYLNLNGNQITD-----ISPLSNLVK--LTNLYIGTNKITDISALQ 107

Query: 283 QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMA 342
            L  L  L L  ++   I       NLTK+ SL L +++                     
Sbjct: 108 NLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNL------------------- 145

Query: 343 INDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNNKFFG 400
                   +  S L     +  LT++ + + D  P      I+    L  + L+ N+   
Sbjct: 146 --------SDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLSLNYNQIED 191

Query: 401 GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL 460
             +S L SL SL++     N ++    T + + +RL +L IG N+   L    + NL  L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 461 HSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
             L+I  N I+    +K+LT          L+ L++ SN++       L NL  L  L L
Sbjct: 246 TWLEIGTNQISDINAVKDLTK---------LKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569
           + N         IG L++L  L+LS N ++ I    +  LS+    D    
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 1e-24
 Identities = 78/424 (18%), Positives = 151/424 (35%), Gaps = 84/424 (19%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
              L    +  + + P    +L+      L   ++           +D++   +L S   
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASV-----------TDVVTQEELESITK 48

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L + G K++ +      +  L +L  L+L+  Q+      P  N   L+ L +   N  +
Sbjct: 49  LVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGT-NKIT 101

Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSG 259
            I   L N++ L  L L    +S      P   +  +  L+L  N         +  LS 
Sbjct: 102 DISA-LQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGAN----HNLSDLSPLSN 153

Query: 260 CNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
                L  L            I  L +L +L+L  N  + I       +LT L+      
Sbjct: 154 MTG--LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYV 208

Query: 320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW 379
           +  +         I P                  + +     +  L + N  I+D  P  
Sbjct: 209 NQIT--------DITPV-----------------ANMT---RLNSLKIGNNKITDLSP-- 238

Query: 380 FWGVISQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT 437
               ++   +L+ +++  N+     ++++  L  L  L +G N +S    + L + S+L 
Sbjct: 239 ----LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLA 495
           +L +  N+        +G L NL +L +S NHIT    +  L+          +++ D A
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK---------MDSADFA 341

Query: 496 SNKL 499
           +  +
Sbjct: 342 NQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 3e-22
 Identities = 64/351 (18%), Positives = 126/351 (35%), Gaps = 51/351 (14%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
           L+ +  L ++    + +    I  L+NL+YL+L+   +           +D+  L +L  
Sbjct: 43  LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQI-----------TDISPLSNLVK 89

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
              L++   K++ ++     +  L +L EL+L+   ++     P  N T +  L L   N
Sbjct: 90  LTNLYIGTNKITDISA----LQNLTNLRELYLNEDNIS--DISPLANLTKMYSLNLGA-N 142

Query: 197 FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQT 256
            N      L N++ L  L +  S++       P   + +L  L L  N         I  
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIED-----ISP 194

Query: 257 LSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
           L+   +  L          T    +  +  L +L +  N    +       NL++L  L 
Sbjct: 195 LASLTS--LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLE 249

Query: 317 LSSSNKSLVFTMRSDWIPPFS----LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI 372
           + ++  S         I        L+ + +   Q+     S L   + +  L L+N  +
Sbjct: 250 IGTNQISD--------INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            +   +   G+    L+ + LS N      +  L SL  +         + 
Sbjct: 300 GNEDMEVIGGL--TNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.1 bits (235), Expect = 4e-21
 Identities = 68/334 (20%), Positives = 125/334 (37%), Gaps = 44/334 (13%)

Query: 265 LETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSL 324
             TL T             LAE +   L + S   ++T    + L  +  L ++      
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEK--- 55

Query: 325 VFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVI 384
                       +L  + +N  Q+    P  L     +  L +    I+D         +
Sbjct: 56  -VASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA------L 106

Query: 385 SQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG 442
                L  + L+ +      +S L +L  +Y L LG N+   +LS  L + + L  L + 
Sbjct: 107 QNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT 163

Query: 443 GNRFLQLPSTSMGNLCNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLG 500
            ++   +    + NL +L+SL ++YN I     +  LT+         L       N++ 
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTS---------LHYFTAYVNQIT 212

Query: 501 GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSE 560
                 + N+  L  L +  N       + + NLS L  L +  N +S I    +  L++
Sbjct: 213 D--ITPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDI--NAVKDLTK 266

Query: 561 PYMLDLYGNSWEGVITE-KHFRNLSGLDYLTISS 593
             ML++  N     I++     NLS L+ L +++
Sbjct: 267 LKMLNVGSNQ----ISDISVLNNLSQLNSLFLNN 296

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 7e-15
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 33/256 (12%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSY------------QNLKEYQITKEL 123
           +L KL  L +  +  +      + NL+NL+ L L+               +    +    
Sbjct: 86  NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH 143

Query: 124 WVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLN 183
            +SDL  L +++   YL +   K+  VT     +  L  L  L L+  Q+      P  +
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDIS--PLAS 197

Query: 184 FTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAI 243
            TSL       +      P  + N++ L +L + +++++      P   +  L  L++  
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGT 252

Query: 244 NGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
           N  S      I  +       L+ L       +    +  L++L +L L  N        
Sbjct: 253 NQISD-----INAVKDLTK--LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-M 304

Query: 304 NHFQNLTKLNSLYLSS 319
                LT L +L+LS 
Sbjct: 305 EVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 5e-10
 Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           SL  L       +  + +    + N++ L  L +    +           +DL  L +LS
Sbjct: 197 SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKI-----------TDLSPLANLS 243

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
              +L +   ++S +      V +L  L  L++ + Q++        N + L+ L L+ +
Sbjct: 244 QLTWLEIGTNQISDINA----VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNN 297

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
              ++  + +  ++ L TL L  + ++   P      +  +   D A  
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL---ASLSKMDSADFANQ 343

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 3e-25
 Identities = 62/325 (19%), Positives = 100/325 (30%), Gaps = 44/325 (13%)

Query: 257 LSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
             G     L               + Q       +  R         ++   +       
Sbjct: 19  FQGSTA--LRPYHDV---------LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI 376
           L ++   L      +         + +    L   FP      + +  +T+  A +   +
Sbjct: 68  LKATADLL------EDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL---------S 427
           PD         L  + L+ N     + +S+ SL  L  L +       EL         S
Sbjct: 120 PDTMQQF--AGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 428 TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG---EIKELTNAFSAC 484
                   L +L +       LP+ S+ NL NL SL I  + ++     I  L       
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAIHHLPK----- 230

Query: 485 NVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF 544
               LE LDL       N P   G    L+ L L + S L +LP  I  L+ L  L L  
Sbjct: 231 ----LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 545 NVMSRIISENIGQLSEPYMLDLYGN 569
            V    +   I QL    ++ +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 2e-24
 Identities = 59/297 (19%), Positives = 99/297 (33%), Gaps = 46/297 (15%)

Query: 305 HFQNLTKLNSLYLSSSN------------KSLVFTMRSDWIPPFSLR-----QMAINDCQ 347
           H  + +   +LY   S             +      R+ W   +        Q+     +
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 348 LGSAFPSWLK--TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSS 405
              A    L+  TQ     L L +  +    PD  + +    L  + +        +  +
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL--SHLQHMTIDAAGL-MELPDT 122

Query: 406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG-NRFLQLPS--------TSMGN 456
           +     L  L L  N L   L  S+   +RL  L I       +LP              
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 457 LCNLHSLDISYNHITG---EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCL 513
           L NL SL + +  I      I  L N         L++L + ++ L   L  ++ +L  L
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQN---------LKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 514 EYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
           E L L   + L + P   G  + L+ L L        +  +I +L++   LDL G  
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 50/407 (12%), Positives = 102/407 (25%), Gaps = 94/407 (23%)

Query: 160 LPSLVELHLSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLR 217
                 L+         +        +      + +  +   +      N +        
Sbjct: 11  SSGRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRT 64

Query: 218 SSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTI 277
              L  +              L+L                                    
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP----------------------------QF 96

Query: 278 SENIGQLAELVALNLYRNSWKGIITE--NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP 335
            +   +L+ L  + +        + E  +  Q    L +L L+                 
Sbjct: 97  PDQAFRLSHLQHMTIDAAG----LMELPDTMQQFAGLETLTLA----------------- 135

Query: 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN 395
                       L  A P+ + +   + +L++        +P+                 
Sbjct: 136 ---------RNPL-RALPASIASLNRLRELSIRACPELTELPEPLAST------------ 173

Query: 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG 455
                        L +L  LRL    +   L  S+ +   L +L I  +    L   ++ 
Sbjct: 174 -----DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-AIH 226

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
           +L  L  LD+        ++     F     + L+ L L        LP  +  L  LE 
Sbjct: 227 HLPKLEELDLRGCT---ALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQL-SEP 561
           L L     L  LP+ I  L     + +  ++ +++         +EP
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 1e-18
 Identities = 57/419 (13%), Positives = 97/419 (23%), Gaps = 103/419 (24%)

Query: 71  PEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIW 130
               +     + L    S+        +         D +  +                 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR------------- 51

Query: 131 LPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTSLS 188
             + ++ +     G  L    + L+     P  V L L +  L      P      + L 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDAT-QPGRVALELRSVPL---PQFPDQAFRLSHLQ 107

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPP--GKMCNLRRLDLAINGF 246
            + +        +P  +   + L TL L  + L       P     +  LR L       
Sbjct: 108 HMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR----ALPASIASLNRLRELS------ 156

Query: 247 SGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE--N 304
                     +  C    L  L     +   S     L  L +L L        I     
Sbjct: 157 ----------IRACPE--LTELPEPLASTDASGEHQGLVNLQSLRLEWTG----IRSLPA 200

Query: 305 HFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK 364
              NL  L SL +                           +  L SA         ++  
Sbjct: 201 SIANLQNLKSLKIR--------------------------NSPL-SALGP------AIHH 227

Query: 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG 424
           L                     KL  +DL                  L  L L   +   
Sbjct: 228 LP--------------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
            L   +   ++L  LD+ G   L    + +  L     + +  +      +    A  A
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 8e-15
 Identities = 46/263 (17%), Positives = 88/263 (33%), Gaps = 61/263 (23%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
            P+  + L  L+ + +  +     LP  +   + L+ L L+   L+              
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA------------- 141

Query: 130 WLPD----LSSSRYLHLEGM-KLSKV------TNWLQVVNELPSLVELHLSNCQLNFPQS 178
            LP     L+  R L +    +L+++      T+       L +L  L L    +   +S
Sbjct: 142 -LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---RS 197

Query: 179 LP--FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL 236
           LP    N  +L  L++  ++  S +   + ++  L  L+LR      + P    G    L
Sbjct: 198 LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPL 255

Query: 237 RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNS 296
           +RL                 L  C+N             T+  +I +L +L  L+L    
Sbjct: 256 KRLI----------------LKDCSNLL-----------TLPLDIHRLTQLEKLDLRGCV 288

Query: 297 WKGIITENHFQNLTKLNSLYLSS 319
               +       L     + +  
Sbjct: 289 NLSRLPSL-IAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 20/168 (11%)

Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492
            S    L   G+  L+     +      ++ D +  H         N          +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN---------PQIE 61

Query: 493 DLASNKLGGNLPDSLGNL--LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRI 550
                 L     D L +        L L     L   P     LSHL+ + +    +  +
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 551 ISENIGQLSEPYMLDLYGNSWEGVITE--KHFRNLSGLDYLTISSSNS 596
             + + Q +    L L  N     +        +L+ L  L+I +   
Sbjct: 120 -PDTMQQFAGLETLTLARNP----LRALPASIASLNRLRELSIRACPE 162

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 22/118 (18%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           +   ++ L KL+ LDL   +     PP  G  + L+ L L   +             +L+
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-------------NLL 267

Query: 130 WLPD----LSSSRYLHLEG-MKLSKVTNWLQVVNELPSLVELHLSNCQL-NFPQSLPF 181
            LP     L+    L L G + LS++ + +    +LP+   + +         Q  P 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILVPPHLQAQLDQHRPV 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (256), Expect = 1e-23
 Identities = 72/434 (16%), Positives = 132/434 (30%), Gaps = 88/434 (20%)

Query: 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRS 218
                ++H+     +       +   +  I+         ++P  L  +   +  LNL  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLND 78

Query: 219 SQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTIS 278
            Q+   I  +       +++L +  N                                + 
Sbjct: 79  LQIE-EIDTYAFAYAHTIQKLYMGFNAIR----------------------------YLP 109

Query: 279 ENIGQ-LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS 337
            ++ Q +  L  L L RN     +    F N  KL +L +S+                  
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN------------------ 150

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
                     L        +   S+  L LS+  ++         +        ++S N 
Sbjct: 151 --------NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH-----ANVSYNL 197

Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD--CSRLTALDIGGNRFLQLPSTSMG 455
                LS+L    ++  L    N++       +       LT L +  N         + 
Sbjct: 198 -----LSTLAIPIAVEELDASHNSI-----NVVRGPVNVELTILKLQHNNLTDTA--WLL 245

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
           N   L  +D+SYN +  +I    + F    +  LE L +++N+L   L      +  L+ 
Sbjct: 246 NYPGLVEVDLSYNELE-KIMY--HPFV--KMQRLERLYISNNRL-VALNLYGQPIPTLKV 299

Query: 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575
           L LS N  L  +  +      L  LYL  N +  +       L     L L  N W+   
Sbjct: 300 LDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCNS 355

Query: 576 TEKHFRNLSGLDYL 589
               FRN++     
Sbjct: 356 LRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 70/420 (16%), Positives = 124/420 (29%), Gaps = 89/420 (21%)

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWL--FNISTLVTLNLRSSQLSGSIPKFPPGKMCN 235
            +           ++  D     +        ++    +  ++S +   +P         
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENI-GQLAELVALNLYR 294
           +  L+L                                   I          +  L +  
Sbjct: 71  VELLNLNDLQIE----------------------------EIDTYAFAYAHTIQKLYMGF 102

Query: 295 NSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPS 354
           N+ +  +  + FQN+  L  L L   N     +     +P                    
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLER-ND---LSS----LPRGIFHNTP------------ 141

Query: 355 WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL--CSLPSL 412
                  +  L++SN  +     D F    S  L  + LS+N+     L+ +    +PSL
Sbjct: 142 ------KLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNR-----LTHVDLSLIPSL 188

Query: 413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
           +   +  N L     ++L     +  LD   N    +          L  L + +N++T 
Sbjct: 189 FHANVSYNLL-----STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD 240

Query: 473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIG 532
                T      N   L  +DL+ N+L   +      +  LE L +S N  L +L     
Sbjct: 241 -----TAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ 292

Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
            +  L+ L LS N +   +  N  Q      L L  NS    I          L  LT+S
Sbjct: 293 PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 67/399 (16%), Positives = 125/399 (31%), Gaps = 92/399 (23%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
           +L   K++    S+    LP  +  +   ++ L+L+   ++E  I               
Sbjct: 43  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE--IDTYA-------FAYA 92

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
            + + L++    +  +     V   +P L  L L    L+      F N   L+ L +S 
Sbjct: 93  HTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150

Query: 195 DNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG-EKEQ 252
            N   +I    F   ++L  L L S++L+          + +L   +++ N  S      
Sbjct: 151 -NNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNLLSTLAIPI 205

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
            ++ L   +NS +  +                 EL  L L  N+   +       N   L
Sbjct: 206 AVEELDASHNS-INVVRG-----------PVNVELTILKLQHNN---LTDTAWLLNYPGL 250

Query: 313 NSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI 372
             + LS +            I      +M                               
Sbjct: 251 VEVDLSYNELEK--------IMYHPFVKM------------------------------- 271

Query: 373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD 432
                        Q+L  + +SNN+    +      +P+L  L L  N+L   +  + P 
Sbjct: 272 -------------QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316

Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
             RL  L +  N  + L          L +L +S+N   
Sbjct: 317 FDRLENLYLDHNSIVTLKL---STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 29/246 (11%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            +T  N+ +             +++ +++L++ +       +     ++  L +G N + 
Sbjct: 49  IVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 424 GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
                   +   LT L +  N    LP     N   L +L +S N++   I++  + F  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED--DTFQ- 162

Query: 484 CNVSTLETLDLASNK----------------LGGNLPDSLGNLLCLEYLGLSENSFLGSL 527
              ++L+ L L+SN+                +  NL  +L   + +E L  S NS +  +
Sbjct: 163 -ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVV 220

Query: 528 PTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
              +     L  L L  N ++      +        +DL  N  E  I    F  +  L+
Sbjct: 221 RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE 275

Query: 588 YLTISS 593
            L IS+
Sbjct: 276 RLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 53/328 (16%)

Query: 268 LETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFT 327
           ++ Q  +         L     +    ++ + +       +  ++  L L+         
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLN--------- 77

Query: 328 MRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQK 387
                            D Q+            ++ KL +   AI    P  F  V    
Sbjct: 78  -----------------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV--PL 118

Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
           L+V+ L  N           + P L  L +  NNL      +    + L  L +  NR  
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 448 QLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL 507
            +       + +L   ++SYN ++  +              +E LD + N +   +   +
Sbjct: 179 HVDL---SLIPSLFHANVSYNLLS-TLAIPIA---------VEELDASHNSIN-VVRGPV 224

Query: 508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLY 567
              + L  L L  N+ L      + N   L  + LS+N + +I+     ++     L + 
Sbjct: 225 --NVELTILKLQHNN-LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 568 GNSWEGVITE--KHFRNLSGLDYLTISS 593
            N     +     + + +  L  L +S 
Sbjct: 281 NNR----LVALNLYGQPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 11/193 (5%)

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
           I S+L      Y + +                +    +    +   +LP+  + +   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 462 SLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521
            L+++   I  EI     AF+     T++ L +  N +    P    N+  L  L L  N
Sbjct: 73  LLNLNDLQIE-EIDT--YAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 522 SFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF 580
             L SLP  I  N   L  L +S N + RI  +     +    L L  N     +T    
Sbjct: 128 D-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDL 182

Query: 581 RNLSGLDYLTISS 593
             +  L +  +S 
Sbjct: 183 SLIPSLFHANVSY 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 42/349 (12%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
           S ++++LL+L++      +          +Q L + +  ++   +   +         ++
Sbjct: 67  SFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY--LPPHV-------FQNV 116

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
                L LE   LS +     + +  P L  L +SN  L   +   F   TSL  L+LS 
Sbjct: 117 PLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
            N  + +   L    +L   N+  + LS ++          +  LD + N         I
Sbjct: 175 -NRLTHVDLSLI--PSLFHANVSYNLLS-TLAIPI-----AVEELDASHNS--------I 217

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
             + G  N  L  L+ Q  N T +  +     LV ++L  N  +  I  + F  + +L  
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLER 276

Query: 315 LYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD 374
           LY+S++       +     P  +L+ + ++   L             +  L L + +I  
Sbjct: 277 LYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT 332

Query: 375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
                        L  + LS+N +    L +L    ++    +   +  
Sbjct: 333 LKLSTH-----HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 3/151 (1%)

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
           N   + P     +    +       HI  + +++   F    ++  + +   ++ +    
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 504 PDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
              L +   +E L L++   +  + T        ++ LY+ FN +  +       +    
Sbjct: 62  AALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
           +L L  N     +    F N   L  L++S+
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 2e-23
 Identities = 62/294 (21%), Positives = 107/294 (36%), Gaps = 22/294 (7%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNK-----SLVFTMRSDWIPPFSL 338
              L  L L  N     +    F NL  L +L L S N+       VFT         +L
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFT------GLSNL 106

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
            ++ I++ ++        +   ++  L + +  +       F G+ S  L  + L     
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--LEQLTLEKCNL 164

Query: 399 FGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC 458
                 +L  L  L  LRL   N++     S     RL  L+I    +L   + +     
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
           NL SL I++ ++T  +     A    ++  L  L+L+ N +       L  LL L+ + L
Sbjct: 225 NLTSLSITHCNLT-AVPY--LAVR--HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 519 SENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
                L  +       L++LR L +S N ++ +       +     L L  N  
Sbjct: 280 VGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 2e-22
 Identities = 70/364 (19%), Positives = 124/364 (34%), Gaps = 64/364 (17%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRSS 219
                L L   ++       F +F  L  LEL+ +N  S +    F N+  L TL LRS+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISE 279
           +L   IP      + NL +LD++ N         I  L       L  L++         
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISEN--------KIVILLDYMFQDLYNLKS--------- 132

Query: 280 NIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLR 339
                     L +  N     I+   F  L  L  L L   N +         IP  +L 
Sbjct: 133 ----------LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT--------SIPTEALS 173

Query: 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399
            +              L        L L +  I+      F  +   +L V+++S+  + 
Sbjct: 174 HL------------HGLIV------LRLRHLNINAIRDYSFKRL--YRLKVLEISHWPYL 213

Query: 400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCN 459
             +  +     +L  L +   NL+     ++     L  L++  N    +  + +  L  
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLS 519
           L  + +    +   ++    AF    ++ L  L+++ N+L         ++  LE L L 
Sbjct: 274 LQEIQLVGGQLA-VVEP--YAFR--GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 520 ENSF 523
            N  
Sbjct: 329 SNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 8/213 (3%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           I  +  ++DL  N+          S P L  L L  N +S     +  +   L  L +  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
           NR   +P      L NL  LDIS N I   + +    F   ++  L++L++  N L    
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLD--YMFQ--DLYNLKSLEVGDNDLVYIS 144

Query: 504 PDSLGNLLCLEYLGLSENSFLGSLPT-SIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
             +   L  LE L L + + L S+PT ++ +L  L  L L    ++ I   +  +L    
Sbjct: 145 HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           +L++    +   +T      L+ L  L+I+  N
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLN-LTSLSITHCN 235

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 7e-19
 Identities = 66/352 (18%), Positives = 125/352 (35%), Gaps = 60/352 (17%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            +LLDL ++    +      +  +L+ L+L+   +    +             +L + R 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGA-------FNNLFNLRT 84

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L L   +L  +     V   L +L +L +S  ++       F +  +L  LE+  DN   
Sbjct: 85  LGLRSNRLKLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLV 141

Query: 200 QIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
            I    F  +++L  L L    L+ SIP      +  L  L L     +  ++    +  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRD---YSFK 197

Query: 259 GCNNSTLETLETQRMNGT--ISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
                 L+ LE         ++ N      L +L++   +    +     ++L  L  L 
Sbjct: 198 RLYR--LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLN 254

Query: 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI 376
           LS +  S         I    L ++              L+       + L    ++   
Sbjct: 255 LSYNPIS--------TIEGSMLHEL------------LRLQE------IQLVGGQLAVVE 288

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSL-----CSLPSLYWLRLGGNNLS 423
           P  F G+    L V+++S N+     L++L      S+ +L  L L  N L+
Sbjct: 289 PYAFRGL--NYLRVLNVSGNQ-----LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 68/359 (18%), Positives = 124/359 (34%), Gaps = 58/359 (16%)

Query: 94  LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153
           +P  I   +  + LDL    +      K L   +    P L     L L    +S V   
Sbjct: 26  VPEGI--PTETRLLDLGKNRI------KTLNQDEFASFPHL---EELELNENIVSAVEP- 73

Query: 154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLV 212
               N L +L  L L + +L       F   ++L+ L++S +N    +  ++F ++  L 
Sbjct: 74  -GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLK 131

Query: 213 TLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQR 272
           +L +  + L   I       + +L +L L                       L ++ T+ 
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC-------------------NLTSIPTEA 171

Query: 273 MNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDW 332
           ++         L  L+ L L   +    I +  F+ L +L  L +S      + TM  + 
Sbjct: 172 LSH--------LHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWP--YLDTMTPNC 220

Query: 333 IPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVID 392
           +   +L  ++I  C L +     ++    +  L LS   IS         +   +L  I 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--LRLQEIQ 278

Query: 393 LSNNKFFGGILSSL-----CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
           L   +     L+ +       L  L  L + GN L+    +       L  L +  N  
Sbjct: 279 LVGGQ-----LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L  L  LD+SE+    +L     +L NL+ L++   +L        +       L  L 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY------ISHRAFSGLNSL- 154

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
               L LE   L+ +    + ++ L  L+ L L +  +N  +   F     L +LE+S+ 
Sbjct: 155 --EQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
            +   +         L +L++    L+ ++P      +  LR L+L+ N         I 
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP--------IS 261

Query: 256 TLSGCNNSTLETLETQRMNG----TISENI-GQLAELVALNLYRNSWKGIITENHFQNLT 310
           T+ G     L  L+  ++ G     +       L  L  LN+  N     + E+ F ++ 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320

Query: 311 KLNSLYLSS 319
            L +L L S
Sbjct: 321 NLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 75  YSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
             L  L +L L   + + +   +   L  L+ L++S+    +      L+  +L      
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL------ 226

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
                L +    L+ V      V  L  L  L+LS   ++  +         L  ++L  
Sbjct: 227 ---TSLSITHCNLTAVPY--LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
                  P     ++ L  LN+  +QL+ ++ +     + NL  L L  N
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE--------YQITKELWVSD- 127
           L +LK+L++S   +   + PN     NL  L +++ NL              + L +S  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 128 -LIWLP-----DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181
            +  +      +L   + + L G +L+ V         L  L  L++S  QL   +   F
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEP--YAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 182 LNFTSLSILELSYDNFN 198
            +  +L  L L  +   
Sbjct: 317 HSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (257), Expect = 3e-23
 Identities = 72/439 (16%), Positives = 134/439 (30%), Gaps = 88/439 (20%)

Query: 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRS 218
                ++H+     +       +   +  I+    ++   ++P  L  +   +  LNL  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLND 84

Query: 219 SQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTIS 278
            Q+   I  +       +++L +  N                                + 
Sbjct: 85  LQIE-EIDTYAFAYAHTIQKLYMGFNAIR----------------------------YLP 115

Query: 279 ENIGQ-LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS 337
            ++ Q +  L  L L RN     +    F N  KL +L +S                   
Sbjct: 116 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS------------------- 155

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
                  +  L        +   S+  L LS+  ++              L   ++S N 
Sbjct: 156 -------NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-----LFHANVSYNL 203

Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD--CSRLTALDIGGNRFLQLPSTSMG 455
                LS+L    ++  L    N++       +       LT L +  N         + 
Sbjct: 204 -----LSTLAIPIAVEELDASHNSI-----NVVRGPVNVELTILKLQHNNLTDTAW--LL 251

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
           N   L  +D+SYN +  +I    + F    +  LE L +++N+L   L      +  L+ 
Sbjct: 252 NYPGLVEVDLSYNELE-KIMY--HPFV--KMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI 575
           L LS N  L  +  +      L  LYL  N +  +    +        L L  N W+   
Sbjct: 306 LDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNS 361

Query: 576 TEKHFRNLSGLDYLTISSS 594
               FRN++          
Sbjct: 362 LRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 71/421 (16%), Positives = 125/421 (29%), Gaps = 89/421 (21%)

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNI--STLVTLNLRSSQLSGSIPKFPPGKMCN 235
            +           ++  D     +     +I  +    +  ++S +   +P         
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENI-GQLAELVALNLYR 294
           +  L+L                                   I          +  L +  
Sbjct: 77  VELLNLNDLQIE----------------------------EIDTYAFAYAHTIQKLYMGF 108

Query: 295 NSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPS 354
           N+ +  +  + FQN+  L  L L   N     +     +P                    
Sbjct: 109 NAIR-YLPPHVFQNVPLLTVLVLER-ND---LSS----LPRGIFHNTP------------ 147

Query: 355 WLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL--CSLPSL 412
                  +  L++SN  +     D F    S  L  + LS+N+     L+ +    +PSL
Sbjct: 148 ------KLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNR-----LTHVDLSLIPSL 194

Query: 413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
           +   +  N L     ++L     +  LD   N    +          L  L + +N++T 
Sbjct: 195 FHANVSYNLL-----STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD 246

Query: 473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIG 532
                T      N   L  +DL+ N+L   +      +  LE L +S N  L +L     
Sbjct: 247 -----TAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ 298

Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
            +  L+ L LS N +   +  N  Q      L L  NS    I          L  LT+S
Sbjct: 299 PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLS 353

Query: 593 S 593
            
Sbjct: 354 H 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 72/477 (15%), Positives = 145/477 (30%), Gaps = 73/477 (15%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +L   K++    S+   +    + +   ++ L+L+   ++E  I                
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYA-------FAYAH 99

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           + + L++    +  +     V   +P L  L L    L+      F N   L+ L +S  
Sbjct: 100 TIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN- 156

Query: 196 NFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG-EKEQF 253
           N   +I    F   ++L  L L S++L+          + +L   +++ N  S       
Sbjct: 157 NNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNLLSTLAIPIA 212

Query: 254 IQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
           ++ L   +NS +  +                 EL  L L  N+   +       N   L 
Sbjct: 213 VEELDASHNS-INVVRG-----------PVNVELTILKLQHNN---LTDTAWLLNYPGLV 257

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
            + LS +            I      +M                    + +L +SN  + 
Sbjct: 258 EVDLSYNELEK--------IMYHPFVKM------------------QRLERLYISNNRLV 291

Query: 374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC 433
             +  +   +    L V+DLS+N     +  +      L  L L  N++    +  L   
Sbjct: 292 A-LNLYGQPI--PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV---TLKLSTH 344

Query: 434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLD 493
             L  L +  N +      ++    N+    +       +I         C  S    LD
Sbjct: 345 HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

Query: 494 -----LASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
                +A   +   +  + G     + +   ++            L     L    N
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 56/320 (17%), Positives = 98/320 (30%), Gaps = 47/320 (14%)

Query: 277 ISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF 336
           I E            +  +S K  +  +  Q+   +  L LS                  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLS------------------ 42

Query: 337 SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNN 396
                      L     + L     +  L LS+  + +   D    +    L  +DL+NN
Sbjct: 43  --------GNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESL--STLRTLDLNNN 90

Query: 397 KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
                 +  L   PS+  L    NN+S     S         + +  N+   L     G 
Sbjct: 91  Y-----VQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
              +  LD+  N I      +  A  A +  TLE L+L  N +  ++   +     L+ L
Sbjct: 143 RSRVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
            LS N  L  +     + + +  + L  N +   I + +         DL GN +     
Sbjct: 197 DLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 577 EKHFRNLSGLDYLTISSSNS 596
              F     +  +   +   
Sbjct: 255 RDFFSKNQRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 47/264 (17%), Positives = 88/264 (33%), Gaps = 33/264 (12%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT--------K 121
           I E   +  + K+  +++SS    L     +  N++ LDLS   L +            +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 122 ELWVSD--LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL 179
            L +S   L    DL S     L  + L+   N++Q +   PS+  LH +N  ++    +
Sbjct: 62  LLNLSSNVLYETLDLESLS--TLRTLDLNN--NYVQELLVGPSIETLHAANNNIS---RV 114

Query: 180 PFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239
                     + L+ +             S +  L+L+ +++              L  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNG----TISENIGQLAELVALNLYRN 295
           +L  N        FI  + G        L+T  ++      +       A +  ++L  N
Sbjct: 175 NLQYN--------FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 296 SWKGIITENHFQNLTKLNSLYLSS 319
               I  E   +    L    L  
Sbjct: 225 KLVLI--EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 38/264 (14%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S   +K LDLS +  S +   ++   + L+ L+LS   L            + + L  LS
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----------YETLDLESLS 80

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           + R L L         N++Q +   PS+  LH +N  ++    +          + L+ +
Sbjct: 81  TLRTLDLNN-------NYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANN 130

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG-EKEQFI 254
                        S +  L+L+ +++              L  L+L  N     + +   
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 255 QTLSG---CNN---------STLETLETQRMNG----TISENIGQLAELVALNLYRNSWK 298
             L      +N          +   +    +       I + +     L   +L  N + 
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 299 GIITENHFQNLTKLNSLYLSSSNK 322
                + F    ++ ++   +  K
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKK 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 4e-23
 Identities = 91/491 (18%), Positives = 166/491 (33%), Gaps = 81/491 (16%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD-- 127
           +P    ++K       + S +    PP  G    +    L     ++     EL +++  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ---AHELELNNLG 82

Query: 128 LIWLPDLSSS-RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTS 186
           L  LP+L      L      L+++           SL  L + N  L     LP      
Sbjct: 83  LSSLPELPPHLESLVASCNSLTELP------ELPQSLKSLLVDNNNLKALSDLP----PL 132

Query: 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
           L  L +S  N   ++P+ L N S L  +++ ++ L   +P  PP    +L  +    N  
Sbjct: 133 LEYLGVSN-NQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQL 185

Query: 247 SGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF 306
                  +  L       L  +     N ++ +       L ++    N  + +      
Sbjct: 186 E-----ELPELQNLPF--LTAIYAD--NNSLKKLPDLPLSLESIVAGNNILEEL---PEL 233

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
           QNL  L ++Y  ++          D  P  SL  + + D  L +  P   +   S+  L 
Sbjct: 234 QNLPFLTTIYADNNL----LKTLPDLPP--SLEALNVRDNYL-TDLPELPQ---SLTFLD 283

Query: 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC-SLPSLYWLRLGGNNLSGE 425
           +S    S  + +         L  ++ S+N+     + SLC   PSL  L +  N L   
Sbjct: 284 VSENIFS-GLSELP-----PNLYYLNASSNE-----IRSLCDLPPSLEELNVSNNKL--- 329

Query: 426 LSTSLPD-CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT---GEIKELTNAF 481
               LP    RL  L    N   ++P        NL  L + YN +       + + +  
Sbjct: 330 --IELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 482 SACNVST-------LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNL 534
              +++        L+ L + +N L    PD   +   +E L ++    +     +    
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPL-REFPDIPES---VEDLRMNSERVVDPYEFAHETT 439

Query: 535 SHLRALYLSFN 545
             L       +
Sbjct: 440 DKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 6e-22
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 89/505 (17%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S   L+      S+ +  +P    N+ +      ++   +           ++  +  L 
Sbjct: 9   SNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA-VSRLR 66

Query: 136 SSRYLHLEGMKLSKVTNWLQVV-NELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELS 193
                    ++L+     L  +    P L  L  S   L   P+    L   SL +   +
Sbjct: 67  DCLDRQAHELELNN--LGLSSLPELPPHLESLVASCNSLTELPELPQSL--KSLLVDNNN 122

Query: 194 YDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQF 253
               +   P        L  L + ++QL   +P+        L+ +D+  N         
Sbjct: 123 LKALSDLPPL-------LEYLGVSNNQLE-KLPEL--QNSSFLKIIDVDNN--------S 164

Query: 254 IQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
           ++ L      +LE +            +  L  L A+    NS K +           L 
Sbjct: 165 LKKLPD-LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-----PDLPLSLE 218

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
           S+   ++    +  +++       L  +  ++  L    P       S+  L + +  ++
Sbjct: 219 SIVAGNNILEELPELQN----LPFLTTIYADNNLL-KTLPDLPP---SLEALNVRDNYLT 270

Query: 374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLP-SLYWLRLGGNNLSGELSTSLPD 432
             +P+       Q L+ +D+S N       S L  LP +LY+L    N +      SL D
Sbjct: 271 -DLPELP-----QSLTFLDVSENI-----FSGLSELPPNLYYLNASSNEI-----RSLCD 314

Query: 433 -CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLET 491
               L  L++  N+ ++LP+        L  L  S+NH+    +   N         L+ 
Sbjct: 315 LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELPQN---------LKQ 361

Query: 492 LDLASNKLGGNLPDSLGNL----------------LCLEYLGLSENSFLGSLPTSIGNLS 535
           L +  N L    PD   ++                  L+ L +  N  L   P    ++ 
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVE 419

Query: 536 HLRALYLSFNVMSRIISENIGQLSE 560
            LR              E   +L +
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLED 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 76/476 (15%), Positives = 139/476 (29%), Gaps = 106/476 (22%)

Query: 94  LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153
           + P   + + LQ       NL E                       + +E   +   T +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTE-----------------------MPVEAENVKSKTEY 39

Query: 154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVT 213
               +E            +      L          LEL+ +   S +P+   +   L +
Sbjct: 40  YNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN-NLGLSSLPELPPH---LES 95

Query: 214 LNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRM 273
           L    + L+  +P+  P  + +L   +  +   S                 LE L     
Sbjct: 96  LVASCNSLT-ELPEL-PQSLKSLLVDNNNLKALSD------------LPPLLEYLGVSNN 141

Query: 274 NGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWI 333
                  +   + L  +++  NS K +           L  +   ++          +  
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQ----LEELPELQ 192

Query: 334 PPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDL 393
               L  +  ++  L    P                                  L  I  
Sbjct: 193 NLPFLTAIYADNNSL-KKLPDLP-----------------------------LSLESIVA 222

Query: 394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNRFLQLPST 452
            NN      L  L +LP L  +    N L      +LPD    L AL++  N    LP  
Sbjct: 223 GNNIL--EELPELQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDNYLTDLPE- 274

Query: 453 SMGNLCNLHSLDISYNHITGEIKELTNAFSACN--------VSTLETLDLASNKLGGNLP 504
              +L  L   +  ++ ++     L    ++ N          +LE L++++NKL   LP
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELP 333

Query: 505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSE 560
                   LE L  S N  L  +P    N   L+ L++ +N +     +    + +
Sbjct: 334 ALPPR---LERLIASFNH-LAEVPELPQN---LKQLHVEYNPLRE-FPDIPESVED 381

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 79/420 (18%), Positives = 146/420 (34%), Gaps = 79/420 (18%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEY-QITKELWVSD--LIWLP 132
               L+ L  S +S +  LP    +L +L   + + + L +   + + L VS+  L  LP
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 147

Query: 133 DLSSS---RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP-FLNFTSLS 188
           +L +S   + + ++   L K+ +        PSL  +   N QL   + LP   N   L+
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQL---EELPELQNLPFLT 198

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
            +     N   ++P    +   L ++   ++ L   +P+     +  L  +    N    
Sbjct: 199 AIYADN-NSLKKLPDLPLS---LESIVAGNNILE-ELPEL--QNLPFLTTIYADNN---- 247

Query: 249 EKEQFIQTLSGCNNSTLETLETQRMNGT-ISENIGQLAELVALNLYRNSWKGIITENHFQ 307
                ++TL     S LE L  +    T + E    L  L       +    +       
Sbjct: 248 ----LLKTLPDLPPS-LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP----- 297

Query: 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTL 367
           NL  LN+    SSN+        D  P  SL ++ +++ +L    P+       + +L  
Sbjct: 298 NLYYLNA----SSNE---IRSLCDLPP--SLEELNVSNNKL-IELPALPP---RLERLIA 344

Query: 368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKF--FGGILSSLCSL-------------PSL 412
           S   ++  +P+       Q L  + +  N    F  I  S+  L              +L
Sbjct: 345 SFNHLA-EVPELP-----QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398

Query: 413 YWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
             L +  N L        PD    +  L +   R +     +      L      ++H  
Sbjct: 399 KQLHVETNPL-----REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 29/181 (16%)

Query: 407 CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466
            S   L       +NL+ E+     +    T      + + +      G    +    + 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS 526
                            C       L+L +  L  +LP+   +L   E L  S NS L  
Sbjct: 67  ----------------DCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNS-LTE 105

Query: 527 LPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGL 586
           LP    +L  L     +       +S+    L     L +  N  E +   ++   L  +
Sbjct: 106 LPELPQSLKSLLVDNNNLKA----LSDLPPLLEY---LGVSNNQLEKLPELQNSSFLKII 158

Query: 587 D 587
           D
Sbjct: 159 D 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.2 bits (247), Expect = 5e-22
 Identities = 90/510 (17%), Positives = 168/510 (32%), Gaps = 70/510 (13%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD-----L 134
             +L++S++  S +   +I +LS L+ L +S+  ++               L        
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--------------LDISVFKFN 68

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELS 193
               YL L   KL K++      +   +L  L LS    +  P    F N + L  L LS
Sbjct: 69  QELEYLDLSHNKLVKIS-----CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 194 YDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQF 253
             +        + +++    L +          K  P  + +     L I   + ++  F
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 254 IQTLSGCNNSTLETLETQR----------MNGTISENIGQLAELVALNLYRNSWKGIITE 303
           I  +S    + LE    +           ++             + LN    +W   I  
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 304 NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF 363
                 T +    +S+         R       SL+ ++I+                   
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 364 KLTLSNAAISD--TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
            + + N  +S    +       IS     +D SNN     +  +   L  L  L L  N 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAF 481
           L       L   + +T                   + +L  LDIS N ++ +  E     
Sbjct: 360 L-----KELSKIAEMTT-----------------QMKSLQQLDISQNSVSYD--EKKGDC 395

Query: 482 SACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALY 541
           S     +L +L+++SN L   +   L     ++ L L  N  + S+P  +  L  L+ L 
Sbjct: 396 S--WTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNK-IKSIPKQVVKLEALQELN 450

Query: 542 LSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
           ++ N +  +      +L+    + L+ N W
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 79/512 (15%), Positives = 155/512 (30%), Gaps = 107/512 (20%)

Query: 82  LLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLH 141
           L+D S++    + P ++        L++S   + E      LW SD++ L  L   R L 
Sbjct: 4   LVDRSKNGLIHV-PKDLS--QKTTILNISQNYISE------LWTSDILSLSKL---RILI 51

Query: 142 LEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQI 201
           +   ++  +     V      L  L LS+ +L     +      +L  L+LS++ F++  
Sbjct: 52  ISHNRIQYLDI--SVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALP 106

Query: 202 PQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCN 261
               F                        G M  L+ L L+           I  L+   
Sbjct: 107 ICKEF------------------------GNMSQLKFLGLSTTHLEKSSVLPIAHLN--- 139

Query: 262 NSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN 321
               + L          E+   L +    +L+                    +       
Sbjct: 140 --ISKVLLVLGETYGEKEDPEGLQDFNTESLHIV----------------FPTNKEFHFI 181

Query: 322 KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFW 381
             +     ++         +  N C    +  + L+T   +  LTL+N   +        
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS----- 236

Query: 382 GVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI 441
               + L ++  +   +F           S+  ++L G     +   S      L+   +
Sbjct: 237 --FIRILQLVWHTTVWYF-----------SISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG 501
             + F    S       N++  + + +        + +      +S    LD ++N L  
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-----MVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 502 NLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP 561
            + ++ G+L  LE L L  N  L  L       + +++L                     
Sbjct: 339 TVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQ-------------------- 377

Query: 562 YMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
             LD+  NS      +        L  L +SS
Sbjct: 378 -QLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 65/387 (16%), Positives = 140/387 (36%), Gaps = 21/387 (5%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           PI +   ++ +LK L LS +         I +L+  + L +  +   E +  + L   + 
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS 188
             L  +  +       + +S  T     ++ +  ++E +  +  L+    L      S  
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 189 ILE--LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
            L    +  N   +I Q L   +T+   ++ + +L G    F            L+I+  
Sbjct: 226 TLNNIETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQ-LDFRDFDYSGTSLKALSIHQV 283

Query: 247 SGEKEQFIQTL--SGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITEN 304
             +   F Q+      +N  ++                +++  + L+   N     + EN
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 305 HFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ-ASVF 363
              +LT+L +L L  +    +  +        SL+Q+ I+   +         +   S+ 
Sbjct: 344 -CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCS----LPSLYWLRLGG 419
            L +S+  ++DTI       +  ++ V+DL +NK     + S+      L +L  L +  
Sbjct: 403 SLNMSSNILTDTIFR----CLPPRIKVLDLHSNK-----IKSIPKQVVKLEALQELNVAS 453

Query: 420 NNLSGELSTSLPDCSRLTALDIGGNRF 446
           N L           + L  + +  N +
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 421 NLSGELSTSLPDC--SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEI 474
           + S      +P     + T L+I  N   +L ++ + +L  L  L IS+N I        
Sbjct: 6   DRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65

Query: 475 KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTS--IG 532
           K             LE LDL+ NKL         NL   ++L LS N+   +LP     G
Sbjct: 66  KFNQE---------LEYLDLSHNKLVKISCHPTVNL---KHLDLSFNA-FDALPICKEFG 112

Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
           N+S L+ L LS   + +     I  L+   +L + G ++      +  ++ +      + 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 593 SSNSSLVFNIRH 604
            +N    F +  
Sbjct: 173 PTNKEFHFILDV 184

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 68/341 (19%), Positives = 119/341 (34%), Gaps = 70/341 (20%)

Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN-GTISENIGQLAELVALNLY 293
               L++  +G        + TL  C  + + TL     N  ++     +L  L    + 
Sbjct: 41  GNAVLNVGESG--------LTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTL---EVS 89

Query: 294 RNSWKGIITE--NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA 351
            N     +T        L +L+      ++   +         P  L ++ I   QL S 
Sbjct: 90  GNQ----LTSLPVLPPGLLELSIFSNPLTHLPAL---------PSGLCKLWIFGNQLTS- 135

Query: 352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLP 410
            P        + +L++S+  ++ ++P         +L  +   NN+     L+SL     
Sbjct: 136 LPVLP---PGLQELSVSDNQLA-SLPALPS-----ELCKLWAYNNQ-----LTSLPMLPS 181

Query: 411 SLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
            L  L +  N L      SLP   S L  L    NR   LP+        L  L +S N 
Sbjct: 182 GLQELSVSDNQL-----ASLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNR 232

Query: 470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT 529
           +T      +          L+ L ++ N+L  +LP     L     L +  N  L  LP 
Sbjct: 233 LTSLPVLPSE---------LKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQ-LTRLPE 278

Query: 530 SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
           S+ +LS    + L  N +S    + + +++       Y   
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITS---APGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 78/405 (19%), Positives = 135/405 (33%), Gaps = 89/405 (21%)

Query: 169 SNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKF 228
           S  +    Q +        ++L +  ++  + +P  L     + TL +  + L+ S+P  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVG-ESGLTTLPDCLPA--HITTLVIPDNNLT-SLPAL 79

Query: 229 PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELV 288
           PP     LR L+++ N  +                            ++      L EL 
Sbjct: 80  PP----ELRTLEVSGNQLT----------------------------SLPVLPPGLLELS 107

Query: 289 ALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQL 348
             +        +         + L  L++  +      T      P   L++++++D QL
Sbjct: 108 IFSNPLTHLPAL--------PSGLCKLWIFGNQ----LTSLPVLPP--GLQELSVSDNQL 153

Query: 349 GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-C 407
            S  P+     + + KL   N  ++ ++P          L  + +S+N+     L+SL  
Sbjct: 154 AS-LPALP---SELCKLWAYNNQLT-SLPMLP-----SGLQELSVSDNQ-----LASLPT 198

Query: 408 SLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466
               LY L    N L     TSLP   S L  L + GNR   LP         L  L +S
Sbjct: 199 LPSELYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVS 249

Query: 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS 526
            N +T      +          L +L +  N+L   LP+SL +L     + L  N  L  
Sbjct: 250 GNRLTSLPMLPSG---------LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP-LSE 298

Query: 527 LPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
                     + +       + R          E   L L    W
Sbjct: 299 RTLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 132/445 (29%)

Query: 101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD--LSSSRYLHLEGMKLSKVTNWLQVVN 158
            +    L++    L                LPD   +    L +    L+ +        
Sbjct: 39  NNGNAVLNVGESGLTT--------------LPDCLPAHITTLVIPDNNLTSLP------A 78

Query: 159 ELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLR 217
             P L  L +S  QL + P   P      LSI      +  +           L  L + 
Sbjct: 79  LPPELRTLEVSGNQLTSLPVLPP--GLLELSIFSNPLTHLPALPSG-------LCKLWIF 129

Query: 218 SSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTI 277
            +QL+ S+P  PP     L+ L ++ N  +                            ++
Sbjct: 130 GNQLT-SLPVLPP----GLQELSVSDNQLA----------------------------SL 156

Query: 278 SENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS 337
                +L +L A N                 LT L  L                   P  
Sbjct: 157 PALPSELCKLWAYNN---------------QLTSLPML-------------------PSG 182

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
           L++++++D QL ++ P+     + ++KL   N  ++ ++P          L  + +S N+
Sbjct: 183 LQELSVSDNQL-ASLPTLP---SELYKLWAYNNRLT-SLPALP-----SGLKELIVSGNR 232

Query: 398 FFGGILSSL-CSLPSLYWLRLGGNNLSGELSTSLPD-CSRLTALDIGGNRFLQLPSTSMG 455
                L+SL      L  L + GN L     TSLP   S L +L +  N+  +LP  S+ 
Sbjct: 233 -----LTSLPVLPSELKELMVSGNRL-----TSLPMLPSGLLSLSVYRNQLTRLPE-SLI 281

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
           +L +  ++++  N ++    +            + +    S  +     D  G     E 
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALRE--------ITSAPGYSGPI--IRFDMAGASAPRET 331

Query: 516 LGLSENSFLGSLPTSIGNLSHLRAL 540
             L   +    +P   G  +     
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 45/251 (17%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT--KELWVSD--LIWL 131
              +L+ L++S +  +  LP     L  L        +L     +   +LW+    L  L
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSL 136

Query: 132 PDLSSS-RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSIL 190
           P L    + L +   +L+ +            L +L   N QL    SLP +  + L  L
Sbjct: 137 PVLPPGLQELSVSDNQLASLP------ALPSELCKLWAYNNQL---TSLP-MLPSGLQEL 186

Query: 191 ELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK 250
            +S DN  + +P     +  L   N R + L        P     L+ L ++ N      
Sbjct: 187 SVS-DNQLASLPTLPSELYKLWAYNNRLTSL--------PALPSGLKELIVSGN------ 231

Query: 251 EQFIQTLSGCNNSTLETLETQRMN-GTISENIGQLAELVALNLYRNSWKGIITE--NHFQ 307
              + +L     S L+ L        ++      L     L++YRN     +T       
Sbjct: 232 --RLTSLP-VLPSELKELMVSGNRLTSLPMLPSGLLS---LSVYRNQ----LTRLPESLI 281

Query: 308 NLTKLNSLYLS 318
           +L+   ++ L 
Sbjct: 282 HLSSETTVNLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 52/310 (16%), Positives = 98/310 (31%), Gaps = 47/310 (15%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNL--------------SNLQYLDLSYQNLK 115
           +P     L +L +     +     LP  +  L                LQ L +S   L 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154

Query: 116 E--YQIT--KELWVSD--LIWLPDLSSS-RYLHLEGMKLSKVTNWL-------------- 154
                 +   +LW  +  L  LP L S  + L +   +L+ +                  
Sbjct: 155 SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT 214

Query: 155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTL 214
            +      L EL +S  +L    SLP L  + L  L +S  N  + +P      S L++L
Sbjct: 215 SLPALPSGLKELIVSGNRLT---SLPVL-PSELKELMVS-GNRLTSLPML---PSGLLSL 266

Query: 215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN 274
           ++  +QL+  +P+     + +   ++L  N  S    Q ++ ++     +   +      
Sbjct: 267 SVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 275 GTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL-NSLYLSSSNKSLVFTMRSDWI 333
            +       L    A  L           + +    +  N+   S     L  T      
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKD 384

Query: 334 PPFSLRQMAI 343
             F  +  + 
Sbjct: 385 AGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 38/173 (21%)

Query: 416 RLGGNNLSGELSTSLPDC--SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE 473
               +     +   +  C  +    L++G +    LP        ++ +L I  N++T  
Sbjct: 20  PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSL 76

Query: 474 IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF---------- 523
                          L TL+++ N+L  +LP     LL L                    
Sbjct: 77  PALPPE---------LRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

Query: 524 ------LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
                 L SLP     L     L +S N ++  +     +L +   L  Y N 
Sbjct: 127 WIFGNQLTSLPVLPPGLQE---LSVSDNQLAS-LPALPSELCK---LWAYNNQ 172

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 47/320 (14%)

Query: 277 ISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF 336
           I E            +  +S K  +  +  Q+   +  L LS                  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSG----------------- 43

Query: 337 SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNN 396
                      L     + L     +  L LS+  + +T+      +    L  +DL+NN
Sbjct: 44  ---------NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--STLRTLDLNNN 90

Query: 397 KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
                 +  L   PS+  L    NN+S     S         + +  N+   L     G 
Sbjct: 91  Y-----VQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
              +  LD+  N I      +  A  A +  TLE L+L  N +  ++   +     L+ L
Sbjct: 143 RSRVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
            LS N  L  +     + + +  + L  N +  I  + +         DL GN +     
Sbjct: 197 DLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 577 EKHFRNLSGLDYLTISSSNS 596
              F     +  +   +   
Sbjct: 255 RDFFSKNQRVQTVAKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 56/414 (13%), Positives = 121/414 (29%), Gaps = 36/414 (8%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT--------K 121
           I E   +  + K+  +++SS    L     +  N++ LDLS   L +            +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 122 ELWVSD--LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL 179
            L +S   L    DL S     L  + L+   N++Q +   PS+  LH +N  ++    +
Sbjct: 62  LLNLSSNVLYETLDLESLS--TLRTLDLNN--NYVQELLVGPSIETLHAANNNIS---RV 114

Query: 180 PFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239
                     + L+ +             S +  L+L+ +++              L  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNG----TISENIGQLAELVALNLYRN 295
           +L  N        FI  + G        L+T  ++      +       A +  ++L  N
Sbjct: 175 NLQYN--------FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 296 SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
               I  E   +    L    L   N     T+R  +     ++ +A    +  +     
Sbjct: 225 KLVLI--EKALRFSQNLEHFDL-RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 356 LKTQASVFKLT-LSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYW 414
             T  ++          +     D    +  ++ +++    ++    +     +      
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQRE 340

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
           +          +            L+       +  S        L        
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 65/437 (14%), Positives = 125/437 (28%), Gaps = 59/437 (13%)

Query: 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSS 219
                   +++  L    +    +  ++  L+LS +  +      L   + L  LNL S+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN-GTIS 278
            L           +  LR LDL  N        ++Q L    +  +ETL     N   +S
Sbjct: 69  VLY-ETLDL--ESLSTLRTLDLNNN--------YVQELLVGPS--IETLHAANNNISRVS 115

Query: 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
            + GQ      + L  N    +  +      +++  L L  +    V             
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTV------------- 159

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
                        F     +  ++  L L    I D      +     KL  +DLS+NK 
Sbjct: 160 ------------NFAELAASSDTLEHLNLQYNFIYDVKGQVVF----AKLKTLDLSSNKL 203

Query: 399 FGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC 458
              +     S   + W+ L  N L   +  +L     L   D+ GN      +       
Sbjct: 204 -AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSK 260

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
           N     ++   +     +          +        +             L+ L+    
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEE-----ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 519 S----ENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGV 574
           +    + S    L     N +  R +         +I +   +      L+    + +  
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 575 ITEKHFRNLSGLDYLTI 591
           ++    R  + LD    
Sbjct: 376 VS-NGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 9e-10
 Identities = 58/416 (13%), Positives = 131/416 (31%), Gaps = 31/416 (7%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT-----KELW 124
             +   SL  L+ LDL+ +         +    +++ L  +  N+     +     K ++
Sbjct: 73  TLDLE-SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 125 VSD--LIWLPD-----LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177
           +++  +  L D      S  +YL L+  ++  V N+ ++     +L  L+L    +   +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237
                    L  L+LS  N  + +     + + +  ++LR+++L   I K       NL 
Sbjct: 186 GQVVF--AKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLE 240

Query: 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSW 297
             DL  NGF     +   +     N  ++T+  Q +     +N  +       +      
Sbjct: 241 HFDLRGNGFHCGTLRDFFS----KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 298 KGIITENHFQNLTKLNS--LYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
           +  +       L  L      L S   S    +  +       R++     Q  +     
Sbjct: 297 E-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWL 415
              + +   L     A+ + + +          ++                  L  L  +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 416 RLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
                 +  E  +   +  R   +       L   +  +  L     L ++  + T
Sbjct: 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 29/255 (11%), Positives = 76/255 (29%), Gaps = 19/255 (7%)

Query: 69  PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
              E   S   L+ L+L  +     +   +   + L+ LDLS   L    +  E      
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF--MGPEFQ---- 211

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS 188
                 +   ++ L   KL  +      +    +L    L     +   +L      +  
Sbjct: 212 ----SAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQR 263

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
           +  ++         Q     +     +  +      +P     ++  L+R + A+    G
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQG 322

Query: 249 EKEQFIQTLSGCNNSTLE-TLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307
            + + ++          E     ++    I +   +    + L   + +    ++ N  +
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS-NGRR 381

Query: 308 NLTKLNSLYLSSSNK 322
              +L+     +  +
Sbjct: 382 AHAELDGTLQQAVGQ 396

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 85/506 (16%), Positives = 172/506 (33%), Gaps = 72/506 (14%)

Query: 95  PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL 154
           P ++      + L LS  N     I++ L + D+ +L +L   R L L   ++  +    
Sbjct: 47  PKDL--PPRTKALSLSQ-N----SISE-LRMPDISFLSEL---RVLRLSHNRIRSLDF-- 93

Query: 155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVT 213
            V      L  L +S+ +L   Q++      SL  L+LS+++F+       F N++ L  
Sbjct: 94  HVFLFNQDLEYLDVSHNRL---QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 214 LNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRM 273
           L L +++              +   LDL      G + + +Q  +      L        
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLF 209

Query: 274 NGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL------YLSSSNKSLVFT 327
           +  ++ ++  L  L   N+  N             LT+  +L      ++ ++ K  V  
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 328 MRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQK 387
            +  W  P  +  + I +  +        + + +  +  L +                  
Sbjct: 270 FQFFWPRP--VEYLNIYNLTITE---RIDREEFTYSETALKS------------------ 306

Query: 388 LSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
           L +  + N  F     +       +    L  ++         P  S  T L+   N F 
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 448 QLPSTSMGNLCNLHSLDISYNHIT---------GEIKELTNAFSACN------------- 485
                    L  L +L +  N +            +  L     + N             
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 486 VSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
             ++  L+L+SN L G++   L     ++ L L  N  + S+P  + +L  L+ L ++ N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNR-IMSIPKDVTHLQALQELNVASN 483

Query: 546 VMSRIISENIGQLSEPYMLDLYGNSW 571
            +  +      +L+    + L+ N W
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 9e-20
 Identities = 76/484 (15%), Positives = 162/484 (33%), Gaps = 64/484 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD- 133
            L +L++L LS +     L  ++     +L+YLD+S+  L+               +   
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN--------------ISCC 118

Query: 134 -LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILEL 192
            ++S R+L L       +    +    L  L  L LS  +    + L  L    L +  +
Sbjct: 119 PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKF---RQLDLLPVAHLHLSCI 174

Query: 193 SYDNFNSQIPQWLFNISTLVTLNLRSSQLS--GSIPKFPPGKMCNLRRLDLAINGFSGEK 250
             D  +  I         +    +                  +  L  L L+    + E 
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 251 EQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLT 310
            Q + T           L     +   +          ++ L++  W   +   +  NLT
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWK-------CSVKLFQFFWPRPVEYLNIYNLT 287

Query: 311 KLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNA 370
                 ++       FT     +    +  +              +  + ++  L++S+ 
Sbjct: 288 ------ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 371 AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL 430
                +            + ++ + N F   +     +L  L  L L  N L      + 
Sbjct: 342 PFIHMVCP----PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-----KNF 392

Query: 431 PDCS----RLTALDIGGNRFLQLPSTSMGNLC----NLHSLDISYNHITGEIKELTNAFS 482
              +     +++L+        L S +    C    ++  L++S N +TG +        
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR------ 446

Query: 483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALY 541
            C    ++ LDL +N++  ++P  + +L  L+ L ++ N  L S+P  +   L+ L+ ++
Sbjct: 447 -CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIW 503

Query: 542 LSFN 545
           L  N
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 59/396 (14%), Positives = 123/396 (31%), Gaps = 72/396 (18%)

Query: 34  DCGNFSIRCTEREREALLKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGM 93
           D  ++ I+  E E   +     L       S +   +   V +L  L+L ++  +  +  
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 94  ----LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK 149
                   +     L  + L +         K        W   +    YL++  + +++
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF---QFFWPRPVE---YLNIYNLTITE 290

Query: 150 VTNWLQVVNE---LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF 206
             +  +       L SL+  H+ N    F +   +  F  ++I  LS  +          
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 207 NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLE 266
           + S+   LN   +  +             L+RL               QTL    N  L+
Sbjct: 351 SPSSFTFLNFTQNVFT----DSVFQGCSTLKRL---------------QTLILQRNG-LK 390

Query: 267 TLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN-KSLV 325
                     ++     ++ L  L++  NS      +        +  L LSS+     V
Sbjct: 391 NFFK------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 326 FTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVIS 385
           F      +PP  ++ + +++ ++  + P        V  L                    
Sbjct: 445 F----RCLPP-KVKVLDLHNNRI-MSIP------KDVTHLQ------------------- 473

Query: 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
             L  +++++N+           L SL ++ L  N 
Sbjct: 474 -ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 23/199 (11%)

Query: 428 TSLPDC--SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAF 481
           T +P     R  AL +  N   +L    +  L  L  L +S+N I            +  
Sbjct: 44  THVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-- 101

Query: 482 SACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTS--IGNLSHLRA 539
                  LE LD++ N+L  N+      +  L +L LS N F   LP     GNL+ L  
Sbjct: 102 -------LEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTF 150

Query: 540 LYLSFNVMSRIISENIGQLSEPYM-LDLYGNSWEGVITEK-HFRNLSGLDYLTISSSNSS 597
           L LS     ++    +  L    + LDL     +G  TE     N + L  +   +S  S
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 598 LVFNIRHDWIAPFNLYTIR 616
           +  N+  + +    L  I+
Sbjct: 211 VQVNMSVNALGHLQLSNIK 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S      L+ +++ F+  +      L  LQ L L    LK +       V+ +       
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-----VALM-----TK 400

Query: 136 SSRYLHLEGMKLSKVTNWL--QVVNELPSLVELHLSNCQLNFPQSLPFLNFT-SLSILEL 192
           +   L    + L+ + +    +      S++ L+LS+  L       F      + +L+L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRCLPPKVKVLDL 457

Query: 193 SYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
             +   S IP+ + ++  L  LN+ S+QL  S+P     ++ +L+ + L  N +
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 85/438 (19%), Positives = 145/438 (33%), Gaps = 74/438 (16%)

Query: 128 LIWLPDLSSS-RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLN 183
           L  +P+L +   Y+ L    ++++       + L  L  L +          +    F  
Sbjct: 22  LHQVPELPAHVNYVDLSLNSIAELNE--TSFSRLQDLQFLKVEQQTP--GLVIRNNTFRG 77

Query: 184 FTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRSSQL-SGSIPKFPPGKMCNLRRLDL 241
            +SL IL+L Y N   Q+    F  ++ L  L L    L    +       + +L  L L
Sbjct: 78  LSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 242 AINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGII 301
             N         I+ +                  +   N   +     L+L  N  K  I
Sbjct: 137 RDNN--------IKKIQ---------------PASFFLN---MRRFHVLDLTFNKVK-SI 169

Query: 302 TENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS 361
            E    N    +   L  S+ +L                  +N+  LG           S
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQD----------------MNEYWLGWEKCGNPFKNTS 213

Query: 362 VFKLTLSNAAISDTIPDWFWGVIS-QKLSVIDLSNNKFFGGILSSLC------------S 408
           +  L LS     +++   F+  I+  K+  + LSN+   G                    
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
              +    L  + +   L +     + L  L +  N   ++   +   L +L  L++S N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 469 HITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP 528
            +   I      F   N+  LE LDL+ N +      S   L  L+ L L  N  L S+P
Sbjct: 334 FLG-SIDS--RMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVP 387

Query: 529 TSI-GNLSHLRALYLSFN 545
             I   L+ L+ ++L  N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 88.6 bits (220), Expect = 8e-19
 Identities = 86/452 (19%), Positives = 150/452 (33%), Gaps = 90/452 (19%)

Query: 83  LDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHL 142
           +DLS +S + +   +   L +LQ+L +  Q          +  +    L  L     L L
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQ-----TPGLVIRNNTFRGLSSL---IILKL 86

Query: 143 EGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILELSYDNFNS 199
           +  +  ++       N L +L  L L+ C L+    L    F   TSL +L L  +N   
Sbjct: 87  DYNQFLQLET--GAFNGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 200 QIPQWLF-NISTLVTLNLRSSQLSGSIPK--FPPGKMCNLRRLDLAINGFSGEKEQFIQT 256
             P   F N+     L+L  +++  SI +      +  +   L L+              
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSI------------ 190

Query: 257 LSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
                  TL+ +    +      N  +   +  L+L  N +K  + +  F  +       
Sbjct: 191 -------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 317 LSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI 376
           L  SN   + +                                      +  +    D  
Sbjct: 244 LILSNSYNMGS--------------------------------------SFGHTNFKDPD 265

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD---- 432
              F G+ +  +   DLS +K F  + S       L  L L  N +       + D    
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-----NKIDDNAFW 320

Query: 433 -CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLET 491
             + L  L++  N    + S    NL  L  LD+SYNHI   + +   +F    +  L+ 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGD--QSFL--GLPNLKE 375

Query: 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523
           L L +N+L          L  L+ + L  N +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 50/332 (15%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN-KSL---VFTMRSDWIPPFSLR 339
           L +L  L + + +   +I  N F+ L+ L  L L  +    L    F          +L 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN------GLANLE 106

Query: 340 QMAINDCQLGSAF--PSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
            + +  C L  A    ++ K   S+  L L +  I    P  F+  +  +  V+DL+ NK
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFHVLDLTFNK 165

Query: 398 FF---GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSM 454
                   L +         LRL    L                 D+           + 
Sbjct: 166 VKSICEEDLLNFQGK-HFTLLRLSSITL----------------QDMNEYWLGWEKCGNP 208

Query: 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK-----LGGNLPDSLGN 509
               ++ +LD+S N     + +    F A   + +++L L+++       G        N
Sbjct: 209 FKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 510 LLC-------LEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEP 561
                     ++   LS++  + +L  S+  + + L  L L+ N +++I       L+  
Sbjct: 267 FTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 562 YMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
             L+L  N     I  + F NL  L+ L +S 
Sbjct: 326 LKLNLSQNFLGS-IDSRMFENLDKLEVLDLSY 356

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 15/228 (6%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSRLTALDIG 442
           +   ++ +DLS N       +S   L  L +L++        +   +    S L  L + 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN 502
            N+FLQL + +   L NL  L ++  ++ G +    N F    +++LE L L  N +   
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS-GNFFK--PLTSLEMLVLRDNNIKKI 144

Query: 503 LPDSL-GNLLCLEYLGLSENSF----------LGSLPTSIGNLSHLRALYLSFNVMSRII 551
            P S   N+     L L+ N                  ++  LS +    ++   +    
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV 599
             N  + +    LDL GN ++  + ++ F  ++G    ++  SNS  +
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 61/379 (16%), Positives = 118/379 (31%), Gaps = 80/379 (21%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
            L  L +L L  + F   L       L+NL+ L L+  NL    ++             L
Sbjct: 77  GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-------FKPL 128

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSN------CQLNF----PQSLPFLNF 184
           +S   L L    + K+         +     L L+       C+ +      +    L  
Sbjct: 129 TSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
           +S+++ +++      +     F  +++ TL+L  +    S+ K     +   +   L ++
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 245 GFSGEKEQF----IQTLSGCNNSTLETLETQRMN------GTISENI-GQLAELVALNLY 293
                   F     +         LE    +  +        + +++     +L  L L 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 294 RNSWKGIITENHFQNLTKLNSLYLSSSN-KSL---VFTMRSDWIPPFSLRQMAINDCQLG 349
           +N     I +N F  LT L  L LS +   S+   +F    + +    L  + ++   + 
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF----ENLD--KLEVLDLSYNHIR 360

Query: 350 SAFPSWLKTQASVF-KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-- 406
           +            F  L                      L  + L  N+     L S+  
Sbjct: 361 A-------LGDQSFLGLP--------------------NLKELALDTNQ-----LKSVPD 388

Query: 407 ---CSLPSLYWLRLGGNNL 422
                L SL  + L  N  
Sbjct: 389 GIFDRLTSLQKIWLHTNPW 407

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 9/211 (4%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           IS    +++L  N+     ++S   L  L  L+L  N++      +    + L  L++  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS-NKLGGN 502
           NR   +P+ +   L  L  L +  N I   I     AF+     +L  LDL    +L   
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRI--PSLRRLDLGELKRLSYI 176

Query: 503 LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
              +   L  L YL L+  + L  +P  +  L  L  L LS N +S I   +   L    
Sbjct: 177 SEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
            L +  +  + VI    F NL  L  + ++ 
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394
             + R + +++ Q+     +  K    +  L LS   I       F G+    L+ ++L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL--ANLNTLELF 120

Query: 395 NNKFFGGILSSL-----CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG-NRFLQ 448
           +N+     L+++       L  L  L L  N +    S +      L  LD+G   R   
Sbjct: 121 DNR-----LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 449 LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG 508
           +   +   L NL  L+++  ++  EI  LT       +  L+ LDL+ N L    P S  
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP------LIKLDELDLSGNHLSAIRPGSFQ 228

Query: 509 NLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG 568
            L+ L+ L + ++        +  NL  L  + L+ N ++ +  +    L     + L+ 
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 569 NSW 571
           N W
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 61/243 (25%), Positives = 93/243 (38%), Gaps = 23/243 (9%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            +LL+L E+    +   +  +L +L+ L LS  +++   I              L++   
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGA-------FNGLANLNT 116

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L L   +L+ + N       L  L EL L N  +    S  F    SL  L+L      S
Sbjct: 117 LELFDNRLTTIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 200 QIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
            I +  F  +S L  LNL    L   IP   P  +  L  LDL+ N  S  +    Q L 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIKLDELDLSGNHLSAIRPGSFQGL- 230

Query: 259 GCNNSTLETLETQRMN-GTISEN-IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
                 L+ L   +     I  N    L  LV +NL  N+   ++  + F  L  L  ++
Sbjct: 231 ----MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 317 LSS 319
           L  
Sbjct: 286 LHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 15/216 (6%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF-SLRQMA 342
           L  L  L L RN  +  I    F  L  LN+L L   N+  + T+ +        L+++ 
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD-NR--LTTIPNGAFVYLSKLKELW 142

Query: 343 INDCQLGSAFPSWLKTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNKFFGG 401
           + +  + S          S+ +L L     +S      F G+    L  ++L+       
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL--SNLRYLNLAMCNL--R 198

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
            + +L  L  L  L L GN+LS     S      L  L +  ++   +   +  NL +L 
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 462 SLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497
            +++++N++T  +    + F+   +  LE + L  N
Sbjct: 259 EINLAHNNLT-LLPH--DLFT--PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 12/164 (7%)

Query: 434 SRLTALDIGGNRFLQLPSTSMGNL-CNLHSLDISYNHITGEIKELTNAFSACNVSTLETL 492
           ++ + +        ++P      +  N   L++  N I   IK   N+F   ++  LE L
Sbjct: 43  NQFSKVICVRKNLREVPD----GISTNTRLLNLHENQIQ-IIKV--NSFK--HLRHLEIL 93

Query: 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRII 551
            L+ N +      +   L  L  L L +N  L ++P      LS L+ L+L  N +  I 
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIP 152

Query: 552 SENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
           S    ++     LDL        I+E  F  LS L YL ++  N
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 20/213 (9%)

Query: 365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-----CSLPSLYWLRLGG 419
           L L   +I       F G+    L+ ++L +N      L+ +       L  L  L L  
Sbjct: 104 LQLGRNSIRQIEVGAFNGL--ASLNTLELFDNW-----LTVIPSGAFEYLSKLRELWLRN 156

Query: 420 NNLSGELSTSLPDCSRLTALDIGG-NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
           N +    S +      L  LD+G   +   +   +   L NL  L++   +I  ++  LT
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLT 215

Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR 538
                  +  LE L+++ N      P S   L  L+ L +  +        +   L+ L 
Sbjct: 216 P------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
            L L+ N +S +  +    L     L L+ N W
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 9/211 (4%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           I      ++L  N        +   L  L  L+LG N++      +    + L  L++  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS-NKLGGN 502
           N    +PS +   L  L  L +  N I   I     AF+     +L  LDL    KL   
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS--YAFNRV--PSLMRLDLGELKKLEYI 187

Query: 503 LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
              +   L  L+YL L   + +  +P  +  L  L  L +S N    I   +   LS   
Sbjct: 188 SEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
            L +  +    +I    F  L+ L  L ++ 
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
            +  +L L  NN+    + +      L  L +G N   Q+   +   L +L++L++  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT 529
           +T  I     AF    +S L  L L +N +      +   +  L  L L E   L  +  
Sbjct: 135 LT-VIPS--GAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 530 SI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDY 588
                L +L+ L L    +  +   N+  L     L++ GN +   I    F  LS L  
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK 246

Query: 589 LTISSSN 595
           L + +S 
Sbjct: 247 LWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            + L+L E++   +      +L +L+ L L   ++++  I              L+S   
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGA-------FNGLASLNT 127

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L L    L+ + +       L  L EL L N  +    S  F    SL  L+L       
Sbjct: 128 LELFDNWLTVIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 200 QIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
            I +  F  +  L  LNL    +   +P   P  +  L  L+++ N F   +      L 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHFPEIRPGSFHGL- 241

Query: 259 GCNNSTLETLETQRMN-GTISEN-IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
               S+L+ L         I  N    LA LV LNL  N+    +  + F  L  L  L+
Sbjct: 242 ----SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELH 296

Query: 317 LSS 319
           L  
Sbjct: 297 LHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 15/216 (6%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF-SLRQMA 342
           L  L  L L RNS +  I    F  L  LN+L L  +  +++    S        LR++ 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVI---PSGAFEYLSKLRELW 153

Query: 343 INDCQLGSAFPSWLKTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNKFFGG 401
           + +  + S          S+ +L L     +       F G+    L  ++L        
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL--FNLKYLNLGMCNIKD- 210

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
            + +L  L  L  L + GN+       S    S L  L +  ++   +   +   L +L 
Sbjct: 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 462 SLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497
            L++++N+++  +    + F+   +  L  L L  N
Sbjct: 270 ELNLAHNNLS-SLPH--DLFT--PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 63/273 (23%), Positives = 95/273 (34%), Gaps = 56/273 (20%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRSS 219
            +   L+L    +   Q+  F +   L +L+L   N   QI    F  +++L TL L  +
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDN 133

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ--TLSGCNNSTLETLETQRMN--G 275
            L+  IP      +  LR L L  N         I     +   +  L  L+   +    
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-----SIPSYAFNRVPS--LMRLDLGELKKLE 185

Query: 276 TISENI-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIP 334
            ISE     L  L  LNL   +   I    +   L  L  L +S ++           I 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCN---IKDMPNLTPLVGLEELEMSGNHFP--------EIR 234

Query: 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394
           P S   +            S LK      KL + N+ +S    + F G+    L  ++L+
Sbjct: 235 PGSFHGL------------SSLK------KLWVMNSQVSLIERNAFDGL--ASLVELNLA 274

Query: 395 NNKFFGGILSSL-----CSLPSLYWLRLGGNNL 422
           +N      LSSL       L  L  L L  N  
Sbjct: 275 HNN-----LSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 77  LKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           L KL+ L L  +     +P      + +L  LDL        ++     +S+      L 
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK----KLEY---ISEGA-FEGLF 196

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           + +YL+L    +  + N       L  L EL +S       +   F   +SL  L +   
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN- 251

Query: 196 NFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
           +  S I +  F  +++LV LNL  + LS S+P      +  L  L L  N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 45/279 (16%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP------FSL 338
            +   L+L  N     I +  F+NL  L++L L ++  S         I P        L
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK--------ISPGAFAPLVKL 102

Query: 339 RQMAINDCQLGS----AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394
            ++ ++  QL         + L+      +L +    I+      F G+   ++ V++L 
Sbjct: 103 ERLYLSKNQLKELPEKMPKT-LQ------ELRVHENEITKVRKSVFNGL--NQMIVVELG 153

Query: 395 NNKFFGGILSS--LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPST 452
            N      + +     +  L ++R+   N++  +   LP    LT L + GN+  ++ + 
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAA 210

Query: 453 SMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLC 512
           S+  L NL  L +S+N I+  +     + +  N   L  L L +NKL   +P  L +   
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDN--GSLA--NTPHLRELHLNNNKL-VKVPGGLADHKY 264

Query: 513 LEYLGLSEN--SFLGS----LPTSIGNLSHLRALYLSFN 545
           ++ + L  N  S +GS     P      +    + L  N
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 51/275 (18%), Positives = 99/275 (36%), Gaps = 33/275 (12%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN-KSLVFTMRSDWIPPFSLRQMA 342
           L  L  L L  N     I+   F  L KL  LYLS +  K L   M      P +L+++ 
Sbjct: 75  LKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKM------PKTLQELR 127

Query: 343 INDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI--PDWFWGVISQKLSVIDLSNNKFFG 400
           +++ ++     S       +  + L    +  +      F G+    LS I +++     
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTN--- 182

Query: 401 GILSSL--CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC 458
             ++++     PSL  L L GN ++   + SL   + L  L +  N    + + S+ N  
Sbjct: 183 --ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG------NLPDSLGNLLC 512
           +L  L ++ N +     ++    +  +   ++ + L +N +          P        
Sbjct: 241 HLRELHLNNNKLV----KVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 513 LEYLGLSENSF-LGSLPTSI-GNLSHLRALYLSFN 545
              + L  N      +  S    +    A+ L   
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 42/248 (16%), Positives = 84/248 (33%), Gaps = 39/248 (15%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
            K L+ L + E+  + +       L+ +  ++L    LK   I              +  
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------AFQGMKK 172

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
             Y+ +    ++ +   L      PSL ELHL   ++    +       +L+ L LS+ N
Sbjct: 173 LSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-N 226

Query: 197 FNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
             S +      N   L  L+L +++L   +P         ++ + L  N  S      I 
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKYIQVVYLHNNNIS-----AIG 279

Query: 256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI-ITENHFQNLTKLNS 314
           +   C                      + A    ++L+ N  +   I  + F+ +    +
Sbjct: 280 SNDFCPPGYNT----------------KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 315 LYLSSSNK 322
           + L  + K
Sbjct: 324 VQL-GNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 63/353 (17%), Positives = 111/353 (31%), Gaps = 89/353 (25%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRSS 219
           P    L L N ++   +   F N  +L  L L   N  S+I    F  +  L  L L  +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKN 110

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISE 279
           QL     + P      L+ L +  N  +                             + +
Sbjct: 111 QLK----ELPEKMPKTLQELRVHENEIT----------------------------KVRK 138

Query: 280 NI-GQLAELVALNLYRNSWKGI-ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS 337
           ++   L +++ + L  N  K   I    FQ + KL+ + ++ +N +         IP   
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--------TIPQ-- 188

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
                          PS L        L L    I+        G+    L+ + LS N 
Sbjct: 189 ------------GLPPS-LTE------LHLDGNKITKVDAASLKGL--NNLAKLGLSFNS 227

Query: 398 FFGGILSSLC-----SLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPST 452
                +S++      + P L  L L  N L  ++   L D   +  + +  N    + S 
Sbjct: 228 -----ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 453 SMG------NLCNLHSLDISYNHIT-GEIKELTNAFSACNVSTLETLDLASNK 498
                       +   + +  N +   EI+   + F    V     + L + K
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFR--CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 56/328 (17%), Positives = 104/328 (31%), Gaps = 66/328 (20%)

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
             +  L L+  K++++ +       L +L  L L N +++      F     L  L LS 
Sbjct: 52  PDTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS- 108

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
            N   ++P+ +    TL  L +  ++++  + K     +  +  ++L  N         I
Sbjct: 109 KNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK---SSGI 162

Query: 255 Q--TLSGCNNSTLETLETQRMNGTISEN------IGQLAELVALNLYRNSWKGIITENHF 306
           +     G     L  +        I++        G    L  L+L  N     +     
Sbjct: 163 ENGAFQGMKK--LSYI-------RIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASL 212

Query: 307 QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT 366
           + L  L  L LS ++ S         +   SL                 L+       L 
Sbjct: 213 KGLNNLAKLGLSFNSIS--------AVDNGSLANT------------PHLRE------LH 246

Query: 367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNKF-------FGGILSSLCSLPSLYWLRLGG 419
           L+N  +   +P        + + V+ L NN         F           S   + L  
Sbjct: 247 LNNNKLV-KVPGGLADH--KYIQVVYLHNNNISAIGSNDFCP-PGYNTKKASYSGVSLFS 302

Query: 420 NNLS-GELSTSLPDC-SRLTALDIGGNR 445
           N +   E+  S   C     A+ +G  +
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 14/186 (7%)

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
           P    L L  N ++        +   L  L +  N+  ++   +   L  L  L +S N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL-- 527
           +  E+ E           TL+ L +  N++          L  +  + L  N    S   
Sbjct: 112 LK-ELPE--KMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 528 PTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
             +   +  L  + ++   ++ I       L+E   L L GN     +     + L+ L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKIT-KVDAASLKGLNNLA 219

Query: 588 YLTISS 593
            L +S 
Sbjct: 220 KLGLSF 225

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 432 DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLET 491
            C  L  +        ++P        +   LD+  N IT EIK+    F   N+  L T
Sbjct: 30  QCH-LRVVQCSDLGLEKVPK---DLPPDTALLDLQNNKIT-EIKD--GDFK--NLKNLHT 80

Query: 492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
           L L +NK+    P +   L+ LE L LS+N  L  LP  +     L+ L +  N ++++ 
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVR 137

Query: 552 SENIGQLSEPYMLDLYGNS-WEGVITEKHFRNLSGLDYLTISSSN 595
                 L++  +++L  N      I    F+ +  L Y+ I+ +N
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 54/351 (15%), Positives = 98/351 (27%), Gaps = 85/351 (24%)

Query: 80  LKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSR 138
             LLDL  +  +  +      NL NL  L L    + +  I+             L    
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK--ISPGA-------FAPLVKLE 103

Query: 139 YLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNF- 197
            L+L   +L ++   +       +L EL +   ++   +   F     + ++EL  +   
Sbjct: 104 RLYLSKNQLKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 198 NSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQT 256
           +S I    F  +  L  + +  + ++      P G   +L  L L  N  +         
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKIT--------- 205

Query: 257 LSGCNNSTLETLETQRMNGTISENI-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315
                               +       L  L  L L  NS    +      N   L  L
Sbjct: 206 -------------------KVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLREL 245

Query: 316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDT 375
           +L++                           +L    P  L     +  + L N  IS  
Sbjct: 246 HLNN--------------------------NKL-VKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 376 IPDWFWGVIS----QKLSVIDLSNNKFFGGILSS--LCSLPSLYWLRLGGN 420
             + F            S + L +N      +       +     ++LG  
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 72/499 (14%), Positives = 140/499 (28%), Gaps = 123/499 (24%)

Query: 78  KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSS 137
                   +          +   L+ L  LD    ++           +D+  +  L+  
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-----------TDMTGIEKLTGL 66

Query: 138 RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNF 197
             L      ++ +      +++  +L  L   + +L    +L     T L+ L    +  
Sbjct: 67  TKLICTSNNITTLD-----LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNK- 117

Query: 198 NSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTL 257
                                      + K    +   L  L+ A N         +  +
Sbjct: 118 ---------------------------LTKLDVSQNPLLTYLNCARNT--------LTEI 142

Query: 258 SGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL 317
              +N+ L  L+          ++    +L  L+   N     ITE        LN L  
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNC 198

Query: 318 SSSN-KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI 376
            ++N   L             L  +  +  +L         T+  V  LT          
Sbjct: 199 DTNNITKLDLNQ------NIQLTFLDCSSNKL---------TEIDVTPLT---------- 233

Query: 377 PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL 436
                     +L+  D S N         + +L  L  L     +L       L   ++L
Sbjct: 234 ----------QLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQL 277

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG-EIKELTNAFSACNVSTLETLDLA 495
                 G R  ++    + +   L+ LD     IT  ++ +            L  L L 
Sbjct: 278 IYFQAEGCR--KIKELDVTHNTQLYLLDCQAAGITELDLSQNPK---------LVYLYLN 326

Query: 496 SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI 555
           + +L   L   + +   L+ L       +     S+G +  L   + +      +  E +
Sbjct: 327 NTEL-TELD--VSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTITMPKETL 381

Query: 556 GQLSEPY-----MLDLYGN 569
              S        +LD +GN
Sbjct: 382 TNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 77/472 (16%), Positives = 153/472 (32%), Gaps = 89/472 (18%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT-----KELWVSD---- 127
           L  L  LD   SS + M    I  L+ L  L  +  N+    ++       L        
Sbjct: 41  LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT 98

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSL 187
            + +  L+   YL+ +  KL+K+      V++ P L  L+ +   L     +   + T L
Sbjct: 99  NLDVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLT---EIDVSHNTQL 150

Query: 188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFS 247
           + L+   +   +++   +   + L TL+   ++++    +    +   L RL+   N   
Sbjct: 151 TELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT----ELDVSQNKLLNRLNCDTNN-- 202

Query: 248 GEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ 307
                 I  L    N  L  L+    N     ++  L +L   +   N     +TE    
Sbjct: 203 ------ITKLDLNQNIQLTFLDCSS-NKLTEIDVTPLTQLTYFDCSVNP----LTELDVS 251

Query: 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTL 367
            L+KL +L+   ++   +     D      L       C+                +L +
Sbjct: 252 TLSKLTTLHCIQTDLLEI-----DLTHNTQLIYFQAEGCRKIK-------------ELDV 293

Query: 368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL--CSLPSLYWLRLGGNNLSGE 425
           ++               + +L ++D          ++ L     P L +L L    L   
Sbjct: 294 TH---------------NTQLYLLDCQAAG-----ITELDLSQNPKLVYLYLNNTEL--- 330

Query: 426 LSTSLP--DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA 483
             T L     ++L +L             S+G +  L++   +        KE     S 
Sbjct: 331 --TELDVSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

Query: 484 CNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLS 535
               + + LD   N +  N+    G +       ++  +     P      +
Sbjct: 387 TIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFT 436

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/429 (12%), Positives = 120/429 (27%), Gaps = 81/429 (18%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ 220
            +      +  ++    ++      +L+ L+    +        +  ++ L  L   S+ 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 221 LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISEN 280
           ++         +  NL  L    N         +  L     + L  L     N     +
Sbjct: 76  IT----TLDLSQNTNLTYLACDSNK--------LTNLDVTPLTKLTYLN-CDTNKLTKLD 122

Query: 281 IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQ 340
           + Q   L  LN  RN+    +TE    + T+L  L    + K     +         L  
Sbjct: 123 VSQNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNKKITKLDVTP----QTQLTT 174

Query: 341 MAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG 400
           +  +  ++                L +S                ++ L+ ++   N    
Sbjct: 175 LDCSFNKITE--------------LDVSQ---------------NKLLNRLNCDTNN--- 202

Query: 401 GILSSL--CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC 458
             ++ L       L +L    N L+      +   ++LT  D   N   +L    +  L 
Sbjct: 203 --ITKLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTELD---VSTLS 254

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
            L +L      +              + + L        +    L   + +   L  L  
Sbjct: 255 KLTTLHCIQTDLL--------EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDC 304

Query: 519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
                +  L   +     L  LYL+   ++ +   ++   ++   L       +   +  
Sbjct: 305 QAAG-ITELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSSVG 358

Query: 579 HFRNLSGLD 587
               L+   
Sbjct: 359 KIPALNNNF 367

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 39/256 (15%), Positives = 84/256 (32%), Gaps = 40/256 (15%)

Query: 74  VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT-----KELWVS-- 126
           V  L KL  L+   +  + +   ++     L YL+ +   L E  ++      EL     
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 127 ---DLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLN 183
                + +   +    L     K++++      V++   L  L+     +     L    
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNI---TKLDLNQ 210

Query: 184 FTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAI 243
              L+ L+ S  N  ++I   +  ++ L   +   + L+    +     +  L  L    
Sbjct: 211 NIQLTFLDCS-SNKLTEID--VTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQ 263

Query: 244 NGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
                     +  +   +N+ L   + +        ++    +L  L+         ITE
Sbjct: 264 TD--------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG----ITE 311

Query: 304 NHFQNLTKLNSLYLSS 319
                  KL  LYL++
Sbjct: 312 LDLSQNPKLVYLYLNN 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 35/222 (15%)

Query: 386 QKLSVIDLSNNKFFGGILSSL--CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
            KL+ ++   NK     L+ L     P L +L    N L+      +   ++LT LD   
Sbjct: 106 TKLTYLNCDTNK-----LTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHL 157

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITG-EIKELTNAFSACNVSTLETLDLASNKLGGN 502
           N+ +     +      L +LD S+N IT  ++ +            L  L+  +N +   
Sbjct: 158 NKKITKLDVT--PQTQLTTLDCSFNKITELDVSQNKL---------LNRLNCDTNNIT-K 205

Query: 503 LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
           L   L   + L +L  S N  L  +   +  L+ L     S N ++ +    + +L+   
Sbjct: 206 LD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTT-- 258

Query: 563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRH 604
            L          + E    + + L Y            ++ H
Sbjct: 259 -LHCIQTD----LLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 36/260 (13%), Positives = 80/260 (30%), Gaps = 34/260 (13%)

Query: 63  LSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQIT-- 120
               K      V    +L  LD S +  + +   ++     L  L+    N+ +  +   
Sbjct: 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQN 211

Query: 121 ---KELWVSD--LIWLP--DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL 173
                L  S   L  +    L+   Y       L+++      V+ L  L  LH     L
Sbjct: 212 IQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDL 266

Query: 174 NFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM 233
                +   + T L   +        ++   + + + L  L+ +++ ++    +    + 
Sbjct: 267 L---EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT----ELDLSQN 317

Query: 234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLY 293
             L  L L            +  L   +N+ L++L     +     ++G++  L      
Sbjct: 318 PKLVYLYLNNTE--------LTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEA 369

Query: 294 RNSWKGIITENHFQNLTKLN 313
                 +  E    N   + 
Sbjct: 370 EGQTITMPKETLTNNSLTIA 389

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 4e-17
 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 41/265 (15%)

Query: 301 ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA 360
              ++F    K     L   N++   ++  + +      ++ +N   L S+ P  L  Q 
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRLNL-SSLPDNLPPQ- 81

Query: 361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGG 419
            +  L ++  A+  ++P+         L  +D  +N+     LS+L     SL  L +  
Sbjct: 82  -ITVLEITQNALI-SLPELP-----ASLEYLDACDNR-----LSTLPELPASLKHLDVDN 129

Query: 420 NNLSGELSTSLPDC-SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
           N L     T LP+  + L  ++   N+   LP        +L  L +  N +T   +   
Sbjct: 130 NQL-----TMLPELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPELPE 180

Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE----YLGLSENSFLGSLPTSIGNL 534
           +         LE LD+++N L  +LP         E    +    EN  +  +P +I +L
Sbjct: 181 S---------LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSL 229

Query: 535 SHLRALYLSFNVMSRIISENIGQLS 559
                + L  N +S  I E++ Q +
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 53/288 (18%), Positives = 99/288 (34%), Gaps = 41/288 (14%)

Query: 71  PEFVYSLKKLKLLDLSESSFSGMLP-PNIGNLSNLQYLDLSYQNLKEY-----QITKELW 124
            ++  +  K +   L   + +  +       ++    L L+  NL             L 
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLE 86

Query: 125 VSD--LIWLPDLSSS-RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF 181
           ++   LI LP+L +S  YL     +LS +           SL  L + N QL     LP 
Sbjct: 87  ITQNALISLPELPASLEYLDACDNRLSTLP------ELPASLKHLDVDNNQL---TMLPE 137

Query: 182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDL 241
           L    L  +     N  + +P+   +   L  L++R++QL+  +P+ P     +L  LD+
Sbjct: 138 L-PALLEYINADN-NQLTMLPELPTS---LEVLSVRNNQLT-FLPELPE----SLEALDV 187

Query: 242 AINGFSGEKEQFIQTLSGCNNSTLETLETQRMNG----TISENIGQLAELVALNLYRNSW 297
           + N         +  +   N+ + ET    R        I ENI  L     + L  N  
Sbjct: 188 STNLLES-----LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP- 241

Query: 298 KGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND 345
              ++    ++L++  +       +                   A+  
Sbjct: 242 ---LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 51/379 (13%), Positives = 113/379 (29%), Gaps = 70/379 (18%)

Query: 179 LPFLNFTSLSILELSYDNFNSQIPQWLFNI-STLVTLNLRSSQLSGSIPKFPPGKMCNLR 237
           LP  N  SLS       N  S      F+         L     + ++       +    
Sbjct: 5   LPINNNFSLSQNSFY--NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSW 297
            L L     S                            ++ +N+    ++  L + +N+ 
Sbjct: 63  ELQLNRLNLS----------------------------SLPDNLPP--QITVLEITQNA- 91

Query: 298 KGIITE--NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
              +        +L  L++      N+    +   +     SL+ + +++ QL +  P  
Sbjct: 92  ---LISLPELPASLEYLDA----CDNR---LSTLPELPA--SLKHLDVDNNQL-TMLPEL 138

Query: 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLPSLYW 414
               A +  +   N  ++  +P+         L V+ + NN+     L+ L     SL  
Sbjct: 139 P---ALLEYINADNNQLT-MLPELP-----TSLEVLSVRNNQ-----LTFLPELPESLEA 184

Query: 415 LRLGGNNLSGELSTSLPDCSRLT----ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
           L +  N L   L                     NR   +P  ++ +L    ++ +  N +
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPL 242

Query: 471 TGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTS 530
           +  I+E  +  +A        +  + +    N            +   ++ S +  +  +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 531 IGNLSHLRALYLSFNVMSR 549
             +  H        + +S 
Sbjct: 303 FEHEEHANTFSAFLDRLSD 321

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 10/210 (4%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
           ++ L    IS      F     + L+++ L +N       ++   L  L  L L  N   
Sbjct: 36  RIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 424 GELS-TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFS 482
             +   +     RL  L +      +L       L  L  L +  N +   + +  + F 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD--DTFR 150

Query: 483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALY 541
             ++  L  L L  N++      +   L  L+ L L +N  +  +      +L  L  LY
Sbjct: 151 --DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207

Query: 542 LSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
           L  N +S + +E +  L     L L  N W
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 7/187 (3%)

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
            +   + L GN +S   + S   C  LT L +  N   ++ + +   L  L  LD+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT 529
               +      F    +  L TL L    L    P     L  L+YL L +N+ L +LP 
Sbjct: 92  QLRSVDP--ATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPD 146

Query: 530 SI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDY 588
               +L +L  L+L  N +S +       L     L L+ N     +    FR+L  L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMT 205

Query: 589 LTISSSN 595
           L + ++N
Sbjct: 206 LYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 15/171 (8%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
           + + L +L L  +  +  +       L+ L+ LDLS  N +   +    +         L
Sbjct: 54  ACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD-NAQLRSVDPATFH-------GL 104

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
                LHL+   L ++     +   L +L  L+L +  L       F +  +L+ L L  
Sbjct: 105 GRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 195 DNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
            N  S +P+  F  + +L  L L  ++++  +       +  L  L L  N
Sbjct: 163 -NRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 33/225 (14%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMA-- 342
           A    + L+ N     +    F+    L  L+L S+  +         I   +   +A  
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA--------RIDAAAFTGLALL 82

Query: 343 -----INDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
                 ++ QL S  P+       +  L L    + +  P  F G+ +  L  + L +N 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA--LQYLYLQDNA 140

Query: 398 FFGGILSSL-----CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPST 452
                L +L       L +L  L L GN +S     +      L  L +  NR   +   
Sbjct: 141 -----LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 453 SMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497
           +  +L  L +L +  N+++  +     A +   +  L+ L L  N
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPT--EALA--PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 50/228 (21%), Positives = 73/228 (32%), Gaps = 34/228 (14%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            + + L  +  S +   +     NL  L L    L    I              L+    
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAA-------AFTGLALLEQ 84

Query: 140 LHLEG-MKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILELSYD 195
           L L    +L  V       + L  L  LHL  C L   Q L    F    +L  L L  D
Sbjct: 85  LDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRCGL---QELGPGLFRGLAALQYLYLQ-D 138

Query: 196 NFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
           N    +P   F ++  L  L L  +++S S+P+     + +L RL L  N         +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR--------V 189

Query: 255 QTLSGCNNSTLETLETQRMNG----TISENI-GQLAELVALNLYRNSW 297
             +       L  L T  +       +       L  L  L L  N W
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 49/243 (20%), Positives = 79/243 (32%), Gaps = 35/243 (14%)

Query: 228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN-GTISENI-GQLA 285
            P G     +R+ L  N  S       +         L  L         I       LA
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRN-----LTILWLHSNVLARIDAAAFTGLA 80

Query: 286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIND 345
            L  L+L  N+    +    F  L +L++L+L                            
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD--------------------------R 114

Query: 346 CQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSS 405
           C L    P   +  A++  L L + A+     D F  + +  L+ + L  N+       +
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--LTHLFLHGNRISSVPERA 172

Query: 406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465
              L SL  L L  N ++     +  D  RL  L +  N    LP+ ++  L  L  L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 466 SYN 468
           + N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 15/144 (10%)

Query: 77  LKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           L +L  L L        L P +   L+ LQYL L    L+                 DL 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD---------TFRDLG 153

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           +  +L L G ++S V    +    L SL  L L   ++       F +   L  L L   
Sbjct: 154 NLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-A 210

Query: 196 NFNSQIPQWLF-NISTLVTLNLRS 218
           N  S +P      +  L  L L  
Sbjct: 211 NNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 68/268 (25%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ 220
            +   + L   +++   +  F    +L+IL L  +            ++ L  L+L  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 221 LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISEN 280
              S+       +  L  L L   G                               +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ----------------------------ELGPG 123

Query: 281 I-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLR 339
           +   LA L  L L  N+ +  + ++ F++L  L  L+L   N       R   +P  + R
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL-HGN-------RISSVPERAFR 174

Query: 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399
            +                   S+ +L L    ++   P  F  +   +L  + L  N   
Sbjct: 175 GL------------------HSLDRLLLHQNRVAHVHPHAFRDL--GRLMTLYLFANN-- 212

Query: 400 GGILSSL-----CSLPSLYWLRLGGNNL 422
              LS+L       L +L +LRL  N  
Sbjct: 213 ---LSALPTEALAPLRALQYLRLNDNPW 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL-PDCSRLTALDIGGNR 445
            L  +DLS N     + S+   L  L  L    +NL      S+      L  LDI    
Sbjct: 79  SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD 505
                +     L +L  L ++ N          + F+   +  L  LDL+  +L    P 
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFT--ELRNLTFLDLSQCQLEQLSPT 193

Query: 506 SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP-YML 564
           +  +L  L+ L +S N+F          L+ L+ L  S N +     + +         L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 565 DLYGNSW 571
           +L  N +
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 22/247 (8%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
           +    L L  N  +  +    F  LT+L  L LSS+  S             SL+ + ++
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNNKFFGGIL 403
              +     S       +  L   ++ +        F  +  + L  +D+S+        
Sbjct: 87  FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTH-----T 138

Query: 404 SSL-----CSLPSLYWLRLGGNN-LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
                     L SL  L++ GN+     L     +   LT LD+   +  QL  T+  +L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 458 CNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLC-LEYL 516
            +L  L++S+N+    +      +    +++L+ LD + N +  +    L +    L +L
Sbjct: 199 SSLQVLNMSHNNFF-SLDT--FPYK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 517 GLSENSF 523
            L++N F
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 11/188 (5%)

Query: 407 CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466
           CS   +         L+  + T +P  S  T L++  N+   LP      L  L  L +S
Sbjct: 7   CSGTEIR---CNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS 526
            N ++      + +      ++L+ LDL+ N +   +  +   L  LE+L    ++    
Sbjct: 61  SNGLS-FKGCCSQSDF--GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

Query: 527 LPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSG 585
              S+  +L +L  L +S        +     LS   +L + GNS++       F  L  
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 586 LDYLTISS 593
           L +L +S 
Sbjct: 177 LTFLDLSQ 184

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 59/270 (21%), Positives = 91/270 (33%), Gaps = 43/270 (15%)

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF--PQSLPFLNFTSLSILEL 192
           SS+  L LE  KL  + +   V ++L  L +L LS+  L+F    S      TSL  L+L
Sbjct: 28  SSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 193 SYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQ 252
           S+ N    +      +  L  L+ + S L           + NL  LD++          
Sbjct: 86  SF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------- 137

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
                                NG        L+ L  L +  NS++     + F  L  L
Sbjct: 138 ------------TRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 313 NSLYLSSSN----KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLS 368
             L LS           F   S      SL+ + ++     S      K   S+  L  S
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 369 NAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
              I  +         S  L+ ++L+ N F
Sbjct: 232 LNHIMTSKKQELQHFPSS-LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 76  SLKKLKLLDLSES--SFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD 133
            L +L  L LS +  SF G    +    ++L+YLDLS+  +           S+ + L  
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-------SNFLGLEQ 102

Query: 134 LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELS 193
           L    +L  +   L +++ +  V   L +L+ L +S+       +  F   +SL +L+++
Sbjct: 103 L---EHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 194 YDNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFS 247
            ++F       +F  +  L  L+L   QL   +       + +L+ L+++ N F 
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 31/234 (13%)

Query: 94  LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153
           +P  I   S+   L+L    L      + L       L  L     L L    LS     
Sbjct: 22  VPTGI--PSSATRLELESNKL------QSLPHGVFDKLTQL---TKLSLSSNGLSFKGCC 70

Query: 154 LQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIPQWLF-NIST 210
            Q      SL  L LS   +    ++   FL    L  L+  + N        +F ++  
Sbjct: 71  SQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 211 LVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLET 270
           L+ L++  +             + +L  L +A N        F +       + L  L  
Sbjct: 128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTELRNLTF 179

Query: 271 QRMNG----TISENI-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
             ++      +S      L+ L  LN+  N++   +    ++ L  L  L  S 
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 11/176 (6%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDL 128
           +      L++L+ LD   S+   M   ++  +L NL YLD+S+ + +             
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNG------ 144

Query: 129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS 188
                LSS   L + G    +      +  EL +L  L LS CQL       F + +SL 
Sbjct: 145 -IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 189 ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
           +L +S++NF S        +++L  L+   + +  S  +       +L  L+L  N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 54/316 (17%), Positives = 105/316 (33%), Gaps = 49/316 (15%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
            +   L+L  N     + ++ F+ L  L +L L ++  S         I   +   +   
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS--------KIHEKAFSPLR-- 102

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILS 404
                            + KL +S   + +  P+         L  + + +N+       
Sbjct: 103 ----------------KLQKLYISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKG 141

Query: 405 SLCSLPSLYWLRLGGNNL-SGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSL 463
               L ++  + +GGN L +        D  +L  L I   +   +P         L+ L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNEL 198

Query: 464 DISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523
            + +N I   I+           S L  L L  N++      SL  L  L  L L  N  
Sbjct: 199 HLDHNKIQ-AIEL--EDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK- 252

Query: 524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEP------YMLDLYGNSWEGV-IT 576
           L  +P  + +L  L+ +YL  N ++++   +   +           + L+ N      + 
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 577 EKHFRNLSGLDYLTIS 592
              FR ++    +   
Sbjct: 313 PATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 40/279 (14%)

Query: 283 QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF---SLR 339
            L  L AL L  N     I E  F  L KL  LY+S  N  LV       IPP    SL 
Sbjct: 76  GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK-NH-LVE------IPPNLPSSLV 126

Query: 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTI--PDWFWGVISQKLSVIDLSNNK 397
           ++ I+D ++            ++  + +    + ++   P  F G+   KL+ + +S  K
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAK 183

Query: 398 FFGGILSSLCS--LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG 455
                L+ +      +L  L L  N +       L   S+L  L +G N+   + + S+ 
Sbjct: 184 -----LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS-------LG 508
            L  L  L +  N ++     +       ++  L+ + L +N +   +  +         
Sbjct: 239 FLPTLRELHLDNNKLS----RVPAGLP--DLKLLQVVYLHTNNI-TKVGVNDFCPVGFGV 291

Query: 509 NLLCLEYLGLSEN--SFLGSLPTSIGNLSHLRALYLSFN 545
                  + L  N   +    P +   ++   A+     
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 25/203 (12%)

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
           P    L L  N++S            L AL +  N+  ++   +   L  L  L IS NH
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 470 ITG-----------------EIKELT-NAFSACNVSTLETLDLASNKLG-GNLPDSLGNL 510
           +                    I+++    FS   +  +  +++  N L          + 
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 511 LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS 570
           L L YL +SE   L  +P        L  L+L  N +  I  E++ + S+ Y L L  N 
Sbjct: 172 LKLNYLRISEAK-LTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 571 WEGVITEKHFRNLSGLDYLTISS 593
              +I       L  L  L + +
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 57/352 (16%), Positives = 100/352 (28%), Gaps = 88/352 (25%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNLRSS 219
           P    L L N  ++  +   F     L  L L   N  S+I +  F  +  L  L +  +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKN 112

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISE 279
            L     + PP    +L  L +  N         I+ +                      
Sbjct: 113 HLV----EIPPNLPSSLVELRIHDN--------RIRKVP-------------------KG 141

Query: 280 NIGQLAELVALNLYRNSWKGI-ITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
               L  +  + +  N  +        F  L KLN L +S +  +               
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT--------------- 185

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
                    +    P  L        L L +  I     +        KL  + L +N+ 
Sbjct: 186 --------GIPKDLPETLNE------LHLDHNKIQAIELEDLLRY--SKLYRLGLGHNQ- 228

Query: 399 FGGILSSL-----CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTS 453
               +  +       LP+L  L L  N LS  +   LPD   L  + +  N   ++    
Sbjct: 229 ----IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 454 M------GNLCNLHSLDISYNHIT-GEIKELTNAFSACNVSTLETLDLASNK 498
                        + + +  N +   E++     F    V+    +   + K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFR--CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 41/245 (16%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
              L  L + ++    +       L N+  +++    L+        +        D   
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--------DGLK 173

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
             YL +   KL+ +   L       +L ELHL + ++   +    L ++ L  L L + N
Sbjct: 174 LNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-N 227

Query: 197 FNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG-EKEQFI 254
               I       + TL  L+L +++LS  +P   P  +  L+ + L  N  +      F 
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-LKLLQVVYLHTNNITKVGVNDFC 285

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI-ITENHFQNLTKLN 313
               G   +                          ++L+ N      +    F+ +T   
Sbjct: 286 PVGFGVKRAYYNG----------------------ISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 314 SLYLS 318
           ++   
Sbjct: 324 AIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 46/243 (18%), Positives = 80/243 (32%), Gaps = 28/243 (11%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
             LLDL  +  S +   +   L +L  L L    + +  I ++           L   + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKA-------FSPLRKLQK 106

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNF-N 198
           L++    L ++   L       SLVEL + + ++       F    +++ +E+  +   N
Sbjct: 107 LYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 199 SQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS 258
           S      F+   L  L +  ++L+      P      L  L L  N         I+   
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT----GIPKDLPETLNELHLDHNKIQ-----AIELED 212

Query: 259 GCNNSTLETLETQRMN-GTISENI-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY 316
               S L  L         I       L  L  L+L  N    +       +L  L  +Y
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV--PAGLPDLKLLQVVY 270

Query: 317 LSS 319
           L +
Sbjct: 271 LHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 28/185 (15%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSD 127
           S      +   KL  L +SE+  +  +P ++     L  L L +  ++   I  E     
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQA--IELED---- 212

Query: 128 LIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFT 185
              L   S    L L   ++  + N    ++ LP+L ELHL N +L     +P    +  
Sbjct: 213 ---LLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDNNKL---SRVPAGLPDLK 264

Query: 186 SLSILELSYDNFNSQIPQWLF-------NISTLVTLNLRSSQLS-GSIPKFPPGKMCNLR 237
            L ++ L   N  +++    F         +    ++L ++ +    +       + +  
Sbjct: 265 LLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 238 RLDLA 242
            +   
Sbjct: 324 AIQFG 328

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 54/238 (22%), Positives = 81/238 (34%), Gaps = 15/238 (6%)

Query: 361 SVFKLTLSNAAISDTIPDWFWGVISQ-KLSVIDLSNNKFFGGILSSL--CSLPSLYWLRL 417
           S+ +LT+  A I   I      V+    L  + L N +  G     L   + P L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 418 GGNNLSGELS--TSLPDCS--RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE 473
              + +   +    L       L  L I     L      +     L +LD+S N   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 474 IKELTNAFSACNVSTLETLDLASNK---LGGNLPDSLGNLLCLEYLGLSENSFLGSLPTS 530
              L +A       TL+ L L +       G         + L+ L LS NS   +    
Sbjct: 189 R-GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 531 I-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD 587
                S L +L LSF  + ++      +LS    LDL  N  +   +      +  L 
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV---LDLSYNRLDRNPSPDELPQVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 22/249 (8%)

Query: 308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQL-GSAFPSWLK-TQASVFKL 365
           +L +L        ++ L   +R   I    L+++ + + ++ G+A P  L+ T   +  L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISG--LQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 366 TLSNAAIS--DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            L N + +  D         +   L V+ ++           +   P+L  L L  N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 424 GELSTSLPDC----SRLTALDIGGNRFLQLPST---SMGNLCNLHSLDISYNHITGEIKE 476
           GE       C      L  L +                     L  LD+S+N +      
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 477 LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSH 536
            +  +     S L +L+L+   L   +P  L   L    L LS N  L   P S   L  
Sbjct: 247 PSCDWP----SQLNSLNLSFTGLKQ-VPKGLPAKL--SVLDLSYNR-LDRNP-SPDELPQ 297

Query: 537 LRALYLSFN 545
           +  L L  N
Sbjct: 298 VGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 13/195 (6%)

Query: 411 SLYWLRLGGNNLSGELSTSLP---DCSRLTALDIGGNRFLQLPSTSMGNLC--NLHSLDI 465
           SL  L +    +   +          S L  L +            +      +L+ L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG 525
                      L           L+ L +A         + +     L  L LS+N  LG
Sbjct: 129 RNVSWATRDAWLAELQQ-WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 526 SLP----TSIGNLSHLRALYLSFNVM---SRIISENIGQLSEPYMLDLYGNSWEGVITEK 578
                          L+ L L    M   S + S       +   LDL  NS        
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 579 HFRNLSGLDYLTISS 593
                S L+ L +S 
Sbjct: 248 SCDWPSQLNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 13/178 (7%)

Query: 73  FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLP 132
             +    LK+L ++++         +     L  LDLS  N        E  +   +   
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD-N----PELGERGLISALCPL 198

Query: 133 DLSSSRYLHLEGMKLSKVTNWL-QVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSLSIL 190
              + + L L    +   +     +      L  L LS+  L +   +      + L+ L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 191 ELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG 248
            LS+     Q+P+ L   + L  L+L  ++L    P   P ++  +  L L  N F  
Sbjct: 259 NLSF-TGLKQVPKGLP--AKLSVLDLSYNRLD-RNPS--PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 50/250 (20%), Positives = 82/250 (32%), Gaps = 20/250 (8%)

Query: 235 NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ--RMNGTISENIGQLA--ELVAL 290
           +L+RL +               L     S L+ L  +   + GT    + +    +L  L
Sbjct: 69  SLKRLTVRAARIPSRI--LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 291 NLYRNSWKGIITE-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG 349
           NL   SW          Q   K     LS +    +           +L  + ++D    
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 350 SAFPSWLKTQASVFK----LTLSNAAISDTIPDWFWGVIS--QKLSVIDLSNNKFFGGIL 403
                        F     L L NA +  T       + +   +L  +DLS+N       
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 404 SSLCSLP-SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHS 462
           +  C  P  L  L L    L  ++   LP  ++L+ LD+  NR  + PS     L  + +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGN 300

Query: 463 LDISYNHITG 472
           L +  N    
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 39/231 (16%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            +  L+ L L     +G  PP +   +      L+ +N+         W +   WL +L 
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQ 144

Query: 136 SSRYLHLEGMKLSKVTNW---LQVVNELPSLVELHLSNCQL----NFPQSLPFLNFTSLS 188
                 L+ + +++  +     + V   P+L  L LS+           +L  L F +L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 189 ILELSYDNFNS---QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING 245
           +L L      +              L  L+L  + L  +           L  L+L+  G
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 246 FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNS 296
                   ++ +     + L  L+        + +  +L ++  L+L  N 
Sbjct: 265 --------LKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 49/296 (16%), Positives = 84/296 (28%), Gaps = 65/296 (21%)

Query: 138 RYLHLEGMKLS-KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
           + L +   ++  ++      V  +  L EL L N ++      P L  T   +  L+  N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 197 FN-SQIPQWLFNISTLVTLNLRSSQLSG----SIPKFPPGKMCNLRRLDLAINGFSGEKE 251
            + +    WL  +   +   L+   ++     +           L  LDL+ N   GE+ 
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI--ITENHFQNL 309
                                          +   L  L L     +    +        
Sbjct: 191 LISALCPL-----------------------KFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 310 TKLNSLYLSSSN-KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLS 368
            +L  L LS ++ +        DW  P  L  + ++   L                    
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDW--PSQLNSLNLSFTGLKQVPKG-------------- 271

Query: 369 NAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG 424
                          +  KLSV+DLS N+       S   LP +  L L GN    
Sbjct: 272 ---------------LPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 42/251 (16%), Positives = 70/251 (27%), Gaps = 64/251 (25%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           SLK+L +      S        +  +S LQ L L                          
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLE------------------------- 103

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL----NFPQSLPFLNFTSLSILE 191
                    ++++       +    P L  L+L N        +   L       L +L 
Sbjct: 104 --------NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 192 LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIP---KFPPGKMCNLRRLDLAINGFSG 248
           ++  +  +   + +     L TL+L  +   G         P K   L+ L L   G   
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-- 213

Query: 249 EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQN 308
                                 +  +G  S       +L  L+L  NS +          
Sbjct: 214 ----------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 309 LTKLNSLYLSS 319
            ++LNSL LS 
Sbjct: 252 PSQLNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 28/136 (20%), Positives = 41/136 (30%), Gaps = 17/136 (12%)

Query: 60  SARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQI 119
                   +  P    +L+ L L +    + SG+          LQ LDLS+ N     +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-N----SL 240

Query: 120 TKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSL 179
                     W   L     L+L    L +V   L        L  L LS  +L+     
Sbjct: 241 RDAAGAPSCDWPSQL---NSLNLSFTGLKQVPKGL-----PAKLSVLDLSYNRLD---RN 289

Query: 180 PF-LNFTSLSILELSY 194
           P       +  L L  
Sbjct: 290 PSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 71  PEFVYSLKKLKLLDLSESSFSGMLPPNI----GNLSNLQYLDLSYQNLKEYQITKELWVS 126
            E V     L  LDLS++   G               LQ L L    ++          +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 127 DLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTS 186
             + L      + L L    L               L  L+LS   L   + +P      
Sbjct: 226 ARVQL------QGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGL---KQVPKGLPAK 275

Query: 187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS 224
           LS+L+LSY N   + P     +  +  L+L+ +    S
Sbjct: 276 LSVLDLSY-NRLDRNPSPDE-LPQVGNLSLKGNPFLDS 311

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 8e-15
 Identities = 61/359 (16%), Positives = 117/359 (32%), Gaps = 58/359 (16%)

Query: 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
                 AE +  NL + S    +T+N   ++ ++                          
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQII------------------------- 49

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
                N+  + S     ++   +V KL L+   ++D  P        + L  + L  NK 
Sbjct: 50  ----ANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLTNL----KNLGWLFLDENK- 98

Query: 399 FGGI--LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
              I  LSSL  L  L  L L  N +S +++  L    +L +L +G N+   +  T +  
Sbjct: 99  ---IKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI--TVLSR 151

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
           L  L +L +  N I+ +I  L        ++ L+ L L+ N +  +   +L  L  L+ L
Sbjct: 152 LTKLDTLSLEDNQIS-DIVPLA------GLTKLQNLYLSKNHI--SDLRALAGLKNLDVL 202

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS-ENIGQLSEPYMLDLYGNSWEGVI 575
            L     L        NL     +  +   +       + G   +P +          V 
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

Query: 576 TEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYVTSPN 634
              +     G          +     ++  +   +++      T++           P 
Sbjct: 263 FIFYQPVTIGKAKARFHGRVTQ---PLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPT 318

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 42/255 (16%), Positives = 91/255 (35%), Gaps = 36/255 (14%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +  +    +L + S +         L+++  +  +  ++K         V  + +LP++ 
Sbjct: 19  AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--------VQGIQYLPNV- 67

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSY 194
               L L G KL+ +      +  L +L  L L   ++     L  L +   L  L L +
Sbjct: 68  --TKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEH 118

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
           +  +      L ++  L +L L +++++  I      ++  L  L L  N         I
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKIT-DITVL--SRLTKLDTLSLEDNQ--------I 165

Query: 255 QTLSGC-NNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
             +      + L+ L   + + +    +  L  L  L L+          NH  NL   N
Sbjct: 166 SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPN 224

Query: 314 SLYLSSSNKSLVFTM 328
           ++  +  +      +
Sbjct: 225 TVKNTDGSLVTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 34/270 (12%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L  +  +  + S    +    I  L N+  L L+   L +        +  L  L +L 
Sbjct: 41  ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD--------IKPLTNLKNL- 89

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSY 194
              +L L+  K+  +++    + +L  L  L L +  +     +  L +   L  L L  
Sbjct: 90  --GWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGI---SDINGLVHLPQLESLYLG- 139

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
           +N  + I   L  ++ L TL+L  +Q+S  I       +  L+ L L+ N  S      +
Sbjct: 140 NNKITDITV-LSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISD-----L 190

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
           + L+G  N  L+ LE       +++ I   + LV  N  +N+   ++T     +      
Sbjct: 191 RALAGLKN--LDVLE-LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 315 LYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
             +          +   +  P ++ +    
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 8e-10
 Identities = 47/252 (18%), Positives = 80/252 (31%), Gaps = 26/252 (10%)

Query: 72  EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWL 131
           + +  L  +  L L+ +  + +    + NL NL +L L    +            DL  L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKI-----------KDLSSL 105

Query: 132 PDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILE 191
            DL   + L LE   +S +      +  LP L  L+L N ++     L  L  T L  L 
Sbjct: 106 KDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNKITDITVLSRL--TKLDTLS 159

Query: 192 LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKE 251
           L  DN  S I   L  ++ L  L L  + +S  +       + NL  L+L       +  
Sbjct: 160 LE-DNQISDIVP-LAGLTKLQNLYLSKNHIS-DLRAL--AGLKNLDVLELFSQECLNKPI 214

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK 311
                L   N   ++  +   +   I  + G   +             +    +      
Sbjct: 215 NHQSNLVVPNT--VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

Query: 312 LNSLYLSSSNKS 323
                       
Sbjct: 273 KAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 7e-09
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 32/223 (14%)

Query: 97  NIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV 156
                +     +L  ++           V+D +   +L+S   +      +  V      
Sbjct: 16  PDDAFAETIKDNLKKKS-----------VTDAVTQNELNSIDQIIANNSDIKSVQG---- 60

Query: 157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNL 216
           +  LP++ +L L+  +L      P  N  +L  L L   N    +   L ++  L +L+L
Sbjct: 61  IQYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDE-NKIKDLSS-LKDLKKLKSLSL 116

Query: 217 RSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGT 276
             + +S  I       +  L  L L  N  +      I  LS      L+TL  +    +
Sbjct: 117 EHNGIS-DINGLV--HLPQLESLYLGNNKITD-----ITVLSRLTK--LDTLSLEDNQIS 166

Query: 277 ISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
               +  L +L  L L +N    I        L  L+ L L S
Sbjct: 167 DIVPLAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 51/350 (14%), Positives = 103/350 (29%), Gaps = 81/350 (23%)

Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-N 183
           +  +      + +   +L+   ++         NEL S+ ++  +N  +   +S+  +  
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDI---KSVQGIQY 63

Query: 184 FTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAI 243
             +++ L L+ +         L +I  L  L                    NL  L L  
Sbjct: 64  LPNVTKLFLNGNK--------LTDIKPLTNLK-------------------NLGWLFLDE 96

Query: 244 NGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
           N         + +L       L++L  +    +    +  L +L +L L  N    I   
Sbjct: 97  NKIKD-----LSSLKDLKK--LKSLSLEHNGISDINGLVHLPQLESLYLGNN---KITDI 146

Query: 304 NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF 363
                LTKL++L L   N+                    I+D          L     + 
Sbjct: 147 TVLSRLTKLDTLSLED-NQ--------------------ISDI-------VPLAGLTKLQ 178

Query: 364 KLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
            L LS   ISD         ++    L V++L + +     ++   +L     ++    +
Sbjct: 179 NLYLSKNHISDLRA------LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT 471
           L      S         +      F    S        +      ++   
Sbjct: 233 LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 48/294 (16%), Positives = 98/294 (33%), Gaps = 39/294 (13%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP------FSL 338
             + +L+L  N     I+ +  Q    L +L L+S+  +         I         SL
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT--------IEEDSFSSLGSL 102

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
             + ++   L +   SW K  +S+  L L       T+ +        KL ++ + N   
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 399 FGGI-LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
           F  I       L  L  L +  ++L      SL     ++ L +   + + L    +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 458 CNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG 517
            ++  L++    +                          ++L     +SL        + 
Sbjct: 222 SSVECLELRDTDLDT---------------------FHFSELSTGETNSLIKKFTFRNVK 260

Query: 518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
           +++ S L  +   +  +S L  L  S N +  +      +L+    + L+ N W
Sbjct: 261 ITDES-LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           +++ +  +DLSNN+      S L    +L  L L  N ++     S      L  LD+  
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
           N    L S+    L +L  L++  N     + E T+ FS  +++ L+ L + +      +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE-TSLFS--HLTKLQILRVGNMDTFTKI 165

Query: 504 PD-SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY 562
                  L  LE L +  +      P S+ ++ ++  L L       ++   +   S   
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 563 MLDLYGNSWEGV----ITEKHFRNLSGLDYLTISSSNSSLVFNIRH 604
            L+L     +      ++     +L               +F +  
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 40/299 (13%)

Query: 178 SLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR 237
           S+P     ++  L+LS +         L     L  L L S+ ++ +I +     + +L 
Sbjct: 45  SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103

Query: 238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSW 297
            LDL+ N        ++  LS               +         L+ L  LNL  N +
Sbjct: 104 HLDLSYN--------YLSNLS---------------SSWFK----PLSSLTFLNLLGNPY 136

Query: 298 KGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLK 357
           K +   + F +LTKL  L +  +  +     R D+     L ++ I+   L S  P  LK
Sbjct: 137 KTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK--------FFGGILSSLCSL 409
           +  +V  L L        + + F  V S  +  ++L +             G  +SL   
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSS-VECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
            +   +++   +L  ++   L   S L  L+   N+   +P      L +L  + +  N
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 52/261 (19%), Positives = 93/261 (35%), Gaps = 25/261 (9%)

Query: 80  LKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQIT--------KELWVSD--L 128
           +K LDLS +  +  +  +      NLQ L L+   +   +          + L +S   L
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 129 IWLP-----DLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNC-QLNFPQSLPFL 182
             L       LSS  +L+L G     +     + + L  L  L + N       Q   F 
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 183 NFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA 242
             T L  LE+   +  S  P+ L +I  +  L L   Q    + +       ++  L+L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 243 INGFSGEKEQFIQTLSGCNNSTLETLETQRMNG----TISENIGQLAELVALNLYRNSWK 298
                      + T    +     T    ++       + + + Q++ L+ L   RN  K
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290

Query: 299 GIITENHFQNLTKLNSLYLSS 319
             + +  F  LT L  ++L +
Sbjct: 291 S-VPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           S++ +  L L       +L   +   S+++ L+L   +L  +  + EL   +   L    
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKF 254

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILEL 192
           + R + +    L      ++++N++  L+EL  S  QL   +S+P   F   TSL  + L
Sbjct: 255 TFRNVKITDESL---FQVMKLLNQISGLLELEFSRNQL---KSVPDGIFDRLTSLQKIWL 308

Query: 193 S 193
            
Sbjct: 309 H 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 53/218 (24%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSY------------QNLKEYQITKE 122
           SL  L+ LDLS +  S  L  +    LS+L +L+L               +L + QI + 
Sbjct: 98  SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 123 LWVSDLIWLPD-----LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ 177
             +     +       L+    L ++   L       + +  + ++  L L   Q     
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP--KSLKSIQNVSHLILHMKQHILLL 214

Query: 178 SLPFLNFTSLSILELSY-------------------------------DNFNSQIPQWLF 206
            +     +S+  LEL                                 D    Q+ + L 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 207 NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
            IS L+ L    +QL  S+P     ++ +L+++ L  N
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 83/478 (17%), Positives = 147/478 (30%), Gaps = 97/478 (20%)

Query: 102 SNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK--VTNWLQVVNE 159
            ++Q LD+  + L + +   EL       LP L   + + L+   L++    +    +  
Sbjct: 3   LDIQSLDIQCEELSDARW-AEL-------LPLLQQCQVVRLDDCGLTEARCKDISSALRV 54

Query: 160 LPSLVELHLSNCQLNFPQSLPFL------NFTSLSILELSYDNFNSQ----IPQWLFNIS 209
            P+L EL+L + +L     +  +          +  L L            +   L  + 
Sbjct: 55  NPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 210 TLVTLNLRSSQLSGS----IPKFPPGKMCNLRRLDLAINGFSGEKEQFI-QTLSGCNNST 264
           TL  L+L  + L  +    + +      C L +L L     S    + +   L       
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR--AKPD 171

Query: 265 LETLETQRMNGTISENIGQLAE--------LVALNLYRN-----SWKGIITENHFQNLTK 311
            + L     N      +  L +        L AL L        + + +       +   
Sbjct: 172 FKELTVSN-NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC--GIVASKAS 228

Query: 312 LNSLYLSSSN------KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365
           L  L L S+         L   +     P   LR + I +C + +     L     V + 
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLH---PSSRLRTLWIWECGITAKGCGDL---CRVLRA 282

Query: 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL-----PSLYWLRLGGN 420
                               + L  + L+ N+        LC         L  L +   
Sbjct: 283 -------------------KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 421 NLSGE----LSTSLPDCSRLTALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHIT 471
           + +       S+ L     L  L I  NR       +L          L  L ++   ++
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 472 GE-IKELTNAFSACNVSTLETLDLASNKLGG----NLPDSLGNLLC-LEYLGLSENSF 523
                 L     A    +L  LDL++N LG      L +S+    C LE L L +  +
Sbjct: 384 DSSCSSLAATLLAN--HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 71/384 (18%), Positives = 128/384 (33%), Gaps = 82/384 (21%)

Query: 209 STLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGC--NNSTLE 266
             + +L+++  +LS +        +   + + L   G +   E   + +S     N  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALA 59

Query: 267 TLETQRMNGTISEN-IG-----QLAE--------LVALNLYRNSWKGIITENHFQNLTKL 312
            L        +  N +G      + +        +  L+L        +T      L   
Sbjct: 60  ELN-------LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC----LTGAGCGVL--- 105

Query: 313 NSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA-----FPSWLKTQASVFKLTL 367
            S  L +                 +L+++ ++D  LG A         L  Q  + KL L
Sbjct: 106 -SSTLRTLP---------------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 368 SNAAISDTIPDWFWGVIS--QKLSVIDLSNNKFFGGILSSLC-----SLPSLYWLRLGGN 420
              ++S    +    V+        + +SNN      +  LC     S   L  L+L   
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 421 NLSGE----LSTSLPDCSRLTALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHIT 471
            ++ +    L   +   + L  L +G N+       +L    +     L +L I    IT
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 472 GE-IKELTNAFSACNVSTLETLDLASNKLGG----NLPDSLGNLLC-LEYLGLSENSF-- 523
            +   +L     A    +L+ L LA N+LG      L ++L    C LE L +   SF  
Sbjct: 270 AKGCGDLCRVLRAK--ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 524 --LGSLPTSIGNLSHLRALYLSFN 545
                  + +     L  L +S N
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 22/182 (12%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCS-LPSLYWLRLGGNNLSGE----LSTSLPDCSRLTA 438
           +S  +  +D+   +      + L   L     +RL    L+      +S++L     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 439 LDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETL 492
           L++  N         +        C +  L +    +TG     L++        TL+ L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQEL 118

Query: 493 DLASNKLGG----NLPDSLGNLLC-LEYLGLSENSF----LGSLPTSIGNLSHLRALYLS 543
            L+ N LG      L + L +  C LE L L   S        L + +      + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 544 FN 545
            N
Sbjct: 179 NN 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 31/200 (15%)

Query: 387 KLSVIDLSNNKFFGGILSSL-----CSLPSLYWLRLGGNNLSGELSTSLP-----DCSRL 436
           +L V+DLS  +     + ++      SL  L  L L GN +      SL        S L
Sbjct: 53  ELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPI-----QSLALGAFSGLSSL 102

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS 496
             L         L +  +G+L  L  L++++N I     +L   FS  N++ LE LDL+S
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFS--NLTNLEHLDLSS 158

Query: 497 NKLGGNLP----DSLGNLLCLEY-LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRII 551
           NK+  ++       L  +  L   L LS N  +  +         L+ L L  N +  + 
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVP 216

Query: 552 SENIGQLSEPYMLDLYGNSW 571
                +L+    + L+ N W
Sbjct: 217 DGIFDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH 469
            S   L L  N L    S S      L  LD+       +   +  +L +L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 470 ITGEIKEL-TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP 528
           I      L   AFS    S+L+ L      L       +G+L  L+ L ++ N  + S  
Sbjct: 88  IQ----SLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFK 140

Query: 529 TS--IGNLSHLRALYLSFNVMSRIISE---NIGQLSEPYM-LDLYGN 569
                 NL++L  L LS N +  I       + Q+    + LDL  N
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 50/247 (20%)

Query: 80  LKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD----- 133
            K LDLS +     L      +   LQ LDLS   ++               + D     
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQS 74

Query: 134 LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELS 193
           LS    L L G  +  +       + L SL +L      L   ++ P  +  +L  L ++
Sbjct: 75  LSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 194 YDNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQ 252
           ++   S      F N++ L  L+L S+++  SI       +  L ++             
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SI---YCTDLRVLHQM-----------PL 177

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
              +L    N              I     +   L  L L  N  K  + +  F  LT L
Sbjct: 178 LNLSLDLSLNPM----------NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSL 226

Query: 313 NSLYLSS 319
             ++L +
Sbjct: 227 QKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 54/273 (19%), Positives = 85/273 (31%), Gaps = 79/273 (28%)

Query: 161 PSLVELHLSNCQLNFPQSLP---FLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNL 216
            S   L LS   L   + L    F +F  L +L+LS       I    + ++S L TL L
Sbjct: 28  FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLIL 83

Query: 217 RSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGT 276
             + +  S+       + +L++L              + +L                   
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETN--------LASLE------------------ 116

Query: 277 ISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF 336
            +  IG L  L  LN+  N  +      +F NLT L  L LSS                 
Sbjct: 117 -NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS----------------- 158

Query: 337 SLRQMAINDCQLGS----AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVID 392
                     ++ S          +       L LS   ++   P  F  +   +L  + 
Sbjct: 159 ---------NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLKELA 206

Query: 393 LSNNKFFGGILSSL-----CSLPSLYWLRLGGN 420
           L  N+     L S+       L SL  + L  N
Sbjct: 207 LDTNQ-----LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 49/249 (19%), Positives = 77/249 (30%), Gaps = 64/249 (25%)

Query: 290 LNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP--FSLRQMAINDCQ 347
           L+L  N  +  +    F +  +L  L LS              I    +           
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------TIEDGAYQ---------S 74

Query: 348 LGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC 407
           L       L T      L L+   I       F G     L  +           L+SL 
Sbjct: 75  LSH-----LST------LILTGNPIQSLALGAFSG--LSSLQKLVAVETN-----LASLE 116

Query: 408 S-----LPSLYWLRLGGNNLSGELSTSLP------DCSRLTALDIGGNRFLQLPSTSMGN 456
           +     L +L  L +  N +      S        + + L  LD+  N+   +  T +  
Sbjct: 117 NFPIGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 457 LCNL----HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLC 512
           L  +     SLD+S N +   I+    AF       L+ L L +N+L          L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQP--GAFKEIR---LKELALDTNQLKSVPDGIFDRLTS 225

Query: 513 LEYLGLSEN 521
           L+ + L  N
Sbjct: 226 LQKIWLHTN 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT--GEIKE 476
           G + +  ++ +    + LT + +       L  T +    N+  L I+  H T    I  
Sbjct: 31  GQSSTANITEA--QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISG 86

Query: 477 LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSH 536
           L+N         LE L +    +  +   +L  L  L  L +S ++   S+ T I  L  
Sbjct: 87  LSN---------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 537 LRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
           + ++ LS+N     I   +  L E   L++  +   GV   +   +   L+ L   S
Sbjct: 138 VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD---GVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419
            +     L  ++ ++             L+ I L+N       L+ +    ++  L +  
Sbjct: 23  KAYLNGLLGQSSTANITEAQM-----NSLTYITLANINV--TDLTGIEYAHNIKDLTINN 75

Query: 420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG----EIK 475
            + +      +   S L  L I G         ++  L +L  LDIS++        +I 
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLS 535
            L           + ++DL+ N    ++   L  L  L+ L +  +  +      I +  
Sbjct: 134 TLPK---------VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG-VHDY-RGIEDFP 181

Query: 536 HLRALYLSFN 545
            L  LY    
Sbjct: 182 KLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 20/142 (14%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN 421
            LT++N   ++  P      IS    L  + +         + +L  L SL  L +  + 
Sbjct: 70  DLTINNIHATNYNP------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG--EIKELTN 479
               + T +    ++ ++D+  N  +      +  L  L SL+I ++ +     I++   
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK 182

Query: 480 AFSACNVSTLETLDLASNKLGG 501
                    L  L   S  +GG
Sbjct: 183 ---------LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 26/174 (14%), Positives = 65/174 (37%), Gaps = 19/174 (10%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
           +  L  + L+  + + +    I    N++ L ++  +            ++   +  LS+
Sbjct: 43  MNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA-----------TNYNPISGLSN 89

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
              L + G  ++  ++ +  ++ L SL  L +S+   +            ++ ++LSY+ 
Sbjct: 90  LERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 197 FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK 250
             + I   L  +  L +LN++   +              L +L        G+K
Sbjct: 148 AITDIMP-LKTLPELKSLNIQFDGVH-DYRGI--EDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 25/196 (12%)

Query: 283 QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN-KSLVFTMRSDWIPPFS---- 337
                +   L ++S   I        +  L  + L++ N            +        
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQ----MNSLTYITLANINVTD---------LTGIEYAHN 67

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK 397
           ++ + IN+    +  P  +   +++ +L +    ++        G+    L+++D+S++ 
Sbjct: 68  IKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSA 123

Query: 398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNL 457
               IL+ + +LP +  + L  N    ++   L     L +L+I  +         + + 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY--RGIEDF 180

Query: 458 CNLHSLDISYNHITGE 473
             L+ L      I G+
Sbjct: 181 PKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/172 (15%), Positives = 65/172 (37%), Gaps = 20/172 (11%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           + K      L +SS +         +++L Y+ L+  N           V+DL  +    
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-----------VTDLTGIEYAH 66

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           + + L +  +  +        ++ L +L  L +    +   +       TSL++L++S+ 
Sbjct: 67  NIKDLTINNIHATNYNP----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFS 247
             +  I   +  +  + +++L  +     I       +  L+ L++  +G  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L  L+ L +     +    PN+  L++L  LD+S+    +  +TK         +  L 
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK---------INTLP 136

Query: 136 SSRYLHLEG-MKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELS 193
               + L     ++ +      +  LP L  L++    ++       + +F  L+ L   
Sbjct: 137 KVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAF 189

Query: 194 YDNFNS 199
                 
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 24/179 (13%)

Query: 254 IQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
              ++    ++L  +    +N T    I     +  L +           N    L+ L 
Sbjct: 35  TANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLE 91

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFS----LRQMAINDCQLGSAFPSWLKTQASVFKLTLS- 368
            L +   + +      SD IP  S    L  + I+      +  + + T   V  + LS 
Sbjct: 92  RLRIMGKDVT------SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 369 NAAISDTIPDWFWGVISQ--KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE 425
           N AI+D +P      +    +L  +++  +         +   P L  L      + G+
Sbjct: 146 NGAITDIMP------LKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGGK 196

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 34/221 (15%)

Query: 337 SLRQMAINDCQLG----SAFPSWLKTQASVFKLTLSNAAISD-----------TIPDWFW 381
            L  + ++D   G         +L     +  L L N  +              +     
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 382 GVISQKLSVIDLSNNKFFGG----ILSSLCSLPSLYWLRLGGNNLSGE-----LSTSLPD 432
              +  L  I    N+   G       +  S   L+ +++  N +  E     L   L  
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 433 CSRLTALDIGGNRF----LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVS 487
           C  L  LD+  N F        + ++ +  NL  L ++   ++      + +AFS     
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 488 TLETLDLASNKLGGN----LPDSLGNLLC-LEYLGLSENSF 523
            L+TL L  N++  +    L   +   +  L +L L+ N F
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 49/289 (16%), Positives = 92/289 (31%), Gaps = 63/289 (21%)

Query: 336 FSLRQMAINDCQLGS----AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVI------- 384
           FS+   ++    + +    +  + L    SV ++ LS   I                   
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTE------AARWLSENIA 57

Query: 385 -SQKLSVIDLSNNKF----------FGGILSSLCSLPSLYWLRLGGNNLSGE----LSTS 429
             + L + + S+                +L +L   P L+ +RL  N         L   
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 430 LPDCSRLTALDIGGNRF-------------LQLPSTSMGNLCNLHSLDISYNHITGE-IK 475
           L   + L  L +  N                   +    N   L S+    N +    +K
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 476 ELTNAFSACNVSTLETLDLASNKLG-----GNLPDSLGNLLCLEYLGLSENSF----LGS 526
           E    F +     L T+ +  N +        L + L     L+ L L +N+F      +
Sbjct: 178 EWAKTFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 527 LPTSIGNLSHLRALYLSFNVMS----RIISENIGQLSEPYM--LDLYGN 569
           L  ++ +  +LR L L+  ++S      + +   +L    +  L L  N
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 58/383 (15%), Positives = 107/383 (27%), Gaps = 97/383 (25%)

Query: 162 SLVELHLSNCQLNFPQSLPFL----NFTSLSILELSYDNFNSQ----IPQWLFNISTLVT 213
           S+    L    +                S+  + LS +   ++    + + + +   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 214 LNLRSSQLSGSIPKFPPG---------KMCNLRRLDLAINGFSGE-KEQFIQTLSGCNNS 263
                        + P           K   L  + L+ N F    +E  I  LS   ++
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS--KHT 122

Query: 264 TLETLETQRMNGTISEN-IG-QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN 321
            LE L        +  N +G Q    +A  L   +               L S+      
Sbjct: 123 PLEHL-------YLHNNGLGPQAGAKIARALQELAVNKKAKNA-----PPLRSIICG--- 167

Query: 322 KSLVFTMRSDWIPPFSLRQMAINDCQLG----SAFPSWLKTQASVFKLTLSNAAISDTIP 377
                                    +L       +    ++   +  + +    I     
Sbjct: 168 -----------------------RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-- 202

Query: 378 DWFWGVIS---------QKLSVIDLSNNKF----FGGILSSLCSLPSLYWLRLGGNNLSG 424
               G+           Q+L V+DL +N F       +  +L S P+L  L L    LS 
Sbjct: 203 ----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 425 E----LSTSLPDCS--RLTALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHITGE 473
                +  +        L  L +  N         L +     + +L  L+++ N  + E
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

Query: 474 ---IKELTNAFSACNVSTLETLD 493
              + E+   FS      L+ LD
Sbjct: 319 DDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 18/107 (16%)

Query: 454 MGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKLGGN----LPDSLG 508
           M    ++    +  + IT E  K +          +++ + L+ N +G      L +++ 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLSENIA 57

Query: 509 NLLCLEYLGLSENSF----------LGSLPTSIGNLSHLRALYLSFN 545
           +   LE    S+             L  L  ++     L  + LS N
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 52/341 (15%), Positives = 114/341 (33%), Gaps = 59/341 (17%)

Query: 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
                LA  + +   +++    +T     +L  + +L    +                  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTG----------------- 52

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNN 396
               +   +      + L        L L +  I+D  P      +    K++ ++LS N
Sbjct: 53  ----VTTIEGVQYLNN-LI------GLELKDNQITDLAP------LKNLTKITELELSGN 95

Query: 397 KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
                 +S++  L S+  L L    ++    T L   S L  L +  N+   +    +  
Sbjct: 96  PL--KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNIS--PLAG 149

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
           L NL  L I    ++ ++  L       N+S L TL    NK+  ++   L +L  L  +
Sbjct: 150 LTNLQYLSIGNAQVS-DLTPLA------NLSKLTTLKADDNKI-SDIS-PLASLPNLIEV 200

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT 576
            L  N  +  +   + N S+L  + L+      I ++ +   +   + ++        I 
Sbjct: 201 HLKNNQ-ISDVS-PLANTSNLFIVTLTNQ---TITNQPVFYNNNLVVPNVVKGPSGAPIA 255

Query: 577 EKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRG 617
                +        ++ + +S + N+ + +           
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTV 296

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 34/244 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +L     +   +S+ +  +     +L  +  L      +             +  +  L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-----------TIEGVQYLN 63

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           +   L L+  +++ +      +  L  + EL LS   L    ++      S+  L+L+  
Sbjct: 64  NLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTST 117

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
                 P  L  +S L  L L  +Q++ +I       + NL+ L +     S      + 
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSD-----LT 167

Query: 256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL 315
            L+  +   L TL+      +    +  L  L+ ++L  N    I   +   N + L  +
Sbjct: 168 PLANLSK--LTTLKADDNKISDISPLASLPNLIEVHLKNN---QISDVSPLANTSNLFIV 222

Query: 316 YLSS 319
            L++
Sbjct: 223 TLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 53/285 (18%), Positives = 104/285 (36%), Gaps = 36/285 (12%)

Query: 265 LETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSL 324
              +   + N T +     L  +  L+ +      I      Q L  L  L L  +  + 
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQIT- 76

Query: 325 VFTMRSDWIPPFS----LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWF 380
                   + P      + ++ ++   L +     +    S+  L L++  I+D  P   
Sbjct: 77  -------DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 381 WGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD 440
            G+    L V+ L  N+     +S L  L +L +L +G   +S    T L + S+LT L 
Sbjct: 126 AGL--SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
              N+   +    + +L NL  + +  N I+ ++  L       N S L  + L +  + 
Sbjct: 180 ADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVSPLA------NTSNLFIVTLTNQTIT 230

Query: 501 GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
                   NL+    +     + +   P +I +     +  L++N
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 34/255 (13%)

Query: 72  EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWL 131
           E V  L  L  L+L ++  + +    + NL+ +  L+LS   LK           ++  +
Sbjct: 57  EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLK-----------NVSAI 103

Query: 132 PDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSIL 190
             L S + L L   +++ VT     +  L +L  L+L   Q+    ++  L   T+L  L
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQI---TNISPLAGLTNLQYL 156

Query: 191 ELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK 250
            +     +   P  L N+S L TL    +++S  I   P   + NL  + L  N  S   
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISD-- 209

Query: 251 EQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLT 310
              +  L+  +N  L  +         ++ +     LV  N+ +      I      +  
Sbjct: 210 ---VSPLANTSN--LFIVTLTN-QTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

Query: 311 KLNSLYLSSSNKSLV 325
              S  L+ +  S +
Sbjct: 264 TYASPNLTWNLTSFI 278

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 45/209 (21%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 387 KLSVIDLSNNKFFGGI-LSSLCSLPSLYWLRL-GGNNLSGELSTSLPDCSRLTALDIGGN 444
            L  I++S N     I      +LP L+ +R+   NNL      +  +   L  L I   
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLP 504
               LP     +      LDI  N     I+   N+F   +      L L  N +   + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLS-FESVILWLNKNGIQ-EIH 170

Query: 505 DSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYM 563
           +S  N   L+ L LS+N+ L  LP  +    S    L +S   +  + S  +  L +   
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 564 LDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
              Y               L  L   +++
Sbjct: 231 RSTYNLKKLPT-----LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 32/217 (14%)

Query: 404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSL 463
             +C   S        + ++ E+ + LP       L     +   +   +     +L  +
Sbjct: 4   HRICH-CSNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKI 59

Query: 464 DISYNHITGEIKELTNAFSAC-----------------------NVSTLETLDLASNKLG 500
           +IS N +   I+   + FS                         N+  L+ L +++  + 
Sbjct: 60  EISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 501 GNLPDSLGNLLCLEYLGLSENSFLGSLPT-SIGNLSH-LRALYLSFNVMSRIISENIGQL 558
                   + L    L + +N  + ++   S   LS     L+L+ N +  I +      
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177

Query: 559 SEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
               +     N+ E  +    F   SG   L IS + 
Sbjct: 178 QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR 213

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 35/269 (13%), Positives = 71/269 (26%), Gaps = 50/269 (18%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
              + L       + +I +  F     L  + +S  N  L      + I       +   
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQ-NDVL------EVIEADVFSNL--- 78

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNA-AISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL 403
                      L        + +  A  +    P+ F  +    L  + +SN       +
Sbjct: 79  ---------PKLHE------IRIEKANNLLYINPEAFQNL--PNLQYLLISNTG-----I 116

Query: 404 SSL-----CSLPSLYWLRLGGNNLSGELSTSLPD--CSRLTALDIGGNRFLQLPSTSMGN 456
             L             L +  N     +  +           L +  N   ++ +++   
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
                      N++  E+    + F     S    LD++  ++       L NL  L   
Sbjct: 177 TQLDELNLSDNNNLE-ELPN--DVFH--GASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFN 545
                  L +L      L  L    L++ 
Sbjct: 232 STYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 38/241 (15%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAI 343
             +L  + + +N    +I  + F NL KL+ + +  +N  L++      I P + + +  
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLY------INPEAFQNLP- 104

Query: 344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL 403
                            ++  L +SN  I   +PD    + S +  ++D+ +N     I 
Sbjct: 105 -----------------NLQYLLISNTGIK-HLPD-VHKIHSLQKVLLDIQDNINIHTIE 145

Query: 404 S-SLCSLPS-LYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
             S   L      L L  N +    +++              N   +LP+          
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 462 SLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN 521
            LDIS   I   +          N+  L      + K    LP +L  L+ L    L+  
Sbjct: 206 ILDISRTRIH-SLPS--YGLE--NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

Query: 522 S 522
           S
Sbjct: 257 S 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 52/266 (19%), Positives = 87/266 (32%), Gaps = 45/266 (16%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NISTLVTLNL-RS 218
            + +EL     +L   Q   F  F  L  +E+S ++    I   +F N+  L  + + ++
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 219 SQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMN--GT 276
           + L   I       + NL+ L ++  G      + +  +   ++     L+ Q      T
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNTGI-----KHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 277 ISENI--GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIP 334
           I  N   G   E V L L +N  + I   N   N T+L+ L LS +N             
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGTQLDELNLSDNN------------- 188

Query: 335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLS 394
                        L           +    L +S   I          +  +KL      
Sbjct: 189 ------------NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL--KKLRARSTY 234

Query: 395 NNKFFGGILSSLCSLPSLYWLRLGGN 420
           N K     L +L  L +L    L   
Sbjct: 235 NLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 62/254 (24%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDL 134
               L+ +++S++    ++  ++  NL  L  + +   N     +           +   
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN----NLLY---------INP- 97

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSY 194
                               +    LP+L  L +SN  +     +  ++     +L++  
Sbjct: 98  --------------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 195 DNFNSQIPQWLFN--ISTLVTLNLRSSQLSGSIPK--FPPGKMCNLRRLD------LAIN 244
           +     I +  F       V L L  + +   I    F   ++  L   D      L  +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 245 GFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITEN 304
            F G     I  +S      + +L +  +          L +L A + Y           
Sbjct: 197 VFHGASGPVILDISRTR---IHSLPSYGLEN--------LKKLRARSTYNLK-----KLP 240

Query: 305 HFQNLTKLNSLYLS 318
             + L  L    L+
Sbjct: 241 TLEKLVALMEASLT 254

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 15/216 (6%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCSRLTALDIG 442
           +      + L           +  +LP++  + +  +    +L + S  + S++T ++I 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 443 GNRFLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG 501
             R L  +   ++  L  L  L I    +     +LT  +S         L++  N    
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS---TDIFFILEITDNPYMT 144

Query: 502 NLPDSLGNLLC--LEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI--GQ 557
           ++P +    LC     L L  N    S+     N + L A+YL+ N    +I ++   G 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 558 LSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS 593
            S P +LD+   S    +T    + L  L  L   +
Sbjct: 204 YSGPSLLDVSQTS----VTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR-LTALDIGGNRFLQLPSTSMGNLCNLHS 462
           S  C        R+   ++       +P        L +       +PS +  NL N+  
Sbjct: 5   SPPCECHQEEDFRVTCKDI-----QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISR 59

Query: 463 LDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGNLP-DSLGNLLCLEYLGLSE 520
           + +S +     +++L +++F   N+S +  +++ + +    +  D+L  L  L++LG+  
Sbjct: 60  IYVSID---VTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 521 NSFLGSLP--TSIGNLSHLRALYLSFNVMSRIISENI--GQLSEPYMLDLYGN 569
              L   P  T + +      L ++ N     I  N   G  +E   L LY N
Sbjct: 115 TG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 29/196 (14%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP------FS 337
           L  +  + +  +     +  + F NL+K+  + +  + ++L +      I P        
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI-RNTRNLTY------IDPDALKELPL 106

Query: 338 LRQMAINDCQLGSAFPSWLKTQASVFKLTL---SNAAISDTIPDWFWGVISQKLSVIDLS 394
           L+ + I +  L   FP   K  ++     L    N  ++    + F G+ ++    + L 
Sbjct: 107 LKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLY 164

Query: 395 NNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD------CSRLTALDIGGNRFLQ 448
           NN  F  +     +   L  + L  N       T +         S  + LD+       
Sbjct: 165 NNG-FTSVQGYAFNGTKLDAVYLNKNK----YLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 449 LPSTSMGNLCNLHSLD 464
           LPS  + +L  L + +
Sbjct: 220 LPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 64/263 (24%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAI 343
                 L L     +  I  + F NL  ++ +Y+S              +   S   +  
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVT-------LQQLESHSFYNL-- 79

Query: 344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP-DWFWGVISQKLSVIDLSNNKFFGGI 402
                           + V  + + N      I  D    +    L  + + N       
Sbjct: 80  ----------------SKVTHIEIRNTRNLTYIDPDALKEL--PLLKFLGIFNTG----- 116

Query: 403 LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQ-LPSTSMGNLCN-L 460
              L   P L               T +        L+I  N ++  +P  +   LCN  
Sbjct: 117 ---LKMFPDL---------------TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158

Query: 461 HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLP-DSLGNLL-CLEYLGL 518
            +L +  N  T  ++    AF   N + L+ + L  NK    +  D+ G +      L +
Sbjct: 159 LTLKLYNNGFT-SVQG--YAF---NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 519 SENSFLGSLPTSI-GNLSHLRAL 540
           S+ S + +LP+    +L  L A 
Sbjct: 213 SQTS-VTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 40/181 (22%)

Query: 80  LKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLP-----D 133
            + L L E+     +P +   NL N+  + +S        + +         L      +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV----TLQQ---------LESHSFYN 78

Query: 134 LSSSRYLHLEGMKLSKVTNWLQVVNE-----LPSLVELHLSNCQL-NFPQSLPFLNFTSL 187
           LS   ++ +        T  L  ++      LP L  L + N  L  FP      +    
Sbjct: 79  LSKVTHIEIRN------TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132

Query: 188 SILELSYDNFNSQIPQWLFN--ISTLVTLNLRSSQLSGSIPK--FPPGKMCNLRRLDLAI 243
            ILE++ + + + IP   F    +  +TL L ++  + S+    F       L  + L  
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF---NGTKLDAVYLNK 188

Query: 244 N 244
           N
Sbjct: 189 N 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSY-QNLKEYQITKELWVSDLIWLPD 133
           +L  +  + +S       L  +   NLS + ++++   +NL    I  +          +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALK-------E 103

Query: 134 LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLS-NCQLNFPQSLPFLNFTSLSI-LE 191
           L   ++L +    L    + L  V        L ++ N  +       F    + ++ L+
Sbjct: 104 LPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 192 LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK--FPPGKMCNLRRLDLAINGFS 247
           L  + F S +  + FN + L  + L  ++    I K  F  G       LD++    +
Sbjct: 163 LYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVT 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 49/186 (26%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 392 DLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQLP 450
           DL +NK       +   L  L  L L  N L   L   +      L  L +  N+   LP
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 451 STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLP----DS 506
                 L NL  L +  N +   +      F   +++ L  L L  N+L  +LP    D 
Sbjct: 102 IGVFDQLVNLAELRLDRNQLK-SLPP--RVFD--SLTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 507 LGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLD 565
           L +L   + L L  N  L  +P      L+ L+ L L  N + R+       L +  ML 
Sbjct: 156 LTSL---KELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 566 LYGNSW 571
           L  N W
Sbjct: 212 LQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 405 SLCSLPS-----LYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCN 459
            L ++PS        L L  N LS   S +    ++L  L +  N+   LP+     L N
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86

Query: 460 LHSLDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGNLP----DSLGNLLCLE 514
           L +L ++ N +      L    F    +  L  L L  N+L  +LP    DSL     L 
Sbjct: 87  LETLWVTDNKLQ----ALPIGVFD--QLVNLAELRLDRNQL-KSLPPRVFDSLTK---LT 136

Query: 515 YLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG 573
           YL L  N  L SLP  +   L+ L+ L L  N + R+      +L+E   L L  N  + 
Sbjct: 137 YLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 574 VITEKHFRNLSGLDYLTISS 593
            + E  F +L  L  L +  
Sbjct: 196 -VPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 32/175 (18%)

Query: 80  LKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLP-----D 133
            K LDL  +  S  LP      L+ L+ L L+   L+               LP     +
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT--------------LPAGIFKE 83

Query: 134 LSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSIL 190
           L +   L +   KL  +     V ++L +L EL L   QL   +SLP   F + T L+ L
Sbjct: 84  LKNLETLWVTDNKLQALPI--GVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYL 138

Query: 191 ELSYDNFNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
            L Y+   S +P+ +F  +++L  L L ++QL   +P+    K+  L+ L L  N
Sbjct: 139 SLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 42/219 (19%), Positives = 87/219 (39%), Gaps = 33/219 (15%)

Query: 383 VISQKLSVIDLSNNKFFGGILSSLCSL-----PSLYWLRLGGNNLSGE----LSTSLPDC 433
            I   ++ ++LS N         L         ++  L LG N+ S +       +  + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 434 -SRLTALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNV 486
            + +T+L++ GN        +L         N++SL++  N++  +   EL    ++   
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP- 195

Query: 487 STLETLDLASNKLGGNLPDSLGNLLC-----LEYLGLSENSF----LGSLPTSIGNLSHL 537
           +++ +LDL++N LG      L  +       +  L L  N      L +L     +L HL
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 538 RALYLSFNVMSRIISENIGQLSEPY-------MLDLYGN 569
           + +YL ++++  +  E    L   +       ++D  G 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 384 ISQKLSVIDLSNNKF----FGGILSSLCSLP-SLYWLRLGGNNLSGE----LSTSLPDC- 433
           I   ++ ++L  N         +   L S+P S+  L L  N L  +    L+       
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 434 SRLTALDIGGNRF----LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA--CNVS 487
           + + +L++  N      L+       +L +L ++ + Y+ +    KE   A  A   N+ 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 488 TLETLDLASNKLGG----NLPDSLGNLLC-LEYLGLSENSFL-----GSLPTSIGNLSHL 537
            +  +D    ++       + + +  L    +   L     +      +    +     L
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 538 RALYLSFN 545
           R    +  
Sbjct: 345 RESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 34/167 (20%)

Query: 406 LCSLPSLYWLRLGGNNLSGE----LSTSLPDC-SRLTALDIGGNRF-----LQLPSTSMG 455
                 +  L L  NNL       L  +  +  + +T+L++ GN        +L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 456 NLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLL--- 511
              N+ SL++S N ++ +   EL    +A    T+  LDL  N                 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIP-FTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 512 --CLEYLGLSENSF-----------LGSLPTSIGNLSHLRALYLSFN 545
              +  L L  N             L ++P +      + +L L  N
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPAN------VNSLNLRGN 177

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 426 LSTSLPDCSRLTALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTN 479
           +         +T+LD+  N       ++L         ++ SL++S N +  +   EL  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLL-----CLEYLGLSENSFLGSLPTSIGNL 534
             +A   + + +L+L+ N L     D L   L      +  L L  N F     +     
Sbjct: 74  ILAAIP-ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 535 -----SHLRALYLSFN 545
                + + +L L  N
Sbjct: 133 FSNLPASITSLNLRGN 148

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 44/348 (12%), Positives = 96/348 (27%), Gaps = 70/348 (20%)

Query: 209 STLVTLNLRSSQLSGS----IPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNST 264
             + +L+L  + L       + +       ++  L+L+ N    +    +  +     + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 265 LETLETQRMNGTISENIGQLAE--------LVALNLYRNSWKGIITENHFQNL------- 309
           + +L     N    ++  +L +        +  L+L  N      +              
Sbjct: 82  VTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWND----FSSKSSSEFKQAFSNL 136

Query: 310 -TKLNSLYLSSSN------KSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL-----K 357
              + SL L  ++        L+  + +    P ++  + +    L S   + L      
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAA---IPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 358 TQASVFKLTLSNAAISDTIPDWFWGVI---------SQKLSVIDLSNNKF-------FGG 401
             ASV  L LS   +                        +  ++L  N            
Sbjct: 194 IPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGE----LSTSLPDCSRLTALDIGGNRF-----LQLPST 452
           +  SL  L ++Y       N+S E    L  + P+  ++  +D  G        + + + 
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307

Query: 453 SMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
                       +    +    K  TN         L         L 
Sbjct: 308 IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 5e-11
 Identities = 48/331 (14%), Positives = 96/331 (29%), Gaps = 25/331 (7%)

Query: 173 LNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK 232
           L   +    L    +S  E       S+       + TL+ +   +             +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 233 MCNLRRLDLAINGFSGEKEQFIQTLSGC-NNSTLETLETQRMNGTISENIGQLAELVALN 291
             ++   DL     + +  Q    +    ++S  E +  +        +     +L    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 292 LYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAI-NDCQLGS 350
           L  +  K  + ++  ++  +L  L   +    L   +    + P    +  +     L +
Sbjct: 356 L--SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLP 410
             P        +    L   ++             + L    L++      +L  L  L 
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLK-----MEYADVRVL---HLAHKDL--TVLCHLEQLL 463

Query: 411 SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
            +  L L  N L   L  +L     L  L    N    +    + NL  L  L +  N +
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520

Query: 471 TG--EIKELTNAFSACNVSTLETLDLASNKL 499
                I+ L +         L  L+L  N L
Sbjct: 521 QQSAAIQPLVS------CPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 48/269 (17%), Positives = 79/269 (29%), Gaps = 27/269 (10%)

Query: 329 RSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKL 388
           R   +    L   ++ND      F        S  +  L          D       ++L
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT---DEQL 351

Query: 389 SVIDLSNNK--FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
              +LS  K       L S   L  L                 L     + ALD      
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELE---------PENKWCLLTIILLMRALD-----P 397

Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA---FSACNVSTLETLDLASNKLGGNL 503
           L     ++     L ++D        +++              + +  L LA   L   +
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TV 455

Query: 504 PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM 563
              L  LL + +L LS N  L +LP ++  L  L  L  S N +  +  + +  L     
Sbjct: 456 LCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQE 512

Query: 564 LDLYGNSWEGVITEKHFRNLSGLDYLTIS 592
           L L  N  +     +   +   L  L + 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 23/170 (13%)

Query: 51  LKFKGLIDPSARLSSWKSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLS 110
           +            S +             +++L L+    + +   ++  L  + +LDLS
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLS 471

Query: 111 YQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSN 170
           +  L+   +   L  + L  L        L      L  V      V  LP L EL L N
Sbjct: 472 HNRLRA--LPPAL--AALRCL------EVLQASDNALENVDG----VANLPRLQELLLCN 517

Query: 171 CQL-NFPQSLPFLNFTSLSILELSY------DNFNSQIPQWLFNISTLVT 213
            +L       P ++   L +L L        +    ++ + L ++S+++T
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 39/196 (19%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCS------LPSLYWLRLGGNNLSGELSTSLPDCSRLT 437
           +    +++DLS+N      LS L +      L +L+ L L  N+L+   S +      L 
Sbjct: 37  LPSYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91

Query: 438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497
            LD+  N    L      +L  L  L +  NHI   +    NAF   +++ L+ L L+ N
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFE--DMAQLQKLYLSQN 146

Query: 498 KLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ 557
           ++                                  L  L  L LS N + ++   ++ +
Sbjct: 147 QIS----------------RFPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 558 LS--EPYMLDLYGNSW 571
           L       L L+ N  
Sbjct: 186 LPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 24/179 (13%)

Query: 94  LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW 153
           +P ++   S    LDLS+ NL    +  E   + L  L        L L    L+ +++ 
Sbjct: 33  VPQSL--PSYTALLDLSHNNLSR--LRAEWTPTRLTNL------HSLLLSHNHLNFISS- 81

Query: 154 LQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILELSYDNFNSQIPQWLF-NIS 209
            +    +P+L  L LS+  L    +L    F +  +L +L L   N    + +  F +++
Sbjct: 82  -EAFVPVPNLRYLDLSSNHL---HTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMA 136

Query: 210 TLVTLNLRSSQLSGSIPK---FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTL 265
            L  L L  +Q+S   P        K+  L  LDL+ N         +Q L     + L
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 43/242 (17%), Positives = 63/242 (26%), Gaps = 82/242 (33%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
           +    L+L  N+   +  E     LT L+SL LS                          
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-------------------------- 72

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILS 404
              L           +  F   + N                  L  +DLS+N        
Sbjct: 73  HNHLNFI-------SSEAFV-PVPN------------------LRYLDLSSNH------- 99

Query: 405 SLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD 464
            L +L                      D   L  L +  N  + +   +  ++  L  L 
Sbjct: 100 -LHTLDEF----------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 465 ISYNHITGEIKELTNAFSAC-NVSTLETLDLASNKLGGNLPDSLGNL--LCLEYLGLSEN 521
           +S N I+               +  L  LDL+SNKL       L  L       L L  N
Sbjct: 143 LSQNQIS-RFPV--ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

Query: 522 SF 523
             
Sbjct: 200 PL 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 47/186 (25%), Positives = 65/186 (34%), Gaps = 19/186 (10%)

Query: 364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS 423
            L LS   +              +L+ ++L   +     L    +LP L  L L  N L 
Sbjct: 35  ILHLSENLLYTFSLATLMPY--TRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 424 GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTN 479
             L         LT LD+  NR   LP  ++  L  L  L +  N +     G +     
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA 539
                    LE L LA+N L       L  L  L+ L L ENS L ++P        L  
Sbjct: 150 ---------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPF 199

Query: 540 LYLSFN 545
            +L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 43/189 (22%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI 465
           + S   +        NL+  L   LP     T L +  N        ++     L  L++
Sbjct: 9   VASHLEVN---CDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG 525
               +T              +  L TLDL+ N+L  +LP     L  L  L +S N  L 
Sbjct: 63  DRAELTK-----LQVDG--TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR-LT 113

Query: 526 SLPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLS 584
           SLP      L  L+ LYL  N +  +    +    +   L L  N+    +       L 
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172

Query: 585 GLDYLTISS 593
            LD L +  
Sbjct: 173 NLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 60/227 (26%)

Query: 100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD--LSSSRYLHLEGMKLSKVTNWLQVV 157
            +++   ++   +NL                LP      +  LHL    L   +     +
Sbjct: 8   KVASHLEVNCDKRNLTA--------------LPPDLPKDTTILHLSENLLYTFSL--ATL 51

Query: 158 NELPSLVELHLSNCQLNFPQSLP-FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNL 216
                L +L+L   +L     L        L  L+LS+ N    +P     +  L  L++
Sbjct: 52  MPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDV 107

Query: 217 RSSQLSGSIPKFPPG---KMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRM 273
             ++L+      P G    +  L+ L L  N                             
Sbjct: 108 SFNRLT----SLPLGALRGLGELQELYLKGNELK-------------------------- 137

Query: 274 NGTISENI-GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
             T+   +     +L  L+L  N+   +        L  L++L L  
Sbjct: 138 --TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
             +L LSE+         +   + L  L+L    L       +L V        L     
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL------TKLQVDG-----TLPVLGT 81

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILELSYDN 196
           L L   +L  +     +   LP+L  L +S  +L    SLP         L  L L  + 
Sbjct: 82  LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGNE 135

Query: 197 FNSQIPQWLF-NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
             + +P  L      L  L+L ++ L+  +P      + NL  L L  N
Sbjct: 136 LKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 40/162 (24%)

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLI 129
           +     +L  L  LDLS +     LP     L  L  LD+S+ N    ++T         
Sbjct: 70  LQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF-N----RLTS-------- 114

Query: 130 WLPD-----LSSSRYLHLEGMKLSKVTNWLQ-----VVNELPSLVELHLSNCQLNFPQSL 179
            LP      L   + L+L+G       N L+     ++   P L +L L+N  L     L
Sbjct: 115 -LPLGALRGLGELQELYLKG-------NELKTLPPGLLTPTPKLEKLSLANNNL---TEL 163

Query: 180 P---FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRS 218
           P        +L  L L  ++  + IP+  F    L    L  
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 5e-10
 Identities = 98/621 (15%), Positives = 199/621 (32%), Gaps = 163/621 (26%)

Query: 19  IKPLFLTAIGIGSNYDCGNF--SIR--CTEREREALLKFKGLIDPSARL-----SSWKSP 69
           I  +F  A     N+DC +     +   ++ E + ++  K  +  + RL     S  +  
Sbjct: 21  ILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 70  IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSY---QNLKEYQITKELWVS 126
           + +FV  + ++    L     +    P++     ++  D  Y   Q   +Y +++     
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 127 DLI-WLPDLSSSRYLHLEGMKLS-KVTNWL--QVVNELPSLVE-------LHLSNCQLNF 175
            L   L +L  ++ + ++G+  S K   W+   V        +       L+L NC  N 
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNC--NS 194

Query: 176 PQSLPFLNFTSLSILELSYDNFNSQI-PQWLFNISTLVTLNLRSSQLSGSIPKF---PPG 231
           P+++       L +L+        QI P W         + LR   +   + +     P 
Sbjct: 195 PETV-------LEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 232 KMCNLRRLD-----LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAE 286
           + C L  L       A N F+            C     + L T R              
Sbjct: 244 ENC-LLVLLNVQNAKAWNAFNL----------SC-----KILLTTRFKQ----------- 276

Query: 287 LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDC 346
            V   L   +   I  ++H   LT      L    K L          P  L +      
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYL-------DCRPQDLPREV---L 323

Query: 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW-FWG-VISQKLS-VIDLSNN------- 396
                 P          +L++   +I D +  W  W  V   KL+ +I+ S N       
Sbjct: 324 TTN---P---------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 397 -KFFG--GILSSLCSLP----SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQL 449
            K F    +      +P    SL W     + +  ++   +    + + ++         
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW----FDVIKSDVMVVVNKLHKYSLVEKQPKEST-- 425

Query: 450 PSTSMGNLCNLHSLDISYN-HITGEI---KELTNAFSACNVSTLETLDLASNKLGGNLPD 505
                    ++ S+ +     +  E    + + + ++       +T D  S+ L   +P 
Sbjct: 426 --------ISIPSIYLELKVKLENEYALHRSIVDHYNI-----PKTFD--SDDL---IPP 467

Query: 506 SLGNLLCLEYLG--LS--ENSFLGSLPTSIGNLSHLRALYLSFNVMSR-IISENIGQLSE 560
            L       ++G  L   E+            ++  R ++L F  + + I  ++    + 
Sbjct: 468 YLDQYFY-SHIGHHLKNIEHP---------ERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 561 PYMLDLYG--NSWEGVITEKH 579
             +L+       ++  I +  
Sbjct: 518 GSILNTLQQLKFYKPYICDND 538

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 18/185 (9%)

Query: 403 LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHS 462
           +     L +     LG  +++     S  + S +   +   +    L    M    NL  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKE 67

Query: 463 LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS 522
           L +S+N I+ ++  L       +++ LE L +  N+L      +     CL  L L  N 
Sbjct: 68  LHLSHNQIS-DLSPL------KDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNE 117

Query: 523 FLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRN 582
                  S+ +L +L  L +  N +  I    +G LS+  +LDL+GN           + 
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGGLTRLKK 173

Query: 583 LSGLD 587
           ++ +D
Sbjct: 174 VNWID 178

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 35/247 (14%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L      +L + S + +   +   LS +Q  +    N++            L  +   +
Sbjct: 17  GLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-----------SLAGMQFFT 63

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           + + LHL   ++S ++     + +L  L EL ++  +L    +L  +    LS L L  +
Sbjct: 64  NLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNN 116

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
                    L ++  L  L++R+++L  SI     G +  L  LDL  N         I 
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLK-SIVML--GFLSKLEVLDLHGNE--------IT 163

Query: 256 TLSGC-NNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
              G      +  ++       ++E +    EL   N  ++     I+  +  N      
Sbjct: 164 NTGGLTRLKKVNWIDLTG-QKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVD 222

Query: 315 LYLSSSN 321
             +    
Sbjct: 223 GCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 50/271 (18%), Positives = 87/271 (32%), Gaps = 59/271 (21%)

Query: 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
                LA  V  NL + S   +++    + L+ + +    +SN                 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSN----------------- 52

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNN 396
               I          + ++   ++ +L LS+  ISD  P      +    KL  + ++ N
Sbjct: 53  ----IQSL-------AGMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRN 95

Query: 397 KFFGGILSSLCSL--PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSM 454
           +     L +L  +    L  L L  N L    + SL     L  L I  N+   +    +
Sbjct: 96  R-----LKNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--L 146

Query: 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514
           G L  L  LD+  N IT     LT       +  +  +DL   K           L    
Sbjct: 147 GFLSKLEVLDLHGNEIT-NTGGLT------RLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

Query: 515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFN 545
            +   +  ++   P  I N        + + 
Sbjct: 200 TVKDPDGRWIS--PYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 24/196 (12%)

Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-N 183
           ++ +   P L+++   +L    ++ + +      EL  +   +  N  +   QSL  +  
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNI---QSLAGMQF 61

Query: 184 FTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAI 243
           FT+L  L LS+ N  S +   L +++ L  L++  ++L              L RL L  
Sbjct: 62  FTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDN 115

Query: 244 NGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITE 303
           N           +L    N  LE L  +         +G L++L  L+L+ N    I   
Sbjct: 116 NELRD-----TDSLIHLKN--LEILSIRNNKLKSIVMLGFLSKLEVLDLHGN---EITNT 165

Query: 304 NHFQNLTKLNSLYLSS 319
                L K+N + L+ 
Sbjct: 166 GGLTRLKKVNWIDLTG 181

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 48/269 (17%), Positives = 103/269 (38%), Gaps = 32/269 (11%)

Query: 279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
            +    AE +  NL + S    +T      L  ++ +  ++S+               ++
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSD----IKSVQGIQYLPNV 70

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ--KLSVIDLSNN 396
            ++ +N  +L    P  L    ++  L L    + D         +    KL  + L +N
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHN 122

Query: 397 KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
                 ++ L  LP L  L LG N ++ +++  L   ++L  L +  N+   +   +   
Sbjct: 123 GI--SDINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDIVPLA--G 176

Query: 457 LCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL 516
           L  L +L +S NHI+ +++ L        +  L+ L+L S +      +   NL+    +
Sbjct: 177 LTKLQNLYLSKNHIS-DLRALA------GLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 517 GLSENSFLGSLPTSIGNLSHLRALYLSFN 545
             ++ S +   P  I +        + ++
Sbjct: 230 KNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 40/243 (16%), Positives = 86/243 (35%), Gaps = 34/243 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +  +    +L + S +         L+++  +  +  ++K         V  + +LP++ 
Sbjct: 22  AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--------VQGIQYLPNV- 70

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
               L L G KL+ +      +  L +L  L L   ++         +   L  L L ++
Sbjct: 71  --TKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHN 122

Query: 196 NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ 255
             +      L ++  L +L L +++++  I      ++  L  L L  N         I 
Sbjct: 123 GISDING--LVHLPQLESLYLGNNKIT-DITVL--SRLTKLDTLSLEDNQ--------IS 169

Query: 256 TLSGC-NNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
            +      + L+ L   + + +    +  L  L  L L+          NH  NL   N+
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNT 228

Query: 315 LYL 317
           +  
Sbjct: 229 VKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 34/251 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L  +  +  + S    +    I  L N+  L L+   L           +D+  L +L 
Sbjct: 44  ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL-----------TDIKPLANLK 90

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSY 194
           +  +L L+  K+  +++    + +L  L  L L +  ++    +  L +   L  L L  
Sbjct: 91  NLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLG- 142

Query: 195 DNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
           +N  + I   L  ++ L TL+L  +Q+S  I       +  L+ L L+ N  S      +
Sbjct: 143 NNKITDITV-LSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISD-----L 193

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNS 314
           + L+G  N  L+ LE       +++ I   + LV  N  +N+   ++T     +      
Sbjct: 194 RALAGLKN--LDVLELFS-QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

Query: 315 LYLSSSNKSLV 325
             +        
Sbjct: 251 PNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 72  EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWL 131
           + +  L  +  L L+ +  + +    + NL NL +L L    +K+        +S L  L
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKD--------LSSLKDL 111

Query: 132 PDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILE 191
             L   + L LE   +S +      +  LP L  L+L N ++     L  L  T L  L 
Sbjct: 112 KKL---KSLSLEHNGISDING----LVHLPQLESLYLGNNKITDITVLSRL--TKLDTLS 162

Query: 192 LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKE 251
           L  DN  S I   L  ++ L  L L  + +S  +       + NL  L+L       +  
Sbjct: 163 LE-DNQISDIVP-LAGLTKLQNLYLSKNHIS-DLRAL--AGLKNLDVLELFSQECLNKPI 217

Query: 252 QFIQTLSGCNN 262
                L   N 
Sbjct: 218 NHQSNLVVPNT 228

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVSTLETL 492
           T + +  N    +P  +      L  +D+S N I+       + L +         L +L
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---------LNSL 85

Query: 493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRII 551
            L  NK+          L  L+ L L+ N  +  L      +L +L  L L  N +  I 
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 552 SENIGQLSEPYMLDLYGNSWE 572
                 L     + L  N + 
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFI 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT--- 471
           L L    L+     +    ++LT L++  N+   L +    +L  L +L ++ N +    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 472 -GEIKELTNAFSACNVSTLETLDLASNKLGGNLP----DSLGNLLCLEYLGLSENSFLGS 526
            G    LT          L+ L L  N+L   LP    D L     L+ L L+ N  L S
Sbjct: 100 LGVFDHLTQ---------LDKLYLGGNQLKS-LPSGVFDRLTK---LKELRLNTNQ-LQS 145

Query: 527 LPTSI-GNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
           +P      L++L+ L LS N +  +      +L +   + L+GN +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 33/168 (19%)

Query: 392 DLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP-----DCSRLTALDIGGNRF 446
           DL +        ++   L  L WL L  N L      +L      D + L  L +  N+ 
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQL 95

Query: 447 LQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVSTLETLDLASNKLGGN 502
             LP     +L  L  L +  N +     G    LT          L+ L L +N+L  +
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK---------LKELRLNTNQL-QS 145

Query: 503 LP----DSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFN 545
           +P    D L N   L+ L LS N  L S+P      L  L+ + L  N
Sbjct: 146 IPAGAFDKLTN---LQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 414 WLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE 473
            L      +  ++  +L        L +  N   ++  +S+  + NL  L +  N I  +
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-K 84

Query: 474 IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP--TSI 531
           I+ L          TLE L ++ N++  +L   +  L+ L  L +S N  + +      +
Sbjct: 85  IENLDA-----VADTLEELWISYNQI-ASL-SGIEKLVNLRVLYMSNN-KITNWGEIDKL 136

Query: 532 GNLSHLRALYLSFNVMSRIISEN 554
             L  L  L L+ N +     EN
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 14/143 (9%)

Query: 382 GVISQKLSVIDLSNN-KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD 440
            V++ +   ++L         + ++L +L +   L L  NN+  ++S SL     L  L 
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILS 76

Query: 441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG 500
           +G N   ++ +        L  L ISYN I   +  +    +      L  L +++NK+ 
Sbjct: 77  LGRNLIKKIENLD-AVADTLEELWISYNQIA-SLSGIEKLVN------LRVLYMSNNKI- 127

Query: 501 GNLPD--SLGNLLCLEYLGLSEN 521
            N  +   L  L  LE L L+ N
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGN 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 22/143 (15%)

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVSTLETL 492
             L +  N+  +L      +L NL  L +  N +     G    LT          L  L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---------LTVL 93

Query: 493 DLASNKLGGNLP----DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMS 548
           DL +N+L   LP    D L +   L+ L +  N  L  LP  I  L+HL  L L  N + 
Sbjct: 94  DLGTNQL-TVLPSAVFDRLVH---LKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK 148

Query: 549 RIISENIGQLSEPYMLDLYGNSW 571
            I      +LS      L+GN W
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGNPW 171

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 39/201 (19%)

Query: 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT---ALDIG 442
             +  I  +N+      +  +  LP++ +L LGGN L       +     LT    L + 
Sbjct: 41  NSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILT 93

Query: 443 GNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVSTLETLDLASNK 498
           GN+   LP+     L NL  L +  N +     G   +LTN         L  L+LA N+
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---------LTYLNLAHNQ 144

Query: 499 LGGNLP----DSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRI--- 550
           L  +LP    D L N   L  L LS N  L SLP  +   L+ L+ L L  N +  +   
Sbjct: 145 L-QSLPKGVFDKLTN---LTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199

Query: 551 ISENIGQLSEPYMLDLYGNSW 571
           + + +  L     + L+ N W
Sbjct: 200 VFDRLTSLQ---YIWLHDNPW 217

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 24/173 (13%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
            L  +  +  + S    +    I  L N++YL L   N    ++   +         +L+
Sbjct: 39  ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLAL-GGN----KLHD-ISALK-----ELT 85

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP---FLNFTSLSILEL 192
           +  YL L G +L  + N   V ++L +L EL L   QL   QSLP   F   T+L+ L L
Sbjct: 86  NLTYLILTGNQLQSLPN--GVFDKLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNL 140

Query: 193 SYDNFNSQIPQWLFNIST-LVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
           +++   S +P+ +F+  T L  L+L  +QL  S+P+    K+  L+ L L  N
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLC-----SLPSLYWLRLGGNNLSGELSTSLPDC-SRLT 437
           +   L  ++L+  +      + +         +L  + L    L      +L     R  
Sbjct: 70  VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 438 ALDIGGNRF-----LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLET 491
            L +  N         L    + + C + +L +S N +T   +  L    +    +++  
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN--TSVTH 187

Query: 492 LDLASNKLGGN----LPDSLGNLLCLEYLGLSENSF----LGSLPTSIGNLSHLRALYLS 543
           L L    LG      L   L     L+ L ++ N        +L  +      L  L+L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 544 FN 545
           FN
Sbjct: 248 FN 249

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 131 LPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSIL 190
           LP   +   L++E  +  +     + +  L  L  L +    L F     F     LS L
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 191 ELSYDNFNSQIPQWLFNISTLVTLNLRSSQL 221
            LS+ N    +        +L  L L  + L
Sbjct: 86  NLSF-NALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 95  PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL 154
             ++    NL  L +  Q          L   +L  L  L   R L +    L  V    
Sbjct: 24  LHHLPGAENLTELYIENQQ--------HLQHLELRDLRGLGELRNLTIVKSGLRFVAP-- 73

Query: 155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
              +  P L  L+LS   L   +SL +     LS+ EL    
Sbjct: 74  DAFHFTPRLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGEL-STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL 460
            L  L    +L  L +        L    L     L  L I  +    +   +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 461 HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL 499
             L++S+N +   +          +   L+ L L+ N L
Sbjct: 83  SRLNLSFNALE-SLSW--KTVQGLS---LQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC----NLHSLDISYNHI 470
           ++L    +  E +    +  R   LD+ G +        + NL        ++D S N  
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYK-----IPVIENLGATLDQFDAIDFSDN-- 52

Query: 471 TGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN--SFLGSLP 528
             EI++L   F       L+TL + +N++          L  L  L L+ N    LG L 
Sbjct: 53  --EIRKLDG-FPLLRR--LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL- 106

Query: 529 TSIGNLSHLRALYLSFN 545
             + +L  L  L +  N
Sbjct: 107 DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
           +   +DL   K    I +   +L     +    N +  +L    P   RL  L +  NR 
Sbjct: 20  RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRI 76

Query: 447 LQLPSTSMGNLCNLHSLDISYNHIT--GEIKELTNAFSACNVSTLETLDLASN 497
            ++       L +L  L ++ N +   G++  L       ++ +L  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLA------SLKSLTYLCILRN 123

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 5e-06
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 19/210 (9%)

Query: 303 ENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPF-SLRQMAINDCQLGSAFPSWLKTQAS 361
           +  F +   L    +    + + +  + D  P   ++  +     +  +      K + +
Sbjct: 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN 194

Query: 362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDL---SNNKFFGGILSSLCSL------PSL 412
           +  L + +  + D++ +   G     L  + L     +  F G ++    L      P+L
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 413 YWLRLGGNNLSGELSTSL---PDCSRLTALDIGGNRF----LQLPSTSMGNLCNLHSLDI 465
            WL +        +           +L  +DI          +L    +  + +L  +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 466 SYNHITGE-IKELTNAFSA-CNVSTLETLD 493
            YN+++ E  KEL  +     +VS  +  D
Sbjct: 315 KYNYLSDEMKKELQKSLPMKIDVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 7e-06
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 21/197 (10%)

Query: 337 SLRQMAINDCQLGSAFPSWLK----TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVID 392
               +   D        SW++    +        L+N  I  T            L  ++
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 393 LSNNKFFGGILSSLCS--LPSLYWLRL--GGNNLSGELST-------SLPDCSRLTALDI 441
           + +      ++  +    LP+L  L L  G  +   +          S      L  L I
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 442 GGNRF---LQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASN 497
                   +         L  L ++DIS   +T E  + L +         L+ +++  N
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI--KHLKFINMKYN 317

Query: 498 KLGGNLPDSLGNLLCLE 514
            L   +   L   L ++
Sbjct: 318 YLSDEMKKELQKSLPMK 334

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF--LQLPSTSMGNLCNLHSLDIS 466
           L ++  L       +  LS        L +L+I         +      +L NL  L + 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 467 YNHIT----GEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGN---LLCLEYLGLS 519
                    G++      FS      L+ L +   +    + +       L  LE + +S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 520 ENSF----LGSLPTSIGNLSHLRALYLSFNVMS 548
                      L   +  + HL+ + + +N +S
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 23/144 (15%)

Query: 437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVSTLETL 492
           T LD+  N    LP+     L +L  L +  N +     G   +LT+         L  L
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS---------LTYL 81

Query: 493 DLASNKLGGNLP----DSLGNLLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVM 547
           +L++N+L  +LP    D L     L+ L L+ N  L SLP  +   L+ L+ L L  N +
Sbjct: 82  NLSTNQL-QSLPNGVFDKLTQ---LKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 548 SRIISENIGQLSEPYMLDLYGNSW 571
             +      +L+    + L+ N W
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT--- 471
           L L  N+L    +    + + LT L +GGN+   LP+     L +L  L++S N +    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 472 -GEIKELTNAFSACNVSTLETLDLASNKLGGNLP----DSLGNLLCLEYLGLSENSFLGS 526
            G   +LT          L+ L L +N+L  +LP    D L     L+ L L +N  L S
Sbjct: 93  NGVFDKLTQ---------LKELALNTNQL-QSLPDGVFDKLTQ---LKDLRLYQNQ-LKS 138

Query: 527 LPTSI-GNLSHLRALYLSFN 545
           +P  +   L+ L+ ++L  N
Sbjct: 139 VPDGVFDRLTSLQYIWLHDN 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445
             L  + L N       +S+L  LP L  L L  N + G L         LT L++ GN+
Sbjct: 49  VNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 446 FLQLPS-TSMGNLCNLHSLDISYNHIT 471
              + +   +  L  L SLD+    +T
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE 514
               NL  L +    +   +  L        +  L+ L+L+ N++ G L      L  L 
Sbjct: 46  AEFVNLEFLSLINVGLI-SVSNLPK------LPKLKKLELSENRIFGGLDMLAEKLPNLT 98

Query: 515 YLGLSENSF--LGSLPTSIGNLSHLRALYLSFN 545
           +L LS N    + +L   +  L  L++L L   
Sbjct: 99  HLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR 445
           ++L  +   N       +++L  L  L  L L  N +SG L      C  LT L++ GN+
Sbjct: 42  EELEFLSTINVGL--TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 446 FLQLPS-TSMGNLCNLHSLDISYNHIT 471
              L +   +  L NL SLD+    +T
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 432 DCSRLTALDIGGNRFLQLPSTSMG-NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLE 490
             S +  L +  +R  +     +      L  L          +  + N     N   L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIAN-LPKLN--KLK 67

Query: 491 TLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF--LGSLPTSIGNLSHLRALYLSFN 545
            L+L+ N++ G L         L +L LS N    L ++   +  L +L++L L   
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 68/510 (13%), Positives = 142/510 (27%), Gaps = 90/510 (17%)

Query: 41  RCTEREREALLKFKGLIDPSARLSSWKSP----IPEFVYSLKKLKLLDLSESSFSGMLPP 96
           R  +     L       D +     W       I     S   L+ + L     +     
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 97  NIG-NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT-NWL 154
            I  +  N + L LS         + +   +      +L   + L L    +  V+ +WL
Sbjct: 124 LIAKSFKNFKVLVLSS----CEGFSTDGLAAIAATCRNL---KELDLRESDVDDVSGHWL 176

Query: 155 QVVNE-LPSLVELHLSNCQLNF-PQSLPFL--NFTSLSILELSYDNFNSQIPQWLFNIST 210
               +   SLV L++S         +L  L     +L  L+L+      ++   L     
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 211 LVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQF--IQTLSGCNNSTLETL 268
           L  L                             +G S        ++ LSG  ++    L
Sbjct: 237 LEELGTGG---------------YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 269 ETQRMNGTISENIGQLAELVALNLYRNSWKGIITENH---FQNLTKLNSLYLSS--SNKS 323
                           + L  LNL   S+  + + +         KL  L++     +  
Sbjct: 282 P---------AVYSVCSRLTTLNL---SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 324 LVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGV 383
           L     +       LR++ +   +     P+   T+  +  +++                
Sbjct: 330 LEVLAST----CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG--------------- 370

Query: 384 ISQKLSVIDLSNNKF-FGGILSSLCSLPSLYWLRLGGNNLSGELSTS-----------LP 431
              KL  +     +     +++   + P++   RL           +           + 
Sbjct: 371 -CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 432 DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLE 490
            C  L  L + G    ++          +  L +++   +   +  +          +L 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-----LSGCDSLR 484

Query: 491 TLDLASNKLGGN-LPDSLGNLLCLEYLGLS 519
            L++     G   L  +   L  +  L +S
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMS 514

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCS------LPSLYWLRLGGNNLSGELSTSLPD----- 432
           I Q  + + L+NN+      + L +      LP L  +    N +     T + +     
Sbjct: 30  IPQYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKI-----TDIEEGAFEG 79

Query: 433 CSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT----GEIKELTNAFSACNVST 488
            S +  + +  NR   +       L +L +L +  N IT         L++         
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS--------- 130

Query: 489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF 523
           +  L L  N++    P +   L  L  L L  N F
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	636
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-62  Score=554.15  Aligned_cols=505  Identities=26%  Similarity=0.324  Sum_probs=396.2

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCc--cccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514           72 EFVYSLKKLKLLDLSESSFSGMLPP--NIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK  149 (636)
Q Consensus        72 ~~~~~l~~L~~L~Ls~~~i~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  149 (636)
                      +.|.++++|++|+|++|.++|.+|.  .++++++|++|++++|.+++..+..        .+.++++|++|++++|.+++
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~  165 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS--------GGLKLNSLEVLDLSANSISG  165 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC--------SCCCCTTCSEEECCSSCCEE
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH--------HhccCCCCCEEECCCCccCC
Confidence            5777888999999999998888887  8888999999999988776533221        02344445555554444443


Q ss_pred             CCChh-----------------------hhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCcccc
Q 037514          150 VTNWL-----------------------QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF  206 (636)
Q Consensus       150 ~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~  206 (636)
                      .....                       ..+..+++|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|..+.
T Consensus       166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred             cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence            31100                       1125677788888888887776666 78888888888888888877888888


Q ss_pred             CCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhcc-ccCCcccchhhc--cCcCcccccccccC
Q 037514          207 NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTL-SGCNNSTLETLE--TQRMNGTISENIGQ  283 (636)
Q Consensus       207 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~~~~~~L~~L~--~~~~~~~~~~~l~~  283 (636)
                      ++++|++|++++|.+.+.+|.   ..+++|++|++++|.+.+.+|..+... +     +|+.|+  .+++.+.+|..++.
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACD-----TLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCT-----TCSEEECCSSEEEECCCGGGGG
T ss_pred             cCCCCCEEECCCCcccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcC-----cCCEEECcCCcCCCccchHHhc
Confidence            888888888888888766553   266677777777777776666655443 4     566665  55666667777777


Q ss_pred             CCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCC-----------------------ccEEecCCCCCC--CCCc
Q 037514          284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNK-----------------------SLVFTMRSDWIP--PFSL  338 (636)
Q Consensus       284 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~-----------------------~~~~~~~~~~~~--~~~L  338 (636)
                      +++|++|++++|++.+.+|...+.++++|++|++++|.+                       ...+..+..+..  +++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            777777777777776666665566666666666666621                       222233333333  5678


Q ss_pred             cEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEcc
Q 037514          339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG  418 (636)
Q Consensus       339 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~  418 (636)
                      ++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+  ++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            888888888888888889999999999999999999999888888  899999999999998899999999999999999


Q ss_pred             CCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc
Q 037514          419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK  498 (636)
Q Consensus       419 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  498 (636)
                      +|++++.+|..+..+++|++|++++|++++..|..++.+++|++|++++|++++.+|..+..+     ++|++|++++|+
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~  549 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWLDLNTNL  549 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-----TTCCEEECCSSE
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-----CCCCEEECCCCc
Confidence            999998899999999999999999999998888889999999999999999998888876643     677999999999


Q ss_pred             CCCCCchhh----------------------------------------------------------------------c
Q 037514          499 LGGNLPDSL----------------------------------------------------------------------G  508 (636)
Q Consensus       499 l~~~~~~~l----------------------------------------------------------------------~  508 (636)
                      +++.+|..+                                                                      +
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            887777543                                                                      3


Q ss_pred             CCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCe
Q 037514          509 NLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDY  588 (636)
Q Consensus       509 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  588 (636)
                      .+++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++|.+|.. +..+++|++
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~  708 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTE  708 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCE
Confidence            3567899999999999999999999999999999999999999999999999999999999999999986 889999999


Q ss_pred             eeCCCCCCCcccc
Q 037514          589 LTISSSNSSLVFN  601 (636)
Q Consensus       589 L~ls~n~~~~~~~  601 (636)
                      |++++|+++...+
T Consensus       709 L~ls~N~l~g~iP  721 (768)
T 3rgz_A          709 IDLSNNNLSGPIP  721 (768)
T ss_dssp             EECCSSEEEEECC
T ss_pred             EECcCCcccccCC
Confidence            9999997764443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-60  Score=536.95  Aligned_cols=510  Identities=24%  Similarity=0.321  Sum_probs=412.2

Q ss_pred             cccCc--cccCCCCCCEEeCCCCCCCCCCCccc-cCCCCCCEEeCcCCCCCccccccc--c------c--------cccc
Q 037514           68 SPIPE--FVYSLKKLKLLDLSESSFSGMLPPNI-GNLSNLQYLDLSYQNLKEYQITKE--L------W--------VSDL  128 (636)
Q Consensus        68 ~~~p~--~~~~l~~L~~L~Ls~~~i~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~--~------~--------~~~~  128 (636)
                      +.+|.  .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+++..+...  +      .        ..+.
T Consensus       114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  193 (768)
T 3rgz_A          114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD  193 (768)
T ss_dssp             EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred             CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence            55777  89999999999999999988888776 788999999999988876543210  0      0        0001


Q ss_pred             ccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCC
Q 037514          129 IWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNI  208 (636)
Q Consensus       129 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l  208 (636)
                      ..+..+++|++|++++|.+++...   .++++++|++|++++|.+.+..+..+.++++|++|++++|.+.+.+|..  .+
T Consensus       194 ~~~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l  268 (768)
T 3rgz_A          194 VDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL  268 (768)
T ss_dssp             CBCTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CC
T ss_pred             CCcccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--cc
Confidence            124677788888888888877532   3778888888888888888777777888888888888888877766653  66


Q ss_pred             CCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCccccccc-ccCCC
Q 037514          209 STLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISEN-IGQLA  285 (636)
Q Consensus       209 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~-l~~l~  285 (636)
                      ++|++|++++|.+++.+|......+++|++|++++|.+.+..|..+..++     +|+.|+  .+.+.|.+|.. +..++
T Consensus       269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~ip~~~l~~l~  343 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMR  343 (768)
T ss_dssp             TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-----TCCEEECCSSEEEEECCHHHHTTCT
T ss_pred             CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC-----CccEEECCCCcccCcCCHHHHhcCC
Confidence            77777777777777666653333346777777777777666666666665     555544  44444444443 44555


Q ss_pred             CCCEEEccCCc-------------------------CccccChhhhcC--CCCCCEEEccCCCCccEEecCCCCCCCCCc
Q 037514          286 ELVALNLYRNS-------------------------WKGIITENHFQN--LTKLNSLYLSSSNKSLVFTMRSDWIPPFSL  338 (636)
Q Consensus       286 ~L~~L~l~~n~-------------------------~~~~i~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L  338 (636)
                      +|++|++++|+                         +.+.++. .+..  +++|++|++++|  ...+..+..+..+++|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTC
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCCC--ccccccCHHHhcCCCC
Confidence            55555555554                         4444443 2333  678999999999  7777888899999999


Q ss_pred             cEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEcc
Q 037514          339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG  418 (636)
Q Consensus       339 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~  418 (636)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+  ++|++|++++|++++..|..+..+++|++|+++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            999999999999999999999999999999999999999999888  999999999999999999999999999999999


Q ss_pred             CCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhc---------------
Q 037514          419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA---------------  483 (636)
Q Consensus       419 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---------------  483 (636)
                      +|++++.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+.....               
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence            99999999999999999999999999999988889999999999999999999888876543110               


Q ss_pred             --------------------------------------------------CCCCcccEEEcccCcCCCCCchhhcCCCCC
Q 037514          484 --------------------------------------------------CNVSTLETLDLASNKLGGNLPDSLGNLLCL  513 (636)
Q Consensus       484 --------------------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  513 (636)
                                                                        ..+++|++|++++|++++.+|..++++++|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                                                              113678999999999999999999999999


Q ss_pred             CEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCC
Q 037514          514 EYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS  593 (636)
Q Consensus       514 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~  593 (636)
                      +.|+|++|++++.+|..++++++|+.|||++|++++.+|..+..++.|++|++++|+++|.+|+.  ..+.++....+.+
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~g  736 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQFETFPPAKFLN  736 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS--SSGGGSCGGGGCS
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc--hhhccCCHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999985  2445566677788


Q ss_pred             C
Q 037514          594 S  594 (636)
Q Consensus       594 n  594 (636)
                      |
T Consensus       737 N  737 (768)
T 3rgz_A          737 N  737 (768)
T ss_dssp             C
T ss_pred             C
Confidence            8

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.5e-55  Score=488.29  Aligned_cols=505  Identities=21%  Similarity=0.195  Sum_probs=337.2

Q ss_pred             CccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC
Q 037514           71 PEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV  150 (636)
Q Consensus        71 p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  150 (636)
                      +..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++++...         |.++++|++|++++|.++.+
T Consensus        42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~l~~L~~L~L~~n~l~~~  112 (680)
T 1ziw_A           42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT---------FAFCTNLTELHLMSNSIQKI  112 (680)
T ss_dssp             GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCC
T ss_pred             HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh---------hccCCCCCEEECCCCccCcc
Confidence            346888888888888888888888888888888888888888888776532         78888888888888888877


Q ss_pred             CChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCcccc--CCCCCCEEeCcCCcCCCCCCCC
Q 037514          151 TNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLF--NISTLVTLNLRSSQLSGSIPKF  228 (636)
Q Consensus       151 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~  228 (636)
                      +.  ..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..|. 
T Consensus       113 ~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-  189 (680)
T 1ziw_A          113 KN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-  189 (680)
T ss_dssp             CS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-
T ss_pred             Ch--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-
Confidence            43  5688888888888888888888888888888888888888888886666554  557888888888888754432 


Q ss_pred             CCCC---------------------------CCCCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCcccccc
Q 037514          229 PPGK---------------------------MCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISE  279 (636)
Q Consensus       229 ~~~~---------------------------l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~  279 (636)
                      .+..                           .++|+.|++++|.+.+..+..+..++   ..+|+.|+  .+++.+..|.
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~  266 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGND  266 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcc
Confidence            2222                           25677788888888777777776654   11377776  6677777788


Q ss_pred             cccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccE-------EecCCCCCCCCCccEEEccCCCCCcCC
Q 037514          280 NIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLV-------FTMRSDWIPPFSLRQMAINDCQLGSAF  352 (636)
Q Consensus       280 ~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~  352 (636)
                      .++.+++|++|++++|++.+..+. .|..+++|+.|++++|.....       ......+..+++|++|++++|.+.+..
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~  345 (680)
T 1ziw_A          267 SFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK  345 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred             cccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence            888889999999999988875554 788888888888887632110       111225667888999999999988888


Q ss_pred             ChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccC-CC
Q 037514          353 PSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELS-TS  429 (636)
Q Consensus       353 ~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~  429 (636)
                      +..+..+++|++|++++|.+...  ....+.....++|+.|++++|++++..+..+..+++|++|++++|.+.+.++ ..
T Consensus       346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  425 (680)
T 1ziw_A          346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE  425 (680)
T ss_dssp             TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred             hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence            88888888888888888764322  2222322211467777777777776666667777777777777777765444 45


Q ss_pred             CCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC--CchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514          430 LPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT--GEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL  507 (636)
Q Consensus       430 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  507 (636)
                      +.++++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+.     .+++|++|++++|++++..+..+
T Consensus       426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-----~l~~L~~L~Ls~N~l~~i~~~~~  500 (680)
T 1ziw_A          426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-----PLRNLTILDLSNNNIANINDDML  500 (680)
T ss_dssp             GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-----TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-----cCCCCCEEECCCCCCCcCChhhh
Confidence            666667777777777666555555555555555555555543  22232222     12444555555555554444445


Q ss_pred             cCCCCCCEEeCcCCccCCccC--------hhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhh
Q 037514          508 GNLLCLEYLGLSENSFLGSLP--------TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKH  579 (636)
Q Consensus       508 ~~l~~L~~L~Ls~n~~~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  579 (636)
                      .++++|++|++++|++.+..+        ..+.++++|++|++++|+++.+.+..|.++++|+.|++++|+++ .+|...
T Consensus       501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~  579 (680)
T 1ziw_A          501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASV  579 (680)
T ss_dssp             TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhH
Confidence            555555555555555543211        12445555555555555555444444555555555555555555 344444


Q ss_pred             hcCCCCCCeeeCCCCCCC
Q 037514          580 FRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       580 ~~~l~~L~~L~ls~n~~~  597 (636)
                      |..+++|+.|++++|.++
T Consensus       580 ~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TTTCTTCCEEECTTSCCC
T ss_pred             hCCCCCCCEEECCCCcCC
Confidence            555555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-55  Score=480.09  Aligned_cols=509  Identities=18%  Similarity=0.196  Sum_probs=390.4

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514           70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK  149 (636)
Q Consensus        70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  149 (636)
                      +|..+..  ++++|++++|.+++..|.+|+++++|++|++++|.++++.+..         |.++++|++|++++|.++.
T Consensus        27 iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           27 IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT---------FQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCSE
T ss_pred             CcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh---------ccCccccCeeeCCCCcccc
Confidence            4444432  6677777777777666777777777777777777776654432         6777777777777777766


Q ss_pred             CCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC
Q 037514          150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP  229 (636)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  229 (636)
                      .+  +..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..| ..
T Consensus        96 ~~--~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~  172 (606)
T 3t6q_A           96 MA--ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-ED  172 (606)
T ss_dssp             EC--TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HH
T ss_pred             cC--hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hh
Confidence            62  2467777777777777777776666667777777777777777776333344447777777777777764322 12


Q ss_pred             CCCCCCCC--EEEcccccCccccchhhhcc-----------------ccCCcccchhhc--------cCcCccccccccc
Q 037514          230 PGKMCNLR--RLDLAINGFSGEKEQFIQTL-----------------SGCNNSTLETLE--------TQRMNGTISENIG  282 (636)
Q Consensus       230 ~~~l~~L~--~L~L~~n~~~~~~~~~l~~l-----------------~~~~~~~L~~L~--------~~~~~~~~~~~l~  282 (636)
                      ++.+++|+  .|++++|.+.+..+..+...                 .++....++.+.        ...+.+..+..+.
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~  252 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC  252 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred             hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence            56666777  67777777776666554321                 000011111111        1112222222222


Q ss_pred             CCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCc
Q 037514          283 QLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASV  362 (636)
Q Consensus       283 ~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  362 (636)
                      .. +|+.|++++|.+.+ ++...|..+++|++|++++|.+.   .++..+..+++|++|++++|.+.+..|..+..+++|
T Consensus       253 ~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  327 (606)
T 3t6q_A          253 EM-SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL  327 (606)
T ss_dssp             GS-EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS---CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred             cC-ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC---CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence            22 78999999999988 55558999999999999999543   567778889999999999999998888899999999


Q ss_pred             ceeccccccCCCcchh-hHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514          363 FKLTLSNAAISDTIPD-WFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL  439 (636)
Q Consensus       363 ~~L~L~~n~~~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  439 (636)
                      ++|++++|.+.+..+. .+..+  ++|++|++++|.+.+..  +..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          328 THLSIKGNTKRLELGTGCLENL--ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             SEEECCSCSSCCBCCSSTTTTC--TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             CEEECCCCCcccccchhhhhcc--CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            9999999999866654 46666  89999999999998765  7788999999999999999998889999999999999


Q ss_pred             ECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC---CchhhcCCCCCCE
Q 037514          440 DIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN---LPDSLGNLLCLEY  515 (636)
Q Consensus       440 ~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~  515 (636)
                      ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..     +++|++|++++|++++.   .+..+..+++|+.
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-----LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-----CCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            999999987654 44889999999999999998877776553     47789999999999862   3367899999999


Q ss_pred             EeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCC
Q 037514          516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       516 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      |++++|++.+..|..|..+++|++|++++|++++..|..+..++.| +|++++|++++ ++...+..+++|+.|++++|+
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCC
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCC
Confidence            9999999998889999999999999999999999999999999999 99999999995 566668899999999999995


Q ss_pred             CCccccccccccc
Q 037514          596 SSLVFNIRHDWIA  608 (636)
Q Consensus       596 ~~~~~~~~~~~~~  608 (636)
                        ..|+|...|+.
T Consensus       559 --~~c~c~~~~~~  569 (606)
T 3t6q_A          559 --LDCTCSNIYFL  569 (606)
T ss_dssp             --EECSGGGHHHH
T ss_pred             --ccccCCcHHHH
Confidence              55566544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-52  Score=468.08  Aligned_cols=509  Identities=20%  Similarity=0.247  Sum_probs=427.5

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL  147 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  147 (636)
                      ..+|..+.  +++++|++++|.+++..+..|+++++|++|++++|.++++.+..         +.++++|++|++++|.+
T Consensus        17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A           17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------CQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH---------HHHCTTCCEEECCSSCC
T ss_pred             cccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH---------HhcccCcCEEECCCCcc
Confidence            34666554  69999999999999888888999999999999999998876543         78899999999999999


Q ss_pred             CCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      +.++.  ..|+++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+.
T Consensus        86 ~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           86 SQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCT--TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             CccCh--hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            98854  5799999999999999999998889999999999999999999998888999999999999999999854332


Q ss_pred             C-CCCCCCCCCEEEcccccCccccchhhhccccCC----------------------cccchhhc--cCcCccccccccc
Q 037514          228 F-PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCN----------------------NSTLETLE--TQRMNGTISENIG  282 (636)
Q Consensus       228 ~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~----------------------~~~L~~L~--~~~~~~~~~~~l~  282 (636)
                      . ....+++|++|++++|.+.+..+..+..++.+.                      ..+++.|+  .+.+.+..|..+.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            1 134568999999999999998888777665221                      12444444  5667777788887


Q ss_pred             CCCC--CCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCc-----CCC--
Q 037514          283 QLAE--LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGS-----AFP--  353 (636)
Q Consensus       283 ~l~~--L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~--  353 (636)
                      .++.  |++|++++|++.+..+. .|..+++|++|++++|  ......+..+..+.+|++|++++|...+     .+|  
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYN--NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSC--CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             ccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCC--ccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence            7754  99999999999885444 7899999999999999  6667777888899999999999876543     223  


Q ss_pred             --hhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc--CCcccCC--CCCCcEEEccCCcCCcccC
Q 037514          354 --SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG--ILSSLCS--LPSLYWLRLGGNNLSGELS  427 (636)
Q Consensus       354 --~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~--l~~L~~L~L~~n~l~~~~~  427 (636)
                        ..+..+++|++|++++|.+.+..+.++..+  ++|++|++++|.+...  ....+..  .++|+.|++++|++.+..+
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~  398 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES  398 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC--TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccc--cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence              267889999999999999999888888887  8999999999975432  2222332  3689999999999998888


Q ss_pred             CCCCCCCCCCEEECCCCCCCC-CcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC--CCCc
Q 037514          428 TSLPDCSRLTALDIGGNRFLQ-LPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG--GNLP  504 (636)
Q Consensus       428 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~  504 (636)
                      ..+..+++|++|++++|.+.+ .++..+..+++|++|++++|++.+..+..+.     .+++|++|++++|.+.  +..|
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-----LVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-----TCTTCCEEECTTSCCBCTTCSS
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-----cCcccccchhccccccccccCC
Confidence            999999999999999999986 4446789999999999999998876666554     3478899999999986  5688


Q ss_pred             hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc--------ccccCCCCCCEEECcCCcceeecC
Q 037514          505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS--------ENIGQLSEPYMLDLYGNSWEGVIT  576 (636)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~  576 (636)
                      ..+..+++|+.|++++|++.+..+..|.++++|++|++++|++++..+        ..+..+++|++|++++|++. .+|
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~  552 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIP  552 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCC
Confidence            899999999999999999998888889999999999999999987633        23788999999999999998 689


Q ss_pred             hhhhcCCCCCCeeeCCCCCCCccc
Q 037514          577 EKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       577 ~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      .+.|..+++|++|++++|.++...
T Consensus       553 ~~~~~~l~~L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          553 VEVFKDLFELKIIDLGLNNLNTLP  576 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             HHHcccccCcceeECCCCCCCcCC
Confidence            888999999999999999887544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-53  Score=467.62  Aligned_cols=498  Identities=22%  Similarity=0.250  Sum_probs=390.1

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|++++|.+++..+..|+++++|++|++++|.++++++..         |.++++|++|++++|.++
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~---------~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA---------WHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH---------hhchhhcCEeECCCCccc
Confidence            3554443  57888888888888777777888888888888888887765432         778888888888888887


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      ..+  +..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..|.
T Consensus        94 ~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           94 SFS--PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCC--TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             ccC--hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            772  3577888888888888888877777778888888888888888875 4677888888888888888887754332


Q ss_pred             CCCCCCCCC----CEEEcccccCccccchhhhccccCCcccchhhc--cCcCc-ccccccccCCCCCCEEEc--------
Q 037514          228 FPPGKMCNL----RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMN-GTISENIGQLAELVALNL--------  292 (636)
Q Consensus       228 ~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~-~~~~~~l~~l~~L~~L~l--------  292 (636)
                       .++.+++|    ++|++++|.+.+..+..+...      +|+.|+  .+.+. +..|..+.+++.|+.+++        
T Consensus       172 -~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          172 -DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             -TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             -hhhhhhccccccceeeccCCCcceeCcccccCc------eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence             34444443    378888887776555444322      455554  44443 334555555655555544        


Q ss_pred             -------------------------cCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCC
Q 037514          293 -------------------------YRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQ  347 (636)
Q Consensus       293 -------------------------~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  347 (636)
                                               ..+.+.+.++.  +..+++|+.|++++|...   ..+ .+..+++|++|++++|.
T Consensus       245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~---~l~-~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK---YLE-DVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC---CCC-CCCTTCCCSEEEEESCC
T ss_pred             CcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccch---hhh-hccccccCCEEEccccc
Confidence                                     55566665554  888999999999998432   233 67788899999999999


Q ss_pred             CCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc--CCcccCCCCCCcEEEccCCcCCcc
Q 037514          348 LGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG--ILSSLCSLPSLYWLRLGGNNLSGE  425 (636)
Q Consensus       348 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~  425 (636)
                      + +.+|. + .+++|++|++++|...+..  .+..+  ++|++|++++|.+++.  .+..+..+++|++|++++|.+.+ 
T Consensus       319 l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-  390 (606)
T 3vq2_A          319 L-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-  390 (606)
T ss_dssp             C-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCC--TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-
T ss_pred             C-ccccc-C-CCCccceeeccCCcCccch--hhccC--CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-
Confidence            9 67774 4 8999999999999665444  34444  8999999999999766  37788899999999999999874 


Q ss_pred             cCCCCCCCCCCCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC-CC
Q 037514          426 LSTSLPDCSRLTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG-NL  503 (636)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~  503 (636)
                      +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|..+..     +++|++|++++|++++ ..
T Consensus       391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~  465 (606)
T 3vq2_A          391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-----LTSLNTLKMAGNSFKDNTL  465 (606)
T ss_dssp             ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEE
T ss_pred             chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----CCCCCEEECCCCcCCCcch
Confidence            66889999999999999999998876 67899999999999999999877776543     4778999999999997 47


Q ss_pred             chhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCC
Q 037514          504 PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNL  583 (636)
Q Consensus       504 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  583 (636)
                      |..+..+++|+.|++++|++.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|.. +..+
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l  543 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHF  543 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGS
T ss_pred             HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-Hhhh
Confidence            888999999999999999999989999999999999999999999999999999999999999999998 57877 7777


Q ss_pred             C-CCCeeeCCCCCCCcccccccccccC
Q 037514          584 S-GLDYLTISSSNSSLVFNIRHDWIAP  609 (636)
Q Consensus       584 ~-~L~~L~ls~n~~~~~~~~~~~~~~~  609 (636)
                      + +|++|++++|+..  |+|...|+..
T Consensus       544 ~~~L~~l~l~~N~~~--c~c~~~~~~~  568 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVA--CICEHQKFLQ  568 (606)
T ss_dssp             CTTCCEEECCSCCCC--CSSTTHHHHT
T ss_pred             cccCcEEEccCCCcc--cCCccHHHHH
Confidence            6 6999999999554  5555455443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-51  Score=452.18  Aligned_cols=485  Identities=17%  Similarity=0.145  Sum_probs=414.0

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      ..|..|.++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..+..         ++++++|++|++++|.++
T Consensus        48 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA---------LSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT---------TSSCTTCCEEECTTSCCS
T ss_pred             CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh---------hcccccccEeeccccCcc
Confidence            34778999999999999999999999999999999999999999998876543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCC--EEeCcCCcCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLV--TLNLRSSQLSGSIP  226 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p  226 (636)
                      .++.  ..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+..+++|+  +|++++|.+.+..|
T Consensus       119 ~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          119 SIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             CGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred             cCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence            8732  4689999999999999999986555566699999999999999998888999999999  99999999996544


Q ss_pred             CCCCCCCCCCCEEEcccccCcc--------------------------ccchhhhccccCCcccchhhc--cCcCccccc
Q 037514          227 KFPPGKMCNLRRLDLAINGFSG--------------------------EKEQFIQTLSGCNNSTLETLE--TQRMNGTIS  278 (636)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~~~~--------------------------~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~  278 (636)
                      . . ....+|++|++++|....                          ..+..+..+.   ..+++.++  .+.+.+..+
T Consensus       197 ~-~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          197 G-A-FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC---EMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             T-T-TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCT
T ss_pred             h-H-hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh---cCceeEEEeecCccCccCH
Confidence            3 2 344689999998875111                          1111111111   12455655  677777777


Q ss_pred             ccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCC-hhhc
Q 037514          279 ENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFP-SWLK  357 (636)
Q Consensus       279 ~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~  357 (636)
                      ..++.+++|++|++++|+++. +|. .+..+++|++|++++|  ......+..+..+++|++|++++|.+.+.++ ..+.
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~-lp~-~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSE-LPS-GLVGLSTLKKLVLSAN--KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSC-CCS-SCCSCTTCCEEECTTC--CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             HHhccccCCCEEeccCCccCC-CCh-hhcccccCCEEECccC--CcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            889999999999999999985 776 6899999999999999  4555556678889999999999999886665 4589


Q ss_pred             CCCCcceeccccccCCCcc--hhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCC-CCCCCC
Q 037514          358 TQASVFKLTLSNAAISDTI--PDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST-SLPDCS  434 (636)
Q Consensus       358 ~~~~L~~L~L~~n~~~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~  434 (636)
                      .+++|++|++++|.+.+..  +..+..+  ++|++|++++|++.+..+..+..+++|++|++++|++.+..+. .+..++
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNL--SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTC--TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccC--CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            9999999999999998876  6777777  8999999999999988899999999999999999999876654 489999


Q ss_pred             CCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514          435 RLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE  514 (636)
Q Consensus       435 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  514 (636)
                      +|++|++++|.+.+..+..+..+++|++|++++|++++........+..  +++|++|++++|++++..|..+.++++|+
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--LGRLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--CCCccEEECCCCccCccChhhhccccCCC
Confidence            9999999999999998888999999999999999998632221122232  37889999999999988899999999999


Q ss_pred             EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514          515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  578 (636)
                      .|++++|++.+..|..+.+++.| +|++++|++++.+|..+..+++|+.|++++|++.+..+..
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            99999999999999999999999 9999999999999999999999999999999998876643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-51  Score=450.90  Aligned_cols=516  Identities=20%  Similarity=0.170  Sum_probs=423.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC
Q 037514           79 KLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN  158 (636)
Q Consensus        79 ~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  158 (636)
                      .-++++.++++++ .+|..+.  +++++|++++|.++++++..         |.++++|++|++++|.++.++  +..|.
T Consensus        12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~i~--~~~~~   77 (606)
T 3vq2_A           12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYS---------FSNFSELQWLDLSRCEIETIE--DKAWH   77 (606)
T ss_dssp             TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTT---------TTTCTTCCEEECTTCCCCEEC--TTTTT
T ss_pred             CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhh---------ccCCccCcEEeCCCCcccccC--HHHhh
Confidence            3468999999998 6776655  88999999999999887643         899999999999999999884  36899


Q ss_pred             CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCC-CCCCCCCCCCCCCC
Q 037514          159 ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSG-SIPKFPPGKMCNLR  237 (636)
Q Consensus       159 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~  237 (636)
                      ++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|+
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~  156 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLV  156 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCC
T ss_pred             chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCC
Confidence            99999999999999999999999999999999999999999777889999999999999999985 4453 488999999


Q ss_pred             EEEcccccCccccchhhhccccCCcccch----hhc--cCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCC
Q 037514          238 RLDLAINGFSGEKEQFIQTLSGCNNSTLE----TLE--TQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK  311 (636)
Q Consensus       238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~----~L~--~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~  311 (636)
                      +|++++|.+++..+..++.+.     +++    .++  .+.+.+..+..+.. .+|+.|++++|.+.+......+.+++.
T Consensus       157 ~L~Ls~n~l~~~~~~~~~~l~-----~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          157 HVDLSYNYIQTITVNDLQFLR-----ENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             EEECCSSCCCEECTTTTHHHH-----HCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             EEEccCCcceecChhhhhhhh-----ccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccc
Confidence            999999999999888888777     444    344  66776555555444 489999999999875555557888988


Q ss_pred             CCEEEccCCCC-------------------------------ccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCC
Q 037514          312 LNSLYLSSSNK-------------------------------SLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQA  360 (636)
Q Consensus       312 L~~L~L~~n~~-------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  360 (636)
                      ++.+++..+..                               ......+. +..+++|++|++++|.+.. +| .+..++
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~  307 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHF  307 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTC
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccc
Confidence            88877642210                               12222233 6677899999999999864 45 788899


Q ss_pred             CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc--cCCCCCCCCCCCE
Q 037514          361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE--LSTSLPDCSRLTA  438 (636)
Q Consensus       361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~  438 (636)
                      +|++|++++|.+ +.+|..  .+  ++|++|++++|+..+..  .+..+++|++|++++|++++.  .+..+..+++|++
T Consensus       308 ~L~~L~l~~n~l-~~lp~~--~l--~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~  380 (606)
T 3vq2_A          308 KWQSLSIIRCQL-KQFPTL--DL--PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH  380 (606)
T ss_dssp             CCSEEEEESCCC-SSCCCC--CC--SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred             cCCEEEcccccC-cccccC--CC--CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence            999999999999 566643  55  89999999999665544  577899999999999999865  3777889999999


Q ss_pred             EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh-hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514          439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK-ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG  517 (636)
Q Consensus       439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  517 (636)
                      |++++|.+++.+ ..+..+++|++|++++|++.+..+ ..+.     .+++|++|++++|.+++..|..+.++++|++|+
T Consensus       381 L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          381 LDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             EECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             eECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhh-----ccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            999999998866 578899999999999999987766 3333     347889999999999988999999999999999


Q ss_pred             CcCCccCC-ccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          518 LSENSFLG-SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       518 Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      +++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. .|..+++|++|++++|++
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcC
Confidence            99999987 4788999999999999999999999999999999999999999999976565 489999999999999988


Q ss_pred             Ccccccccc---cccCcceeeeecCccccccCCCcccCC
Q 037514          597 SLVFNIRHD---WIAPFNLYTIRGGTRLLVQGLPKYVTS  632 (636)
Q Consensus       597 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~p~~~~~  632 (636)
                      .........   .....++...++.+.+...++.+|+..
T Consensus       534 ~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~  572 (606)
T 3vq2_A          534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE  572 (606)
T ss_dssp             CCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred             cccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence            754443111   122333444444445555556677754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-50  Score=458.48  Aligned_cols=502  Identities=20%  Similarity=0.177  Sum_probs=355.1

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           70 IPEFVYSLKKLKLLDLSESSFSGML-PPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        70 ~p~~~~~l~~L~~L~Ls~~~i~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.++++.+..         |.++++|++|++++|.++
T Consensus        40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~---------~~~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---------FQGLFHLFELRLYFCGLS  110 (844)
T ss_dssp             CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS---------SCSCSSCCCEECTTCCCS
T ss_pred             ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH---------ccCCcccCEeeCcCCCCC
Confidence            3456666666666666666443333 556666666666666666666554332         666666666666666666


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCccccCC--CCCCEEeCcCCcCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQWLFNI--STLVTLNLRSSQLSGSI  225 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~  225 (636)
                      +.......++++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+  ++|++|++++|.+.+..
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence            531111235666666666666666655433 356666666666666666666666666555  66666666666666544


Q ss_pred             CCCCCCCCCC------CCEEEcccccCccccchhhhccccCCcccchhhc-----------cCcCcccccccccCC--CC
Q 037514          226 PKFPPGKMCN------LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE-----------TQRMNGTISENIGQL--AE  286 (636)
Q Consensus       226 p~~~~~~l~~------L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~-----------~~~~~~~~~~~l~~l--~~  286 (636)
                      |. .+..+++      |+.|++++|.+.+..+..+...-  ....++.+.           .+.+.+.....+..+  ++
T Consensus       191 ~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          191 SV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS--CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhc--CcccccceecccccccccccccccCCCChhhhhccccCC
Confidence            32 2333333      67777777766665555444321  001222221           112222223333333  68


Q ss_pred             CCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceec
Q 037514          287 LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLT  366 (636)
Q Consensus       287 L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  366 (636)
                      |+.|++++|.+.+..+. .|..+++|+.|++++|  .+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       268 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYN--KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             CCEEECTTCCCCEECSC-CSSSCCCCCEEEEESC--CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             ccEEECCCCcccccChh-hhhcCCCCCEEECCCC--cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            99999999998875444 7889999999999998  56666777888889999999999999888888899999999999


Q ss_pred             cccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCC
Q 037514          367 LSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF  446 (636)
Q Consensus       367 L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  446 (636)
                      +++|.+.+..+..+..+  ++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..   ...++.|++++|++
T Consensus       345 L~~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFL--EKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL  413 (844)
T ss_dssp             CCSCCCCCCCSSCSCSC--CCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred             CCCCCCCccChhhhcCC--CCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence            99999988887777777  8999999999988643     33788999999999987 44443   46789999999999


Q ss_pred             CCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-----CCCchhhcCCCCCCEEeCcC
Q 037514          447 LQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-----GNLPDSLGNLLCLEYLGLSE  520 (636)
Q Consensus       447 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~  520 (636)
                      ++... ..+..+++|++|++++|++++..+...    ...+++|+.|++++|.++     +..+..|.++++|+.|+|++
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS----SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccccccccc----cccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence            88643 335689999999999999986543321    112478899999999997     34456688999999999999


Q ss_pred             CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      |.+++..|..|.++++|+.|+|++|++++..+..+.  ++|+.|++++|++++..|..    +.+|+.+++++|+  ..|
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~Np--~~C  561 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV----FVSLSVLDITHNK--FIC  561 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC----CSSCCEEEEEEEC--CCC
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH----hCCcCEEEecCCC--ccc
Confidence            999998898999999999999999999998877776  89999999999999866652    4589999999994  455


Q ss_pred             ccccccccC
Q 037514          601 NIRHDWIAP  609 (636)
Q Consensus       601 ~~~~~~~~~  609 (636)
                      +|...|+..
T Consensus       562 ~c~~~~f~~  570 (844)
T 3j0a_A          562 ECELSTFIN  570 (844)
T ss_dssp             SSSCCSHHH
T ss_pred             ccccHHHHH
Confidence            655555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=448.06  Aligned_cols=527  Identities=20%  Similarity=0.176  Sum_probs=418.8

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCC-CcccccccccccccccCCCCCCCCEEecCCcc
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNL-KEYQITKELWVSDLIWLPDLSSSRYLHLEGMK  146 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  146 (636)
                      ..+|.   -.+++++|||++|.+++..|.+|+++++|++|++++|.. ..+++..         |.++++|++|+|++|.
T Consensus        17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---------f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---------FRNLPNLRILDLGSSK   84 (844)
T ss_dssp             SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT---------TSSCTTCCEEECTTCC
T ss_pred             CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH---------hcCCCCCCEEECCCCc
Confidence            45666   346999999999999999999999999999999999954 3333322         8999999999999999


Q ss_pred             CCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcC--ccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEeCcCCcCCC
Q 037514          147 LSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIP-QWLFNISTLVTLNLRSSQLSG  223 (636)
Q Consensus       147 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~  223 (636)
                      +....  ++.|+++++|++|+|++|.+.+..+..  +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus        85 l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           85 IYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCEEC--TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcccC--HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            99873  468999999999999999998755544  8999999999999999988654 578999999999999999986


Q ss_pred             CCCCCCCCCC--CCCCEEEcccccCccccchhhhcccc-CCcccchhhc--cCcCcccccccccCC---CCCCEEEccCC
Q 037514          224 SIPKFPPGKM--CNLRRLDLAINGFSGEKEQFIQTLSG-CNNSTLETLE--TQRMNGTISENIGQL---AELVALNLYRN  295 (636)
Q Consensus       224 ~~p~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~-~~~~~L~~L~--~~~~~~~~~~~l~~l---~~L~~L~l~~n  295 (636)
                      ..+. .+..+  ++|+.|++++|.+.+..+..+..++. .....|+.|+  .+.+.+..+..+...   .+++.+.+..+
T Consensus       163 ~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            5443 35555  78999999999999877766665441 1122366666  566676666666533   56777777633


Q ss_pred             c---------CccccChhhhcCC--CCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514          296 S---------WKGIITENHFQNL--TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK  364 (636)
Q Consensus       296 ~---------~~~~i~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  364 (636)
                      .         +.+ .....|..+  ++|+.|++++|  ......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus       242 ~~~~~~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          242 IMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             CCBCSSSCSSSTT-GGGTTTTTTTTSCCCEEECTTC--CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             cccccccccccCC-CChhhhhccccCCccEEECCCC--cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence            2         222 122244444  68999999999  556667788888999999999999999888889999999999


Q ss_pred             eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514          365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN  444 (636)
Q Consensus       365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  444 (636)
                      |++++|.+.+..+.++..+  ++|++|++++|.+.+..+..|..+++|++|++++|.+++     +..+++|+.|++++|
T Consensus       319 L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGL--PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGN  391 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSC--TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESC
T ss_pred             EECCCCCCCccCHHHhcCC--CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCC
Confidence            9999999998888888887  899999999999988888888999999999999998873     233788999999999


Q ss_pred             CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCcc
Q 037514          445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSF  523 (636)
Q Consensus       445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~  523 (636)
                      +++.++.    ...+++.|++++|++++.....  .+.  .+++|++|++++|++++..+. .+..+++|+.|++++|.+
T Consensus       392 ~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~--~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l  463 (844)
T 3j0a_A          392 KLVTLPK----INLTANLIHLSENRLENLDILY--FLL--RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML  463 (844)
T ss_dssp             CCCCCCC----CCTTCCEEECCSCCCCSSTTHH--HHT--TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred             Ccccccc----cccccceeecccCccccCchhh--hhh--cCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence            9987654    2567999999999998643221  122  358899999999999965443 456789999999999998


Q ss_pred             C-----CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514          524 L-----GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       524 ~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      .     +..+..|.++++|++|+|++|++++.+|..|..+++|+.|+|++|++++ +|...+.  ++|+.|++++|.+..
T Consensus       464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--SCCCEEEEEEECCCC
T ss_pred             ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--ccccEEECCCCcCCC
Confidence            7     4445678899999999999999999999999999999999999999996 5655555  899999999998876


Q ss_pred             ccccccccccCcceeeeecCccccccCCCccc
Q 037514          599 VFNIRHDWIAPFNLYTIRGGTRLLVQGLPKYV  630 (636)
Q Consensus       599 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~  630 (636)
                      ...-...-....++...+..|.|.+.++..|+
T Consensus       541 ~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~  572 (844)
T 3j0a_A          541 PNPDVFVSLSVLDITHNKFICECELSTFINWL  572 (844)
T ss_dssp             CCSCCCSSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred             CChhHhCCcCEEEecCCCcccccccHHHHHHH
Confidence            55533334456667777777777777776665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-48  Score=424.26  Aligned_cols=496  Identities=19%  Similarity=0.208  Sum_probs=402.1

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.++++++..         |.++++|++|++++|.++
T Consensus        21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred             ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc---------ccCchhCCEEeCcCCcCC
Confidence            4565443  48999999999999888889999999999999999999876543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      ..+.  ..|+++++|++|++++|.+....+..++++++|++|++++|.+++ .+|..+.++++|++|++++|++.+..+ 
T Consensus        90 ~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~-  166 (570)
T 2z63_A           90 SLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-  166 (570)
T ss_dssp             EECT--TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-
T ss_pred             ccCH--hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-
Confidence            8843  689999999999999999998877789999999999999999987 469999999999999999999985433 


Q ss_pred             CCCCCCCCC----CEEEcccccCccccchhhhccccCCcccchhhc--cCcC-cccccccccCCCCCCEEEccCCcCc--
Q 037514          228 FPPGKMCNL----RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRM-NGTISENIGQLAELVALNLYRNSWK--  298 (636)
Q Consensus       228 ~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~-~~~~~~~l~~l~~L~~L~l~~n~~~--  298 (636)
                      ..++.+++|    +.+++++|.+.+..+..+...      +++.++  .+.. ...++..+..++.++...+....+.  
T Consensus       167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             HHccchhccchhhhhcccCCCCceecCHHHhccC------cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            246667777    899999999998877665532      455555  2211 1234555666777766655432221  


Q ss_pred             ---cccChhhhcCCCC--CCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC
Q 037514          299 ---GIITENHFQNLTK--LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS  373 (636)
Q Consensus       299 ---~~i~~~~~~~l~~--L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~  373 (636)
                         ..++...+..+++  ++.++++++. ......+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETT-EEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred             hhhhhcchhhhccccccchhhhhhhcch-hhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence               1133334444443  4555665552 234455677788899999999999987 577788888 9999999999998


Q ss_pred             CcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCccc--CCCCCCCCCCCEEECCCCCCCCCcc
Q 037514          374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL--STSLPDCSRLTALDIGGNRFLQLPS  451 (636)
Q Consensus       374 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~  451 (636)
                      ....   ..+  ++|++|++++|.+.+..+.  ..+++|++|++++|++.+..  +..+..+++|++|++++|.+.+.++
T Consensus       318 ~l~~---~~l--~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (570)
T 2z63_A          318 QFPT---LKL--KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS  390 (570)
T ss_dssp             SCCB---CBC--SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred             ccCc---ccc--cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence            4433   233  8999999999998776654  77899999999999998553  6678889999999999999998877


Q ss_pred             hhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC-CccCh
Q 037514          452 TSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL-GSLPT  529 (636)
Q Consensus       452 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~p~  529 (636)
                      . +..+++|++|++++|++.+..+. .+.     .+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|.
T Consensus       391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~  464 (570)
T 2z63_A          391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  464 (570)
T ss_dssp             E-EETCTTCCEEECTTSEEESCTTSCTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             c-ccccCCCCEEEccCCccccccchhhhh-----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence            6 89999999999999999876552 222     3478899999999999888999999999999999999997 57899


Q ss_pred             hhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514          530 SIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN  601 (636)
Q Consensus       530 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~  601 (636)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|...|..+++|++|++++|++...|+
T Consensus       465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccCCCc
Confidence            99999999999999999999999999999999999999999996 566678999999999999996655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.8e-46  Score=402.85  Aligned_cols=470  Identities=20%  Similarity=0.199  Sum_probs=314.7

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|+.+.  ++|++|++++|++++..|.+|+++++|++|++++|+++++++..         +.++++|++|++++|.++
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---------FYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT---------TTTCTTCCEEECTTSCCC
T ss_pred             cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh---------ccccccCCEEECCCCccC
Confidence            4666554  69999999999999888999999999999999999999877543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCC-CccccCCCCCCEEeCcCCcCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQI-PQWLFNISTLVTLNLRSSQLSGSIP  226 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p  226 (636)
                      +.+  +..|+++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+.+..|
T Consensus        88 ~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           88 SLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             SCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             ccC--HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            884  36799999999999999999863 5678999999999999999844434 4689999999999999999997666


Q ss_pred             CCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcccc--Chh
Q 037514          227 KFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGII--TEN  304 (636)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i--~~~  304 (636)
                      . .++.+++|++|++++|.+.......+..+                           ++|++|++++|++.+..  +..
T Consensus       166 ~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          166 Q-SLKSIRDIHHLTLHLSESAFLLEIFADIL---------------------------SSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             T-TTTTCSEEEEEEEECSBSTTHHHHHHHST---------------------------TTBSEEEEESCBCTTCCCCCCS
T ss_pred             h-hhhccccCceEecccCcccccchhhHhhc---------------------------ccccEEEccCCccccccccccc
Confidence            4 58889999999999998764333222333                           34555555555544421  111


Q ss_pred             hhcCCCCCCEEEccCCCCccEEe----cCCCCCCCCCccEEEccCCCCCcC------CChhhcCCCCcceeccccccCCC
Q 037514          305 HFQNLTKLNSLYLSSSNKSLVFT----MRSDWIPPFSLRQMAINDCQLGSA------FPSWLKTQASVFKLTLSNAAISD  374 (636)
Q Consensus       305 ~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~~~~L~~L~L~~n~~~~  374 (636)
                      ....+++|+.|++++|  .....    ....+....+++.+++++|.+.+.      ....+..+.+++.|++.++.+..
T Consensus       218 ~~~~~~~L~~L~l~~n--~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~  295 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGS--VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ  295 (549)
T ss_dssp             SCCCCCCCCEEEEESC--EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred             hhhhhhcccceecccc--ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence            1233445555555544  22111    111122334555555555544331      11223445566666666665543


Q ss_pred             c-----chhhHHhhcCCCccEEECccCcCCccCCccc-CCCCCCcEEEccCCcCCcccC---CCCCCCCCCCEEECCCCC
Q 037514          375 T-----IPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELS---TSLPDCSRLTALDIGGNR  445 (636)
Q Consensus       375 ~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~  445 (636)
                      .     .+..+...  ++|++|++++|++.. +|..+ ..+++|++|++++|++.+..|   ..+..+++|++|++++|+
T Consensus       296 ~~~~~~l~~~~~~~--~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  372 (549)
T 2z81_A          296 FYLFYDLSTVYSLL--EKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH  372 (549)
T ss_dssp             GGGSCCCCHHHHHS--TTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred             hhhcccchhhhhhc--ccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence            2     12222222  567777777777653 34333 456777777777777765442   335667777777777777


Q ss_pred             CCCCcc--hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514          446 FLQLPS--TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF  523 (636)
Q Consensus       446 l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~  523 (636)
                      +++.++  ..+..+++|++|++++|+++ .+|..+.     .+++|++|++++|+++ .+|..+.  ++|+.|++++|++
T Consensus       373 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-----~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l  443 (549)
T 2z81_A          373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-----WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNL  443 (549)
T ss_dssp             CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-----CCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCC
T ss_pred             ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-----ccccccEEECCCCCcc-cccchhc--CCceEEECCCCCh
Confidence            776543  34667777777777777776 3333222     2366677777777776 3443332  5777788888777


Q ss_pred             CCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      ++.+    ..+++|++|++++|+++. +|. ...+++|++|++++|++++ ++...|..+++|+.|++++|+....|
T Consensus       444 ~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          444 DSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             SCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCC-CCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             hhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCC-cCHHHHhcCcccCEEEecCCCccCCC
Confidence            6532    456778888888887774 343 3567778888888887775 44445777788888888888544333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-47  Score=414.31  Aligned_cols=473  Identities=23%  Similarity=0.252  Sum_probs=375.8

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514           70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK  149 (636)
Q Consensus        70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  149 (636)
                      .+..|.++++|++|++++|++++..+..|+++++|++|++++|.++++++..         |.++++|++|++++|.++.
T Consensus        44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~  114 (570)
T 2z63_A           44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVETNLAS  114 (570)
T ss_dssp             CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTSCCCC
T ss_pred             ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh---------hcCcccccccccccccccc
Confidence            3568999999999999999999888889999999999999999999876543         8999999999999999999


Q ss_pred             CCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEeCcCCcCCCC
Q 037514          150 VTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL----VTLNLRSSQLSGS  224 (636)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L----~~L~L~~n~l~~~  224 (636)
                      ++.  ..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..|..+..+++|    ++|++++|.+.+.
T Consensus       115 l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~  192 (570)
T 2z63_A          115 LEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (570)
T ss_dssp             STT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             CCC--ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence            854  358999999999999999987 468899999999999999999999888889988888    8999999999854


Q ss_pred             CCCCCCCCCCCCCEEEcccccCcc-ccchhhhccccCCcccchhhc--c------CcCcccccccccCCC--CCCEEEcc
Q 037514          225 IPKFPPGKMCNLRRLDLAINGFSG-EKEQFIQTLSGCNNSTLETLE--T------QRMNGTISENIGQLA--ELVALNLY  293 (636)
Q Consensus       225 ~p~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~~~~~~L~~L~--~------~~~~~~~~~~l~~l~--~L~~L~l~  293 (636)
                      .|. .+... +|+.|++++|.... ..+..+..++     .++...  .      ..+.......+..+.  .++.++++
T Consensus       193 ~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~-----~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          193 QPG-AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA-----GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             CTT-TTTTC-EEEEEEEESCCSCTTHHHHHHHTTT-----TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CHH-HhccC-cceeEecccccccccchhhhhcCcc-----ccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            443 35544 79999999885432 2333344433     222111  0      011111111222222  25566777


Q ss_pred             CC-cCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccC
Q 037514          294 RN-SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI  372 (636)
Q Consensus       294 ~n-~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~  372 (636)
                      ++ .+.+.++. .+..+++|+.|++++|.  .. .++..+... +|++|++++|.+. .+|.  ..+++|++|++++|.+
T Consensus       266 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~--l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          266 YLDYYLDDIID-LFNCLTNVSSFSLVSVT--IE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             ETTEEESCSTT-TTGGGTTCSEEEEESCE--EC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred             cchhhhhhchh-hhcCcCcccEEEecCcc--ch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence            66 55555554 78888888888888873  22 455556666 8888999888887 4444  4678899999999988


Q ss_pred             CCcchhhHHhhcCCCccEEECccCcCCccC--CcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCc
Q 037514          373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGI--LSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLP  450 (636)
Q Consensus       373 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  450 (636)
                      .+..+.  ..+  ++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus       338 ~~~~~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          338 GNAFSE--VDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             CCBCCC--CBC--TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             cccccc--ccC--CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence            776654  333  88999999999887654  56677889999999999988755444 888999999999999988765


Q ss_pred             c-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-CCCchhhcCCCCCCEEeCcCCccCCccC
Q 037514          451 S-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-GNLPDSLGNLLCLEYLGLSENSFLGSLP  528 (636)
Q Consensus       451 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p  528 (636)
                      + ..+..+++|++|++++|++.+..+..+..     +++|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  487 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhhhhc-----CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence            5 46788999999999999988777665543     477899999999987 5688889999999999999999998889


Q ss_pred             hhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514          529 TSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       529 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  578 (636)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+|..
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            99999999999999999999998889999999999999999999887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-47  Score=420.07  Aligned_cols=488  Identities=18%  Similarity=0.188  Sum_probs=314.7

Q ss_pred             HHhHHHHHhcc-CCCCCC--------CCCCCCCcc--cCcc---c---c-CCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 037514           44 EREREALLKFK-GLIDPS--------ARLSSWKSP--IPEF---V---Y-SLKKLKLLDLSESSFSGMLPPNIGNLSNLQ  105 (636)
Q Consensus        44 ~~~~~~l~~~~-~l~~~~--------~~~~~w~~~--~p~~---~---~-~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~  105 (636)
                      .+|+.|+.+++ ++.++.        ....+|+..  ...|   -   + .-.+|+.|+|++++++|.+|.+|+++++|+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~  108 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE  108 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccce
Confidence            46888999988 653321        223467522  1122   1   1 115899999999999999999999999999


Q ss_pred             EEeCcCCCCCccccc---ccccccccccCCCCCCCCEEecCCccCCCCCChhhhhC-------------------CCCCC
Q 037514          106 YLDLSYQNLKEYQIT---KELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVN-------------------ELPSL  163 (636)
Q Consensus       106 ~L~Ls~n~l~~~~~~---~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------------------~l~~L  163 (636)
                      +|+|++|.+......   ..+.. .+. -..+..|+ ++++++.+...+  +..+.                   ....+
T Consensus       109 ~L~Ls~N~~~~~~~~~~~~~~~~-~~~-~~~~~~l~-l~l~~~~l~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          109 VLALGSHGEKVNERLFGPKGISA-NMS-DEQKQKMR-MHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             EEESCCGGGGGTCCSBSTTSBCT-TCC-HHHHHHHH-THHHHHHTCCCG--GGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             EEECcCCccccCCcccccccccc-Cch-HHHHHHHH-hhHHHhhhccCc--hhhHHHHHHHHhhcCccccccccccccch
Confidence            999999976321100   00000 000 00123344 555555544431  11221                   11122


Q ss_pred             CEEEcc--CCcCCCCCCcCccCCCCCCEEEccCCcCCcC-----------------CCcccc--CCCCCCEEeCcCCcCC
Q 037514          164 VELHLS--NCQLNFPQSLPFLNFTSLSILELSYDNFNSQ-----------------IPQWLF--NISTLVTLNLRSSQLS  222 (636)
Q Consensus       164 ~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~  222 (636)
                      +.+.+.  +|++++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence            222232  466777 777888888888888888888885                 788888  8888888888888888


Q ss_pred             CCCCCCCCCCCCCCCEEEccccc-Ccc-ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccc
Q 037514          223 GSIPKFPPGKMCNLRRLDLAING-FSG-EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGI  300 (636)
Q Consensus       223 ~~~p~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  300 (636)
                      +.+|. .++++++|++|++++|. +++ .+|..+..+.                     .+..+++|++|++++|+++ .
T Consensus       263 ~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---------------------~~~~l~~L~~L~L~~n~l~-~  319 (636)
T 4eco_A          263 TKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALA---------------------DAPVGEKIQIIYIGYNNLK-T  319 (636)
T ss_dssp             SSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------HSGGGGTCCEEECCSSCCS-S
T ss_pred             ccChH-HHhcCCCCCEEECcCCCCCccccchHHHHhhh---------------------ccccCCCCCEEECCCCcCC-c
Confidence            88774 57888888888888887 777 6776665542                     1223468889999999888 4


Q ss_pred             cCh-hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhh
Q 037514          301 ITE-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW  379 (636)
Q Consensus       301 i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~  379 (636)
                      +|. +.++++++|+.|++++|  .+.+.++ .+..+++|++|++++|.+. .+|..+..+++                  
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N--~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~------------------  377 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYN--QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE------------------  377 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSC--CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT------------------
T ss_pred             cCchhhhccCCCCCEEeCcCC--cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc------------------
Confidence            664 36888888888888887  4444444 4445555555555555544 34444444443                  


Q ss_pred             HHhhcCCCccEEECccCcCCccCCcccCCCC--CCcEEEccCCcCCcccCCCCC-------CCCCCCEEECCCCCCCCCc
Q 037514          380 FWGVISQKLSVIDLSNNKFFGGILSSLCSLP--SLYWLRLGGNNLSGELSTSLP-------DCSRLTALDIGGNRFLQLP  450 (636)
Q Consensus       380 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~  450 (636)
                             +|++|++++|.++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|++|++++|.++.++
T Consensus       378 -------~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp  449 (636)
T 4eco_A          378 -------QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP  449 (636)
T ss_dssp             -------TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred             -------cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence                   0555555555554 3444444433  666666666666666666555       5667777777777777666


Q ss_pred             chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhh--cCCCCcccEEEcccCcCCCCCchhhc--CCCCCCEEeCcCCccCC
Q 037514          451 STSMGNLCNLHSLDISYNHITGEIKEL-TNAFS--ACNVSTLETLDLASNKLGGNLPDSLG--NLLCLEYLGLSENSFLG  525 (636)
Q Consensus       451 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~~~~  525 (636)
                      +..+..+++|++|++++|+++ .+|.. +....  .-.+++|++|++++|+++ .+|..+.  .+++|+.|+|++|++.+
T Consensus       450 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          450 KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence            655666777777777777776 33322 11110  001126678888888777 5666665  77888888888888776


Q ss_pred             ccChhhhCCCCCCeEeC------cCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          526 SLPTSIGNLSHLRALYL------SFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       526 ~~p~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                       +|..+.++++|++|++      ++|++.+.+|..+..+++|++|++++|++ +.+|...+   ++|++|++++|++.
T Consensus       528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNI  600 (636)
T ss_dssp             -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTC
T ss_pred             -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCc
Confidence             7777777888888887      45667777788888888888888888888 46777633   67888888888654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-47  Score=409.30  Aligned_cols=454  Identities=19%  Similarity=0.225  Sum_probs=283.3

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      ++||+++|+++ .+|..+.  ++|++|++++|.++++++..         +.++++|++|++++|++++.  .+..|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l   68 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD---------ILSLSKLRILIISHNRIQYL--DISVFKFN   68 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH---------HTTCTTCCEEECCSSCCCEE--EGGGGTTC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh---------ccccccccEEecCCCccCCc--ChHHhhcc
Confidence            56777777777 4666555  77777888777777665432         67777777777777777766  23577777


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC--C
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL--R  237 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~  237 (636)
                      ++|++|++++|+++. +|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+    ..+..+++|  +
T Consensus        69 ~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~  141 (520)
T 2z7x_B           69 QELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNIS  141 (520)
T ss_dssp             TTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEE
T ss_pred             cCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceee
Confidence            888888888887774 3333  67788888888887776 456777788888888888877764    245666666  8


Q ss_pred             EEEcccccC--ccccchhhhccccCCcccchhhccCcCccccc-ccccCCCCCCEEEccCCc-------CccccChhhhc
Q 037514          238 RLDLAINGF--SGEKEQFIQTLSGCNNSTLETLETQRMNGTIS-ENIGQLAELVALNLYRNS-------WKGIITENHFQ  307 (636)
Q Consensus       238 ~L~L~~n~~--~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~-~~l~~l~~L~~L~l~~n~-------~~~~i~~~~~~  307 (636)
                      +|++++|.+  .+..|..+..+.. ....+ .+..+.+.+.++ ..+..+++|+.+++++|.       +.+.++  .+.
T Consensus       142 ~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~  217 (520)
T 2z7x_B          142 KVLLVLGETYGEKEDPEGLQDFNT-ESLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQ  217 (520)
T ss_dssp             EEEEEECTTTTSSCCTTTTTTCCE-EEEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGG
T ss_pred             EEEeeccccccccccccccccccc-ceEEE-EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhc
Confidence            888887777  5555554444330 00000 001222222222 233444555555555554       333222  344


Q ss_pred             CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhh---cCCCCcceeccccccCCCcchhhH----
Q 037514          308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL---KTQASVFKLTLSNAAISDTIPDWF----  380 (636)
Q Consensus       308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~n~~~~~~~~~~----  380 (636)
                      .+++|+.|++++|                          .+.+..+..+   ...++|++|++++|.+.+.+|..+    
T Consensus       218 ~l~~L~~L~l~~~--------------------------~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  271 (520)
T 2z7x_B          218 TNPKLSNLTLNNI--------------------------ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS  271 (520)
T ss_dssp             GCTTCCEEEEEEE--------------------------EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred             cccchhhcccccc--------------------------ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence            5555555555444                          4332211111   012455666666666555555544    


Q ss_pred             -HhhcCCCccEEECccCcCCccCC-cccCCC---CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc
Q 037514          381 -WGVISQKLSVIDLSNNKFFGGIL-SSLCSL---PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG  455 (636)
Q Consensus       381 -~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  455 (636)
                       ..+  +.|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.+++..+..+.
T Consensus       272 ~~~l--~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~  345 (520)
T 2z7x_B          272 GTSL--KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG  345 (520)
T ss_dssp             SCCC--CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             cccC--ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence             333  5566666666655  222 222222   45666666666654221  124566777777777777776666677


Q ss_pred             CCCCCCeEeCcCCcCCC--chhhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhh
Q 037514          456 NLCNLHSLDISYNHITG--EIKELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIG  532 (636)
Q Consensus       456 ~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~  532 (636)
                      .+++|++|++++|++++  .+|..+.     .+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+.
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred             cCCCCCEEEccCCccCccccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence            77777777777777764  2223232     236667888888877764554 367788888888888888777776554


Q ss_pred             CCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       533 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                        ++|++|++++|+++. +|..+..+++|++|++++|+++ .+|...|..+++|++|++++|++...|
T Consensus       421 --~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          421 --PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             --TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             --ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence              688888888888884 5666668888888888888888 577777888889999999998554433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.3e-46  Score=404.61  Aligned_cols=486  Identities=17%  Similarity=0.163  Sum_probs=377.2

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      .+.|.+++.++ .+|..+.  ++|++|++++|.++++.+..         +.++++|++|++++|.++..+.  ..|+++
T Consensus         8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l   73 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGD---------LRACANLQVLILKSSRINTIEG--DAFYSL   73 (549)
T ss_dssp             SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSST---------TSSCTTCCEEECTTSCCCEECT--TTTTTC
T ss_pred             ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhh---------hhcCCcccEEECCCCCcCccCh--hhcccc
Confidence            44688888887 5676554  78999999999998876532         8899999999999999988743  678899


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL  239 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  239 (636)
                      ++|++|++++|.+.+..+..|.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+|...+.++++|++|
T Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            999999999999998888788999999999999999986 3567888999999999999986557665568889999999


Q ss_pred             EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514          240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS  319 (636)
Q Consensus       240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~  319 (636)
                      ++++|.+.+..|                           ..++.+++|++|++++|.+.. ++...+..+++|++|++++
T Consensus       154 ~L~~n~l~~~~~---------------------------~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          154 EIKALSLRNYQS---------------------------QSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             EEEETTCCEECT---------------------------TTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEES
T ss_pred             eccCCcccccCh---------------------------hhhhccccCceEecccCcccc-cchhhHhhcccccEEEccC
Confidence            999888876544                           445556689999999998865 5665667899999999999


Q ss_pred             CCCccEEecC-CCCCCCCCccEEEccCCCCCcCCC----hhhcCCCCcceeccccccCCCcch------hhHHhhcCCCc
Q 037514          320 SNKSLVFTMR-SDWIPPFSLRQMAINDCQLGSAFP----SWLKTQASVFKLTLSNAAISDTIP------DWFWGVISQKL  388 (636)
Q Consensus       320 n~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~n~~~~~~~------~~~~~~~~~~L  388 (636)
                      |.+......+ .......+|+.|++++|.+.+..+    ..+..+++|+.+++++|.+.+...      ..+...  +++
T Consensus       206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l--~~L  283 (549)
T 2z81_A          206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL--GKV  283 (549)
T ss_dssp             CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC--TTC
T ss_pred             CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh--ccc
Confidence            9543221111 122356789999999998876444    344678899999999998876421      112233  789


Q ss_pred             cEEECccCcCCccC-----CcccCCCCCCcEEEccCCcCCcccCCCC-CCCCCCCEEECCCCCCCCCcc---hhhcCCCC
Q 037514          389 SVIDLSNNKFFGGI-----LSSLCSLPSLYWLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPS---TSMGNLCN  459 (636)
Q Consensus       389 ~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~  459 (636)
                      +.|++.++.+....     +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+++..+   ..++.+++
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence            99999998875431     112233578999999999987 566555 579999999999999998653   23678999


Q ss_pred             CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514          460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA  539 (636)
Q Consensus       460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  539 (636)
                      |++|++++|++++..+. ...+..  +++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+  .++|++
T Consensus       363 L~~L~Ls~N~l~~~~~~-~~~~~~--l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~  435 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQKT-GEILLT--LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEV  435 (549)
T ss_dssp             CCEEECTTSCCCCHHHH-HHHGGG--CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSE
T ss_pred             CcEEEccCCcccccccc-hhhhhc--CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceE
Confidence            99999999999865431 111222  478899999999999 68888999999999999999987 455443  268999


Q ss_pred             EeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCcceeeeecCc
Q 037514          540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPFNLYTIRGGT  619 (636)
Q Consensus       540 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~~~~~~  619 (636)
                      |++++|++++.+    ..+++|++|++++|+++ .+|..  ..+++|++|++++|++.....-  .+.....++.+.+.+
T Consensus       436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~--~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA--SLFPVLLVMKISRNQLKSVPDG--IFDRLTSLQKIWLHT  506 (549)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG--GGCTTCCEEECCSSCCCCCCTT--GGGGCTTCCEEECCS
T ss_pred             EECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc--ccCccCCEEecCCCccCCcCHH--HHhcCcccCEEEecC
Confidence            999999998853    57899999999999998 68873  5689999999999987654331  123345677788777


Q ss_pred             cccccCCC
Q 037514          620 RLLVQGLP  627 (636)
Q Consensus       620 ~~~~~~~p  627 (636)
                      +...+..|
T Consensus       507 N~~~~~~~  514 (549)
T 2z81_A          507 NPWDCSCP  514 (549)
T ss_dssp             SCBCCCHH
T ss_pred             CCccCCCc
Confidence            76655555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-46  Score=416.56  Aligned_cols=489  Identities=20%  Similarity=0.218  Sum_probs=267.6

Q ss_pred             ccCHHhHHHHHhcc-CCCCCCCCCCCCCccc------C---cc------------c---cC-CCCCCEEeCCCCCCCCCC
Q 037514           41 RCTEREREALLKFK-GLIDPSARLSSWKSPI------P---EF------------V---YS-LKKLKLLDLSESSFSGML   94 (636)
Q Consensus        41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~------p---~~------------~---~~-l~~L~~L~Ls~~~i~~~~   94 (636)
                      .+..+|+.||++|| ++.++     +|+..-      |   .|            -   +. -.+|+.|+|+++++.|.+
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            34567999999999 77544     453211      2   12            1   11 258999999999999999


Q ss_pred             CccccCCCCCCEEeC-cCCCCCcccccccccccccccCCCCCCCC--EEe---------c-CCccCCCC--------CCh
Q 037514           95 PPNIGNLSNLQYLDL-SYQNLKEYQITKELWVSDLIWLPDLSSSR--YLH---------L-EGMKLSKV--------TNW  153 (636)
Q Consensus        95 ~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~~~~~~~l~~L~--~L~---------L-~~n~l~~~--------~~~  153 (636)
                      |.+|++|++|++|+| ++|.+.+..+......     -..+...+  .+.         . ....+...        +..
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~-----~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~  414 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-----TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM  414 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCC-----CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred             chHHhccccceEeeeccccccccccccccccc-----ccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence            999999999999999 8887765421100000     00000000  000         0 00000000        000


Q ss_pred             -hhhhCCCCCCCEEEccC--CcCCCCCCcCccCCCCCCEEEccCCcCCc-----------------CCCcccc--CCCCC
Q 037514          154 -LQVVNELPSLVELHLSN--CQLNFPQSLPFLNFTSLSILELSYDNFNS-----------------QIPQWLF--NISTL  211 (636)
Q Consensus       154 -~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L  211 (636)
                       +........++.+.+..  |.+++ +|..+.++++|++|+|++|.+++                 .+|..++  ++++|
T Consensus       415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L  493 (876)
T 4ecn_A          415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL  493 (876)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence             00001122333333333  55666 56677777777777777777776                 3777766  88888


Q ss_pred             CEEeCcCCcCCCCCCCCCCCCCCCCCEEEccccc-Ccc-ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCE
Q 037514          212 VTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAING-FSG-EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVA  289 (636)
Q Consensus       212 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~  289 (636)
                      ++|++++|.+.+.+|. .++++++|++|++++|+ +++ .+|..+..++                    ..+..+++|++
T Consensus       494 ~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~--------------------~~~~~l~~L~~  552 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLA--------------------DDEDTGPKIQI  552 (876)
T ss_dssp             CEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH--------------------HCTTTTTTCCE
T ss_pred             CEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhh--------------------hcccccCCccE
Confidence            8888888887777763 47788888888888887 776 6666655443                    13345668888


Q ss_pred             EEccCCcCccccCh-hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC-cceecc
Q 037514          290 LNLYRNSWKGIITE-NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS-VFKLTL  367 (636)
Q Consensus       290 L~l~~n~~~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L  367 (636)
                      |++++|++. .+|. ..+.++++|+.|++++|.+  . .++ .+..+++|++|++++|.+. .+|..+..+++ |+.|++
T Consensus       553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l--~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC--C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc--c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            888888888 4665 4688888888888888843  2 333 5566666666666666666 55555555555 666666


Q ss_pred             ccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCC--CCCCCCEEECCCCC
Q 037514          368 SNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP--DCSRLTALDIGGNR  445 (636)
Q Consensus       368 ~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~  445 (636)
                      ++|.+. .+|..+.....++|+.|++++|++.+.+|....                     .+.  .+++|++|++++|.
T Consensus       627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~---------------------~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC---------------------SMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS---------------------CTTTCCCCCEEEEECCSSC
T ss_pred             cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh---------------------hhccccCCCcCEEEccCCc
Confidence            666555 334433332112255555555555443332110                     011  12244444444444


Q ss_pred             CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhc---CCCCcccEEEcccCcCCCCCchhhc--CCCCCCEEeCcC
Q 037514          446 FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSA---CNVSTLETLDLASNKLGGNLPDSLG--NLLCLEYLGLSE  520 (636)
Q Consensus       446 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~  520 (636)
                      ++.+++..+..+++|+.|++++|+++ .+|........   .++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++
T Consensus       685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred             CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence            44444333334444444444444444 22221110000   00124455555555555 4444443  455555555555


Q ss_pred             CccCCccChhhhCCCCCCeEeCcC------ccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          521 NSFLGSLPTSIGNLSHLRALYLSF------NVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      |++.+ +|..+..+++|+.|++++      |++.+.+|..+..+++|+.|++++|++ +.+|...+   ++|+.|++++|
T Consensus       763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N  837 (876)
T 4ecn_A          763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADN  837 (876)
T ss_dssp             SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSC
T ss_pred             CCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCC
Confidence            55543 444455555555555543      444555555555555555555555555 34554421   35555555555


Q ss_pred             CC
Q 037514          595 NS  596 (636)
Q Consensus       595 ~~  596 (636)
                      ++
T Consensus       838 ~l  839 (876)
T 4ecn_A          838 PN  839 (876)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6e-45  Score=403.84  Aligned_cols=502  Identities=22%  Similarity=0.259  Sum_probs=375.5

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|+.+.  +++++|||++|+|+++.+.+|.++++|++|+|++|+|++++++.         |.++++|++|+|++|+++
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~---------f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCC
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH---------hcCCCCCCEEEccCCcCC
Confidence            4555443  38999999999999888889999999999999999999987654         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      .++.  ..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+.
T Consensus       114 ~l~~--~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          114 SLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             EECG--GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCH--HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9854  689999999999999999999888899999999999999999976 4688889999999999999999854332


Q ss_pred             CCCCCCC----CCCEEEcccccCccccchhhhccccCCcccchhhc--cCcCcc-cccccccCCCCCCEEEccCCcCccc
Q 037514          228 FPPGKMC----NLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNG-TISENIGQLAELVALNLYRNSWKGI  300 (636)
Q Consensus       228 ~~~~~l~----~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~  300 (636)
                       .+..+.    ....++++.|.+....+..+...      .++.+.  .+.... ..+..+..+..++...+..+.....
T Consensus       192 -~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  264 (635)
T 4g8a_A          192 -DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  264 (635)
T ss_dssp             -GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             -cccchhhhhhhhhhhhcccCcccccCcccccch------hhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence             233333    34578899998887666554433      222222  222211 1223344455555444322111100


Q ss_pred             -----cCh---------------------------hhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCC
Q 037514          301 -----ITE---------------------------NHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQL  348 (636)
Q Consensus       301 -----i~~---------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~  348 (636)
                           ...                           ..+....+++.+.+.++  ...  ....+.....++.|++.+|.+
T Consensus       265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~--~~~~~~~~~~L~~L~l~~~~~  340 (635)
T 4g8a_A          265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV--TIE--RVKDFSYNFGWQHLELVNCKF  340 (635)
T ss_dssp             CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC--EEE--ECGGGGSCCCCSEEEEESCEE
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc--ccc--cccccccchhhhhhhcccccc
Confidence                 000                           12334455566666555  211  122234455677777777776


Q ss_pred             CcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc--cCCcccCCCCCCcEEEccCCcCCccc
Q 037514          349 GSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG--GILSSLCSLPSLYWLRLGGNNLSGEL  426 (636)
Q Consensus       349 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~  426 (636)
                      ....+.   .+..++.+++..|.+....+.  ..+  ++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..
T Consensus       341 ~~~~~~---~l~~L~~l~l~~n~~~~~~~~--~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~  412 (635)
T 4g8a_A          341 GQFPTL---KLKSLKRLTFTSNKGGNAFSE--VDL--PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TM  412 (635)
T ss_dssp             SSCCCC---BCTTCCEEEEESCCSCCBCCC--CBC--TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EE
T ss_pred             cCcCcc---cchhhhhcccccccCCCCccc--ccc--cccccchhhccccccccccccchhhhhhhhhhhccccccc-cc
Confidence            544332   345677777777766544322  223  788999999888753  34455567788999999888876 45


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCC-cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC-CCCc
Q 037514          427 STSLPDCSRLTALDIGGNRFLQL-PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG-GNLP  504 (636)
Q Consensus       427 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~  504 (636)
                      +..+..+++|+.++++.+..... ....+..+++++.+++++|.+.+..+..+..     +++|+.|++++|++. +..|
T Consensus       413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----~~~L~~L~Ls~N~~~~~~~~  487 (635)
T 4g8a_A          413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLP  487 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEEC
T ss_pred             cccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----chhhhhhhhhhcccccccCc
Confidence            56688899999999999887654 3456788999999999999998777665543     367799999999754 4577


Q ss_pred             hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCC-
Q 037514          505 DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNL-  583 (636)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-  583 (636)
                      ..+..+++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..| ..|..+ 
T Consensus       488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~  566 (635)
T 4g8a_A          488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFP  566 (635)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS-SCTTCCC
T ss_pred             hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH-HHHHhhh
Confidence            889999999999999999999999999999999999999999999999999999999999999999997555 457777 


Q ss_pred             CCCCeeeCCCCCCCcccccccccccCc
Q 037514          584 SGLDYLTISSSNSSLVFNIRHDWIAPF  610 (636)
Q Consensus       584 ~~L~~L~ls~n~~~~~~~~~~~~~~~~  610 (636)
                      ++|++|++++|  +..|+|...|+..|
T Consensus       567 ~~L~~L~L~~N--p~~C~C~~~~~~~w  591 (635)
T 4g8a_A          567 SSLAFLNLTQN--DFACTCEHQSFLQW  591 (635)
T ss_dssp             TTCCEEECTTC--CBCCSGGGHHHHHH
T ss_pred             CcCCEEEeeCC--CCcccCCcHHHHHH
Confidence            78999999999  56667666776544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=389.73  Aligned_cols=449  Identities=18%  Similarity=0.191  Sum_probs=351.8

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|+++++.+..         +.++++|++|++++|.++
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV---------FKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG---------GTTCTTCCEEECCSSCCC
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH---------hhcccCCCEEecCCCcee
Confidence            4676655  79999999999999888889999999999999999999876543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEeCcCCcC--CC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL--VTLNLRSSQL--SG  223 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~  223 (636)
                      .++.   .  .+++|++|++++|.+.+ ..|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+
T Consensus        83 ~lp~---~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           83 KISC---H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             EEEC---C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             ecCc---c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence            7754   3  79999999999999987 467899999999999999999987   457778888  9999999998  55


Q ss_pred             CCCCCCCCCCC-CCCEEEcccccCccccch-hhhccccCCcccchhhc--cCc-------CcccccccccCCCCCCEEEc
Q 037514          224 SIPKFPPGKMC-NLRRLDLAINGFSGEKEQ-FIQTLSGCNNSTLETLE--TQR-------MNGTISENIGQLAELVALNL  292 (636)
Q Consensus       224 ~~p~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~~~~~~L~~L~--~~~-------~~~~~~~~l~~l~~L~~L~l  292 (636)
                      ..|. .+..+. +...+++++|.+.+..+. .+..++     +|+.++  .+.       +.+.+| .++.+++|+.|++
T Consensus       155 ~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l  227 (520)
T 2z7x_B          155 EDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVA-----NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL  227 (520)
T ss_dssp             CCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS-----EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred             cccc-cccccccceEEEEeccCcchhhhhhhhhhccc-----ceeeccccccccccccceeecchh-hhccccchhhccc
Confidence            5443 233333 233577788887764443 344555     677766  333       555555 7889999999999


Q ss_pred             cCCcCccccChhhhc--CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhh-----cCCCCccee
Q 037514          293 YRNSWKGIITENHFQ--NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL-----KTQASVFKL  365 (636)
Q Consensus       293 ~~n~~~~~i~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L  365 (636)
                      ++|.+.+........  ..++|++|++++|                          .+.+.+|..+     ..+++|+.+
T Consensus       228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n--------------------------~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          228 NNIETTWNSFIRILQLVWHTTVWYFSISNV--------------------------KLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             EEEEEEHHHHHHHHHHHHTSSCSEEEEEEE--------------------------EEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             cccccCHHHHHHHHHHhhhCcccEEEeecc--------------------------cccCccccchhhcccccCceeEec
Confidence            999887643221111  1346666666655                          4444555555     677888888


Q ss_pred             ccccccCCCcch-hhHHhhc-CCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCC
Q 037514          366 TLSNAAISDTIP-DWFWGVI-SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG  443 (636)
Q Consensus       366 ~L~~n~~~~~~~-~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  443 (636)
                      ++++|.+  .+| .++...+ ..+|+.|++++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++
T Consensus       282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence            8888887  333 3433321 146999999999886543  126789999999999999988899999999999999999


Q ss_pred             CCCCCC--cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          444 NRFLQL--PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       444 n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      |++++.  .+..+..+++|++|++++|++++.+|...  +.  .+++|++|++++|++++..|..+.  ++|+.|++++|
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~--~~--~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N  431 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD--CS--WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN  431 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS--CC--CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccch--hc--cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence            999974  44678999999999999999987555431  11  347889999999999877776654  79999999999


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhh
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF  580 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  580 (636)
                      ++. .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+..+...|
T Consensus       432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            998 7888888999999999999999976555689999999999999999887665434

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-45  Score=401.01  Aligned_cols=408  Identities=17%  Similarity=0.195  Sum_probs=260.9

Q ss_pred             cccCccccCCCCCCEEeCCCCCCC------C---------------------------CCCcccc---------------
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFS------G---------------------------MLPPNIG---------------   99 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~------~---------------------------~~~~~l~---------------   99 (636)
                      +.+|+.++++++|++|+|++|.+.      +                           ..|..+.               
T Consensus        95 g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           95 GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            789999999999999999999761      1                           1111111               


Q ss_pred             ----CCCCCCEEeCc--CCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC-------C--------ChhhhhC
Q 037514          100 ----NLSNLQYLDLS--YQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV-------T--------NWLQVVN  158 (636)
Q Consensus       100 ----~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~--------~~~~~~~  158 (636)
                          ....++.+.+.  .|++++++..          ++++++|++|++++|.+++.       +        .+|..++
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~ip~~----------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITFVSKA----------VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGG----------GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             cccccccchhhhhhccccCCCccCCHH----------HhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence                01112222222  4566664432          88999999999999999981       0        0235778


Q ss_pred             --CCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCc-CCc-CCCccccCC------CCCCEEeCcCCcCCCCCCCC
Q 037514          159 --ELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN-FNS-QIPQWLFNI------STLVTLNLRSSQLSGSIPKF  228 (636)
Q Consensus       159 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~  228 (636)
                        ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+      ++|++|++++|+++ .+|..
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~  323 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE  323 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch
Confidence              99999999999999999999999999999999999998 988 889988887      99999999999999 77751


Q ss_pred             -CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514          229 -PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ  307 (636)
Q Consensus       229 -~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~  307 (636)
                       .++++++|++|++++|.+.|.+| .+.                           .+++|++|++++|++. .+|. .+.
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~---------------------------~l~~L~~L~L~~N~l~-~lp~-~l~  373 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AFG---------------------------SEIKLASLNLAYNQIT-EIPA-NFC  373 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CCE---------------------------EEEEESEEECCSSEEE-ECCT-TSE
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hhC---------------------------CCCCCCEEECCCCccc-cccH-hhh
Confidence             37899999999999999887655 443                           4458889999999888 4776 588


Q ss_pred             CCCC-CCEEEccCCCCccEEecCCCCCCCC--CccEEEccCCCCCcCCChhhc-------CCCCcceeccccccCCCcch
Q 037514          308 NLTK-LNSLYLSSSNKSLVFTMRSDWIPPF--SLRQMAINDCQLGSAFPSWLK-------TQASVFKLTLSNAAISDTIP  377 (636)
Q Consensus       308 ~l~~-L~~L~L~~n~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~L~~n~~~~~~~  377 (636)
                      .+++ |++|++++|.+.   .++..+....  +|++|++++|.+.+..|..+.       .+++|++|++++|.+.+..+
T Consensus       374 ~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          374 GFTEQVENLSFAHNKLK---YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             EECTTCCEEECCSSCCS---SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             hhcccCcEEEccCCcCc---ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            8888 999999888432   3444444333  677777777777766666655       45556666666666554333


Q ss_pred             hhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc--
Q 037514          378 DWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG--  455 (636)
Q Consensus       378 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--  455 (636)
                      ..+..+  ++|++|++++|+++...+..+....                 ..+.++++|++|++++|.++.++. .+.  
T Consensus       451 ~~~~~l--~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~  510 (636)
T 4eco_A          451 ELFSTG--SPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLTKLSD-DFRAT  510 (636)
T ss_dssp             HHHHTT--CCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCCBCCG-GGSTT
T ss_pred             HHHccC--CCCCEEECCCCCCCCcCHHHhcccc-----------------ccccccCCccEEECcCCcCCccCh-hhhhc
Confidence            333333  5555555555555422111111111                 001122256666666666664333 233  


Q ss_pred             CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcc------cCcCCCCCchhhcCCCCCCEEeCcCCccCCccCh
Q 037514          456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA------SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPT  529 (636)
Q Consensus       456 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls------~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~  529 (636)
                      .+++|++|++++|++++ +|..+..     +++|++|+++      +|++.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus       511 ~l~~L~~L~Ls~N~l~~-ip~~~~~-----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK-FPTQPLN-----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGG-----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             cCCCcCEEECCCCCCCC-cChhhhc-----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            55555555555555554 3333221     2444555553      3444445555555555555555555555 34444


Q ss_pred             hhhCCCCCCeEeCcCcccc
Q 037514          530 SIGNLSHLRALYLSFNVMS  548 (636)
Q Consensus       530 ~l~~l~~L~~L~Ls~n~l~  548 (636)
                      .+.  ++|++|++++|++.
T Consensus       584 ~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCC--TTCCEEECCSCTTC
T ss_pred             hHh--CcCCEEECcCCCCc
Confidence            333  44555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-44  Score=404.48  Aligned_cols=468  Identities=16%  Similarity=0.190  Sum_probs=285.1

Q ss_pred             cccCccccCCCCCCEEeC-CCCCCCCCCCccccCCC-CCCEE--------------eC-cCCCCCccccccccc-ccccc
Q 037514           68 SPIPEFVYSLKKLKLLDL-SESSFSGMLPPNIGNLS-NLQYL--------------DL-SYQNLKEYQITKELW-VSDLI  129 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~L-s~~~i~~~~~~~l~~l~-~L~~L--------------~L-s~n~l~~~~~~~~~~-~~~~~  129 (636)
                      +.+|+.|+++++|++|+| ++|.++|..|..-.... .+...              +. ....+...... .+. .....
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~-~l~~~~~~~  415 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD-AINRNPEMK  415 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH-HHHTCTTSC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH-HhhhCcccc
Confidence            789999999999999999 88888776442211110 00000              00 00000000000 000 00000


Q ss_pred             --cCCCCCCCCEEecCC--ccCCCCCChhhhhCCCCCCCEEEccCCcCCC-----------------CCCcCcc--CCCC
Q 037514          130 --WLPDLSSSRYLHLEG--MKLSKVTNWLQVVNELPSLVELHLSNCQLNF-----------------PQSLPFL--NFTS  186 (636)
Q Consensus       130 --~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~  186 (636)
                        .......++.+.+..  |.++++|   ..++++++|++|+|++|.+++                 .+|..++  ++++
T Consensus       416 ~i~~~~~l~l~~l~l~~~~N~L~~IP---~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~  492 (876)
T 4ecn_A          416 PIKKDSRISLKDTQIGNLTNRITFIS---KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD  492 (876)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEEEC---GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred             ccccccccchhhceeccccCcccchh---HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence              012222333444433  5666543   467777777777777777776                 2666666  7888


Q ss_pred             CCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc-CCC-CCCCC------CCCCCCCCCEEEcccccCccccchhhhccc
Q 037514          187 LSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ-LSG-SIPKF------PPGKMCNLRRLDLAINGFSGEKEQFIQTLS  258 (636)
Q Consensus       187 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~------~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  258 (636)
                      |++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|..      .+..+++|++|++++|.+. .+|..     
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~-----  566 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS-----  566 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-----
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-----
Confidence            8888888887777777777888888888888887 665 44431      2344557888888877776 33320     


Q ss_pred             cCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCC-
Q 037514          259 GCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFS-  337 (636)
Q Consensus       259 ~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~-  337 (636)
                                          ..++.+++|+.|++++|++. .+|  .|..+++|+.|++++|.+  . .++..+..+++ 
T Consensus       567 --------------------~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l--~-~lp~~l~~l~~~  620 (876)
T 4ecn_A          567 --------------------ASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQI--E-EIPEDFCAFTDQ  620 (876)
T ss_dssp             --------------------HHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCC--S-CCCTTSCEECTT
T ss_pred             --------------------hhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCcc--c-cchHHHhhcccc
Confidence                                03444557777777777776 455  567777777777777733  2 55556666666 


Q ss_pred             ccEEEccCCCCCcCCChhhcCCCC--cceeccccccCCCcchhhH---HhhcCCCccEEECccCcCCccCCcccCCCCCC
Q 037514          338 LRQMAINDCQLGSAFPSWLKTQAS--VFKLTLSNAAISDTIPDWF---WGVISQKLSVIDLSNNKFFGGILSSLCSLPSL  412 (636)
Q Consensus       338 L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~n~~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  412 (636)
                      |++|++++|.+. .+|..+.....  |+.|++++|.+.+.+|...   .....++|++|++++|.++...+..+..+++|
T Consensus       621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L  699 (876)
T 4ecn_A          621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI  699 (876)
T ss_dssp             CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred             CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence            777777777776 56666655543  7788888887776654321   11111478888888888874433344577888


Q ss_pred             cEEEccCCcCCcccCCCCCC--------CCCCCEEECCCCCCCCCcchhhc--CCCCCCeEeCcCCcCCCchhhhHHhhh
Q 037514          413 YWLRLGGNNLSGELSTSLPD--------CSRLTALDIGGNRFLQLPSTSMG--NLCNLHSLDISYNHITGEIKELTNAFS  482 (636)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~  482 (636)
                      +.|++++|++. .+|..+..        +++|++|++++|+++.++. .+.  .+++|+.|++++|++++ +|..+..  
T Consensus       700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~--  774 (876)
T 4ecn_A          700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLN--  774 (876)
T ss_dssp             SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGG--
T ss_pred             CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCc-cchhhhc--
Confidence            88888888887 44443322        2389999999999886554 454  78888888888888775 4443332  


Q ss_pred             cCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCC
Q 037514          483 ACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPY  562 (636)
Q Consensus       483 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  562 (636)
                         +++|+.|+|++|+                  ++++|.+.+.+|..+.++++|+.|++++|++ +.+|..+.  ++|+
T Consensus       775 ---L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~  830 (876)
T 4ecn_A          775 ---SSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY  830 (876)
T ss_dssp             ---CTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred             ---CCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence               3566777776654                  4455666666666666677777777777766 44455443  4677


Q ss_pred             EEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccccc
Q 037514          563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNI  602 (636)
Q Consensus       563 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~  602 (636)
                      .|+|++|++...-+ ..|.....+..+.+++|....+..|
T Consensus       831 ~LdLs~N~l~~i~~-~~~~~~~~~~~~~L~~n~~~~I~gC  869 (876)
T 4ecn_A          831 ILDIADNPNISIDV-TSVCPYIEAGMYVLLYDKTQDIRGC  869 (876)
T ss_dssp             EEECCSCTTCEEEC-GGGHHHHHTTCCEEECCTTSEEESC
T ss_pred             EEECCCCCCCccCh-HHccccccchheeecCCCccccCCC
Confidence            77777777664332 3344444555566666655544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.3e-43  Score=382.89  Aligned_cols=453  Identities=18%  Similarity=0.236  Sum_probs=232.8

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      ++++++++++++ +|..+.  ++|++|++++|.++++++..         +.++++|++|++++|.+++++  ++.|.++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l   99 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD---------ISFLSELRVLRLSHNRIRSLD--FHVFLFN   99 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG---------TTTCTTCCEEECCSCCCCEEC--TTTTTTC
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh---------hccCCCccEEECCCCCCCcCC--HHHhCCC
Confidence            566666666663 454443  56666666666666554332         666666666666666666552  2456666


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC--C
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS-QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL--R  237 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~  237 (636)
                      ++|++|++++|+++.. |..  .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+    ..+..+++|  +
T Consensus       100 ~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~  172 (562)
T 3a79_B          100 QDLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLS  172 (562)
T ss_dssp             TTCCEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEE
T ss_pred             CCCCEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----Cchhhhhhceee
Confidence            6677777776666643 322  56677777777777666 234667777777777777776653    234444455  7


Q ss_pred             EEEcccccC--ccccchhhhccccCCcccchhhccCcCcccccc-cccCCCCCCEEEccCCc-----CccccChhhhcCC
Q 037514          238 RLDLAINGF--SGEKEQFIQTLSGCNNSTLETLETQRMNGTISE-NIGQLAELVALNLYRNS-----WKGIITENHFQNL  309 (636)
Q Consensus       238 ~L~L~~n~~--~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~-~l~~l~~L~~L~l~~n~-----~~~~i~~~~~~~l  309 (636)
                      +|++++|.+  .+..+..+..+.. ....+ .+..+.+.+.++. .+..+++|+.+++++|+     +.+.+  ..+..+
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l  248 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNT-TVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRG  248 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCE-EEEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSC
T ss_pred             EEEeecccccccccCcccccccCc-ceEEE-EecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhcc
Confidence            777777766  5555544443320 00000 1112333332222 33455667777777664     12211  145666


Q ss_pred             CCCCEEEccCCCCccEEecC---CCCCCCCCccEEEccCCCCCcCCChhh-----cCCCCcceeccccccCCCcch-hhH
Q 037514          310 TKLNSLYLSSSNKSLVFTMR---SDWIPPFSLRQMAINDCQLGSAFPSWL-----KTQASVFKLTLSNAAISDTIP-DWF  380 (636)
Q Consensus       310 ~~L~~L~L~~n~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~L~~n~~~~~~~-~~~  380 (636)
                      ++|+.+++.++.  ......   .......+|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| .++
T Consensus       249 ~~L~~L~L~~~~--l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~  324 (562)
T 3a79_B          249 PTLLNVTLQHIE--TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEAL  324 (562)
T ss_dssp             SSCEEEEEEEEE--ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHH
T ss_pred             CcceEEEecCCc--CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhh
Confidence            666666666541  110000   000111255555555555555455444     3344444444444443  122 111


Q ss_pred             HhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCC
Q 037514          381 WGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL  460 (636)
Q Consensus       381 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  460 (636)
                      ...+                       ...+|++|++++|.+....  ....+++|++|++++|.+++..+..+..+++|
T Consensus       325 ~~~~-----------------------~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  379 (562)
T 3a79_B          325 YSVF-----------------------AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL  379 (562)
T ss_dssp             HHHH-----------------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred             hhhh-----------------------ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC
Confidence            1110                       0123444444444443111  11344455555555555555444445555555


Q ss_pred             CeEeCcCCcCCCch--hhhHHhhhcCCCCcccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhhCCCCC
Q 037514          461 HSLDISYNHITGEI--KELTNAFSACNVSTLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHL  537 (636)
Q Consensus       461 ~~L~l~~n~l~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L  537 (636)
                      ++|++++|++++..  |..+.     .+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++|
T Consensus       380 ~~L~L~~N~l~~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L  452 (562)
T 3a79_B          380 QTLILQRNGLKNFFKVALMTK-----NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV  452 (562)
T ss_dssp             CEEECCSSCCCBTTHHHHTTT-----TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred             CEEECCCCCcCCcccchhhhc-----CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence            55555555554311  11111     124555555555555543332 355566666666666666655544432  466


Q ss_pred             CeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          538 RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       538 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      ++|++++|+++. +|..+..+++|++|++++|+++ .+|...|..+++|++|++++|+.
T Consensus       453 ~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          453 KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             SEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            666666666664 3333446666666666666666 45655566666666777776633

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7e-42  Score=372.37  Aligned_cols=446  Identities=19%  Similarity=0.219  Sum_probs=296.2

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|++++|.+++..|.+|+++++|++|++++|.++++.++.         |.++++|++|++++|.++
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV---------FLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT---------TTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH---------hCCCCCCCEEECCCCcCC
Confidence            3665553  79999999999999888889999999999999999999876543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEeCcCCcC--CC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL--VTLNLRSSQL--SG  223 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L--~~L~L~~n~l--~~  223 (636)
                      .++.   .  .+++|++|++++|++.+. .|..|.++++|++|++++|.+++.   .+..+++|  ++|++++|.+  .+
T Consensus       114 ~lp~---~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          114 NISC---C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             EECS---C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred             ccCc---c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence            8764   2  799999999999999874 468899999999999999999873   34555555  9999999998  65


Q ss_pred             CCCCCCCCCCC-CCCEEEcccccCccccch-hhhccccCCcccchhhc--cCc-----CcccccccccCCCCCCEEEccC
Q 037514          224 SIPKFPPGKMC-NLRRLDLAINGFSGEKEQ-FIQTLSGCNNSTLETLE--TQR-----MNGTISENIGQLAELVALNLYR  294 (636)
Q Consensus       224 ~~p~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~~~~~~L~~L~--~~~-----~~~~~~~~l~~l~~L~~L~l~~  294 (636)
                      ..|. .+..+. ..-.+++++|.+.+..+. .+..++     +|+.++  .++     +. .....+..+++|+.+++.+
T Consensus       186 ~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-----~L~~L~l~~n~~~~~~l~-~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          186 GETE-SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG-----HLQLSNIKLNDENCQRLM-TFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCC-EEEECCEEEEEEEECSSSCCCCCCEEEESSEE-----EEEEEEEECCSTTHHHHH-HHHHHHHSCSSCEEEEEEE
T ss_pred             cCcc-cccccCcceEEEEecCccchhhhhhhcccccc-----eEEEecccccccccchHH-HHHHHHhccCcceEEEecC
Confidence            4442 233322 111557777777664433 233344     555555  221     11 1234567888999999988


Q ss_pred             CcCccccChh--hhcCCCCCCEEEccCCCCccEEecCCCC-----CCCCCccEEEccCCCCCcCCC-hhhcC---CCCcc
Q 037514          295 NSWKGIITEN--HFQNLTKLNSLYLSSSNKSLVFTMRSDW-----IPPFSLRQMAINDCQLGSAFP-SWLKT---QASVF  363 (636)
Q Consensus       295 n~~~~~i~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~---~~~L~  363 (636)
                      +.+.+.....  .....++|++|++++|  ...+.++..+     ..+..|+.+++..+.+  .+| ..+..   ..+++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNL--TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEE--EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEecc--Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence            8766431111  1223459999999999  5555566655     5566666666666666  344 22222   24566


Q ss_pred             eeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCC
Q 037514          364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG  443 (636)
Q Consensus       364 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  443 (636)
                      +|++++|.+.....                            ...+++|++|++++|++++..|..+.++++|++|++++
T Consensus       335 ~L~l~~n~~~~~~~----------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          335 MLSISDTPFIHMVC----------------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             EEEEESSCCCCCCC----------------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred             EEEccCCCcccccC----------------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence            66666665542210                            13445555555555555555555555555666666666


Q ss_pred             CCCCCCc--chhhcCCCCCCeEeCcCCcCCCchhhh-HHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514          444 NRFLQLP--STSMGNLCNLHSLDISYNHITGEIKEL-TNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE  520 (636)
Q Consensus       444 n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (636)
                      |++++..  +..+..+++|++|++++|++++.+|.. +.     .+++|++|++++|++++..|..+.  ++|+.|++++
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~  459 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN  459 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC
Confidence            6555533  234555666666666666665433321 11     235556666666666654444333  5777777777


Q ss_pred             CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhh
Q 037514          521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHF  580 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  580 (636)
                      |++. .+|..+..+++|++|++++|+++.+.+..+..+++|+.|++++|++.+..+...|
T Consensus       460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          460 NRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             SCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             CcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            7776 5666666777788888888877765444477788888888888888776655433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.5e-40  Score=363.38  Aligned_cols=481  Identities=21%  Similarity=0.199  Sum_probs=376.2

Q ss_pred             ccC-ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514           69 PIP-EFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL  147 (636)
Q Consensus        69 ~~p-~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  147 (636)
                      .+| .+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++++.+.         |.++++|++|++++|++
T Consensus        66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---------f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG---------GTTCTTCCEEECTTSCC
T ss_pred             CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH---------hcCCCCCCEEECCCCcC
Confidence            454 68999999999999999999888889999999999999999999987653         89999999999999999


Q ss_pred             CCCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEeCcCCcCC
Q 037514          148 SKVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTL----VTLNLRSSQLS  222 (636)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L----~~L~L~~n~l~  222 (636)
                      +.++.  ..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+++..|..+..+.++    ..++++.|.+.
T Consensus       137 ~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          137 ASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             CCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             CCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            99854  578999999999999999976 457788999999999999999999888888766544    47889999887


Q ss_pred             CCCCCCCCCCCCCCCEEEcccccCcccc-chhhhccccCCcc----------------------cchhh-----c---cC
Q 037514          223 GSIPKFPPGKMCNLRRLDLAINGFSGEK-EQFIQTLSGCNNS----------------------TLETL-----E---TQ  271 (636)
Q Consensus       223 ~~~p~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~~~~~----------------------~L~~L-----~---~~  271 (636)
                      . ++.. ......++.+++.+|...... +..+..+......                      .+..+     .   ..
T Consensus       215 ~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          215 F-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             E-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             c-cCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence            4 3322 223345667777776544221 1222222210000                      00000     0   11


Q ss_pred             cCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcC
Q 037514          272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSA  351 (636)
Q Consensus       272 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  351 (636)
                      ......+..+....+++.+++.++.+... .  .+.....++.|++.+|.  ...   ........++.+.+.++.....
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~--~~~~~~~L~~L~l~~~~--~~~---~~~~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV-K--DFSYNFGWQHLELVNCK--FGQ---FPTLKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEEC-G--GGGSCCCCSEEEEESCE--ESS---CCCCBCTTCCEEEEESCCSCCB
T ss_pred             ccccchhhhhhhhcccccccccccccccc-c--ccccchhhhhhhccccc--ccC---cCcccchhhhhcccccccCCCC
Confidence            11122344456677899999999887763 2  46778899999999883  211   1223457899999999887643


Q ss_pred             CChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccC-C
Q 037514          352 FPSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELS-T  428 (636)
Q Consensus       352 ~~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~  428 (636)
                      .  ....+++|+.+++++|.+...  .+..+...  .+|+++++..+..... +..+..+++|+.+++.+++.....+ .
T Consensus       365 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~--~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~  439 (635)
T 4g8a_A          365 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT--ISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS  439 (635)
T ss_dssp             C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC--SCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred             c--ccccccccccchhhccccccccccccchhhh--hhhhhhhccccccccc-cccccccccccchhhhhcccccccccc
Confidence            3  345689999999999988644  45555555  8999999999987554 4567889999999999988765543 5


Q ss_pred             CCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCC-chhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514          429 SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG-EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL  507 (636)
Q Consensus       429 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  507 (636)
                      .+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.+ ..|..+.     .+++|++|+|++|++++..|..|
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-----~l~~L~~L~Ls~N~L~~l~~~~f  514 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAF  514 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----TCTTCCEEECTTSCCCEECTTTT
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh-----hccccCEEECCCCccCCcChHHH
Confidence            67889999999999999999999889999999999999998543 3454443     34788999999999998889999


Q ss_pred             cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCC-CCCCEEECcCCcceeecChhhh
Q 037514          508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQL-SEPYMLDLYGNSWEGVITEKHF  580 (636)
Q Consensus       508 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~  580 (636)
                      .++++|++|+|++|++.+..|..|.++++|++|++++|++++..|..+..+ ++|++|++++|++.+...-..|
T Consensus       515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~  588 (635)
T 4g8a_A          515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF  588 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence            999999999999999999889999999999999999999999999999988 6899999999999876554333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.1e-40  Score=347.66  Aligned_cols=372  Identities=19%  Similarity=0.200  Sum_probs=212.0

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV  156 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  156 (636)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.. +++..         +.++++|++|++++|.++...  +..
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---------~~~l~~L~~L~Ls~n~l~~~~--~~~   98 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---------FRGLSSLIILKLDYNQFLQLE--TGA   98 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---------TTTCTTCCEEECTTCTTCEEC--TTT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc---------ccccccCCEEeCCCCccCccC--hhh
Confidence            688999999999988888889999999999999888753 22211         666667777777776666552  245


Q ss_pred             hCCCCCCCEEEccCCcCCCCCC--cCccCCCCCCEEEccCCcCCcCCCcc-ccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFPQS--LPFLNFTSLSILELSYDNFNSQIPQW-LFNISTLVTLNLRSSQLSGSIPKFPPGKM  233 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  233 (636)
                      |+++++|++|++++|.+.+..+  ..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..|. .+..+
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l  177 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNF  177 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGG
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcc
Confidence            6666666666666666655322  22566666666666666666654544 55666666666666665543222 12222


Q ss_pred             --CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCC
Q 037514          234 --CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK  311 (636)
Q Consensus       234 --~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~  311 (636)
                        .+|+.|++++|.+.+..+..+..                   .....+..+++|++|++++|++.+            
T Consensus       178 ~~~~L~~L~l~~n~l~~~~~~~~~~-------------------~~~~~~~~~~~L~~L~Ls~n~l~~------------  226 (455)
T 3v47_A          178 QGKHFTLLRLSSITLQDMNEYWLGW-------------------EKCGNPFKNTSITTLDLSGNGFKE------------  226 (455)
T ss_dssp             TTCEEEEEECTTCBCTTCSTTCTTH-------------------HHHCCTTTTCEEEEEECTTSCCCH------------
T ss_pred             ccccccccccccCcccccchhhccc-------------------cccccccccceeeeEecCCCcccc------------
Confidence              34444444444443322211100                   000011122233333333333333            


Q ss_pred             CCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCC---CCcceeccccccCCCcchhhHHhhcCCCc
Q 037514          312 LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQ---ASVFKLTLSNAAISDTIPDWFWGVISQKL  388 (636)
Q Consensus       312 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~~~~~~~~~~~~~~~~~L  388 (636)
                                                             ..|..+...   .+++.|++++|...+...           
T Consensus       227 ---------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------  256 (455)
T 3v47_A          227 ---------------------------------------SMAKRFFDAIAGTKIQSLILSNSYNMGSSF-----------  256 (455)
T ss_dssp             ---------------------------------------HHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----------
T ss_pred             ---------------------------------------cchhhhhccccccceeeEeecccccccccc-----------
Confidence                                                   222222111   333333333333222100           


Q ss_pred             cEEECccCcCCccCCcccC--CCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514          389 SVIDLSNNKFFGGILSSLC--SLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS  466 (636)
Q Consensus       389 ~~L~ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  466 (636)
                           ..+.+.+..+..+.  ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       257 -----~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          257 -----GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             -----TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -----chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence                 00011111111111  12466666666666666666666666777777777777766666666667777777777


Q ss_pred             CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514          467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV  546 (636)
Q Consensus       467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  546 (636)
                      +|++++..+..+..     +++|++|++++|++++..|..+..+++|++|++++|++.+..+..+..+++|++|++++|+
T Consensus       332 ~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          332 QNFLGSIDSRMFEN-----LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             SSCCCEECGGGGTT-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCcChhHhcC-----cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            77766555554432     3556777777777776667777777888888888888776666666777888888888887


Q ss_pred             cccccc
Q 037514          547 MSRIIS  552 (636)
Q Consensus       547 l~~~~~  552 (636)
                      +++..|
T Consensus       407 l~~~~~  412 (455)
T 3v47_A          407 WDCSCP  412 (455)
T ss_dssp             BCCCTT
T ss_pred             cccCCC
Confidence            776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-38  Score=335.39  Aligned_cols=370  Identities=20%  Similarity=0.241  Sum_probs=187.4

Q ss_pred             CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC-CCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCE
Q 037514          135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF-PQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVT  213 (636)
Q Consensus       135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  213 (636)
                      ++|++|++++|.++..+  +..|+++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEEC--TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcCC--hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            45666666666665552  2455666666666666665543 23445566666666666666666555555666666666


Q ss_pred             EeCcCCcCCCCCCC-CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEc
Q 037514          214 LNLRSSQLSGSIPK-FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNL  292 (636)
Q Consensus       214 L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l  292 (636)
                      |++++|.+.+..+. ..+.++++|++|++++|.+.+..|..                          .+..+++|++|++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------~~~~l~~L~~L~L  161 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------------------FFLNMRRFHVLDL  161 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------------GGGGCTTCCEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------------------ccCCCCcccEEeC
Confidence            66666665542221 11455555555555555554332211                          1233345555555


Q ss_pred             cCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChh--------hcCCCCcce
Q 037514          293 YRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW--------LKTQASVFK  364 (636)
Q Consensus       293 ~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~  364 (636)
                      ++|++.+..+. .+..+                        ...+++.|++++|.+.+..+..        +..+++|++
T Consensus       162 ~~n~l~~~~~~-~l~~l------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~  216 (455)
T 3v47_A          162 TFNKVKSICEE-DLLNF------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT  216 (455)
T ss_dssp             TTCCBSCCCTT-TSGGG------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred             CCCcccccChh-hhhcc------------------------ccccccccccccCcccccchhhccccccccccccceeee
Confidence            55555543332 23222                        1134555555555555433322        234567778


Q ss_pred             eccccccCCCcchhhHHhhc-CCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCC--CCCCCCEEEC
Q 037514          365 LTLSNAAISDTIPDWFWGVI-SQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP--DCSRLTALDI  441 (636)
Q Consensus       365 L~L~~n~~~~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L  441 (636)
                      |++++|.+.+..|..+.... ..+|+.|++++|...+...              ..+.+....+..+.  ..++|++|++
T Consensus       217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (455)
T 3v47_A          217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDL  282 (455)
T ss_dssp             EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred             EecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEe
Confidence            88888877777776665431 1456666666665433211              01111111111111  1245666666


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      ++|.+.+..+..+..+++|++|++++|++++..+..+..     +++|++|++++|.+++..+..+.++++|++|++++|
T Consensus       283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred             cCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----cccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence            666666655555555666666666655555444433321     234455555555554444444455555555555555


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT  576 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  576 (636)
                      ++.+..|..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus       358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            5544444444555555555555555544444444444555555555555444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.7e-38  Score=332.60  Aligned_cols=404  Identities=20%  Similarity=0.206  Sum_probs=247.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCC-------------CCEEec
Q 037514           76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS-------------SRYLHL  142 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~-------------L~~L~L  142 (636)
                      +.++|++|++++|.+ +.+|.+|+++++|++|++++|.+++..+..         ++++++             +++|++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~---------~~~l~~L~~l~l~~c~~~~l~~L~l   78 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG---------NGEQREMAVSRLRDCLDRQAHELEL   78 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTT---------SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc---------cccchhcchhhhhhhhccCCCEEEe
Confidence            357999999999999 789999999999999999999887533321         666665             499999


Q ss_pred             CCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCC
Q 037514          143 EGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLS  222 (636)
Q Consensus       143 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~  222 (636)
                      ++|.+++++.+      .++|++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|+++
T Consensus        79 ~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           79 NNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             TTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred             cCCccccCCCC------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence            99999887642      3689999999999887 4433   4789999999999887 3432   268999999999998


Q ss_pred             CCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccC
Q 037514          223 GSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIIT  302 (636)
Q Consensus       223 ~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~  302 (636)
                      + +|.  ++++++|++|++++|++++ +|.                           .   ..+|++|++++|++.+ +|
T Consensus       145 ~-lp~--~~~l~~L~~L~l~~N~l~~-lp~---------------------------~---~~~L~~L~L~~n~l~~-l~  189 (454)
T 1jl5_A          145 K-LPE--LQNSSFLKIIDVDNNSLKK-LPD---------------------------L---PPSLEFIAAGNNQLEE-LP  189 (454)
T ss_dssp             S-CCC--CTTCTTCCEEECCSSCCSC-CCC---------------------------C---CTTCCEEECCSSCCSS-CC
T ss_pred             C-Ccc--cCCCCCCCEEECCCCcCcc-cCC---------------------------C---cccccEEECcCCcCCc-Cc
Confidence            4 773  7899999999999998874 221                           1   1378999999999887 55


Q ss_pred             hhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHh
Q 037514          303 ENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWG  382 (636)
Q Consensus       303 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~  382 (636)
                        .++++++|+.|++++|.+..   ++.   ...+|++|++++|.+. .+|. +..+++|++|++++|++.+. |..   
T Consensus       190 --~~~~l~~L~~L~l~~N~l~~---l~~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l-~~~---  255 (454)
T 1jl5_A          190 --ELQNLPFLTAIYADNNSLKK---LPD---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL-PDL---  255 (454)
T ss_dssp             --CCTTCTTCCEEECCSSCCSS---CCC---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC-CSC---
T ss_pred             --cccCCCCCCEEECCCCcCCc---CCC---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc-ccc---
Confidence              48889999999999884332   121   1248888899888887 5563 77888899999998888763 322   


Q ss_pred             hcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCe
Q 037514          383 VISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHS  462 (636)
Q Consensus       383 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  462 (636)
                      .  ++|++|++++|++++ +|..   +++|++|++++|++++. +..   .++|++|++++|.+++...    ..++|++
T Consensus       256 ~--~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~~----~~~~L~~  321 (454)
T 1jl5_A          256 P--PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLCD----LPPSLEE  321 (454)
T ss_dssp             C--TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEECC----CCTTCCE
T ss_pred             c--cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcccC----CcCcCCE
Confidence            1  688888888888876 3332   37888888888888752 221   2578888888888876431    1257888


Q ss_pred             EeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeE
Q 037514          463 LDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRAL  540 (636)
Q Consensus       463 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L  540 (636)
                      |++++|++++ +|..        +++|++|++++|+++ .+|.   .+++|++|++++|++.+  .+|..+..      |
T Consensus       322 L~Ls~N~l~~-lp~~--------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L  382 (454)
T 1jl5_A          322 LNVSNNKLIE-LPAL--------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED------L  382 (454)
T ss_dssp             EECCSSCCSC-CCCC--------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E
T ss_pred             EECCCCcccc-cccc--------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh------h
Confidence            8888888875 3331        367788888888888 4555   46788888888888887  56654432      2


Q ss_pred             eCcCccccccccccccCCCCCCEEECcCCccee--ecChhhhcCCCCCCeeeCCCCCCC
Q 037514          541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG--VITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                        +.|...+.+|..   +++|++|++++|++++  .+|       .+++.|++++|.+.
T Consensus       383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-------~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-------ESVEDLRMNSERVV  429 (454)
T ss_dssp             --ECCC-----------------------------------------------------
T ss_pred             --hhcccccccccc---cCcCCEEECCCCcCCccccch-------hhHhheeCcCcccC
Confidence              345555555543   4789999999999986  444       35677788887543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-37  Score=327.64  Aligned_cols=374  Identities=19%  Similarity=0.158  Sum_probs=275.1

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514           70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK  149 (636)
Q Consensus        70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  149 (636)
                      .+..+.++++|++|++++|.+++. | .++++++|++|++++|.+++++            ++.+++|++|++++|.+++
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~------------~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD------------LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC------------CTTCTTCSEEECCSSCCSC
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc------------cccCCCCCEEECcCCCCce
Confidence            345677889999999999999864 5 6999999999999999998853            7788999999999999888


Q ss_pred             CCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC
Q 037514          150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP  229 (636)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  229 (636)
                      .     .++++++|++|++++|++++. +  +..+++|++|++++|.+++ ++  ++++++|++|++++|+..+.   ++
T Consensus       100 ~-----~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~---~~  165 (457)
T 3bz5_A          100 L-----DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK---LD  165 (457)
T ss_dssp             C-----CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC---CC
T ss_pred             e-----ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc---cc
Confidence            6     277889999999999988874 3  7888899999999998888 33  77888899999988865545   34


Q ss_pred             CCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCC
Q 037514          230 PGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNL  309 (636)
Q Consensus       230 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l  309 (636)
                      +..+++|++|++++|.+++.                            |  ++.+++|+.|++++|++++.    .+..+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~l----------------------------~--l~~l~~L~~L~l~~N~l~~~----~l~~l  211 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITEL----------------------------D--VSQNKLLNRLNCDTNNITKL----DLNQN  211 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCCC----------------------------C--CTTCTTCCEEECCSSCCSCC----CCTTC
T ss_pred             cccCCcCCEEECCCCcccee----------------------------c--cccCCCCCEEECcCCcCCee----ccccC
Confidence            67788888888888877642                            1  34456788888888877763    25666


Q ss_pred             CCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCcc
Q 037514          310 TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLS  389 (636)
Q Consensus       310 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~  389 (636)
                      ++|+.|++++|                          .+.+ +|  +..+++|++|++++|++++..+..+     ++|+
T Consensus       212 ~~L~~L~Ls~N--------------------------~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l-----~~L~  257 (457)
T 3bz5_A          212 IQLTFLDCSSN--------------------------KLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL-----SKLT  257 (457)
T ss_dssp             TTCSEEECCSS--------------------------CCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC-----TTCC
T ss_pred             CCCCEEECcCC--------------------------cccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC-----CCCC
Confidence            66666666666                          3433 23  4455666666666666665543222     5666


Q ss_pred             EEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCc
Q 037514          390 VIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH  469 (636)
Q Consensus       390 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  469 (636)
                      .|++++|              +|+.|++++|.+.+.+|  +..+++|++|++++|...+..+.   ..++|+.|++++| 
T Consensus       258 ~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-  317 (457)
T 3bz5_A          258 TLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-  317 (457)
T ss_dssp             EEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-
T ss_pred             EEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-
Confidence            6666554              34556667776665555  45677788888888876665552   4466777776655 


Q ss_pred             CCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccc
Q 037514          470 ITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       470 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  549 (636)
                                       ++|++|++++|++++. +  ++.+++|+.|++++|++.+        ++.|+.|++++|.+.+
T Consensus       318 -----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g  369 (457)
T 3bz5_A          318 -----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA  369 (457)
T ss_dssp             -----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred             -----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence                             4568999999999864 3  8889999999999998875        3467777888898887


Q ss_pred             cccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCC
Q 037514          550 IISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTIS  592 (636)
Q Consensus       550 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls  592 (636)
                      .     ..+..|..+++++|+++|.+|...+....++.....+
T Consensus       370 ~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          370 E-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             E-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred             c-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence            5     2455678889999999999998766665655554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.3e-37  Score=324.29  Aligned_cols=394  Identities=22%  Similarity=0.261  Sum_probs=266.9

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCC-------------CEEeCcCCCCCcccccccccccccccCCCC
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNL-------------QYLDLSYQNLKEYQITKELWVSDLIWLPDL  134 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l  134 (636)
                      +.+|+.++++++|++|++++|.+.|.+|.+++++++|             ++|++++|.+++++.           +  .
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-----------~--~   90 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-----------L--P   90 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-----------C--C
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-----------C--c
Confidence            6799999999999999999999999999999999875             999999999988653           2  3


Q ss_pred             CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEE
Q 037514          135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTL  214 (636)
Q Consensus       135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  214 (636)
                      ++|++|++++|.+++++.      ..++|++|++++|++.+....    .++|++|++++|.+++ +| .++++++|++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII  158 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence            689999999999998754      248999999999998864321    1799999999999998 77 59999999999


Q ss_pred             eCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccC
Q 037514          215 NLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYR  294 (636)
Q Consensus       215 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~  294 (636)
                      ++++|++++ +|..    .++|++|++++|.+.+ +|                            .++.+++|++|++++
T Consensus       159 ~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~----------------------------~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          159 DVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP----------------------------ELQNLPFLTAIYADN  204 (454)
T ss_dssp             ECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC----------------------------CCTTCTTCCEEECCS
T ss_pred             ECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc----------------------------cccCCCCCCEEECCC
Confidence            999999984 6643    3699999999998875 22                            245667899999999


Q ss_pred             CcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCC
Q 037514          295 NSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD  374 (636)
Q Consensus       295 n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~  374 (636)
                      |++.+ +|.    ..++|++|++++|.+.   .++ .+..+++|++|++++|.+.+ +|.   ..++|++|++++|++.+
T Consensus       205 N~l~~-l~~----~~~~L~~L~l~~n~l~---~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          205 NSLKK-LPD----LPLSLESIVAGNNILE---ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             SCCSS-CCC----CCTTCCEEECCSSCCS---SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred             CcCCc-CCC----CcCcccEEECcCCcCC---ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence            99887 554    2358999999998443   334 47788899999999998875 343   24789999999999987


Q ss_pred             cchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhh
Q 037514          375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSM  454 (636)
Q Consensus       375 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  454 (636)
                      . |...     ++|++|++++|++++.. .   ..++|++|++++|++++ ++.   ..++|++|++++|++++++.   
T Consensus       272 l-~~~~-----~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~lp~---  334 (454)
T 1jl5_A          272 L-PELP-----QSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIELPA---  334 (454)
T ss_dssp             C-CCCC-----TTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSCCCC---
T ss_pred             c-Cccc-----CcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccccccc---
Confidence            3 3321     78999999999987632 1   12689999999999875 222   12589999999999998554   


Q ss_pred             cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC--CCchhhcCCCCCCEEeCcCCccCCccChhhh
Q 037514          455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG--NLPDSLGNLLCLEYLGLSENSFLGSLPTSIG  532 (636)
Q Consensus       455 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~  532 (636)
                       .+++|++|++++|++++ +|.        .+++|++|++++|++++  .+|..+..        ++.|.+.+.+|..  
T Consensus       335 -~~~~L~~L~L~~N~l~~-lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~--  394 (454)
T 1jl5_A          335 -LPPRLERLIASFNHLAE-VPE--------LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL--  394 (454)
T ss_dssp             -CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred             -cCCcCCEEECCCCcccc-ccc--------hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--
Confidence             26899999999999984 443        13788999999999997  56655442        2346667777763  


Q ss_pred             CCCCCCeEeCcCccccc--cccccccCCCCCCEEECcCCcceeecCh
Q 037514          533 NLSHLRALYLSFNVMSR--IISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       533 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                       +++|++|++++|.+++  .+|.      +++.|.+.+|.+.+.++.
T Consensus       395 -~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          395 -PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             -----------------------------------------------
T ss_pred             -cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence             5789999999999987  4443      466677888887765544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.4e-35  Score=313.09  Aligned_cols=346  Identities=25%  Similarity=0.349  Sum_probs=185.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514           76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ  155 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  155 (636)
                      .++++++|+++++.+.. +| .+..+++|++|++++|.++++++           +.++++|++|++++|.+...+    
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~----  106 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-----------LKNLTKLVDILMNNNQIADIT----  106 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG----
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-----------hhccccCCEEECCCCccccCh----
Confidence            35688888888888764 44 37788888888888888776543           666777777777777766652    


Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .++++++|++|++++|.+.+..+  +.++++|++|++++|.+.+ ++ .+.++++|++|+++ +.+.+.   .++.++++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~---~~~~~l~~  178 (466)
T 1o6v_A          107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL---KPLANLTT  178 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC---GGGTTCTT
T ss_pred             hhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc---hhhccCCC
Confidence            26666667777776666665432  5666666666666666655 22 35556666666654 222211   12445555


Q ss_pred             CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514          236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL  315 (636)
Q Consensus       236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L  315 (636)
                      |++|++++|.+.+.                             ..+..+++|++|++++|.+.+..+   ++.+++|+.|
T Consensus       179 L~~L~l~~n~l~~~-----------------------------~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L  226 (466)
T 1o6v_A          179 LERLDISSNKVSDI-----------------------------SVLAKLTNLESLIATNNQISDITP---LGILTNLDEL  226 (466)
T ss_dssp             CCEEECCSSCCCCC-----------------------------GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred             CCEEECcCCcCCCC-----------------------------hhhccCCCCCEEEecCCccccccc---ccccCCCCEE
Confidence            55555555544321                             012223344444444444433211   2233333333


Q ss_pred             EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514          316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN  395 (636)
Q Consensus       316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~  395 (636)
                      +++                                                  +|.+.+.  ..+..+  ++|++|++++
T Consensus       227 ~l~--------------------------------------------------~n~l~~~--~~l~~l--~~L~~L~l~~  252 (466)
T 1o6v_A          227 SLN--------------------------------------------------GNQLKDI--GTLASL--TNLTDLDLAN  252 (466)
T ss_dssp             ECC--------------------------------------------------SSCCCCC--GGGGGC--TTCSEEECCS
T ss_pred             ECC--------------------------------------------------CCCcccc--hhhhcC--CCCCEEECCC
Confidence            333                                                  3333221  112222  4555555555


Q ss_pred             CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchh
Q 037514          396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK  475 (636)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  475 (636)
                      |.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|++.+..+  +..+++|++|++++|++++..+
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            55544322  4555556666666655553322  4555566666666666555443  4555566666666665554433


Q ss_pred             hhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccc
Q 037514          476 ELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       476 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  549 (636)
                        +   .  .+++|++|++++|++++.  ..+..+++|+.|++++|++.+..|  +..+++|++|++++|++++
T Consensus       327 --~---~--~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 --V---S--SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --G---G--GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             --h---c--cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence              1   1  124555555555555532  245555556666666665555444  4555555556665555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5e-35  Score=310.62  Aligned_cols=198  Identities=25%  Similarity=0.338  Sum_probs=166.5

Q ss_pred             hcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCC
Q 037514          356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR  435 (636)
Q Consensus       356 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  435 (636)
                      +..+++|++|++++|.+.+..+  +..+  ++|++|++++|++++.  ..+..+++|++|++++|.+.+..+  +..+++
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  266 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP--LGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK  266 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             hccCCCCCEEEecCCccccccc--cccc--CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence            4556666666666666666555  3344  8999999999999764  467889999999999999986554  889999


Q ss_pred             CCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCE
Q 037514          436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY  515 (636)
Q Consensus       436 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  515 (636)
                      |++|++++|.+++.++  +..+++|++|++++|++.+..+  +   .  .+++|++|++++|++++..|  +..+++|+.
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I---S--NLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G---G--GCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h---c--CCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            9999999999998776  8899999999999999987554  2   2  24888999999999997665  789999999


Q ss_pred             EeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       516 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      |++++|++.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++ +|.
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~  392 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV  392 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence            99999999864  468999999999999999999877  8999999999999999986 454

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-35  Score=309.44  Aligned_cols=360  Identities=16%  Similarity=0.147  Sum_probs=273.7

Q ss_pred             CCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEc
Q 037514           89 SFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHL  168 (636)
Q Consensus        89 ~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  168 (636)
                      ...+..+..++++++|++|++++|.+++++.           +..+++|++|++++|.+++++     ++.+++|++|++
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~L   92 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDMTG-----------IEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLAC   92 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCCTT-----------GGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEEC
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccChh-----------hcccCCCCEEEccCCcCCeEc-----cccCCCCCEEEC
Confidence            3444556678899999999999999987642           788899999999999988862     778899999999


Q ss_pred             cCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcc
Q 037514          169 SNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       169 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~  248 (636)
                      ++|.+++. +  +.++++|++|++++|.+++ +|  ++++++|++|++++|++++    ++++++++|++|++++|...+
T Consensus        93 s~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~----l~l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A           93 DSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC----CCCTTCTTCCEEECTTCSCCC
T ss_pred             cCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce----eccccCCcCCEEECCCCCccc
Confidence            99998875 2  7888999999999998887 44  7888899999999998885    347788888888888885433


Q ss_pred             ccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEec
Q 037514          249 EKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTM  328 (636)
Q Consensus       249 ~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~  328 (636)
                      .+                             .++.+++|++|++++|++++ ++   +..+++|+.|++++|        
T Consensus       163 ~~-----------------------------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N--------  201 (457)
T 3bz5_A          163 KL-----------------------------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTN--------  201 (457)
T ss_dssp             CC-----------------------------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSS--------
T ss_pred             cc-----------------------------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCC--------
Confidence            21                             13455678888888888776 33   556666666666665        


Q ss_pred             CCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCC
Q 037514          329 RSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCS  408 (636)
Q Consensus       329 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  408 (636)
                                        .+.+.   .+..+++|++|++++|++++. |  +..+  ++|++|++++|++++..   ...
T Consensus       202 ------------------~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l--~~L~~L~l~~N~l~~~~---~~~  252 (457)
T 3bz5_A          202 ------------------NITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPL--TQLTYFDCSVNPLTELD---VST  252 (457)
T ss_dssp             ------------------CCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTC--TTCSEEECCSSCCSCCC---CTT
T ss_pred             ------------------cCCee---ccccCCCCCEEECcCCccccc-C--cccc--CCCCEEEeeCCcCCCcC---HHH
Confidence                              44332   256678888888888888874 4  4444  78888888888887653   456


Q ss_pred             CCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCc
Q 037514          409 LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVST  488 (636)
Q Consensus       409 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  488 (636)
                      +++|+.|++++|              +|++|++++|.+.+..|  ++.+++|+.|++++|+..+.+|.        ..++
T Consensus       253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--------~~~~  308 (457)
T 3bz5_A          253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--------QAAG  308 (457)
T ss_dssp             CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--------TTCC
T ss_pred             CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--------CCCc
Confidence            777888887665              45667788888776655  56789999999999987766653        1244


Q ss_pred             ccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514          489 LETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG  568 (636)
Q Consensus       489 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  568 (636)
                      |+.|++++|             ++|++|++++|++++. +  +.++++|+.|++++|++++        ++.|..|++++
T Consensus       309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~  364 (457)
T 3bz5_A          309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN  364 (457)
T ss_dssp             CSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred             ceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence            555555444             7899999999999974 3  8899999999999999987        25677788999


Q ss_pred             CcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514          569 NSWEGVITEKHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       569 n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      |.+.|.      ..+..|+.++++.|+++.
T Consensus       365 n~l~g~------~~~~~l~~l~l~~N~l~g  388 (457)
T 3bz5_A          365 NNFEAE------GQTITMPKETLTNNSLTI  388 (457)
T ss_dssp             TSEEEE------EEEEECCCBCCBTTBEEE
T ss_pred             CcEEec------ceeeecCccccccCcEEE
Confidence            999875      255678899999997653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=310.92  Aligned_cols=312  Identities=19%  Similarity=0.202  Sum_probs=276.4

Q ss_pred             CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514          285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK  364 (636)
Q Consensus       285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  364 (636)
                      ++++.|++++|++++..+ ..|.++++|++|++++|  .+....+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCcEEECCCCccceECH-hHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            478999999999998444 48999999999999999  666777888899999999999999998777778899999999


Q ss_pred             eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514          365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN  444 (636)
Q Consensus       365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  444 (636)
                      |++++|.+.+..+..+..+  ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus       109 L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDL--YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             EECTTSCCCEECTTTTTTC--TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             EECCCCccccCChhHcccc--ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            9999999998888888887  89999999999999888889999999999999999998766667899999999999999


Q ss_pred             CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514          445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL  524 (636)
Q Consensus       445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~  524 (636)
                      .+.+..+..+..+++|++|++++|+..+.++.....     ..+|++|++++|++++..+..+..+++|+.|+|++|.+.
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-----GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-----TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCccccc-----CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            999988888999999999999999887776654332     247899999999999665578999999999999999999


Q ss_pred             CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccccccc
Q 037514          525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRH  604 (636)
Q Consensus       525 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~  604 (636)
                      +..+..|..+++|++|++++|++++..|..|..+++|+.|++++|+++ .++...|..+++|++|++++|+  ..|+|..
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~--l~c~c~~  338 (477)
T 2id5_A          262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP--LACDCRL  338 (477)
T ss_dssp             EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSC--EECSGGG
T ss_pred             ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCC--ccCccch
Confidence            888888999999999999999999999999999999999999999998 4788889999999999999995  4566666


Q ss_pred             ccccC
Q 037514          605 DWIAP  609 (636)
Q Consensus       605 ~~~~~  609 (636)
                      .|...
T Consensus       339 ~~~~~  343 (477)
T 2id5_A          339 LWVFR  343 (477)
T ss_dssp             HHHHT
T ss_pred             HhHHh
Confidence            66543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=299.75  Aligned_cols=323  Identities=18%  Similarity=0.190  Sum_probs=235.1

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      +.++.++++++ .+|..+.  +++++|++++|.++++.+..         |.++++|++|++++|.++.+.  +..|.++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~~~~--~~~~~~l   79 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDE---------FASFPHLEELELNENIVSAVE--PGAFNNL   79 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT---------TTTCTTCCEEECTTSCCCEEC--TTTTTTC
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhH---------ccCCCCCCEEECCCCccCEeC--hhhhhCC
Confidence            67888888887 5666553  57899999999888875432         777888888888888777762  2567777


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD  240 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  240 (636)
                      ++|++|+|++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+ ..+.++++|++|+
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  158 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLT  158 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEE
Confidence            888888888887777666677777778888887777777667777777777777777777764322 2466667777777


Q ss_pred             cccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCC
Q 037514          241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSS  320 (636)
Q Consensus       241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n  320 (636)
                      +++|.+++..+.                           .+..+++|+.|++++|.+.+. +...|..+++|+.|++++|
T Consensus       159 l~~n~l~~~~~~---------------------------~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          159 LEKCNLTSIPTE---------------------------ALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             EESCCCSSCCHH---------------------------HHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECC
T ss_pred             CCCCcCcccChh---------------------------HhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCC
Confidence            776666543322                           233344666666666666653 3335556666666666555


Q ss_pred             CCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCc
Q 037514          321 NKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFG  400 (636)
Q Consensus       321 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  400 (636)
                                                ...+.++.......+|++|++++|.+++..+..+..+  ++|++|++++|.+++
T Consensus       211 --------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          211 --------------------------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPIST  262 (477)
T ss_dssp             --------------------------TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEECCSSCCCE
T ss_pred             --------------------------ccccccCcccccCccccEEECcCCcccccCHHHhcCc--cccCeeECCCCcCCc
Confidence                                      4334444444444578888888888876666667666  788888888888887


Q ss_pred             cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCch
Q 037514          401 GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI  474 (636)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  474 (636)
                      ..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++.++..|..+++|++|++++|++....
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            77778888899999999999998888888889999999999999999888888888899999999999887543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.8e-33  Score=286.99  Aligned_cols=310  Identities=19%  Similarity=0.225  Sum_probs=190.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514           76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ  155 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  155 (636)
                      .++++++|+++++.+....+..+.++++|++|++++|.++++++..         +.++++|++|++++|.++..+.  .
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~--~  111 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA---------FAYAHTIQKLYMGFNAIRYLPP--H  111 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT---------TTTCTTCCEEECCSSCCCCCCT--T
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh---------ccCCCCcCEEECCCCCCCcCCH--H
Confidence            4578999999999888655555788999999999999888766532         7788888888888888877743  5


Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .++++++|++|++++|.+....+..|.++++|++|++++|.+.+..|..+.++++|++|++++|++++    .+++.+++
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~  187 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPS  187 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----CCGGGCTT
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----cccccccc
Confidence            67778888888888888876666667778888888888888877667777777888888888877763    24556677


Q ss_pred             CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514          236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL  315 (636)
Q Consensus       236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L  315 (636)
                      |++|++++|.+.+.                                ....+|++|++++|.+... +.   ...+     
T Consensus       188 L~~L~l~~n~l~~~--------------------------------~~~~~L~~L~l~~n~l~~~-~~---~~~~-----  226 (390)
T 3o6n_A          188 LFHANVSYNLLSTL--------------------------------AIPIAVEELDASHNSINVV-RG---PVNV-----  226 (390)
T ss_dssp             CSEEECCSSCCSEE--------------------------------ECCSSCSEEECCSSCCCEE-EC---CCCS-----
T ss_pred             cceeeccccccccc--------------------------------CCCCcceEEECCCCeeeec-cc---cccc-----
Confidence            77777776665421                                1123566666666655542 11   1122     


Q ss_pred             EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514          316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN  395 (636)
Q Consensus       316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~  395 (636)
                                           +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+  ++|++|++++
T Consensus       227 ---------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~  281 (390)
T 3o6n_A          227 ---------------------ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISN  281 (390)
T ss_dssp             ---------------------SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECCS
T ss_pred             ---------------------cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc--ccCCEEECCC
Confidence                                 344444444444432  344555555555555555555555554444  4555555555


Q ss_pred             CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCC
Q 037514          396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHIT  471 (636)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  471 (636)
                      |++++. +..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...   +..+++|+.|++++|++.
T Consensus       282 n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          282 NRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             SCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             CcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCcc
Confidence            555432 223344455555555555544 23333444455555555555554432   334445555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-32  Score=278.18  Aligned_cols=307  Identities=24%  Similarity=0.332  Sum_probs=184.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++++.           +.++++|++|++++|.++.+   
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-----------~~~l~~L~~L~L~~n~i~~~---  103 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-----------LSNLVKLTNLYIGTNKITDI---  103 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCC---
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-----------hhcCCcCCEEEccCCcccCc---
Confidence            4466788999999988874 44 48888999999999888877653           77788888888888887775   


Q ss_pred             hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514          154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM  233 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  233 (636)
                       ..+.++++|++|++++|.+....+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+. +  ++..+
T Consensus       104 -~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~--~~~~l  176 (347)
T 4fmz_A          104 -SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-T--PIANL  176 (347)
T ss_dssp             -GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-G--GGGGC
T ss_pred             -hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-h--hhccC
Confidence             257778888888888887775433  6777777777777775554333 367777777777777776632 2  15566


Q ss_pred             CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCC
Q 037514          234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN  313 (636)
Q Consensus       234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~  313 (636)
                      ++|++|++++|.+.+..+                             +..+++|+.+++++|.+.+. +  .+..+++|+
T Consensus       177 ~~L~~L~l~~n~l~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~-~--~~~~~~~L~  224 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP-----------------------------LASLTSLHYFTAYVNQITDI-T--PVANMTRLN  224 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG-----------------------------GGGCTTCCEEECCSSCCCCC-G--GGGGCTTCC
T ss_pred             CCCCEEEccCCccccccc-----------------------------ccCCCccceeecccCCCCCC-c--hhhcCCcCC
Confidence            666666666666543211                             23344566666666655542 1  144445555


Q ss_pred             EEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEEC
Q 037514          314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDL  393 (636)
Q Consensus       314 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l  393 (636)
                      +|++++|                          .+.+..+  +..+                          ++|++|++
T Consensus       225 ~L~l~~n--------------------------~l~~~~~--~~~l--------------------------~~L~~L~l  250 (347)
T 4fmz_A          225 SLKIGNN--------------------------KITDLSP--LANL--------------------------SQLTWLEI  250 (347)
T ss_dssp             EEECCSS--------------------------CCCCCGG--GTTC--------------------------TTCCEEEC
T ss_pred             EEEccCC--------------------------ccCCCcc--hhcC--------------------------CCCCEEEC
Confidence            5554444                          2221111  3333                          44444444


Q ss_pred             ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCc
Q 037514          394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE  473 (636)
Q Consensus       394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  473 (636)
                      ++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus       251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            44444332  2344555555555555555432  2355556666666666666655555566666666666666666544


Q ss_pred             hhhhHHhhhcCCCCcccEEEcccCcCC
Q 037514          474 IKELTNAFSACNVSTLETLDLASNKLG  500 (636)
Q Consensus       474 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~  500 (636)
                      .|  +.     .+++|++|++++|+++
T Consensus       327 ~~--~~-----~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          327 RP--LA-----SLSKMDSADFANQVIK  346 (347)
T ss_dssp             GG--GG-----GCTTCSEESSSCC---
T ss_pred             cC--hh-----hhhccceeehhhhccc
Confidence            44  11     1245566666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-32  Score=281.26  Aligned_cols=321  Identities=20%  Similarity=0.177  Sum_probs=187.2

Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL  239 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  239 (636)
                      ++++++|++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+. +...++++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEE
Confidence            45666666666666555444456666666666666666655555566666666666666665532 22234555555555


Q ss_pred             EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514          240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS  319 (636)
Q Consensus       240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~  319 (636)
                      ++++|.+....+.                           .+..+++|++|++++|.+.+. +...+..+++|++|++++
T Consensus       123 ~L~~n~l~~l~~~---------------------------~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~  174 (390)
T 3o6n_A          123 VLERNDLSSLPRG---------------------------IFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSS  174 (390)
T ss_dssp             ECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCS
T ss_pred             ECCCCccCcCCHH---------------------------HhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCC
Confidence            5555554421111                           122333455555555554442 222344444444444443


Q ss_pred             CCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCC
Q 037514          320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF  399 (636)
Q Consensus       320 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  399 (636)
                      |                                                  .+++....   .+  ++|++|++++|.++
T Consensus       175 n--------------------------------------------------~l~~~~~~---~l--~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          175 N--------------------------------------------------RLTHVDLS---LI--PSLFHANVSYNLLS  199 (390)
T ss_dssp             S--------------------------------------------------CCSBCCGG---GC--TTCSEEECCSSCCS
T ss_pred             C--------------------------------------------------cCCccccc---cc--cccceeeccccccc
Confidence            3                                                  33322111   11  45666666666554


Q ss_pred             ccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHH
Q 037514          400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN  479 (636)
Q Consensus       400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  479 (636)
                      +.     ...++|++|++++|.+... +..  ..++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+.
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            32     2234666677776666533 221  235677777777777664  2466777777777777777766555443


Q ss_pred             hhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514          480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS  559 (636)
Q Consensus       480 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  559 (636)
                      .     +++|++|++++|+++ .++..+..+++|+.|++++|++. .+|..+..+++|++|++++|+++...   +..++
T Consensus       270 ~-----l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~  339 (390)
T 3o6n_A          270 K-----MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH  339 (390)
T ss_dssp             T-----CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             c-----cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhc
Confidence            2     356677777777776 34555667788888888888877 56666777888888888888887652   56778


Q ss_pred             CCCEEECcCCcceeecChhhhcCCC
Q 037514          560 EPYMLDLYGNSWEGVITEKHFRNLS  584 (636)
Q Consensus       560 ~L~~L~L~~n~l~~~~~~~~~~~l~  584 (636)
                      +|+.|++++|++.+......+..+.
T Consensus       340 ~L~~L~l~~N~~~~~~~~~~~~~~~  364 (390)
T 3o6n_A          340 TLKNLTLSHNDWDCNSLRALFRNVA  364 (390)
T ss_dssp             CCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred             cCCEEEcCCCCccchhHHHHHHHHH
Confidence            8888888888887654444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-31  Score=271.57  Aligned_cols=82  Identities=28%  Similarity=0.333  Sum_probs=43.3

Q ss_pred             CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514          487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL  566 (636)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  566 (636)
                      ++|++|++++|++++.  ..+..+++|+.|++++|++.+..|..+..+++|++|++++|++++..|  +..+++|++|++
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence            4445555555554432  234555555555555555555555555555566666666665555444  555566666666


Q ss_pred             cCCcce
Q 037514          567 YGNSWE  572 (636)
Q Consensus       567 ~~n~l~  572 (636)
                      ++|+++
T Consensus       341 ~~N~i~  346 (347)
T 4fmz_A          341 ANQVIK  346 (347)
T ss_dssp             SCC---
T ss_pred             hhhccc
Confidence            665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.6e-32  Score=296.52  Aligned_cols=311  Identities=19%  Similarity=0.218  Sum_probs=216.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514           76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ  155 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  155 (636)
                      .+++++.+++++|.+....+..|.++++|++|++++|.++++++..         +.++++|++|++++|.++..+.  .
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~--~  117 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA---------FAYAHTIQKLYMGFNAIRYLPP--H  117 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT---------TTTCTTCCEEECCSSCCCCCCT--T
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH---------hcCCCCCCEEECCCCcCCCCCH--H
Confidence            3578899999999988766666888999999999999988876532         7888888888888888888743  5


Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .|+++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+    .+++.+++
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~l~~  193 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPS  193 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----CCGGGCTT
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----cChhhhhh
Confidence            67888888888888888887777777888888888888888888777778888888888888887774    34566777


Q ss_pred             CCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514          236 LRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL  315 (636)
Q Consensus       236 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L  315 (636)
                      |++|++++|.+.+.                                ....+|+.|++++|.+....+.    ..+     
T Consensus       194 L~~L~l~~n~l~~l--------------------------------~~~~~L~~L~ls~n~l~~~~~~----~~~-----  232 (597)
T 3oja_B          194 LFHANVSYNLLSTL--------------------------------AIPIAVEELDASHNSINVVRGP----VNV-----  232 (597)
T ss_dssp             CSEEECCSSCCSEE--------------------------------ECCTTCSEEECCSSCCCEEECS----CCS-----
T ss_pred             hhhhhcccCccccc--------------------------------cCCchhheeeccCCcccccccc----cCC-----
Confidence            77777777765531                                1123566666666666542111    112     


Q ss_pred             EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECcc
Q 037514          316 YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN  395 (636)
Q Consensus       316 ~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~  395 (636)
                                           +|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..+..+  ++|++|++++
T Consensus       233 ---------------------~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~  287 (597)
T 3oja_B          233 ---------------------ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISN  287 (597)
T ss_dssp             ---------------------CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECTT
T ss_pred             ---------------------CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc--cCCCEEECCC
Confidence                                 44445555555543  3556666777777777777776666666666  6677777777


Q ss_pred             CcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCC
Q 037514          396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG  472 (636)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  472 (636)
                      |.+++. |..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.+   +..+++|+.|++++|++.+
T Consensus       288 N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          288 NRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            766553 444555667777777777766 45555566667777777777766553   4456667777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3e-31  Score=290.07  Aligned_cols=321  Identities=20%  Similarity=0.185  Sum_probs=198.2

Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL  239 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  239 (636)
                      +.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+ +|...++++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEE
Confidence            4566777777777666655556667777777777777766556666677777777777776664 332235666666666


Q ss_pred             EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514          240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS  319 (636)
Q Consensus       240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~  319 (636)
                      ++++|.+.+..+.                           .++.+++|++|++++|.+.+..+ ..|..+++|+.|++++
T Consensus       129 ~L~~n~l~~l~~~---------------------------~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~  180 (597)
T 3oja_B          129 VLERNDLSSLPRG---------------------------IFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSS  180 (597)
T ss_dssp             ECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTT
T ss_pred             EeeCCCCCCCCHH---------------------------HhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcC
Confidence            6666655532221                           12334455555555555554322 2445555555554444


Q ss_pred             CCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCC
Q 037514          320 SNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF  399 (636)
Q Consensus       320 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  399 (636)
                      |                                                  .+++.....   +  ++|+.|++++|.++
T Consensus       181 N--------------------------------------------------~l~~~~~~~---l--~~L~~L~l~~n~l~  205 (597)
T 3oja_B          181 N--------------------------------------------------RLTHVDLSL---I--PSLFHANVSYNLLS  205 (597)
T ss_dssp             S--------------------------------------------------CCSBCCGGG---C--TTCSEEECCSSCCS
T ss_pred             C--------------------------------------------------CCCCcChhh---h--hhhhhhhcccCccc
Confidence            4                                                  333222111   1  45555666655554


Q ss_pred             ccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHH
Q 037514          400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTN  479 (636)
Q Consensus       400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  479 (636)
                      +.     ...++|+.|++++|.+....+. +  .++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+.
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            32     2334566666666666533222 1  24677777777777664  3466777777777777777766665554


Q ss_pred             hhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCC
Q 037514          480 AFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS  559 (636)
Q Consensus       480 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  559 (636)
                      .     +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++..   +..++
T Consensus       276 ~-----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~  345 (597)
T 3oja_B          276 K-----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH  345 (597)
T ss_dssp             T-----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             C-----ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence            2     3566777777777774 4556667788888888888887 56777778888888888888887653   56678


Q ss_pred             CCCEEECcCCcceeecChhhhcCCC
Q 037514          560 EPYMLDLYGNSWEGVITEKHFRNLS  584 (636)
Q Consensus       560 ~L~~L~L~~n~l~~~~~~~~~~~l~  584 (636)
                      +|+.|++++|++.+......+..+.
T Consensus       346 ~L~~L~l~~N~~~~~~~~~~~~~~~  370 (597)
T 3oja_B          346 TLKNLTLSHNDWDCNSLRALFRNVA  370 (597)
T ss_dssp             CCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred             CCCEEEeeCCCCCChhHHHHHHHHh
Confidence            8888888888887765555444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.5e-32  Score=273.47  Aligned_cols=285  Identities=21%  Similarity=0.316  Sum_probs=182.6

Q ss_pred             ccCHHhHHHHHhcc-CCCCCCCCCCCCCcccC--c--ccc---C----CCCCCEEeCCCCCCCC--CCCccccCCCCCCE
Q 037514           41 RCTEREREALLKFK-GLIDPSARLSSWKSPIP--E--FVY---S----LKKLKLLDLSESSFSG--MLPPNIGNLSNLQY  106 (636)
Q Consensus        41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~~p--~--~~~---~----l~~L~~L~Ls~~~i~~--~~~~~l~~l~~L~~  106 (636)
                      .|.++|+.|+++|| ++.++. .+.+|...-+  .  |-+   .    ..+|++|+|++|.+++  .+|..|+++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            69999999999999 886655 6778853211  1  111   1    1578899999999988  78888999999999


Q ss_pred             EeCcC-CCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCC
Q 037514          107 LDLSY-QNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT  185 (636)
Q Consensus       107 L~Ls~-n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  185 (636)
                      |++++ |.+.+..+..         +.++++|++|++++|.+++.  ++..+.++++|++|++++|.+.+..|..+.+++
T Consensus        81 L~L~~~n~l~~~~p~~---------l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPA---------IAKLTQLHYLYITHTNVSGA--IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             EEEEEETTEESCCCGG---------GGGCTTCSEEEEEEECCEEE--CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             eeCCCCCcccccCChh---------HhcCCCCCEEECcCCeeCCc--CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            99984 7776533221         66667777777777776643  224566666677777777666666666666666


Q ss_pred             CCCEEEccCCcCCcCCCccccCCC-CCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCccc
Q 037514          186 SLSILELSYDNFNSQIPQWLFNIS-TLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNST  264 (636)
Q Consensus       186 ~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~  264 (636)
                      +|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|. .+..++ |++|++++|.+.+..+.            
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~------------  215 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASV------------  215 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGG------------
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCH------------
Confidence            666666666666665666666665 666666666666655443 244444 66666666655543332            


Q ss_pred             chhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEcc
Q 037514          265 LETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN  344 (636)
Q Consensus       265 L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~  344 (636)
                                     .+..+++|+.|++++|++.+.++.  +..+++|++                          |+++
T Consensus       216 ---------------~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~--------------------------L~Ls  252 (313)
T 1ogq_A          216 ---------------LFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNG--------------------------LDLR  252 (313)
T ss_dssp             ---------------GCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCE--------------------------EECC
T ss_pred             ---------------HHhcCCCCCEEECCCCceeeecCc--ccccCCCCE--------------------------EECc
Confidence                           233344566666666665543332  444444444                          4444


Q ss_pred             CCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514          345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK  397 (636)
Q Consensus       345 ~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~  397 (636)
                      +|.+.+.+|..+..+++|++|++++|++++.+|.. ..+  ++|+.+++++|.
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l--~~L~~l~l~~N~  302 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL--QRFDVSAYANNK  302 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG--GGSCGGGTCSSS
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc--cccChHHhcCCC
Confidence            55566666666777777777777777777666654 333  667777777775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.5e-34  Score=302.92  Aligned_cols=391  Identities=19%  Similarity=0.141  Sum_probs=230.4

Q ss_pred             CCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCC----CCCcCccCCCCCCEEEccCCcCCcCCCcccc-CCC
Q 037514          135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNF----PQSLPFLNFTSLSILELSYDNFNSQIPQWLF-NIS  209 (636)
Q Consensus       135 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~-~l~  209 (636)
                      ++|++|++++|+++..+ +...+..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus         3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            45677777777776553 33346667777777777777653    2234455666777777777666553333332 233


Q ss_pred             ----CCCEEeCcCCcCCC----CCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccc
Q 037514          210 ----TLVTLNLRSSQLSG----SIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENI  281 (636)
Q Consensus       210 ----~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l  281 (636)
                          +|++|++++|++..    .++. .+..+++|++|++++|.+.+..+..+...-                      .
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------------~  138 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGL----------------------L  138 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHH----------------------T
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHH----------------------h
Confidence                46666666665542    1111 144555555555555554433222211100                      0


Q ss_pred             cCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCC
Q 037514          282 GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQAS  361 (636)
Q Consensus       282 ~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  361 (636)
                      ...++|++|++++|++++....                                               .++..+..+++
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~-----------------------------------------------~l~~~l~~~~~  171 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCE-----------------------------------------------PLASVLRAKPD  171 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHH-----------------------------------------------HHHHHHHHCTT
T ss_pred             cCCCcceEEECCCCCCCHHHHH-----------------------------------------------HHHHHHhhCCC
Confidence            1122444455544444432100                                               12333444455


Q ss_pred             cceeccccccCCCcchhhHHhhc---CCCccEEECccCcCCcc----CCcccCCCCCCcEEEccCCcCCccc-----CCC
Q 037514          362 VFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDLSNNKFFGG----ILSSLCSLPSLYWLRLGGNNLSGEL-----STS  429 (636)
Q Consensus       362 L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~  429 (636)
                      |++|++++|.+.+..+..+....   .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..     +..
T Consensus       172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~  251 (461)
T 1z7x_W          172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL  251 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence            55555555555444333332210   04666777777666543    3444556677777777777665321     222


Q ss_pred             CCCCCCCCEEECCCCCCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC---
Q 037514          430 LPDCSRLTALDIGGNRFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN---  502 (636)
Q Consensus       430 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---  502 (636)
                      +..+++|++|++++|.++..    .+..+..+++|++|++++|++.+..+..+........++|++|++++|.+++.   
T Consensus       252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence            33567888888888887764    34456668888888888888876555555544333345788888888888754   


Q ss_pred             -CchhhcCCCCCCEEeCcCCccCCccChhhhC-----CCCCCeEeCcCccccc----cccccccCCCCCCEEECcCCcce
Q 037514          503 -LPDSLGNLLCLEYLGLSENSFLGSLPTSIGN-----LSHLRALYLSFNVMSR----IISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       503 -~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                       ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++    .++..+..+++|++|++++|++.
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence             4566777888889999888887655554442     6788899999888886    56777888888999999988876


Q ss_pred             eecChhh---h-cCCCCCCeeeCCCCCC
Q 037514          573 GVITEKH---F-RNLSGLDYLTISSSNS  596 (636)
Q Consensus       573 ~~~~~~~---~-~~l~~L~~L~ls~n~~  596 (636)
                      +......   + ....+|+.|++.++..
T Consensus       412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          412 DAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHHHHhccCCcchhheeeccccc
Confidence            5322211   1 2345688888877744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.9e-32  Score=269.51  Aligned_cols=249  Identities=23%  Similarity=0.289  Sum_probs=229.6

Q ss_pred             CCccEEEccCCCCCc--CCChhhcCCCCcceecccc-ccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCC
Q 037514          336 FSLRQMAINDCQLGS--AFPSWLKTQASVFKLTLSN-AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSL  412 (636)
Q Consensus       336 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  412 (636)
                      .++++|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+  ++|++|++++|.+++..|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC--TTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC--CCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            468888888889988  8899999999999999995 99999999999888  999999999999998999999999999


Q ss_pred             cEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccE
Q 037514          413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLET  491 (636)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~  491 (636)
                      ++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++.+|..+..+     + |++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----~-L~~  201 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----N-LAF  201 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----C-CSE
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----c-ccE
Confidence            9999999999988999999999999999999999987788898988 99999999999998888776643     2 799


Q ss_pred             EEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcc
Q 037514          492 LDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW  571 (636)
Q Consensus       492 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  571 (636)
                      |++++|++++..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            99999999989999999999999999999999977776 88899999999999999999999999999999999999999


Q ss_pred             eeecChhhhcCCCCCCeeeCCCCC
Q 037514          572 EGVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       572 ~~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      ++.+|+.  ..+++|+.+++++|+
T Consensus       281 ~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          281 CGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCCS--TTGGGSCGGGTCSSS
T ss_pred             cccCCCC--ccccccChHHhcCCC
Confidence            9999985  788999999999994

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.5e-34  Score=302.92  Aligned_cols=393  Identities=19%  Similarity=0.169  Sum_probs=227.9

Q ss_pred             CCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCC--CChhhhhCCCCCCCEEEccCCcCCCCCC
Q 037514          101 LSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKV--TNWLQVVNELPSLVELHLSNCQLNFPQS  178 (636)
Q Consensus       101 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~  178 (636)
                      .++|++||+++|++++.....        .+..+++|++|++++|.++..  ..++..+..+++|++|++++|.+....+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~--------~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~   73 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAE--------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   73 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHH--------HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CccceehhhhhcccCchhHHH--------HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence            357899999999988754321        156789999999999998854  2345678889999999999999865333


Q ss_pred             cCc-cCCC----CCCEEEccCCcCCc----CCCccccCCCCCCEEeCcCCcCCCCCCC----CCCCCCCCCCEEEccccc
Q 037514          179 LPF-LNFT----SLSILELSYDNFNS----QIPQWLFNISTLVTLNLRSSQLSGSIPK----FPPGKMCNLRRLDLAING  245 (636)
Q Consensus       179 ~~~-~~l~----~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~L~~n~  245 (636)
                      ..+ ..++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+.    ......++|++|++++|.
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence            222 3344    79999999999984    4588899999999999999998742111    003346789999999999


Q ss_pred             CccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc-----CCCCCCEEEccCC
Q 037514          246 FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ-----NLTKLNSLYLSSS  320 (636)
Q Consensus       246 ~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~-----~l~~L~~L~L~~n  320 (636)
                      +++.....                       ++..+..+++|++|++++|.+.+.... .+.     ..++|++|++++|
T Consensus       154 l~~~~~~~-----------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          154 LSAASCEP-----------------------LASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             CBGGGHHH-----------------------HHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTS
T ss_pred             CCHHHHHH-----------------------HHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCC
Confidence            88644322                       223445567899999999988753222 222     2445555555554


Q ss_pred             CCccEEecCCCCCCCCCccEEEccCCCCCcC----CChhhcCCCCcceeccccccCCCcchhhHHhhc---CCCccEEEC
Q 037514          321 NKSLVFTMRSDWIPPFSLRQMAINDCQLGSA----FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDL  393 (636)
Q Consensus       321 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~l  393 (636)
                                                .+++.    ++..+..+++|++|++++|.+.+.....+....   .++|++|++
T Consensus       210 --------------------------~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          210 --------------------------GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             --------------------------CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             --------------------------CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence                                      44332    355566667777777777766554322222100   045555555


Q ss_pred             ccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc-----CCCCCCeEeCcCC
Q 037514          394 SNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG-----NLCNLHSLDISYN  468 (636)
Q Consensus       394 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n  468 (636)
                      ++|.+++....                    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|
T Consensus       264 ~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          264 WECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             TTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            55555432100                    0223333344444444444444332221111     1235555555555


Q ss_pred             cCCCchhhhHH-hhhcCCCCcccEEEcccCcCCCCCchhhcC-----CCCCCEEeCcCCccCC----ccChhhhCCCCCC
Q 037514          469 HITGEIKELTN-AFSACNVSTLETLDLASNKLGGNLPDSLGN-----LLCLEYLGLSENSFLG----SLPTSIGNLSHLR  538 (636)
Q Consensus       469 ~l~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~  538 (636)
                      .+++.....+. .+..  +++|++|++++|++++..+..+..     .++|++|++++|.+.+    .+|..+..+++|+
T Consensus       324 ~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQ--NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             CCBGGGHHHHHHHHHH--CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCchHHHHHHHHHHhh--CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            55433221111 1111  144455555555554332222221     4566666666666554    4555566666666


Q ss_pred             eEeCcCccccccccccc-----cCCCCCCEEECcCCccee
Q 037514          539 ALYLSFNVMSRIISENI-----GQLSEPYMLDLYGNSWEG  573 (636)
Q Consensus       539 ~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~  573 (636)
                      +|++++|++++.....+     .....|+.|++.++.+..
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            66666666654321111     123456666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.5e-29  Score=250.41  Aligned_cols=245  Identities=22%  Similarity=0.250  Sum_probs=125.8

Q ss_pred             CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEe
Q 037514          136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLN  215 (636)
Q Consensus       136 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  215 (636)
                      ++++++++++.++.+|.   .+  .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~---~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK---DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCCC---SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccccCc---cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            34444444444444432   11  24566666666666665555666666666666666666665566666666666666


Q ss_pred             CcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCC
Q 037514          216 LRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN  295 (636)
Q Consensus       216 L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n  295 (636)
                      +++|+++ .+|..   -.++|++|++++|.+.+..+..                           +..+++|++|++++|
T Consensus       107 Ls~n~l~-~l~~~---~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          107 LSKNQLK-ELPEK---MPKTLQELRVHENEITKVRKSV---------------------------FNGLNQMIVVELGTN  155 (330)
T ss_dssp             CCSSCCS-BCCSS---CCTTCCEEECCSSCCCBBCHHH---------------------------HTTCTTCCEEECCSS
T ss_pred             CCCCcCC-ccChh---hcccccEEECCCCcccccCHhH---------------------------hcCCccccEEECCCC
Confidence            6666665 43321   2256666666666655433322                           333446666666666


Q ss_pred             cCcc-ccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCC
Q 037514          296 SWKG-IITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISD  374 (636)
Q Consensus       296 ~~~~-~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~  374 (636)
                      .+.. .+....+..+++|++|++++|.+..   ++..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       156 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          156 PLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CCCGGGBCTTGGGGCTTCCEEECCSSCCCS---CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             cCCccCcChhhccCCCCcCEEECCCCcccc---CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            6642 1222356666666666666663211   111111  344455555555554444555555555555555555544


Q ss_pred             cchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc
Q 037514          375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG  424 (636)
Q Consensus       375 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  424 (636)
                      ..+.++..+  ++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus       231 ~~~~~~~~l--~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          231 VDNGSLANT--PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             ECTTTGGGS--TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             eChhhccCC--CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            444444443  44444444444443 233334444444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.6e-29  Score=254.20  Aligned_cols=289  Identities=17%  Similarity=0.180  Sum_probs=212.8

Q ss_pred             CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514          286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL  365 (636)
Q Consensus       286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  365 (636)
                      +++.++++++.+.. +|. .+  .++++.|++++|  .+....+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        32 ~l~~l~~~~~~l~~-lp~-~~--~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPK-DL--PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCS-CCC-SC--CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccc-cCc-cC--CCCCeEEECCCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            56677777776664 443 12  256777777777  3344444456666777777777777777777788888888888


Q ss_pred             ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc--ccCCCCCCCCCCCEEECCC
Q 037514          366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG--ELSTSLPDCSRLTALDIGG  443 (636)
Q Consensus       366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~  443 (636)
                      ++++|.++......+     ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++
T Consensus       106 ~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          106 YLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             ECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ECCCCcCCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            888888774433222     578888888888877777778888888888888888753  5567778888888888888


Q ss_pred             CCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514          444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF  523 (636)
Q Consensus       444 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~  523 (636)
                      |.++.++...   .++|++|++++|++++..+..+..     +++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       181 n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          181 TNITTIPQGL---PPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             SCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CccccCCccc---cccCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            8888765432   278888888888888766655542     36678888888888877777788888889999998888


Q ss_pred             CCccChhhhCCCCCCeEeCcCccccccccccccC------CCCCCEEECcCCccee-ecChhhhcCCCCCCeeeCCCC
Q 037514          524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ------LSEPYMLDLYGNSWEG-VITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      . .+|..+..+++|++|++++|++++..+..|..      .+.++.+++++|++.. .++...|..+.+++.+++++|
T Consensus       253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            7 67778888888899999988888877766643      3778889999998752 355567888888999998887

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.6e-29  Score=255.85  Aligned_cols=289  Identities=17%  Similarity=0.192  Sum_probs=237.0

Q ss_pred             CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCccee
Q 037514          286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL  365 (636)
Q Consensus       286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  365 (636)
                      +++.++++++.+.. +|.. +  .++++.|++++|  ......+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        34 ~l~~l~~~~~~l~~-ip~~-~--~~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKE-I--SPDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSC-C--CTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCccc-cCCC-C--CCCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            68889999988875 6652 2  368899999998  5555666678888899999999999988888899999999999


Q ss_pred             ccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCc--ccCCCCCCCCCCCEEECCC
Q 037514          366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSG--ELSTSLPDCSRLTALDIGG  443 (636)
Q Consensus       366 ~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~  443 (636)
                      ++++|.+....+..+     ++|++|++++|++.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++
T Consensus       108 ~L~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             ECCSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             ECCCCcCCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            999999885444332     689999999999988777788999999999999999863  567777777 999999999


Q ss_pred             CCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCcc
Q 037514          444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSF  523 (636)
Q Consensus       444 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~  523 (636)
                      |.+++++.. +  .++|++|++++|++++..+..+..     +++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       182 n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          182 AKLTGIPKD-L--PETLNELHLDHNKIQAIELEDLLR-----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             SBCSSCCSS-S--CSSCSCCBCCSSCCCCCCTTSSTT-----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCccCcc-c--cCCCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            999886653 2  278999999999998776665543     36779999999999987777899999999999999999


Q ss_pred             CCccChhhhCCCCCCeEeCcCccccccccccccC------CCCCCEEECcCCccee-ecChhhhcCCCCCCeeeCCCCC
Q 037514          524 LGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ------LSEPYMLDLYGNSWEG-VITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       524 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      . .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|++.. .++...|..+++|+.+++++|.
T Consensus       254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8 78888999999999999999999887777765      3678999999998762 3566779999999999999883

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.8e-29  Score=251.30  Aligned_cols=290  Identities=18%  Similarity=0.201  Sum_probs=158.0

Q ss_pred             CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCcc
Q 037514          103 NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFL  182 (636)
Q Consensus       103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  182 (636)
                      +++.++++++.++.++..          +  .++|++|++++|.++.++.  ..|.++++|++|++++|.+++..+..|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~----------~--~~~l~~L~l~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~   99 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE----------I--SPDTTLLDLQNNDISELRK--DDFKGLQHLYALVLVNNKISKIHEKAFS   99 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC----------C--CTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECGGGST
T ss_pred             cCCEEECCCCCccccCCC----------C--CCCCeEEECCCCcCCccCH--hHhhCCCCCcEEECCCCccCccCHhHhh
Confidence            467777777766655432          2  2455666666665555421  3455555555555555555555555555


Q ss_pred             CCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCc
Q 037514          183 NFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNN  262 (636)
Q Consensus       183 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~  262 (636)
                      ++++|++|++++|.++. +|..+.  ++|++|++++|++. .+|...+.++++|++|++++|.+...             
T Consensus       100 ~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~-------------  162 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS-------------  162 (332)
T ss_dssp             TCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGG-------------
T ss_pred             CcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccC-------------
Confidence            55555555555555553 333332  45555555555554 33322244555555555555544310             


Q ss_pred             ccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEE
Q 037514          263 STLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMA  342 (636)
Q Consensus       263 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~  342 (636)
                                  +..+..+..+ +|++|++++|++++ +|.                           .+.  .+|++|+
T Consensus       163 ------------~~~~~~~~~l-~L~~L~l~~n~l~~-l~~---------------------------~~~--~~L~~L~  199 (332)
T 2ft3_A          163 ------------GFEPGAFDGL-KLNYLRISEAKLTG-IPK---------------------------DLP--ETLNELH  199 (332)
T ss_dssp             ------------GSCTTSSCSC-CCSCCBCCSSBCSS-CCS---------------------------SSC--SSCSCCB
T ss_pred             ------------CCCcccccCC-ccCEEECcCCCCCc-cCc---------------------------ccc--CCCCEEE
Confidence                        0111222222 44445555544443 222                           111  3455555


Q ss_pred             ccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcC
Q 037514          343 INDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNL  422 (636)
Q Consensus       343 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  422 (636)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+.++..+  ++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC--TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC--CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            55556665556666777777777777777776666666665  67777777777765 4455566667777777777776


Q ss_pred             CcccCCCCCC------CCCCCEEECCCCCCC--CCcchhhcCCCCCCeEeCcCCc
Q 037514          423 SGELSTSLPD------CSRLTALDIGGNRFL--QLPSTSMGNLCNLHSLDISYNH  469 (636)
Q Consensus       423 ~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~  469 (636)
                      ++..+..+..      .+.|+.|++++|++.  +..+..+..+++|+.+++++|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6554444443      245666666666665  4555556666666666666553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.3e-31  Score=288.51  Aligned_cols=409  Identities=13%  Similarity=0.084  Sum_probs=191.6

Q ss_pred             CccccCCCCCCEEeCCCCCC---CCCCCcccc------------CCCCCCEEeCcCCCCCcccccccccccccccCCC-C
Q 037514           71 PEFVYSLKKLKLLDLSESSF---SGMLPPNIG------------NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPD-L  134 (636)
Q Consensus        71 p~~~~~l~~L~~L~Ls~~~i---~~~~~~~l~------------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~-l  134 (636)
                      +..+.++++|++|+++++..   .+.+|..++            ++++|++|+|++|.+++....         ++.. +
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~---------~l~~~~  136 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD---------RLAKAR  136 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH---------HHHHHH
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH---------HHHHhc
Confidence            34455777888888877532   123333333            567777777777766543221         1222 2


Q ss_pred             C-CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCC----CCcCccCCCCCCEEEccCCcCCc----CCCccc
Q 037514          135 S-SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP----QSLPFLNFTSLSILELSYDNFNS----QIPQWL  205 (636)
Q Consensus       135 ~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~p~~l  205 (636)
                      + +|++|++++|.......+.....++++|++|+|++|.+.+.    ++..+..+++|++|++++|.+++    .++..+
T Consensus       137 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            2 37777777665211111223334566777777777765443    12233455666666666666652    233334


Q ss_pred             cCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCC
Q 037514          206 FNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLA  285 (636)
Q Consensus       206 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~  285 (636)
                      .++++|++|++++|.+.+ +|. .+..+++|++|+++........                        +..+..+..++
T Consensus       217 ~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~l~~~~  270 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGM------------------------PEKYMNLVFPR  270 (592)
T ss_dssp             HHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTC------------------------TTSSSCCCCCT
T ss_pred             hhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccch------------------------HHHHHHhhccc
Confidence            456666666666665553 221 1455566666666542111000                        01222334445


Q ss_pred             CCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCC-ChhhcCCCCcce
Q 037514          286 ELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAF-PSWLKTQASVFK  364 (636)
Q Consensus       286 ~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~  364 (636)
                      +|+.++++++.... ++. .+..+++|++|++++|                          .+.+.. ...+..+++|++
T Consensus       271 ~L~~L~l~~~~~~~-l~~-~~~~~~~L~~L~Ls~~--------------------------~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          271 KLCRLGLSYMGPNE-MPI-LFPFAAQIRKLDLLYA--------------------------LLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TCCEEEETTCCTTT-GGG-GGGGGGGCCEEEETTC--------------------------CCCHHHHHHHHTTCTTCCE
T ss_pred             cccccCccccchhH-HHH-HHhhcCCCcEEecCCC--------------------------cCCHHHHHHHHHhCcCCCE
Confidence            56666555532221 222 3444445555555444                          332221 133456666666


Q ss_pred             eccccccCCCc-chhhHHhhcCCCccEEECcc-----------CcCCccC-CcccCCCCCCcEEEccCCcCCcccCCCCC
Q 037514          365 LTLSNAAISDT-IPDWFWGVISQKLSVIDLSN-----------NKFFGGI-LSSLCSLPSLYWLRLGGNNLSGELSTSLP  431 (636)
Q Consensus       365 L~L~~n~~~~~-~~~~~~~~~~~~L~~L~ls~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  431 (636)
                      |+++ +.+.+. ++.....+  ++|++|++++           +.+++.. ......+++|++|++..+.+++..+..+.
T Consensus       323 L~L~-~~~~~~~l~~~~~~~--~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          323 LETR-NVIGDRGLEVLAQYC--KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             EEEE-GGGHHHHHHHHHHHC--TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             Eecc-CccCHHHHHHHHHhC--CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            6666 333222 22223333  5666666662           3333221 11122355566666655555443333333


Q ss_pred             C-CCCCCEEECC----CCCCCCC-----cchhhcCCCCCCeEeCcCCc--CCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514          432 D-CSRLTALDIG----GNRFLQL-----PSTSMGNLCNLHSLDISYNH--ITGEIKELTNAFSACNVSTLETLDLASNKL  499 (636)
Q Consensus       432 ~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  499 (636)
                      . +++|++|+++    .|.+++.     .+..+..+++|++|++++|.  +++.....+..    .+++|++|++++|++
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----~~~~L~~L~L~~n~l  475 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----YSPNVRWMLLGYVGE  475 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----SCTTCCEEEECSCCS
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----hCccceEeeccCCCC
Confidence            2 4555555553    3344432     11223445555555554332  33222222211    124455555555554


Q ss_pred             CCC-CchhhcCCCCCCEEeCcCCccCCc-cChhhhCCCCCCeEeCcCccccc
Q 037514          500 GGN-LPDSLGNLLCLEYLGLSENSFLGS-LPTSIGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       500 ~~~-~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~  549 (636)
                      ++. ++..+.++++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            431 223334455555555555554322 22223344555555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=249.70  Aligned_cols=237  Identities=23%  Similarity=0.274  Sum_probs=168.4

Q ss_pred             CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514          360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL  439 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  439 (636)
                      ++++.|++++|++.+..+..|..+  ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSC--SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCC--CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            456666677766666666666665  667777777777766666667777777777777777765555567777777777


Q ss_pred             ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeC
Q 037514          440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL  518 (636)
Q Consensus       440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  518 (636)
                      ++++|.+..+++..|..+++|++|++++|+..+.++. .+.     .+++|++|++++|+++ .+| .+..+++|+.|+|
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L  214 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL  214 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-----cccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence            7777777776666677777777777777443333332 222     2366677777777777 444 3677788888888


Q ss_pred             cCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514          519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      ++|++.+..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|+++ .+|...|..+++|+.|++++|  +.
T Consensus       215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N--p~  291 (440)
T 3zyj_A          215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN--PW  291 (440)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSS--CE
T ss_pred             CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCC--Cc
Confidence            888888777778888888888888888888877778888888888888888887 466667778888888888888  45


Q ss_pred             cccccccccc
Q 037514          599 VFNIRHDWIA  608 (636)
Q Consensus       599 ~~~~~~~~~~  608 (636)
                      .|+|...|+.
T Consensus       292 ~CdC~l~~l~  301 (440)
T 3zyj_A          292 NCNCDILWLS  301 (440)
T ss_dssp             ECSSTTHHHH
T ss_pred             cCCCCchHHH
Confidence            5666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.2e-27  Score=249.48  Aligned_cols=254  Identities=24%  Similarity=0.240  Sum_probs=189.0

Q ss_pred             EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514          340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG  419 (636)
Q Consensus       340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  419 (636)
                      .++.++..+. .+|..+.  +++++|++++|.+.+..+..|..+  ++|++|++++|.+++..+..|..+++|++|++++
T Consensus        58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHL--HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCC--CCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3444444443 2343332  567777777777777777777766  7788888888888777777778888888888888


Q ss_pred             CcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCc
Q 037514          420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNK  498 (636)
Q Consensus       420 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~  498 (636)
                      |++++..+..+..+++|++|++++|.++.+++..+..+++|++|++++|+..+.++. .+.     .+++|++|++++|+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCN  207 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCTTCCEEECTTSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-----CCCCCCEEECCCCc
Confidence            888766666677788888888888888877777788888888888887544333332 222     23677888888888


Q ss_pred             CCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChh
Q 037514          499 LGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       499 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  578 (636)
                      +++ +| .+..+++|+.|+|++|.+.+..|..|.++++|++|++++|++++..+..|..+++|+.|++++|+++ .+|..
T Consensus       208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~  284 (452)
T 3zyi_A          208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD  284 (452)
T ss_dssp             CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred             ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChH
Confidence            874 34 4777888888888888888877888888888888888888888888888888888888888888887 46777


Q ss_pred             hhcCCCCCCeeeCCCCCCCccccccccccc
Q 037514          579 HFRNLSGLDYLTISSSNSSLVFNIRHDWIA  608 (636)
Q Consensus       579 ~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~  608 (636)
                      .|..+++|+.|++++|  +..|+|...|+.
T Consensus       285 ~~~~l~~L~~L~L~~N--p~~CdC~~~~l~  312 (452)
T 3zyi_A          285 LFTPLRYLVELHLHHN--PWNCDCDILWLA  312 (452)
T ss_dssp             SSTTCTTCCEEECCSS--CEECSTTTHHHH
T ss_pred             HhccccCCCEEEccCC--CcCCCCCchHHH
Confidence            7888888888888888  555666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.8e-27  Score=247.21  Aligned_cols=235  Identities=24%  Similarity=0.286  Sum_probs=188.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.+++++...         |.++++|++|++++|.++
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA---------FNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG---------GTTCSSCCEEECCSSCCS
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh---------ccCCccCCEEECCCCcCC
Confidence            4666554  58999999999999888899999999999999999999877543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD-NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      .++.  ..|..+++|++|+|++|.+....+..|.++++|++|++++| .+....+..|.++++|++|++++|.++ .+|.
T Consensus       126 ~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  202 (440)
T 3zyj_A          126 TIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN  202 (440)
T ss_dssp             SCCT--TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC
T ss_pred             eeCH--hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc
Confidence            8854  57899999999999999999888889999999999999995 555545557899999999999999998 6664


Q ss_pred             CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514          228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ  307 (636)
Q Consensus       228 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~  307 (636)
                        +..+++|++|++++|.+++..+..+..                           +++|+.|++++|++.+..+ ..|.
T Consensus       203 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------l~~L~~L~L~~n~l~~~~~-~~~~  252 (440)
T 3zyj_A          203 --LTPLIKLDELDLSGNHLSAIRPGSFQG---------------------------LMHLQKLWMIQSQIQVIER-NAFD  252 (440)
T ss_dssp             --CTTCSSCCEEECTTSCCCEECTTTTTT---------------------------CTTCCEEECTTCCCCEECT-TSST
T ss_pred             --cCCCcccCEEECCCCccCccChhhhcc---------------------------CccCCEEECCCCceeEECh-hhhc
Confidence              788999999999999998766655544                           4466777777776666333 3666


Q ss_pred             CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC
Q 037514          308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG  349 (636)
Q Consensus       308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  349 (636)
                      .+++|+.|++++|  .+.......+..+++|+.|++++|.+.
T Consensus       253 ~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          253 NLQSLVEINLAHN--NLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCTTCCEEECTTS--CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCC--CCCccChhHhccccCCCEEEcCCCCcc
Confidence            6777777777766  333334444556667777777776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=240.59  Aligned_cols=279  Identities=16%  Similarity=0.185  Sum_probs=173.4

Q ss_pred             CCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcc
Q 037514          284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVF  363 (636)
Q Consensus       284 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  363 (636)
                      ++.....+.+++.++. +|.. +  .++|++|++++|  .........+..+++|++|++++|.+.+..+..+.++++|+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~-~--~~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSG-L--TEAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTT-C--CTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCeEeeCCCCCccc-cccc-c--cccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            3444557777777775 5552 2  247777787777  44444444566677777777777777776677777788888


Q ss_pred             eeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCC-cccCCCCCCcEEEccCCc-CCcccCCCCCCCCCCCEEEC
Q 037514          364 KLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL-SSLCSLPSLYWLRLGGNN-LSGELSTSLPDCSRLTALDI  441 (636)
Q Consensus       364 ~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  441 (636)
                      +|++++|++++..+.++..+  ++|++|++++|++++... ..+..+++|++|++++|+ +.+..+..+.++++|++|++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPL--SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTC--TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCC--ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            88888888877666666666  778888888887765444 467777888888888773 55555667777778888888


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc---CCCCCCEEeC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG---NLLCLEYLGL  518 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L  518 (636)
                      ++|.+++..+..+..+++|++|++++|++.......+..     +++|++|++++|.+++..+..+.   ....++.+++
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-----TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-----TTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-----cccccEEECCCCccccccccccccccccchhhcccc
Confidence            888777776767777777777777777775333222221     25667777777777654433222   2344455555


Q ss_pred             cCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          519 SENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       519 s~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      +++.+.+.                   .+. .+|..+..+++|++|++++|+++ .+|...|..+++|++|++++|++
T Consensus       257 ~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          257 RNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             ESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence            55444321                   000 13344445555555555555554 34554445555555555555533

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7.5e-30  Score=279.97  Aligned_cols=434  Identities=15%  Similarity=0.088  Sum_probs=261.6

Q ss_pred             CCCCCCCCEEecCCccCCC----CC---------ChhhhhCCCCCCCEEEccCCcCCCCCCcCccC-CC-CCCEEEccCC
Q 037514          131 LPDLSSSRYLHLEGMKLSK----VT---------NWLQVVNELPSLVELHLSNCQLNFPQSLPFLN-FT-SLSILELSYD  195 (636)
Q Consensus       131 ~~~l~~L~~L~L~~n~l~~----~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n  195 (636)
                      +..+++|++|+++++....    .+         .+......+++|++|+|++|.++...+..+.. ++ +|++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            4567789999997753211    01         01112236888899999888776544444444 33 4888888887


Q ss_pred             c-CCc-CCCccccCCCCCCEEeCcCCcCCCCCCC-C--CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhcc
Q 037514          196 N-FNS-QIPQWLFNISTLVTLNLRSSQLSGSIPK-F--PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLET  270 (636)
Q Consensus       196 ~-~~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~  270 (636)
                      . ++. .++....++++|++|++++|.+.+.-.. +  .+..+++|++|++++|.+.+.....                 
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~-----------------  211 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD-----------------  211 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH-----------------
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH-----------------
Confidence            6 221 1222334788888888888877643110 0  1346788888888888876432222                 


Q ss_pred             CcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCcc-EEecCCCCCCCCCccEEEccCCCCC
Q 037514          271 QRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSL-VFTMRSDWIPPFSLRQMAINDCQLG  349 (636)
Q Consensus       271 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~  349 (636)
                            ++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++...... .......+..+.+|+.+.+.++. .
T Consensus       212 ------l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~  282 (592)
T 3ogk_B          212 ------LETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P  282 (592)
T ss_dssp             ------HHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T
T ss_pred             ------HHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h
Confidence                  22334567799999999998887 554 78899999999998542111 12233455666788888887753 3


Q ss_pred             cCCChhhcCCCCcceeccccccCCCcchhh-HHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC---------
Q 037514          350 SAFPSWLKTQASVFKLTLSNAAISDTIPDW-FWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG---------  419 (636)
Q Consensus       350 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~---------  419 (636)
                      ..+|..+..+++|++|++++|.+++..... +..+  ++|++|+++++...+.++.....+++|++|++++         
T Consensus       283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~--~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~  360 (592)
T 3ogk_B          283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC--PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED  360 (592)
T ss_dssp             TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC--TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred             hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC--cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence            356667777788888888888765544322 3344  7788888873322222333334567788888873         


Q ss_pred             --CcCCcc-cCCCCCCCCCCCEEECCCCCCCCCcchhhcC-CCCCCeEeCc----CCcCCCchhh-hHH-hhhcCCCCcc
Q 037514          420 --NNLSGE-LSTSLPDCSRLTALDIGGNRFLQLPSTSMGN-LCNLHSLDIS----YNHITGEIKE-LTN-AFSACNVSTL  489 (636)
Q Consensus       420 --n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~-~~~-~~~~~~~~~L  489 (636)
                        +.+++. ++.....+++|++|+++.+.+++.....+.. +++|++|+++    .|.+++.+.+ .+. .+..  +++|
T Consensus       361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~--~~~L  438 (592)
T 3ogk_B          361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG--CKKL  438 (592)
T ss_dssp             TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH--CTTC
T ss_pred             ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh--CCCC
Confidence              344322 1122334677777777777776655444544 7777777775    5556543111 011 1111  3667


Q ss_pred             cEEEcccCc--CCCCCchhhc-CCCCCCEEeCcCCccCC-ccChhhhCCCCCCeEeCcCcccccc-ccccccCCCCCCEE
Q 037514          490 ETLDLASNK--LGGNLPDSLG-NLLCLEYLGLSENSFLG-SLPTSIGNLSHLRALYLSFNVMSRI-ISENIGQLSEPYML  564 (636)
Q Consensus       490 ~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  564 (636)
                      ++|++++|.  +++..+..+. .+++|+.|++++|++++ .++..+.++++|++|++++|.+++. ++.....+++|++|
T Consensus       439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence            777776443  5544343333 46777777777777664 3344456677777777777776544 33334567777777


Q ss_pred             ECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          565 DLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       565 ~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      ++++|++++.........++.+....+..+
T Consensus       519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          519 WVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            777777665433333445566655555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.6e-27  Score=231.81  Aligned_cols=231  Identities=19%  Similarity=0.193  Sum_probs=178.9

Q ss_pred             ceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC
Q 037514          363 FKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG  442 (636)
Q Consensus       363 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (636)
                      +.++.+++.+... |..+  .  +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~i-p~~~--~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI--P--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC--C--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcccC-CcCC--C--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3445555555433 2221  1  578888888888877766778888888888888888887777788888888888888


Q ss_pred             CCC-CCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          443 GNR-FLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       443 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      +|. +....+..+..+++|++|++++|++++..+..+..     +++|++|++++|++++..+..+..+++|++|++++|
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-----CcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence            886 77777777888888888888888887766655442     367788888888888666677888899999999999


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN  601 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~  601 (636)
                      ++.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+ ++...+..+++|++|++++|++  .|+
T Consensus       164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~--~c~  240 (285)
T 1ozn_A          164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW--VCD  240 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE--ECS
T ss_pred             cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCc--cCC
Confidence            8886666678888999999999999988888888889999999999998885 6766788899999999999954  444


Q ss_pred             ccccc
Q 037514          602 IRHDW  606 (636)
Q Consensus       602 ~~~~~  606 (636)
                      +...|
T Consensus       241 ~~~~~  245 (285)
T 1ozn_A          241 CRARP  245 (285)
T ss_dssp             GGGHH
T ss_pred             CCcHH
Confidence            44433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.5e-27  Score=247.12  Aligned_cols=235  Identities=20%  Similarity=0.230  Sum_probs=189.3

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.++++++..         |.++++|++|++++|.++
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA---------FNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---------TTTCTTCCEEECCSSCCS
T ss_pred             ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh---------ccCcccCCEEECCCCcCC
Confidence            4565544  59999999999999999999999999999999999999877543         899999999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD-NFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      .++.  ..|..+++|++|+|++|++....+..|.++++|++|++++| .+....+..|.++++|++|++++|+++ .+|.
T Consensus       137 ~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  213 (452)
T 3zyi_A          137 VIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN  213 (452)
T ss_dssp             BCCT--TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred             ccCh--hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence            8854  57899999999999999999888889999999999999995 555544557889999999999999998 4553


Q ss_pred             CCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhc
Q 037514          228 FPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQ  307 (636)
Q Consensus       228 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~  307 (636)
                        +..+++|++|++++|.+.+..+..+..                           +++|+.|++++|++.+..+ ..|.
T Consensus       214 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------l~~L~~L~L~~n~l~~~~~-~~~~  263 (452)
T 3zyi_A          214 --LTPLVGLEELEMSGNHFPEIRPGSFHG---------------------------LSSLKKLWVMNSQVSLIER-NAFD  263 (452)
T ss_dssp             --CTTCTTCCEEECTTSCCSEECGGGGTT---------------------------CTTCCEEECTTSCCCEECT-TTTT
T ss_pred             --ccccccccEEECcCCcCcccCcccccC---------------------------ccCCCEEEeCCCcCceECH-HHhc
Confidence              788999999999999998766655544                           4567777777777766433 3677


Q ss_pred             CCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC
Q 037514          308 NLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG  349 (636)
Q Consensus       308 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  349 (636)
                      .+++|+.|++++|  .+.......+..+++|++|++++|.+.
T Consensus       264 ~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          264 GLASLVELNLAHN--NLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSS--CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCC--cCCccChHHhccccCCCEEEccCCCcC
Confidence            7777777777777  333334444556667777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=241.23  Aligned_cols=257  Identities=18%  Similarity=0.187  Sum_probs=201.7

Q ss_pred             CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514          285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK  364 (636)
Q Consensus       285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  364 (636)
                      ++|++|++++|++++ ++...|.++++|++|++++|  ......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        52 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            489999999999987 55558999999999999999  566666777889999999999999999776677999999999


Q ss_pred             eccccccCCCcch-hhHHhhcCCCccEEECccC-cCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC
Q 037514          365 LTLSNAAISDTIP-DWFWGVISQKLSVIDLSNN-KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG  442 (636)
Q Consensus       365 L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (636)
                      |++++|++.+..+ ..+..+  ++|++|++++| .+.+..+..+..+++|++|++++|++.+..|..+..+++|++|+++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHL--TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTC--TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EECCCCCCcccCchhhhccC--CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            9999999997655 466666  89999999999 4766667889999999999999999998889999999999999999


Q ss_pred             CCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC----CCchhhcCCCCCCEEeC
Q 037514          443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG----NLPDSLGNLLCLEYLGL  518 (636)
Q Consensus       443 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L  518 (636)
                      +|.+...+...+..+++|++|++++|++++..+..+.....  .+.++.++++++.+.+    .+|..+..+++|+.|++
T Consensus       207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~--~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET--NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C--CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCccccchhhhhhhcccccEEECCCCccccccccccccccc--cchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence            99998877766777999999999999998766555443332  3667888888887764    24455555666666666


Q ss_pred             cCCccCCccChh-hhCCCCCCeEeCcCccccc
Q 037514          519 SENSFLGSLPTS-IGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       519 s~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~  549 (636)
                      ++|++. .+|.. |..+++|++|++++|++.+
T Consensus       285 s~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            666655 33333 3555555555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1e-27  Score=239.86  Aligned_cols=228  Identities=22%  Similarity=0.237  Sum_probs=122.6

Q ss_pred             CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCc--chhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCc
Q 037514          336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDT--IPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY  413 (636)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  413 (636)
                      .++++|++++|.+....+..+..+++|++|++++|.+...  .+..+...  ++|++|++++|.+.. ++..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~-l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--TSLKYLDLSFNGVIT-MSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC--SCCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc--cccCEEECCCCcccc-ChhhcCCCCCCC
Confidence            3566666666666544444455666666666666655532  23444444  556666666555542 333355555555


Q ss_pred             EEEccCCcCCcccC-CCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514          414 WLRLGGNNLSGELS-TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL  492 (636)
Q Consensus       414 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  492 (636)
                      +|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.                   
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------  165 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------------------  165 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-------------------
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-------------------
Confidence            55555555543332 3455555555555555555544444444555555555555544320                   


Q ss_pred             EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                               ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       166 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          166 ---------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             ---------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             ---------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence                     24445555556666666666655555555555666666666666665555555556666666666666665


Q ss_pred             eecChhhhcCC-CCCCeeeCCCCC
Q 037514          573 GVITEKHFRNL-SGLDYLTISSSN  595 (636)
Q Consensus       573 ~~~~~~~~~~l-~~L~~L~ls~n~  595 (636)
                      +..|.. +..+ ++|++|++++|+
T Consensus       237 ~~~~~~-~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          237 TSKKQE-LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             BCSSSS-CCCCCTTCCEEECTTCC
T ss_pred             ccCHHH-HHhhhccCCEEEccCCC
Confidence            444432 4444 366666666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.9e-27  Score=236.51  Aligned_cols=211  Identities=19%  Similarity=0.204  Sum_probs=161.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+.  +++++|++++|.++...+..|+++++|++|++++|.++.....   +..    +..+++|++|++++|.+.
T Consensus        21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~----~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQS----DFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHH----HHSCSCCCEEECCSCSEE
T ss_pred             cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccc----cccccccCEEECCCCccc
Confidence            3555443  5899999999999865555689999999999999998765310   001    557889999999999888


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCC-CCC
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSG-SIP  226 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p  226 (636)
                      .++   ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|
T Consensus        92 ~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           92 TMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEE---EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cCh---hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            764   367888999999999998877655 578888999999999998888788888888999999999998875 234


Q ss_pred             CCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhh
Q 037514          227 KFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF  306 (636)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~  306 (636)
                      . .+..+++|++|++++|.+++..+.                           .+..+++|++|++++|++++. +...+
T Consensus       169 ~-~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~~-~~~~~  219 (306)
T 2z66_A          169 D-IFTELRNLTFLDLSQCQLEQLSPT---------------------------AFNSLSSLQVLNMSHNNFFSL-DTFPY  219 (306)
T ss_dssp             S-CCTTCTTCCEEECTTSCCCEECTT---------------------------TTTTCTTCCEEECTTSCCSBC-CSGGG
T ss_pred             h-HHhhCcCCCEEECCCCCcCCcCHH---------------------------HhcCCCCCCEEECCCCccCcc-Chhhc
Confidence            2 477888888888888887754443                           344456888888888888773 33367


Q ss_pred             cCCCCCCEEEccCC
Q 037514          307 QNLTKLNSLYLSSS  320 (636)
Q Consensus       307 ~~l~~L~~L~L~~n  320 (636)
                      ..+++|+.|++++|
T Consensus       220 ~~l~~L~~L~L~~N  233 (306)
T 2z66_A          220 KCLNSLQVLDYSLN  233 (306)
T ss_dssp             TTCTTCCEEECTTS
T ss_pred             cCcccCCEeECCCC
Confidence            77777777777776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.4e-26  Score=227.27  Aligned_cols=228  Identities=21%  Similarity=0.224  Sum_probs=156.6

Q ss_pred             EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514          340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG  419 (636)
Q Consensus       340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  419 (636)
                      +++.+++.+.. +|..+  .+++++|++++|.+.+..+..+..+  ++|++|++++|.+++..+..+..+++|++|++++
T Consensus        15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccC--CCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            44444444442 23322  3466777777777766666666555  6777777777777666666777777777777777


Q ss_pred             Cc-CCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCc
Q 037514          420 NN-LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK  498 (636)
Q Consensus       420 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  498 (636)
                      |. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..     +++|++|++++|+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~  164 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----LGNLTHLFLHGNR  164 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----CCCccEEECCCCc
Confidence            76 55555666777777777777777777776666777777777777777776555443332     3566777777777


Q ss_pred             CCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          499 LGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       499 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      +++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+.
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            7755555677777788888888877777777777777888888888877777667777778888888888877655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.3e-26  Score=230.39  Aligned_cols=229  Identities=21%  Similarity=0.245  Sum_probs=121.2

Q ss_pred             ccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEc
Q 037514          338 LRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRL  417 (636)
Q Consensus       338 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  417 (636)
                      ++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+  ++|++|++++|.++ .+|..+..+++|++|++
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l--~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF--AGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG--TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc--CCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            333333333444 34444555566666666666655 445555554  56666666666665 44555666666666666


Q ss_pred             cCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccC
Q 037514          418 GGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN  497 (636)
Q Consensus       418 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n  497 (636)
                      ++|++.+.+|..+..      ..         ....+..+++|++|++++|+++ .+|..+..     +++|++|++++|
T Consensus       158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-----l~~L~~L~L~~N  216 (328)
T 4fcg_A          158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-----LQNLKSLKIRNS  216 (328)
T ss_dssp             EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGG-----CTTCCEEEEESS
T ss_pred             CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcC-----CCCCCEEEccCC
Confidence            666555555544432      00         0011223555555555555554 33332221     244455555555


Q ss_pred             cCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          498 KLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       498 ~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      +++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+
T Consensus       217 ~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            555 2344455555566666666555555555555555666666665555555555555556666666666555555555


Q ss_pred             hhhcCCCCCCeeeCCCC
Q 037514          578 KHFRNLSGLDYLTISSS  594 (636)
Q Consensus       578 ~~~~~l~~L~~L~ls~n  594 (636)
                      . +..+++|+.+++..+
T Consensus       296 ~-l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          296 L-IAQLPANCIILVPPH  311 (328)
T ss_dssp             G-GGGSCTTCEEECCGG
T ss_pred             H-HhhccCceEEeCCHH
Confidence            4 555555666555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.1e-26  Score=231.74  Aligned_cols=208  Identities=20%  Similarity=0.197  Sum_probs=179.4

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ++++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEEC
Confidence            67888888888886 55666777889999999999888 7788888889999999999988854 556888899999999


Q ss_pred             cCCcCCCchhhhHHh------hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514          466 SYNHITGEIKELTNA------FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA  539 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  539 (636)
                      ++|++.+.+|..+..      +.  .+++|++|++++|+++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEE--ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             CCCCCccccChhHhhccchhhhc--cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            998887777765432      11  1488899999999999 888899999999999999999994 6778999999999


Q ss_pred             EeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccc
Q 037514          540 LYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFN  601 (636)
Q Consensus       540 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~  601 (636)
                      |++++|.+.+.+|..+..+++|++|++++|++.+.+|.. +..+++|++|++++|+.....+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhcc
Confidence            999999999999999999999999999999999999986 8899999999999997654433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.4e-28  Score=270.04  Aligned_cols=432  Identities=15%  Similarity=0.078  Sum_probs=218.4

Q ss_pred             CCCCCCCCEEecCCccCCC-CC----C--------hhhhhCCCCCCCEEEccCCcCCCCCCcCcc-CCCCCCEEEccCC-
Q 037514          131 LPDLSSSRYLHLEGMKLSK-VT----N--------WLQVVNELPSLVELHLSNCQLNFPQSLPFL-NFTSLSILELSYD-  195 (636)
Q Consensus       131 ~~~l~~L~~L~L~~n~l~~-~~----~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-  195 (636)
                      +..+++|++|+++++.... ..    .        +......+++|++|++++|.++...+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            5567888999998875221 11    0        112234678888888888887655444454 5788888888888 


Q ss_pred             cCCcC-CCccccCCCCCCEEeCcCCcCCCCCCC-C--CCCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccC
Q 037514          196 NFNSQ-IPQWLFNISTLVTLNLRSSQLSGSIPK-F--PPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQ  271 (636)
Q Consensus       196 ~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~-~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~  271 (636)
                      .++.. ++..+.++++|++|++++|.+++..+. +  ....+++|++|++++|. .......+..               
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~---------------  205 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALER---------------  205 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHH---------------
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHH---------------
Confidence            44432 344445788888888888886643211 1  13467788888888776 1111111111               


Q ss_pred             cCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccE----EecCCCCCCCCCccEE-EccCC
Q 037514          272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLV----FTMRSDWIPPFSLRQM-AINDC  346 (636)
Q Consensus       272 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~~~L~~L-~l~~~  346 (636)
                              .+..+++|++|++++|...+.++. .+..+++|++|++..+.....    ......+..+++|+.+ .+.+.
T Consensus       206 --------l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~  276 (594)
T 2p1m_B          206 --------LVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA  276 (594)
T ss_dssp             --------HHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred             --------HHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence                    123467889999988833333444 677888899888776521000    0011123344555555 22221


Q ss_pred             CCCcCCChhhcCCCCcceeccccccCCCcchhh-HHhhcCCCccEEECccCcCCcc-CCcccCCCCCCcEEEccC-----
Q 037514          347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDW-FWGVISQKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGG-----  419 (636)
Q Consensus       347 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~-----  419 (636)
                      . .+.++..+..+++|++|++++|.+++..... +..+  ++|++|++++| +.+. .+.....+++|++|++.+     
T Consensus       277 ~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~--~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g  352 (594)
T 2p1m_B          277 V-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC--PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV  352 (594)
T ss_dssp             C-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC--TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred             c-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC--CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence            1 1223333445566666666666644332222 2222  56666666655 2211 111122355666666632     


Q ss_pred             ----CcCCcccCCCC-CCCCCCCEEECCCCCCCCCcchhhc-CCCCCCeEeCc--C----CcCCCchh-hhHHh-hhcCC
Q 037514          420 ----NNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSMG-NLCNLHSLDIS--Y----NHITGEIK-ELTNA-FSACN  485 (636)
Q Consensus       420 ----n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~-~~~~~-~~~~~  485 (636)
                          +.+++.....+ ..+++|++|+++.+.+++.....+. .+++|+.|+++  +    +.+++... ..+.. +..  
T Consensus       353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~--  430 (594)
T 2p1m_B          353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH--  430 (594)
T ss_dssp             SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH--
T ss_pred             cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh--
Confidence                22221111111 1245566665555555543333332 35566666665  2    33331111 01111 111  


Q ss_pred             CCcccEEEcccCcCCCCCchhhcC-CCCCCEEeCcCCccCCccChhh-hCCCCCCeEeCcCccccccccc-cccCCCCCC
Q 037514          486 VSTLETLDLASNKLGGNLPDSLGN-LLCLEYLGLSENSFLGSLPTSI-GNLSHLRALYLSFNVMSRIISE-NIGQLSEPY  562 (636)
Q Consensus       486 ~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~  562 (636)
                      +++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            24556666654 444333333333 5566666666665544333333 4456666666666665433222 233455666


Q ss_pred             EEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          563 MLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       563 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      +|++++|+++..........++.|+...+..+
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            66666665532222222234455544444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1e-26  Score=232.77  Aligned_cols=248  Identities=21%  Similarity=0.206  Sum_probs=195.7

Q ss_pred             CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCC-CcchhhHH-------hhcCCCccEEECccCcCCccCCccc-
Q 037514          336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS-DTIPDWFW-------GVISQKLSVIDLSNNKFFGGILSSL-  406 (636)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~~~-------~~~~~~L~~L~ls~n~l~~~~~~~~-  406 (636)
                      .+|+++++++|.+  .+|..+...  ++.|++++|.+. ...|..+.       .+  ++|++|++++|++++..|..+ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--SGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--SCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--CCccEEEccCCcccchhHHHHH
Confidence            3566666666677  566655544  889999999884 34555443       45  899999999999988888776 


Q ss_pred             -CCCCCCcEEEccCCcCCcccCCCCCCC-----CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514          407 -CSLPSLYWLRLGGNNLSGELSTSLPDC-----SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA  480 (636)
Q Consensus       407 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  480 (636)
                       ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+.++..++.+++|++|++++|++.+..+. ...
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-HHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-HHH
Confidence             8899999999999999876 7666665     8999999999999999888899999999999999998754321 112


Q ss_pred             hhcCCCCcccEEEcccCcCCCC--Cc-hhhcCCCCCCEEeCcCCccCCccC-hhhhCCCCCCeEeCcCcccccccccccc
Q 037514          481 FSACNVSTLETLDLASNKLGGN--LP-DSLGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISENIG  556 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~--~~-~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  556 (636)
                      .....+++|++|++++|++++.  ++ ..+..+++|++|++++|++.+..| ..+..+++|++|++++|+++. +|..+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc
Confidence            2112458889999999999832  22 345688999999999999998775 456678999999999999984 566555


Q ss_pred             CCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          557 QLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                        ++|++|++++|++++ +|.  +..+++|++|++++|+++
T Consensus       274 --~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             --SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTT
T ss_pred             --CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCC
Confidence              899999999999986 466  789999999999999654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.2e-28  Score=268.50  Aligned_cols=445  Identities=13%  Similarity=0.114  Sum_probs=296.9

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCc-ccccccccccc----cc-cCCCCCCCCEEecCCccCCCCCChh
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKE-YQITKELWVSD----LI-WLPDLSSSRYLHLEGMKLSKVTNWL  154 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~----~~-~~~~l~~L~~L~L~~n~l~~~~~~~  154 (636)
                      +.++++++... .....+.++++|++|+++++.... ......-+...    +. ....+++|++|++++|.++..  .+
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--~~  122 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD--CL  122 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH--HH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH--HH
Confidence            56777665432 223446788999999999875321 11000000000    00 024688999999999988765  23


Q ss_pred             hhhC-CCCCCCEEEccCCc-CCCC-CCcCccCCCCCCEEEccCCcCCcCCCcccc----CCCCCCEEeCcCCcCCCCCCC
Q 037514          155 QVVN-ELPSLVELHLSNCQ-LNFP-QSLPFLNFTSLSILELSYDNFNSQIPQWLF----NISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       155 ~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      ..+. .+++|++|++++|. +... .+..+.++++|++|++++|.+++..+.++.    .+++|++|++++|.  +.++.
T Consensus       123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~  200 (594)
T 2p1m_B          123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF  200 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH
T ss_pred             HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH
Confidence            3443 68999999999994 4321 233345789999999999998775555554    66799999999997  12221


Q ss_pred             CC----CCCCCCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCC-------c
Q 037514          228 FP----PGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRN-------S  296 (636)
Q Consensus       228 ~~----~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n-------~  296 (636)
                      ..    ..++++|++|++++|...+..+                           ..+..+++|++|++..+       .
T Consensus       201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~---------------------------~~~~~~~~L~~L~l~~~~~~~~~~~  253 (594)
T 2p1m_B          201 SALERLVTRCPNLKSLKLNRAVPLEKLA---------------------------TLLQRAPQLEELGTGGYTAEVRPDV  253 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCTTSCHHHHH---------------------------HHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred             HHHHHHHHhCCCCcEEecCCCCcHHHHH---------------------------HHHhcCCcceEcccccccCccchhh
Confidence            11    3457999999999883222222                           33445668888886554       3


Q ss_pred             CccccChhhhcCCCCCCEE-EccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCC-ChhhcCCCCcceeccccccCCC
Q 037514          297 WKGIITENHFQNLTKLNSL-YLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAF-PSWLKTQASVFKLTLSNAAISD  374 (636)
Q Consensus       297 ~~~~i~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~  374 (636)
                      +.+ ++. .+.++++|+.+ .+.+.   ....++.....+++|++|++++|.+.+.. ...+..+++|++|++++| +.+
T Consensus       254 ~~~-l~~-~l~~~~~L~~Ls~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          254 YSG-LSV-ALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             HHH-HHH-HHHTCTTCCEEECCBTC---CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred             HHH-HHH-HHhcCCCcccccCCccc---chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence            333 333 68899999999 44432   11222222335689999999999976533 334668999999999998 443


Q ss_pred             cchhhHH-hhcCCCccEEECcc---------CcCCccCCcccC-CCCCCcEEEccCCcCCcccCCCCC-CCCCCCEEECC
Q 037514          375 TIPDWFW-GVISQKLSVIDLSN---------NKFFGGILSSLC-SLPSLYWLRLGGNNLSGELSTSLP-DCSRLTALDIG  442 (636)
Q Consensus       375 ~~~~~~~-~~~~~~L~~L~ls~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~  442 (636)
                      .....+. .+  ++|++|++.+         +.+++.....+. .+++|++|.+..+.+++.....+. .+++|++|+++
T Consensus       328 ~~l~~l~~~~--~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          328 AGLEVLASTC--KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHHHC--TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhC--CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            3333333 34  8999999944         344433222232 478999999988888765444443 58899999999


Q ss_pred             --C----CCCCCCc-----chhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh-cCC
Q 037514          443 --G----NRFLQLP-----STSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL-GNL  510 (636)
Q Consensus       443 --~----n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~l  510 (636)
                        +    +.++..+     +..+..+++|++|++++ .+++.....+..    .+++|++|++++|.+++.....+ .++
T Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----YAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----HCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----hchhccEeeccCCCCcHHHHHHHHhcC
Confidence              4    5565332     22366789999999987 666554444433    13788999999999986555555 679


Q ss_pred             CCCCEEeCcCCccCCccCh-hhhCCCCCCeEeCcCccccccccccc-cCCCCCCEEECcCCc
Q 037514          511 LCLEYLGLSENSFLGSLPT-SIGNLSHLRALYLSFNVMSRIISENI-GQLSEPYMLDLYGNS  570 (636)
Q Consensus       511 ~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~  570 (636)
                      ++|++|+|++|.+++.... .+..+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus       481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            9999999999998654443 34568999999999999865444444 567887776666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=233.45  Aligned_cols=228  Identities=19%  Similarity=0.154  Sum_probs=145.2

Q ss_pred             CCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCccc
Q 037514          347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL  426 (636)
Q Consensus       347 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  426 (636)
                      .+.+..|..+..+++|++|++++|.+.+..+  +..+  ++|++|++++|.+++..     ..++|++|++++|++++..
T Consensus        45 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l--~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~  115 (317)
T 3o53_A           45 PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS  115 (317)
T ss_dssp             CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC--TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE
T ss_pred             ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc--CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcC
Confidence            4444444555566666666666666654443  3444  56666666666664332     2366777777777766544


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchh
Q 037514          427 STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDS  506 (636)
Q Consensus       427 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  506 (636)
                      +..   +++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..    .+++|++|++++|.+++. +. 
T Consensus       116 ~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~-~~-  186 (317)
T 3o53_A          116 CSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQYNFIYDV-KG-  186 (317)
T ss_dssp             ECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECTTSCCCEE-EC-
T ss_pred             ccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh----ccCcCCEEECCCCcCccc-cc-
Confidence            332   456777777777777766666667777777777777776655443321    125667777777777643 22 


Q ss_pred             hcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCC
Q 037514          507 LGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGL  586 (636)
Q Consensus       507 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  586 (636)
                      ...+++|++|++++|++.+ +|..+..+++|++|++++|+++. +|..+..+++|+.|++++|++.+......+..+++|
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            2347778888888887774 44447777788888888887775 456677777888888888877733333456777777


Q ss_pred             CeeeCCCC
Q 037514          587 DYLTISSS  594 (636)
Q Consensus       587 ~~L~ls~n  594 (636)
                      +.++++++
T Consensus       265 ~~l~l~~~  272 (317)
T 3o53_A          265 QTVAKQTV  272 (317)
T ss_dssp             HHHHHHHH
T ss_pred             eEEECCCc
Confidence            77777744

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.8e-27  Score=235.18  Aligned_cols=252  Identities=21%  Similarity=0.174  Sum_probs=181.0

Q ss_pred             ccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCC-cCCChhhc--
Q 037514          281 IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG-SAFPSWLK--  357 (636)
Q Consensus       281 l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~--  357 (636)
                      ++..++|+.+++++|.+  .+|......   |+.|++++|                          .+. ..++..+.  
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n--------------------------~l~~~~~~~~~~~~   87 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRL--------------------------TVRAARIPSRILFG   87 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEE--------------------------EEEEEECBHHHHHH
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---Hhhcccccc--------------------------cccCCCcCHHHHHH
Confidence            45556788888888887  466532222   666666666                          221 12333332  


Q ss_pred             -----CCCCcceeccccccCCCcchhhH--HhhcCCCccEEECccCcCCccCCcccCCC-----CCCcEEEccCCcCCcc
Q 037514          358 -----TQASVFKLTLSNAAISDTIPDWF--WGVISQKLSVIDLSNNKFFGGILSSLCSL-----PSLYWLRLGGNNLSGE  425 (636)
Q Consensus       358 -----~~~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~  425 (636)
                           ++++|++|++++|.+++..|..+  ...  ++|++|++++|++++. |..+..+     ++|++|++++|++.+.
T Consensus        88 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATG--PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             HHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS--CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             HHHhcCcCCccEEEccCCcccchhHHHHHHhcC--CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence                 56667777777777766666554  344  6777777777777665 5555554     7888899998888877


Q ss_pred             cCCCCCCCCCCCEEECCCCCCCCCc--chhh--cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC
Q 037514          426 LSTSLPDCSRLTALDIGGNRFLQLP--STSM--GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG  501 (636)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  501 (636)
                      .+..+..+++|++|++++|++.+..  +..+  ..+++|++|++++|++++........+.  .+++|++|++++|++++
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--ARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--TTCCCSEEECTTSCCCS
T ss_pred             hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--cCCCCCEEECCCCcCCc
Confidence            7788888899999999999877641  2233  7889999999999998743221111122  23788999999999997


Q ss_pred             CCc-hhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514          502 NLP-DSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG  573 (636)
Q Consensus       502 ~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  573 (636)
                      ..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            664 45677899999999999998 7777666  8999999999999987 55 8899999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1e-23  Score=228.13  Aligned_cols=270  Identities=20%  Similarity=0.220  Sum_probs=177.7

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      .++++|++++|+++ .+|..+.  ++|++|++++|.++.++.             .+++|++|++++|.++.++.     
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-------------~l~~L~~L~Ls~N~l~~lp~-----   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-------------LPPELRTLEVSGNQLTSLPV-----   98 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-------------CCTTCCEEEECSCCCSCCCC-----
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-------------cCCCCCEEEcCCCcCCcCCC-----
Confidence            36899999999998 6777665  899999999999887542             45778888888888876642     


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                       .+++|++|++++|.+++...    .+++|++|++++|.+++ +|..   +++|++|++++|+++ .+|.    .+++|+
T Consensus        99 -~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~  164 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELC  164 (622)
T ss_dssp             -CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCC
T ss_pred             -CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCC
Confidence             56778888888887766433    45677777777777766 4543   366777777777666 3332    235566


Q ss_pred             EEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEc
Q 037514          238 RLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL  317 (636)
Q Consensus       238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L  317 (636)
                      .|++++|.+++.                            |   ..+++|+.|++++|++++ ++.    ..++|+.|++
T Consensus       165 ~L~L~~N~l~~l----------------------------~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L  208 (622)
T 3g06_A          165 KLWAYNNQLTSL----------------------------P---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWA  208 (622)
T ss_dssp             EEECCSSCCSCC----------------------------C---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEEC
T ss_pred             EEECCCCCCCCC----------------------------c---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEEC
Confidence            666666655421                            1   112355556665555554 222    1233333333


Q ss_pred             cCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCc
Q 037514          318 SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNK  397 (636)
Q Consensus       318 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~  397 (636)
                      ++                                                  |.++... ..   .  ++|++|++++|.
T Consensus       209 ~~--------------------------------------------------N~l~~l~-~~---~--~~L~~L~Ls~N~  232 (622)
T 3g06_A          209 YN--------------------------------------------------NRLTSLP-AL---P--SGLKELIVSGNR  232 (622)
T ss_dssp             CS--------------------------------------------------SCCSSCC-CC---C--TTCCEEECCSSC
T ss_pred             cC--------------------------------------------------CcccccC-CC---C--CCCCEEEccCCc
Confidence            33                                                  3333211 11   1  567777777777


Q ss_pred             CCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhh
Q 037514          398 FFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKEL  477 (636)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  477 (636)
                      +++ +|   ..+++|++|++++|+++ .+|.   .+++|++|++++|.++.++ ..+..+++|+.|++++|++++..+..
T Consensus       233 L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          233 LTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             cCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcCHHH
Confidence            765 33   34578888888888887 4454   5678888888888888654 46888889999999999988888777


Q ss_pred             HHhhhc
Q 037514          478 TNAFSA  483 (636)
Q Consensus       478 ~~~~~~  483 (636)
                      +..+..
T Consensus       304 l~~L~~  309 (622)
T 3g06_A          304 LREITS  309 (622)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.6e-23  Score=225.09  Aligned_cols=269  Identities=23%  Similarity=0.226  Sum_probs=179.8

Q ss_pred             CCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514          102 SNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF  181 (636)
Q Consensus       102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  181 (636)
                      .++++|++++|.++.++..          +.  ++|++|++++|.++.++.      .+++|++|+|++|+++....   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~----------l~--~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDC----------LP--AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSC----------CC--TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChh----------hC--CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC---
Confidence            3588888888888876542          33  677888888887776643      45677777777777664332   


Q ss_pred             cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCC
Q 037514          182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCN  261 (636)
Q Consensus       182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~  261 (636)
                       .+++|++|++++|.+++ +|.   .+++|++|++++|+++ .+|.    .+++|++|++++|.+++...          
T Consensus        99 -~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----------  158 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA----------  158 (622)
T ss_dssp             -CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----------
T ss_pred             -CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC----------
Confidence             55677777777777666 343   4566667777776666 3332    23556666666555442100          


Q ss_pred             cccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEE
Q 037514          262 NSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQM  341 (636)
Q Consensus       262 ~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L  341 (636)
                                           ...+|+.|++++|++++ ++                                       
T Consensus       159 ---------------------~~~~L~~L~L~~N~l~~-l~---------------------------------------  177 (622)
T 3g06_A          159 ---------------------LPSELCKLWAYNNQLTS-LP---------------------------------------  177 (622)
T ss_dssp             ---------------------CCTTCCEEECCSSCCSC-CC---------------------------------------
T ss_pred             ---------------------ccCCCCEEECCCCCCCC-Cc---------------------------------------
Confidence                                 01244455555554443 22                                       


Q ss_pred             EccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCc
Q 037514          342 AINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN  421 (636)
Q Consensus       342 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  421 (636)
                                     ..+++|+.|++++|.+++..+ .   .  ++|+.|++++|.++.. |.   .+++|++|++++|+
T Consensus       178 ---------------~~~~~L~~L~Ls~N~l~~l~~-~---~--~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~  232 (622)
T 3g06_A          178 ---------------MLPSGLQELSVSDNQLASLPT-L---P--SELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNR  232 (622)
T ss_dssp             ---------------CCCTTCCEEECCSSCCSCCCC-C---C--TTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSC
T ss_pred             ---------------ccCCCCcEEECCCCCCCCCCC-c---c--chhhEEECcCCccccc-CC---CCCCCCEEEccCCc
Confidence                           122344455555555443221 1   1  6899999999999753 32   35899999999999


Q ss_pred             CCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCC
Q 037514          422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGG  501 (636)
Q Consensus       422 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  501 (636)
                      +++ +|   ..+++|++|++++|.++.++.    .+++|+.|++++|+++ .+|..+..     +++|+.|++++|++++
T Consensus       233 L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~-----l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          233 LTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIH-----LSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGG-----SCTTCEEECCSCCCCH
T ss_pred             cCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhh-----ccccCEEEecCCCCCC
Confidence            985 55   456899999999999997765    6789999999999998 55655543     3788999999999998


Q ss_pred             CCchhhcCCC
Q 037514          502 NLPDSLGNLL  511 (636)
Q Consensus       502 ~~~~~l~~l~  511 (636)
                      ..|..+..++
T Consensus       299 ~~~~~l~~L~  308 (622)
T 3g06_A          299 RTLQALREIT  308 (622)
T ss_dssp             HHHHHHHHHH
T ss_pred             cCHHHHHhcc
Confidence            8888776554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.7e-25  Score=224.45  Aligned_cols=239  Identities=21%  Similarity=0.174  Sum_probs=201.3

Q ss_pred             CccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEE
Q 037514          337 SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLR  416 (636)
Q Consensus       337 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  416 (636)
                      .++..+++++.+.......+..+++|++|++++|.+.+..|..+..+  ++|++|++++|.+++..+  +..+++|++|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence            45556666666655555666777899999999999999999999888  999999999999987654  88999999999


Q ss_pred             ccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEccc
Q 037514          417 LGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS  496 (636)
Q Consensus       417 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~  496 (636)
                      +++|++++..     ..++|++|++++|.+++..+.   .+++|++|++++|++++..+..+..     +++|++|++++
T Consensus        87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~Ls~  153 (317)
T 3o53_A           87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKL  153 (317)
T ss_dssp             CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG-----GSSEEEEECTT
T ss_pred             CcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc-----cCCCCEEECCC
Confidence            9999987433     348999999999999987664   4688999999999999776655543     37789999999


Q ss_pred             CcCCCCCchhh-cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeec
Q 037514          497 NKLGGNLPDSL-GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI  575 (636)
Q Consensus       497 n~l~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  575 (636)
                      |.+++..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|++++..+. +..+++|+.|++++|++. .+
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l  229 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LI  229 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EE
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-ch
Confidence            99997777766 4789999999999999855 33 34589999999999999986554 889999999999999998 47


Q ss_pred             ChhhhcCCCCCCeeeCCCCCCC
Q 037514          576 TEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       576 ~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                      |.. +..+++|+.|++++|++.
T Consensus       230 ~~~-~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          230 EKA-LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTT-CCCCTTCCEEECTTCCCB
T ss_pred             hhH-hhcCCCCCEEEccCCCcc
Confidence            775 788999999999999665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2e-23  Score=204.28  Aligned_cols=204  Identities=24%  Similarity=0.283  Sum_probs=147.1

Q ss_pred             CccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514          387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS  466 (636)
Q Consensus       387 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  466 (636)
                      ..+++++++++++. +|..+.  +++++|++++|++.+..+..|.++++|++|++++|.++.+++..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45667777766654 333332  567777777777765555567777777777777777777766666777777777777


Q ss_pred             CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514          467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV  546 (636)
Q Consensus       467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  546 (636)
                      +|++++..+..+.     .+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus        94 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           94 DNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             SSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            7777655544333     23566788888887776666777888888888888888876666667888888888888888


Q ss_pred             ccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcc
Q 037514          547 MSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV  599 (636)
Q Consensus       547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~  599 (636)
                      +++..+..|..+++|++|++++|++. .+|...|..+++|+.|++++|+....
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence            88877777888888888888888887 46666677888888888888854433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-23  Score=207.09  Aligned_cols=208  Identities=23%  Similarity=0.215  Sum_probs=169.9

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      +++++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            56888888888887776667888888888888888888666677888888888888888888887777888888888888


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC-CchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCC----eE
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR----AL  540 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~----~L  540 (636)
                      ++|++.+..+..+.     .+++|++|++++|++++. +|..+..+++|++|++++|++.+..+..+..+++|+    .|
T Consensus       108 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          108 VETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             TTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             CCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            88888765543333     347779999999998863 588899999999999999999877777787777777    89


Q ss_pred             eCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      ++++|++++..+..+.. .+|+.|++++|+++ .+|...|..+++|++|++++|++...|
T Consensus       183 ~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          183 DLSLNPMNFIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             ECCSSCCCEECTTSSCS-CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ecCCCcccccCccccCC-CcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence            99999999877666554 48999999999998 477777899999999999999665444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1e-24  Score=231.51  Aligned_cols=237  Identities=19%  Similarity=0.167  Sum_probs=177.0

Q ss_pred             CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEE
Q 037514          336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWL  415 (636)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  415 (636)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+++..|  +..+  ++|++|++++|.+++..+     .++|++|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l--~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--STLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC--TTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC--CCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            356666666667777777778888888888888888877665  5555  788888888888765432     3788888


Q ss_pred             EccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcc
Q 037514          416 RLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLA  495 (636)
Q Consensus       416 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls  495 (636)
                      ++++|.+.+..+.   .+++|++|++++|.+++..+..++.+++|++|++++|.+++.+|..+..    .+++|+.|+|+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----~l~~L~~L~Ls  177 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQ  177 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECT
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----hCCcccEEecC
Confidence            8888888765554   3467888888888888887777888888888888888888766655431    13677888888


Q ss_pred             cCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeec
Q 037514          496 SNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVI  575 (636)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  575 (636)
                      +|.+++. +. ...+++|+.|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+..
T Consensus       178 ~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          178 YNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            8888854 22 34578888888888888854 4448888888888888888886 5666888888888888888887333


Q ss_pred             ChhhhcCCCCCCeeeCC
Q 037514          576 TEKHFRNLSGLDYLTIS  592 (636)
Q Consensus       576 ~~~~~~~l~~L~~L~ls  592 (636)
                      +...+..++.|+.++++
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            33446777777777775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.4e-24  Score=227.50  Aligned_cols=217  Identities=21%  Similarity=0.156  Sum_probs=189.3

Q ss_pred             CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCE
Q 037514          359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTA  438 (636)
Q Consensus       359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  438 (636)
                      +++|++|++++|.+.+..|..+..+  ++|++|++++|.+++..+  +..+++|++|++++|.+++..+     .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            3489999999999999999999888  999999999999987665  8899999999999999985432     389999


Q ss_pred             EECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhc-CCCCCCEEe
Q 037514          439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLG-NLLCLEYLG  517 (636)
Q Consensus       439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~  517 (636)
                      |++++|.+++.++.   .+++|+.|++++|.+++..|..+..     +++|+.|++++|.+++..|..+. .+++|+.|+
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-----GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-----CCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            99999999988764   4688999999999999887766654     37789999999999988888876 799999999


Q ss_pred             CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                      |++|.+.+..+  +..+++|++|++++|.+++.+|. +..+++|+.|++++|.+++ +|.. +..+++|+.|++++|++.
T Consensus       176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCBC
T ss_pred             cCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchh-hccCCCCCEEEcCCCCCc
Confidence            99999986533  34689999999999999986655 8899999999999999995 7775 788999999999999654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.7e-23  Score=204.30  Aligned_cols=209  Identities=24%  Similarity=0.222  Sum_probs=156.3

Q ss_pred             CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514          360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL  439 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  439 (636)
                      +++++|++++|.+++..+..+..+  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTC--TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccc--cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            457777777777776666666665  777777777777776666677777888888888888776666777788888888


Q ss_pred             ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCc-hhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC----
Q 037514          440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE----  514 (636)
Q Consensus       440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----  514 (636)
                      ++++|.+.+..+..+..+++|++|++++|++++. +|..+..     +++|++|++++|++++..+..+..+++|+    
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----CCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            8888888777766677788888888888887653 3554443     25668888888888866666666666665    


Q ss_pred             EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514          515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT  576 (636)
Q Consensus       515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  576 (636)
                      .|++++|.+.+..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       181 ~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            888888888865555444 4478999999999888877778889999999999998887554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1e-22  Score=199.21  Aligned_cols=206  Identities=21%  Similarity=0.259  Sum_probs=172.8

Q ss_pred             CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEE
Q 037514          361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD  440 (636)
Q Consensus       361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  440 (636)
                      ..+.++++++.++.. |..+.    +++++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCCcc-CCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            356677777777643 32221    5788999999998877777888999999999999999866666678899999999


Q ss_pred             CCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514          441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE  520 (636)
Q Consensus       441 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (636)
                      +++|.+++.++..+..+++|++|++++|++++..+..+.     .+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-----SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-----cCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            999999998888888999999999999999877666544     347789999999999976667789999999999999


Q ss_pred             CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecC
Q 037514          521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVIT  576 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  576 (636)
                      |.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++....+
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            99998777789999999999999999999888889999999999999999876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.2e-22  Score=200.52  Aligned_cols=198  Identities=22%  Similarity=0.186  Sum_probs=115.8

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ++++++++++++++.. |..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            3444555555444322 22221  3555555555555544445555555555555555555554332  45555666666


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      ++|+++ .+|..+.     .+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|+.|++++|
T Consensus        85 s~N~l~-~l~~~~~-----~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CSSCCS-SCCCCTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCcCC-cCchhhc-----cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            666555 2222221     2355566666666666555566677777777777777776655556666777777777777


Q ss_pred             cccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      +++...+..|..+++|+.|++++|++. .+|...+ ...+|+.+++++|+.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCc
Confidence            777666666667777777777777776 4666533 445777777777744

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=6.2e-24  Score=217.32  Aligned_cols=255  Identities=18%  Similarity=0.155  Sum_probs=159.6

Q ss_pred             EEccCCCCCcCCChhhcCCCCcceeccccccCCCcch----hhHHhhcCC-CccEEECccCcCCccCCcccCCC-----C
Q 037514          341 MAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIP----DWFWGVISQ-KLSVIDLSNNKFFGGILSSLCSL-----P  410 (636)
Q Consensus       341 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~l-----~  410 (636)
                      .+++.+.+++.+|..+...++|++|++++|.+.+..+    ..+...  + +|++|++++|.+++..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC--CTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC--CCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4556666666666666666667777777777776665    445444  5 67777777777766655555443     7


Q ss_pred             CCcEEEccCCcCCcccCCC----CCCC-CCCCEEECCCCCCCCCcchhhc----C-CCCCCeEeCcCCcCCCchhhhHHh
Q 037514          411 SLYWLRLGGNNLSGELSTS----LPDC-SRLTALDIGGNRFLQLPSTSMG----N-LCNLHSLDISYNHITGEIKELTNA  480 (636)
Q Consensus       411 ~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~~~~~~  480 (636)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|++++.....+..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            7777777777776544332    3333 6777777777777766554432    3 357777777777777544444332


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchh----hcCC-CCCCEEeCcCCccCCc----cChhhhC-CCCCCeEeCcCcccccc
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDS----LGNL-LCLEYLGLSENSFLGS----LPTSIGN-LSHLRALYLSFNVMSRI  550 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~~~~~----~p~~l~~-l~~L~~L~Ls~n~l~~~  550 (636)
                      .-....++|++|++++|++++..+..    +..+ ++|+.|+|++|.+.+.    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            21111136777777777777555543    3344 4777888887777652    3444544 34777888887777765


Q ss_pred             cc----ccccCCCCCCEEECcCCcceeecCh-------hhhcCCCCCCeeeCCCCCCCc
Q 037514          551 IS----ENIGQLSEPYMLDLYGNSWEGVITE-------KHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       551 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      .+    ..+..+++|++|++++|.+.+ +..       ..+..+++|++||+++|++..
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~-i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKN-MSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTT-CCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccc-cCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            43    334566777788887777442 222       135566777777888776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.2e-22  Score=198.88  Aligned_cols=135  Identities=31%  Similarity=0.384  Sum_probs=68.8

Q ss_pred             hCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNL  236 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  236 (636)
                      +..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++ .+|...+.++++|
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  159 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL  159 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccC
Confidence            444455555555555554444444455555555555555555444444455555555555555554 2222224455555


Q ss_pred             CEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEE
Q 037514          237 RRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLY  316 (636)
Q Consensus       237 ~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~  316 (636)
                      ++|++++|.+++..+.                           .++.+++|++|++++|++.+ ++...+..+++|+.|+
T Consensus       160 ~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEG---------------------------VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             CEEECCSSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred             CEEECCCCCcCccCHH---------------------------HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEE
Confidence            5555555554432221                           12334456666666666665 3333566666666666


Q ss_pred             ccCC
Q 037514          317 LSSS  320 (636)
Q Consensus       317 L~~n  320 (636)
                      +++|
T Consensus       212 l~~N  215 (272)
T 3rfs_A          212 LHDN  215 (272)
T ss_dssp             CCSS
T ss_pred             ccCC
Confidence            6666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=9.2e-24  Score=218.28  Aligned_cols=246  Identities=21%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             CCChhhcCCCCcceeccccccCCCcchhhHH----hhcCCCccEEECccCcC---CccCCccc-------CCCCCCcEEE
Q 037514          351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFW----GVISQKLSVIDLSNNKF---FGGILSSL-------CSLPSLYWLR  416 (636)
Q Consensus       351 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~----~~~~~~L~~L~ls~n~l---~~~~~~~~-------~~l~~L~~L~  416 (636)
                      .++..+..+++|++|++++|.+.+..+..+.    ..  ++|++|++++|.+   .+.+|..+       ..+++|++|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC--TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC--CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            3556667777788888888877766554433    34  6788888887533   33444333       6778888888


Q ss_pred             ccCCcCCc----ccCCCCCCCCCCCEEECCCCCCCCCcchhhc----CC---------CCCCeEeCcCCcCC-CchhhhH
Q 037514          417 LGGNNLSG----ELSTSLPDCSRLTALDIGGNRFLQLPSTSMG----NL---------CNLHSLDISYNHIT-GEIKELT  478 (636)
Q Consensus       417 L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~~~  478 (636)
                      +++|.+.+    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|+++ +.++...
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            88888875    3556677788888888888888654333333    33         78888888888887 3444333


Q ss_pred             HhhhcCCCCcccEEEcccCcCCC-----CCchhhcCCCCCCEEeCcCCccC----CccChhhhCCCCCCeEeCcCccccc
Q 037514          479 NAFSACNVSTLETLDLASNKLGG-----NLPDSLGNLLCLEYLGLSENSFL----GSLPTSIGNLSHLRALYLSFNVMSR  549 (636)
Q Consensus       479 ~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~~~----~~~p~~l~~l~~L~~L~Ls~n~l~~  549 (636)
                      ..+..+  ++|++|++++|+++.     ..+..+..+++|+.|+|++|.+.    +.+|..+..+++|++|++++|.+++
T Consensus       181 ~~l~~~--~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          181 KTFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHC--TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHhC--CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            334433  677888888888872     23336778888888888888885    5677788888888888888888877


Q ss_pred             c----ccccccC--CCCCCEEECcCCccee----ecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          550 I----ISENIGQ--LSEPYMLDLYGNSWEG----VITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       550 ~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      .    ++..+..  +++|++|++++|++.+    .+|...+.++++|++|++++|++....
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            6    4555633  8888888888888886    477765577888888888888765433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.3e-21  Score=192.90  Aligned_cols=202  Identities=24%  Similarity=0.242  Sum_probs=115.5

Q ss_pred             CCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514          358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT  437 (636)
Q Consensus       358 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  437 (636)
                      +++++++++++++.++...+...     +.+++|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            34445555555554443322111     4455556666555555555555566666666666655533221  4555666


Q ss_pred             EEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514          438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG  517 (636)
Q Consensus       438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  517 (636)
                      +|++++|.++.++. .+..+++|++|++++|++++..+..+..     +++|++|++++|++++..+..|..+++|+.|+
T Consensus        81 ~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRG-----LGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTT-----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcC-----CCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            66666666654432 3555666666666666665444443332     24556666666666655555566667777777


Q ss_pred             CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514          518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG  573 (636)
Q Consensus       518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  573 (636)
                      +++|++.+..+..|..+++|++|++++|+++. +|..+...+.|+.+++++|++..
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence            77777765555555667777777777777764 44555556677777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=201.51  Aligned_cols=204  Identities=21%  Similarity=0.187  Sum_probs=130.3

Q ss_pred             CCccEEECccCcCCccCCccc--CCCCCCcEEEccCCcCCcccC----CCCCCCCCCCEEECCCCCCCCCcchhhcCCCC
Q 037514          386 QKLSVIDLSNNKFFGGILSSL--CSLPSLYWLRLGGNNLSGELS----TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCN  459 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  459 (636)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+.++..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            457777777777766666665  667777777777777665333    22345667777777777777766666777777


Q ss_pred             CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCch----hhcCCCCCCEEeCcCCccCCccChhhhCC-
Q 037514          460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPD----SLGNLLCLEYLGLSENSFLGSLPTSIGNL-  534 (636)
Q Consensus       460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l-  534 (636)
                      |++|++++|++.+..... .......+++|++|++++|+++ .++.    .++.+++|++|+|++|++.+..|..+..+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLM-AALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHH-TTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCEEECCCCCCccchhhh-HHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            777777777765321100 0000012466777777777776 2232    24566777777777777776666666655 


Q ss_pred             --CCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCC
Q 037514          535 --SHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       535 --~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                        ++|++|++++|+++. +|..+.  ++|++|++++|++++ +|.  +..+++|+.|++++|+++
T Consensus       249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCC
Confidence              577777777777774 344443  677777887777774 343  556777788888877543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=200.40  Aligned_cols=229  Identities=21%  Similarity=0.211  Sum_probs=184.0

Q ss_pred             CCCccEEEccCCCCCcCCCh---hhcCCCCcceeccccccCCCcchhhH--HhhcCCCccEEECccCcCCccCC----cc
Q 037514          335 PFSLRQMAINDCQLGSAFPS---WLKTQASVFKLTLSNAAISDTIPDWF--WGVISQKLSVIDLSNNKFFGGIL----SS  405 (636)
Q Consensus       335 ~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~----~~  405 (636)
                      ...++.+.+.++.+......   ....+++|++|++++|.+.+..|..+  ...  ++|++|++++|.+++..+    ..
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--LALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--BCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--CCCCEEEeecccccchhhhhHHHH
Confidence            34688899998887542111   12234679999999999999988876  555  899999999999987544    34


Q ss_pred             cCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCC---cc-hhhcCCCCCCeEeCcCCcCCCchhhhHHh-
Q 037514          406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQL---PS-TSMGNLCNLHSLDISYNHITGEIKELTNA-  480 (636)
Q Consensus       406 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-  480 (636)
                      +..+++|++|++++|++.+..+..+..+++|++|++++|++.+.   .+ ..+..+++|++|++++|+++.. +..... 
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHH
Confidence            55789999999999999988888999999999999999998752   22 2246889999999999999743 332211 


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchhhcCC---CCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccC
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDSLGNL---LCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQ  557 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  557 (636)
                      +..  +++|++|++++|++++..|..+..+   ++|++|++++|++. .+|..+.  ++|++|++++|++++. |. +..
T Consensus       220 ~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~  292 (310)
T 4glp_A          220 AAA--GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE  292 (310)
T ss_dssp             HHH--TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred             Hhc--CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence            222  3788999999999998878777776   69999999999999 6777664  8999999999999986 33 688


Q ss_pred             CCCCCEEECcCCccee
Q 037514          558 LSEPYMLDLYGNSWEG  573 (636)
Q Consensus       558 l~~L~~L~L~~n~l~~  573 (636)
                      +++|+.|++++|+++.
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            8999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=9.9e-22  Score=192.38  Aligned_cols=179  Identities=23%  Similarity=0.283  Sum_probs=95.7

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++..+..+++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            4444444444444331  23444555555555555555444444555555555555555555555544555555555555


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      ++|++++..+..+.     .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|
T Consensus       141 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          141 AHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            55555544333222     1244555566655555444445556666666666666666555555566666666666666


Q ss_pred             cccccccccccCCCCCCEEECcCCcceeecChh
Q 037514          546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEK  578 (636)
Q Consensus       546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  578 (636)
                      .+.+.       ++.|+.++++.|.++|.+|..
T Consensus       216 ~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          216 PWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             Ccccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            55432       345566666666666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5e-22  Score=190.64  Aligned_cols=197  Identities=19%  Similarity=0.224  Sum_probs=162.9

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCc-CCcccCCCCCCCCCCCEEECCC-CCCCCCcchhhcCCCCCCeE
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNN-LSGELSTSLPDCSRLTALDIGG-NRFLQLPSTSMGNLCNLHSL  463 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  463 (636)
                      +++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++++++..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            578888888888887777788888999999999997 7766666788899999999998 88988888888899999999


Q ss_pred             eCcCCcCCCchhhhHHhhhcCCCCccc---EEEcccC-cCCCCCchhhcCCCCCC-EEeCcCCccCCccChhhhCCCCCC
Q 037514          464 DISYNHITGEIKELTNAFSACNVSTLE---TLDLASN-KLGGNLPDSLGNLLCLE-YLGLSENSFLGSLPTSIGNLSHLR  538 (636)
Q Consensus       464 ~l~~n~l~~~~~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~~~~l~~l~~L~-~L~Ls~n~~~~~~p~~l~~l~~L~  538 (636)
                      ++++|++++ +|. +..     +++|+   +|++++| ++++..+..|.++++|+ .|++++|++....+..+.. ++|+
T Consensus       111 ~l~~n~l~~-lp~-~~~-----l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~  182 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTK-----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD  182 (239)
T ss_dssp             EEEEECCCS-CCC-CTT-----CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred             eCCCCCCcc-ccc-ccc-----ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence            999999886 443 332     35556   9999999 88876677799999999 9999999998433444554 8999


Q ss_pred             eEeCcCcc-ccccccccccCC-CCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          539 ALYLSFNV-MSRIISENIGQL-SEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       539 ~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      +|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|..   .+++|+.|+++++
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence            99999995 998888889999 99999999999998 47765   6788999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3e-22  Score=204.81  Aligned_cols=221  Identities=20%  Similarity=0.273  Sum_probs=111.7

Q ss_pred             hcCCC-CcceeccccccCCCcchhhHHhhc---CCCccEEECccCcCCccCCcc----cCCC-CCCcEEEccCCcCCccc
Q 037514          356 LKTQA-SVFKLTLSNAAISDTIPDWFWGVI---SQKLSVIDLSNNKFFGGILSS----LCSL-PSLYWLRLGGNNLSGEL  426 (636)
Q Consensus       356 l~~~~-~L~~L~L~~n~~~~~~~~~~~~~~---~~~L~~L~ls~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~  426 (636)
                      +..++ +|++|++++|.+.+..+..+....   .++|++|++++|.+++..+..    +..+ ++|++|++++|++++..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            33344 444444444444444343333310   034555555555544333322    2222 45556666666554332


Q ss_pred             CCC----CCC-CCCCCEEECCCCCCCCCcch----hhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEccc
Q 037514          427 STS----LPD-CSRLTALDIGGNRFLQLPST----SMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLAS  496 (636)
Q Consensus       427 ~~~----~~~-l~~L~~L~L~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~  496 (636)
                      +..    +.. .++|++|++++|.+++....    .+...+ +|++|++++|++++..+..+...-....++|++|++++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            222    222 24666666666666543322    223343 66666666666665555444332111113566666666


Q ss_pred             CcCCCC----CchhhcC-CCCCCEEeCcCCccCCccCh----hhhCCCCCCeEeCcCccccccc-------cccccCCCC
Q 037514          497 NKLGGN----LPDSLGN-LLCLEYLGLSENSFLGSLPT----SIGNLSHLRALYLSFNVMSRII-------SENIGQLSE  560 (636)
Q Consensus       497 n~l~~~----~~~~l~~-l~~L~~L~Ls~n~~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~  560 (636)
                      |.+++.    ++..+.. .++|++|+|++|.+.+..+.    .+..+++|++|++++|.+.+..       +..+..+++
T Consensus       206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~  285 (362)
T 3goz_A          206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK  285 (362)
T ss_dssp             SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred             CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence            666642    3334444 34677777777766654332    2345566777777777644332       234556677


Q ss_pred             CCEEECcCCcceeecC
Q 037514          561 PYMLDLYGNSWEGVIT  576 (636)
Q Consensus       561 L~~L~L~~n~l~~~~~  576 (636)
                      |+.|++++|++.+..+
T Consensus       286 L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          286 IILVDKNGKEIHPSHS  301 (362)
T ss_dssp             EEEECTTSCBCCGGGC
T ss_pred             eEEEecCCCcCCCcch
Confidence            7777777777665433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.2e-22  Score=205.89  Aligned_cols=246  Identities=20%  Similarity=0.267  Sum_probs=153.9

Q ss_pred             ccEEEccCCCCCcCCChhhcCC--CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCcc-CCcccCCCCCCcE
Q 037514          338 LRQMAINDCQLGSAFPSWLKTQ--ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG-ILSSLCSLPSLYW  414 (636)
Q Consensus       338 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~  414 (636)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+..+ ..  ++|++|++++|.+++. .+..+..+++|++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~--~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SP--FRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CC--BCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc-cC--CCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            444444444443   3344444  566677777776666555432 23  6677777777776554 5556667777777


Q ss_pred             EEccCCcCCcccCCCCCCCCCCCEEECCCC-CCCCC-cchhhcCCCCCCeEeCcCC-cCCCc-hhhhHHhhhcCCCC-cc
Q 037514          415 LRLGGNNLSGELSTSLPDCSRLTALDIGGN-RFLQL-PSTSMGNLCNLHSLDISYN-HITGE-IKELTNAFSACNVS-TL  489 (636)
Q Consensus       415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~-~L  489 (636)
                      |++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..     ++ +|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----l~~~L  197 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-----VSETI  197 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-----SCTTC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-----cccCC
Confidence            777777776666666666777777777777 55542 3444667777777777777 66643 3333332     25 66


Q ss_pred             cEEEcccC--cCC-CCCchhhcCCCCCCEEeCcCCc-cCCccChhhhCCCCCCeEeCcCcc-ccccccccccCCCCCCEE
Q 037514          490 ETLDLASN--KLG-GNLPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNLSHLRALYLSFNV-MSRIISENIGQLSEPYML  564 (636)
Q Consensus       490 ~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  564 (636)
                      ++|++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            77777777  444 3455666777778888888777 555666677777778888887774 333222356677778888


Q ss_pred             ECcCCcceeecChhhhcCC-CCCCeeeCCCCCCCcc
Q 037514          565 DLYGNSWEGVITEKHFRNL-SGLDYLTISSSNSSLV  599 (636)
Q Consensus       565 ~L~~n~l~~~~~~~~~~~l-~~L~~L~ls~n~~~~~  599 (636)
                      ++++|     +++..+..+ ..++.|++++|.++..
T Consensus       278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             eccCc-----cCHHHHHHHHhhCcceEEecccCccc
Confidence            88777     333334443 2366677777765543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.1e-21  Score=185.65  Aligned_cols=180  Identities=19%  Similarity=0.252  Sum_probs=117.3

Q ss_pred             CccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514          387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS  466 (636)
Q Consensus       387 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  466 (636)
                      ..++++++++.++. +|..+.  ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45677777777753 333332  567777777777776666667777777777777777777776667777777777777


Q ss_pred             CCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcc
Q 037514          467 YNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNV  546 (636)
Q Consensus       467 ~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  546 (636)
                      +|++++..+..+..     +++|++|++++|++++..+..+..+++|+.|+|++|++.+..+..|..+++|++|++++|+
T Consensus        92 ~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           92 NNQLASLPLGVFDH-----LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccccChhHhcc-----cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            77776554444332     2555666666666665555556666666666666666665555556666666666666666


Q ss_pred             ccccccccccCCCCCCEEECcCCcceee
Q 037514          547 MSRIISENIGQLSEPYMLDLYGNSWEGV  574 (636)
Q Consensus       547 l~~~~~~~~~~l~~L~~L~L~~n~l~~~  574 (636)
                      +++..+..+..+++|+.|++++|++.+.
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6666665666666666666666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.8e-21  Score=186.85  Aligned_cols=204  Identities=19%  Similarity=0.236  Sum_probs=161.7

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCC-CCcccccccccccccccCCCCCCCCEEecCC-c
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQN-LKEYQITKELWVSDLIWLPDLSSSRYLHLEG-M  145 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n  145 (636)
                      ..+|. +.  +++++|++++|++++..+..|+++++|++|++++|. ++.++...         +.++++|++|++++ |
T Consensus        24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n   91 (239)
T 2xwt_C           24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTR   91 (239)
T ss_dssp             SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEET
T ss_pred             cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCC
Confidence            34565 43  389999999999998888889999999999999997 88876543         78899999999998 8


Q ss_pred             cCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCC---EEEccCC-cCCcCCCccccCCCCCC-EEeCcCCc
Q 037514          146 KLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS---ILELSYD-NFNSQIPQWLFNISTLV-TLNLRSSQ  220 (636)
Q Consensus       146 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~p~~l~~l~~L~-~L~L~~n~  220 (636)
                      .++.++.  ..|..+++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|+
T Consensus        92 ~l~~i~~--~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           92 NLTYIDP--DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             TCCEECT--TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             CeeEcCH--HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            9988753  578889999999999999887 444 78888888   9999999 88886667788899999 99999998


Q ss_pred             CCCCCCCCCCCCCCCCCEEEccccc-CccccchhhhccccCCcccchhhccCcCcccccccccCC-CCCCEEEccCCcCc
Q 037514          221 LSGSIPKFPPGKMCNLRRLDLAING-FSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQL-AELVALNLYRNSWK  298 (636)
Q Consensus       221 l~~~~p~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~  298 (636)
                      ++ .+|...+.. ++|++|++++|. +++..+..                           +..+ ++|+.|++++|+++
T Consensus       168 l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~---------------------------~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          168 FT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA---------------------------FGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CC-EECTTTTTT-CEEEEEECTTCTTCCEECTTT---------------------------TTTCSBCCSEEECTTCCCC
T ss_pred             Cc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHH---------------------------hhccccCCcEEECCCCccc
Confidence            88 666544555 788999998884 76544333                           3444 58888999998887


Q ss_pred             cccChhhhcCCCCCCEEEccCC
Q 037514          299 GIITENHFQNLTKLNSLYLSSS  320 (636)
Q Consensus       299 ~~i~~~~~~~l~~L~~L~L~~n  320 (636)
                      + +|..   .+++|+.|+++++
T Consensus       219 ~-l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          219 A-LPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             C-CCCT---TCTTCSEEECTTC
T ss_pred             c-CChh---HhccCceeeccCc
Confidence            6 5542   5777888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.2e-23  Score=214.22  Aligned_cols=207  Identities=21%  Similarity=0.233  Sum_probs=131.4

Q ss_pred             CCccEEECccCcCCc----cCCcccCCCCCCcEEEccCCcCCcccCCC----CCCC---------CCCCEEECCCCCCCC
Q 037514          386 QKLSVIDLSNNKFFG----GILSSLCSLPSLYWLRLGGNNLSGELSTS----LPDC---------SRLTALDIGGNRFLQ  448 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~~  448 (636)
                      ++|++|++++|.+.+    .++..+..+++|++|++++|.++...+..    +..+         ++|++|++++|+++.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            555666666665554    23444555666666666666654322222    2222         677778888777763


Q ss_pred             -Ccc---hhhcCCCCCCeEeCcCCcCCCchhhh-HH-hhhcCCCCcccEEEcccCcCC----CCCchhhcCCCCCCEEeC
Q 037514          449 -LPS---TSMGNLCNLHSLDISYNHITGEIKEL-TN-AFSACNVSTLETLDLASNKLG----GNLPDSLGNLLCLEYLGL  518 (636)
Q Consensus       449 -~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~-~~-~~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L  518 (636)
                       ..+   ..+..+++|++|++++|+++...... .. .+..  +++|++|+|++|.++    ..+|..+..+++|+.|+|
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence             222   34567778888888888776321111 11 2222  367788888888875    456777888888888888


Q ss_pred             cCCccCCc----cChhhhC--CCCCCeEeCcCccccc----cccccc-cCCCCCCEEECcCCcceeecC--hhhhcCCCC
Q 037514          519 SENSFLGS----LPTSIGN--LSHLRALYLSFNVMSR----IISENI-GQLSEPYMLDLYGNSWEGVIT--EKHFRNLSG  585 (636)
Q Consensus       519 s~n~~~~~----~p~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~  585 (636)
                      ++|.+.+.    ++..+..  +++|++|++++|.+++    .+|..+ .++++|++|++++|++++..+  ......+++
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST  331 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence            88888765    4566643  8888889998888887    366666 567889999999998886553  333344455


Q ss_pred             CCeeeCCCC
Q 037514          586 LDYLTISSS  594 (636)
Q Consensus       586 L~~L~ls~n  594 (636)
                      ++..++...
T Consensus       332 ~~~~~l~~~  340 (386)
T 2ca6_A          332 RGRGELDEL  340 (386)
T ss_dssp             HTCCEECCC
T ss_pred             cCcchhhhc
Confidence            555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.4e-20  Score=181.90  Aligned_cols=177  Identities=21%  Similarity=0.290  Sum_probs=99.5

Q ss_pred             CCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCccc
Q 037514          411 SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLE  490 (636)
Q Consensus       411 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~  490 (636)
                      ..++++++++.++ .+|..+.  +.+++|++++|.+.+..+..+..+++|++|++++|++++..+..+..     +++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~   86 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-----LTELG   86 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----CTTCC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----CCcCC
Confidence            3455566665554 3444333  45666666666666555555556666666666666665544443322     24456


Q ss_pred             EEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCc
Q 037514          491 TLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNS  570 (636)
Q Consensus       491 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  570 (636)
                      +|++++|++++..+..+..+++|++|+|++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            66666666665444555566666666666666654444445556666666666666665555555566666666666666


Q ss_pred             ceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          571 WEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       571 l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      +.+ ++...|..+++|++|++++|++
T Consensus       167 l~~-~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          167 LQS-VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCc-cCHHHHhCCCCCCEEEeeCCce
Confidence            553 4444455566666666666643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.7e-20  Score=187.00  Aligned_cols=196  Identities=18%  Similarity=0.263  Sum_probs=129.7

Q ss_pred             CCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514          358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT  437 (636)
Q Consensus       358 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  437 (636)
                      .+++|++|++++|.+... + .+..+  ++|++|++++|.+.+..+  +..+++|++|++++|++.+.  ..+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l--~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYL--NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGC--TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhcc--CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            345566666666655543 2 23444  667777777776655433  66777777777777776642  2466777777


Q ss_pred             EEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514          438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG  517 (636)
Q Consensus       438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  517 (636)
                      +|++++|.+++..+  +..+++|++|++++|++++..+     +.  .+++|+.|++++|++++. +. +..+++|+.|+
T Consensus       111 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~--~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-----LA--GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLK  179 (308)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GG--GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             EEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-----cc--CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence            77777777776543  6777777777777777765433     22  236667777777777743 33 77777888888


Q ss_pred             CcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          518 LSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      +++|.+.+..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++ .|.
T Consensus       180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~  234 (308)
T 1h6u_A          180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPV  234 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCE
T ss_pred             CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCe
Confidence            88887774433  6777788888888887777653  6777788888888887764 444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.4e-20  Score=185.84  Aligned_cols=211  Identities=21%  Similarity=0.319  Sum_probs=174.7

Q ss_pred             cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514          362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI  441 (636)
Q Consensus       362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  441 (636)
                      +..+.+..+.+.+....  ..+  ++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        21 ~~~~~l~~~~~~~~~~~--~~l--~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L   92 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTVTQ--ADL--DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (308)
T ss_dssp             HHHHHTTCSSTTSEECH--HHH--HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHhCCCCcCceecH--HHc--CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence            33445566666654432  234  7899999999999764 3 57889999999999999985544  899999999999


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      ++|.+++..  .+..+++|++|++++|++++..+     +.  .+++|++|++++|++++..+  +..+++|+.|++++|
T Consensus        93 ~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-----l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A           93 SGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-----LA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG-----GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cCCcCCCch--hhcCCCCCCEEECCCCCCCCchh-----hc--CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC
Confidence            999999864  58899999999999999986432     22  34889999999999995443  889999999999999


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      .+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|++.+ ++.  +..+++|++|++++|++..
T Consensus       162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeec
Confidence            9986443  8999999999999999998755  8899999999999999986 443  7899999999999997643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.9e-21  Score=193.99  Aligned_cols=224  Identities=19%  Similarity=0.179  Sum_probs=185.1

Q ss_pred             CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcc-cCCCCCCCCCCCE
Q 037514          360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGE-LSTSLPDCSRLTA  438 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  438 (636)
                      ..++.++++++.+.   +..+.....+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34789999999887   3444443337899999999999877665 55799999999999998765 7777889999999


Q ss_pred             EECCCCCCCCCcchhhcCCCCCCeEeCcCC-cCCCc-hhhhHHhhhcCCCCcccEEEcccC-cCCCC-CchhhcCCC-CC
Q 037514          439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYN-HITGE-IKELTNAFSACNVSTLETLDLASN-KLGGN-LPDSLGNLL-CL  513 (636)
Q Consensus       439 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L  513 (636)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..     +++|++|++++| .+++. ++..+..++ +|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-----CCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            999999999877778999999999999999 67643 4443433     377899999999 88854 577788999 99


Q ss_pred             CEEeCcCC--ccC-CccChhhhCCCCCCeEeCcCcc-ccccccccccCCCCCCEEECcCCcceeecCh--hhhcCCCCCC
Q 037514          514 EYLGLSEN--SFL-GSLPTSIGNLSHLRALYLSFNV-MSRIISENIGQLSEPYMLDLYGNSWEGVITE--KHFRNLSGLD  587 (636)
Q Consensus       514 ~~L~Ls~n--~~~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~  587 (636)
                      ++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|.-  ..+.  ..+..+++|+
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTLK  275 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGGGGCTTCC
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHHhcCCCCC
Confidence            99999999  455 4677788899999999999999 7777788899999999999999962  2222  2478899999


Q ss_pred             eeeCCCC
Q 037514          588 YLTISSS  594 (636)
Q Consensus       588 ~L~ls~n  594 (636)
                      +|++++|
T Consensus       276 ~L~l~~~  282 (336)
T 2ast_B          276 TLQVFGI  282 (336)
T ss_dssp             EEECTTS
T ss_pred             EEeccCc
Confidence            9999999

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.4e-20  Score=176.43  Aligned_cols=162  Identities=23%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      +++++|++++|++++..+..|+++++|++|++++|++++++...         +.++++|++|++++|.++.++.  ..+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~--~~~   96 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV---------FNKLTSLTYLNLSTNQLQSLPN--GVF   96 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------cCCCCCcCEEECCCCcCCccCH--hHh
Confidence            48899999999998777777888999999999999888765532         6778888888888888887743  457


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                      ..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+        .+++|+
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~  168 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIR  168 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTH
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHH
Confidence            788888888888888887777777888888888888888887655567778888888888886653        345677


Q ss_pred             EEEcccccCccccchhhhccc
Q 037514          238 RLDLAINGFSGEKEQFIQTLS  258 (636)
Q Consensus       238 ~L~L~~n~~~~~~~~~l~~l~  258 (636)
                      +|+++.|.++|.+|..++.++
T Consensus       169 ~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          169 YLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHHHHHHCTTTBBCTTSSBC
T ss_pred             HHHHHHHhCCceeeccCcccc
Confidence            777777777777776555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.3e-18  Score=162.99  Aligned_cols=179  Identities=26%  Similarity=0.295  Sum_probs=148.9

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++++...         +.++++|++|++++|.++.++.  ..|..+
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~--~~~~~l   75 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGV---------FDELTSLTQLYLGGNKLQSLPN--GVFNKL   75 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTTC
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhh---------hcccccCcEEECCCCccCccCh--hhcCCC
Confidence            67888888887 455444  468999999999998876542         7899999999999999998854  568899


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD  240 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  240 (636)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|+
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEE
Confidence            99999999999999888888999999999999999999977777899999999999999998 45544588999999999


Q ss_pred             cccccCccccchhhhccccCCcccchhhc--cCcCcccccccccCCCC
Q 037514          241 LAINGFSGEKEQFIQTLSGCNNSTLETLE--TQRMNGTISENIGQLAE  286 (636)
Q Consensus       241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~--~~~~~~~~~~~l~~l~~  286 (636)
                      +++|.+.+..+            .++.|+  .++++|.+|.+++.++.
T Consensus       155 l~~N~~~~~~~------------~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          155 LHDNPWDCTCP------------GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCSCCBCCCTT------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ecCCCeecCCC------------CHHHHHHHHHhCCceeeccCccccC
Confidence            99998875433            555555  66677777777666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.3e-19  Score=184.14  Aligned_cols=181  Identities=16%  Similarity=0.090  Sum_probs=83.9

Q ss_pred             CCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchh-hHHhhcCCCccE-EECccCcCCccCCcccCCCCCCc
Q 037514          336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPD-WFWGVISQKLSV-IDLSNNKFFGGILSSLCSLPSLY  413 (636)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~  413 (636)
                      .++++|++++|+++...+.+|.++++|++|+|++|++.+.+|. +|.++  +++.+ +.+.+|+++...+..|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L--~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC--TTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc--hhhhhhhcccCCcccccCchhhhhccccc
Confidence            3455555555555544444555555555555555555443332 23333  33332 34444555554455555555555


Q ss_pred             EEEccCCcCCcccCCCCCCCCCCCEEECCC-CCCCCCcchhhcCCC-CCCeEeCcCCcCCCchhhhHHhhhcCCCCcccE
Q 037514          414 WLRLGGNNLSGELSTSLPDCSRLTALDIGG-NRFLQLPSTSMGNLC-NLHSLDISYNHITGEIKELTNAFSACNVSTLET  491 (636)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~  491 (636)
                      +|++++|++.+..+..+....++..+++.+ +.+..+.+..|..+. .++.|++++|+++...+..+.      ..+|++
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~------~~~L~~  181 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN------GTQLDE  181 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST------TEEEEE
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc------ccchhH
Confidence            555555555544333444444455555533 344444444444432 344555555555432222211      123455


Q ss_pred             EEccc-CcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514          492 LDLAS-NKLGGNLPDSLGNLLCLEYLGLSENSFL  524 (636)
Q Consensus       492 L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~~~  524 (636)
                      |++++ |.++...++.|.++++|+.||+++|+++
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            55543 3333222234455555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.5e-19  Score=180.17  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             CCCCCCCCEEecCCccCCCC-CChhhhhCCCCCCCE-EEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCC
Q 037514          131 LPDLSSSRYLHLEGMKLSKV-TNWLQVVNELPSLVE-LHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNI  208 (636)
Q Consensus       131 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l  208 (636)
                      |.++++|++|+|++|++.+. +.  ++|.+++++++ +.+++|++..+.+.+|..+++|++|++++|.+....+..+...
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             HcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence            44444444444444444322 11  23444444443 3334445555445555555555555555555554333334444


Q ss_pred             CCCCEEeCcCC-cCCCCCCCCCCCCCC-CCCEEEcccccCc
Q 037514          209 STLVTLNLRSS-QLSGSIPKFPPGKMC-NLRRLDLAINGFS  247 (636)
Q Consensus       209 ~~L~~L~L~~n-~l~~~~p~~~~~~l~-~L~~L~L~~n~~~  247 (636)
                      .++..+++.++ ++. .++...+..+. .++.|++++|.++
T Consensus       128 ~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             chhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence            44555555432 232 33332233332 3555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=5.5e-19  Score=166.62  Aligned_cols=133  Identities=19%  Similarity=0.274  Sum_probs=71.3

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      +++++|++++|.+++..+..|..+++|++|+|++|.++++.+..         |.++++|++|++++|.++.++.  ..|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~--~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA---------FQGLRSLNSLVLYGNKITELPK--SLF  100 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT---------TTTCSSCCEEECCSSCCCCCCT--TTT
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------hhCCcCCCEEECCCCcCCccCH--hHc
Confidence            46677777777766665556666667777777766666553322         5555555555555555554432  334


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQL  221 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l  221 (636)
                      ..+++|++|+|++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            4455555555555555544444444455555555555544443333344444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=4.3e-19  Score=167.34  Aligned_cols=161  Identities=22%  Similarity=0.377  Sum_probs=95.7

Q ss_pred             cEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514          413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL  492 (636)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  492 (636)
                      +.++++++.++ .+|..+.  +++++|++++|.++++++..|..+++|+                             +|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~-----------------------------~L   61 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLR-----------------------------RI   61 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCC-----------------------------EE
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCC-----------------------------EE
Confidence            34555555554 3343332  4555555555555555544454444444                             45


Q ss_pred             EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      +|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        62 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             ECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            55555555444556666666666666666666544445566666777777777666666666666777777777777766


Q ss_pred             eecChhhhcCCCCCCeeeCCCCCCCccccccccccc
Q 037514          573 GVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIA  608 (636)
Q Consensus       573 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~  608 (636)
                      + ++.+.|..+++|++|++++|  ...|+|...|+.
T Consensus       142 ~-~~~~~~~~l~~L~~L~L~~N--~~~c~c~l~~l~  174 (220)
T 2v9t_B          142 T-IAKGTFSPLRAIQTMHLAQN--PFICDCHLKWLA  174 (220)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSS--CEECSGGGHHHH
T ss_pred             E-ECHHHHhCCCCCCEEEeCCC--CcCCCCccHHHH
Confidence            3 45555666777777777777  344455555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.5e-18  Score=169.67  Aligned_cols=192  Identities=25%  Similarity=0.338  Sum_probs=149.4

Q ss_pred             cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514          362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI  441 (636)
Q Consensus       362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  441 (636)
                      +..+.+..+.+.+..+.  ..+  ++|++|++++|.+...  ..+..+++|++|++++|++++..+  +..+++|++|++
T Consensus        26 ~~~~~l~~~~~~~~~~~--~~l--~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQ--NEL--NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHTTCSCTTSEECH--HHH--HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHHHhcCCCcccccch--hhc--CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            44455666666654433  233  6889999999988654  247778999999999999886544  888899999999


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      ++|.+++...  +..+++|++|++++|++++. +    .+..  +++|+.|++++|++++.  ..+..+++|+.|++++|
T Consensus        98 ~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~----~l~~--l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A           98 DENKVKDLSS--LKDLKKLKSLSLEHNGISDI-N----GLVH--LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-G----GGGG--CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CCCcCCCChh--hccCCCCCEEECCCCcCCCC-h----hhcC--CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence            9999887543  88899999999999998753 2    2222  37789999999999854  56888999999999999


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      ++.+..|  +..+++|++|++++|.+++. + .+..+++|+.|++++|++.. .|.
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~-~~~  217 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN-KPI  217 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC-CCE
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC-Ccc
Confidence            9886554  88899999999999999875 3 48889999999999998874 444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.5e-18  Score=168.57  Aligned_cols=173  Identities=21%  Similarity=0.277  Sum_probs=129.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+++++.           +.++++|++|++++|.++..+  
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-----------l~~l~~L~~L~l~~n~l~~~~--  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-----------LANLKNLGWLFLDENKVKDLS--  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCGG--
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-----------cccCCCCCEEECCCCcCCCCh--
Confidence            34567888999998888744 3 48888889999999888887653           778888888888888887753  


Q ss_pred             hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514          154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM  233 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  233 (636)
                        .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+. +  ++..+
T Consensus       107 --~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l  177 (291)
T 1h6t_A          107 --SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V--PLAGL  177 (291)
T ss_dssp             --GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGTTC
T ss_pred             --hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-h--hhcCC
Confidence              477888888888888888764  4577788888888888888773  5677888888888888887743 2  26777


Q ss_pred             CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcc
Q 037514          234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKG  299 (636)
Q Consensus       234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  299 (636)
                      ++|++|++++|.+++.                            + .+..+++|+.|++++|++..
T Consensus       178 ~~L~~L~L~~N~i~~l----------------------------~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDL----------------------------R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCCEEECCSSCCCBC----------------------------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CccCEEECCCCcCCCC----------------------------h-hhccCCCCCEEECcCCcccC
Confidence            7888888887776632                            1 13445677777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=177.99  Aligned_cols=155  Identities=29%  Similarity=0.300  Sum_probs=81.8

Q ss_pred             CCEEECCCCCCCCCcchhhc-CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514          436 LTALDIGGNRFLQLPSTSMG-NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE  514 (636)
Q Consensus       436 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  514 (636)
                      +++|++++|.+++..+..+. .+++|++|++++|++++..+..+.     .+++|++|+|++|++++..+..|.++++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-----PVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-----CCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            44444444444444444443 444455555555544433333222     123445555555555544444555666666


Q ss_pred             EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccc---cCCCCCCEEECcCCcceeecChhhhcCCCC--CCee
Q 037514          515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENI---GQLSEPYMLDLYGNSWEGVITEKHFRNLSG--LDYL  589 (636)
Q Consensus       515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L  589 (636)
                      .|+|++|++.+..|..|.++++|++|+|++|+++...+..|   ..+++|+.|+|++|++. .+|...+..++.  ++.|
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTE
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceE
Confidence            66666666665555566666666666666666665544444   44666666666666665 355555555554  3566


Q ss_pred             eCCCCCC
Q 037514          590 TISSSNS  596 (636)
Q Consensus       590 ~ls~n~~  596 (636)
                      ++++|+.
T Consensus       195 ~l~~N~~  201 (361)
T 2xot_A          195 YLHNNPL  201 (361)
T ss_dssp             ECCSSCE
T ss_pred             EecCCCc
Confidence            6666633

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.5e-18  Score=182.53  Aligned_cols=182  Identities=29%  Similarity=0.352  Sum_probs=100.0

Q ss_pred             CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEE
Q 037514          361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD  440 (636)
Q Consensus       361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  440 (636)
                      +++.|++++|.+++ +|..+.    ++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            45555555555544 222111    45666666666655 233   334566666666666654 444 433  666666


Q ss_pred             CCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514          441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE  520 (636)
Q Consensus       441 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (636)
                      +++|.+++++.    .+++|+.|++++|++++ +|.        .+++|++|++++|++++ +|. +.  ++|+.|+|++
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence            66666665433    45666666666666654 222        12555666666666664 444 43  6666666666


Q ss_pred             CccCCccChhhhCCCCC-------CeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          521 NSFLGSLPTSIGNLSHL-------RALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      |.++ .+|. +..  +|       +.|++++|+++. +|..+..+++|+.|++++|++++.+|.
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            6666 4444 333  45       666666666664 344455566666666666666665555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.1e-17  Score=178.74  Aligned_cols=180  Identities=24%  Similarity=0.289  Sum_probs=149.6

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      .+++.|++++|.+++ +|..+  +++|++|++++|+++ .+|   ..+++|++|++++|.+++++.  +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            489999999999987 55544  389999999999998 566   457899999999999999655  544  9999999


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      ++|++++ +|.        .+++|+.|++++|++++ +|.   .+++|+.|+|++|.+.+ +|. |.  ++|+.|++++|
T Consensus       128 s~N~l~~-lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          128 DNNQLTM-LPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             CCCcCCC-CCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            9999987 443        24789999999999995 665   57899999999999986 776 65  89999999999


Q ss_pred             cccccccccccCCCCC-------CEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcc
Q 037514          546 VMSRIISENIGQLSEP-------YMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLV  599 (636)
Q Consensus       546 ~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~  599 (636)
                      +++. +|. +..  +|       +.|++++|+++ .+|...+. +++|+.|++++|+++..
T Consensus       191 ~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          191 LLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred             CCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence            9995 444 544  67       99999999998 58987555 99999999999987643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.5e-18  Score=159.28  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             EEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcc-hhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514          414 WLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPS-TSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETL  492 (636)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  492 (636)
                      .+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..+..     +++|++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----l~~L~~L   86 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----ASGVNEI   86 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEE
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----CCCCCEE
Confidence            4555555554 2343332  234556666665555432 33455555555555555555433332221     2344555


Q ss_pred             EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      ++++|++++..+..|.++++|++|+|++|++.+..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555555444455555555666666666555555555555555666666656555555555555555555555555555


Q ss_pred             eecC
Q 037514          573 GVIT  576 (636)
Q Consensus       573 ~~~~  576 (636)
                      +..+
T Consensus       167 c~c~  170 (220)
T 2v70_A          167 CNCY  170 (220)
T ss_dssp             CSGG
T ss_pred             CCCc
Confidence            4433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.7e-18  Score=160.32  Aligned_cols=136  Identities=24%  Similarity=0.256  Sum_probs=88.8

Q ss_pred             CCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCc
Q 037514          102 SNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPF  181 (636)
Q Consensus       102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  181 (636)
                      ++|++|++++|.++++.+..         +.++++|++|++++|.++.++.  ..|..+++|++|+|++|++++..+..|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~N~l~~i~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGV---------FDSLINLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCEEEcCCCccCccCHHH---------hhCccCCcEEECCCCCCCCcCh--hhcccCCCcCEEECCCCcCCccChhHh
Confidence            44444444444444433221         4444455555555555544432  356667777777777777777666677


Q ss_pred             cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCcccc
Q 037514          182 LNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEK  250 (636)
Q Consensus       182 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~  250 (636)
                      ..+++|++|++++|.++. +|..+..+++|++|++++|++. .+|...+..+++|+.|++++|.+.+..
T Consensus       109 ~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            777888888888887774 6777788888888888888877 444444777888888888888877543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4e-18  Score=160.68  Aligned_cols=162  Identities=18%  Similarity=0.239  Sum_probs=138.1

Q ss_pred             CCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhh-hHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCC
Q 037514          436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKE-LTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLE  514 (636)
Q Consensus       436 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  514 (636)
                      -+++++++|.++.++.. +  ...+++|++++|++++..+. .+..     +++|++|++++|++++..+..|.++++|+
T Consensus        13 ~~~l~~s~n~l~~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~-----l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-I--PQYTAELRLNNNEFTVLEATGIFKK-----LPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCEECCCCCGGG-----CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEeEeCCCCcccCccC-C--CCCCCEEEcCCCcCCccCchhhhcc-----CCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            35899999999987653 3  34679999999999876443 3332     37789999999999987788999999999


Q ss_pred             EEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          515 YLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       515 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      +|+|++|.+.+..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..| ..|..+++|++|++++|
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence            99999999998888889999999999999999999999999999999999999999996444 56899999999999999


Q ss_pred             CCCccccccccccc
Q 037514          595 NSSLVFNIRHDWIA  608 (636)
Q Consensus       595 ~~~~~~~~~~~~~~  608 (636)
                      +  ..|+|...|+.
T Consensus       164 ~--l~c~c~l~~l~  175 (220)
T 2v70_A          164 P--FNCNCYLAWLG  175 (220)
T ss_dssp             C--EECSGGGHHHH
T ss_pred             C--CcCCCchHHHH
Confidence            4  55566556654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=3.9e-17  Score=155.01  Aligned_cols=143  Identities=20%  Similarity=0.220  Sum_probs=127.5

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514           68 SPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL  147 (636)
Q Consensus        68 ~~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  147 (636)
                      ..+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.++.++...         +.++++|++|++++|.+
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---------~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---------FDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCC
T ss_pred             CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---------cccCCCcCEEECCCCcC
Confidence            45666554  79999999999999998999999999999999999998876543         78999999999999999


Q ss_pred             CCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCC
Q 037514          148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS  224 (636)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~  224 (636)
                      +.++.  ..|..+++|++|+|++|++. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus       101 ~~l~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          101 TVLPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCT--TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CccCh--hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            98854  57899999999999999998 5677889999999999999999987777899999999999999998754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.7e-17  Score=179.42  Aligned_cols=189  Identities=25%  Similarity=0.349  Sum_probs=120.1

Q ss_pred             cceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514          362 VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI  441 (636)
Q Consensus       362 L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  441 (636)
                      +..+.++.+.+.+..+.  ..+  +.|+.|++++|.+... + .+..+++|+.|+|++|++.+..+  +..+++|++|+|
T Consensus        23 l~~l~l~~~~i~~~~~~--~~L--~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQ--NEL--NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEECH--HHH--TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccch--hcC--CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34445555555544332  233  5667777777666543 2 35666777777777777664433  666777777777


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSEN  521 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (636)
                      ++|.+.+.+  .+..+++|+.|++++|++.+. +.    +..  +++|+.|+|++|++++.  ..+..+++|+.|+|++|
T Consensus        95 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~~----l~~--l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           95 DENKIKDLS--SLKDLKKLKSLSLEHNGISDI-NG----LVH--LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CSSCCCCCT--TSTTCTTCCEEECTTSCCCCC-GG----GGG--CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             cCCCCCCCh--hhccCCCCCEEEecCCCCCCC-cc----ccC--CCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            777776643  366677777777777776642 21    222  36667777777777643  45677777777777777


Q ss_pred             ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514          522 SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG  573 (636)
Q Consensus       522 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  573 (636)
                      .+.+..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            7775555  67777777777777777664  346777777777777777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=4.6e-18  Score=157.51  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=132.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      ..++++|++|++++|.++ .+| .+..+++|++|++++|.++..+.           +..+++|++|++++|.++..  .
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~-----------l~~l~~L~~L~l~~n~l~~~--~  104 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP-----------ISGLSNLERLRIMGKDVTSD--K  104 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGG-----------GTTCTTCCEEEEECTTCBGG--G
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchh-----------hhcCCCCCEEEeECCccCcc--c
Confidence            356789999999999998 556 69999999999999998876543           88999999999999999874  2


Q ss_pred             hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCc-CCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514          154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN-FNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK  232 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  232 (636)
                      +..++.+++|++|++++|.+++..+..+..+++|++|++++|. +.. +| .+..+++|++|++++|++++ ++  ++..
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~  179 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR--GIED  179 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT--TGGG
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH--Hhcc
Confidence            3478899999999999999998778889999999999999998 665 55 68999999999999999984 44  5788


Q ss_pred             CCCCCEEEcccccCcc
Q 037514          233 MCNLRRLDLAINGFSG  248 (636)
Q Consensus       233 l~~L~~L~L~~n~~~~  248 (636)
                      +++|++|++++|++.+
T Consensus       180 l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSCCEEEECBC----
T ss_pred             CCCCCEEEeeCcccCC
Confidence            9999999999999764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=170.53  Aligned_cols=176  Identities=23%  Similarity=0.204  Sum_probs=97.0

Q ss_pred             ceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccC-CCCCCcEEEccCCcCCcccCCCCCCCCCCCEEEC
Q 037514          363 FKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLC-SLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDI  441 (636)
Q Consensus       363 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  441 (636)
                      +.++++++.+... |..+.    ..++.|++++|++++..+..+. .+++|++|++++|++.+..+..|..+++|++|+|
T Consensus        21 ~~l~c~~~~l~~i-P~~~~----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSC-CSSCC----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCcc-CccCC----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            4566666666543 22221    4466666666666655555555 5666666666666666555555666666666666


Q ss_pred             CCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh---cCCCCCCEEeC
Q 037514          442 GGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL---GNLLCLEYLGL  518 (636)
Q Consensus       442 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L  518 (636)
                      ++|+++.+++..|..+++|++|++++|++++..+..+..     +++|+.|+|++|++++..+..+   ..+++|+.|+|
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-----cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            666666665555666666666666666665444443322     2445666666665553333333   34555555555


Q ss_pred             cCCccCCccChhhhCCCC--CCeEeCcCcccc
Q 037514          519 SENSFLGSLPTSIGNLSH--LRALYLSFNVMS  548 (636)
Q Consensus       519 s~n~~~~~~p~~l~~l~~--L~~L~Ls~n~l~  548 (636)
                      ++|++.+..+..+..++.  ++.|++++|.+.
T Consensus       171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            555555444444555544  255555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.1e-17  Score=162.19  Aligned_cols=156  Identities=19%  Similarity=0.264  Sum_probs=135.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCC
Q 037514           73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTN  152 (636)
Q Consensus        73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  152 (636)
                      .+..+++|++|++++|.++. ++ .++.+++|++|++++|.++++++           +.++++|++|++++|+++.++.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-----------l~~l~~L~~L~L~~N~l~~l~~  102 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-----------LKDLTKLEELSVNRNRLKNLNG  102 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCSSCCEEECCSSCCSCCTT
T ss_pred             chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-----------hccCCCCCEEECCCCccCCcCc
Confidence            56788999999999999984 55 69999999999999999998764           8899999999999999999854


Q ss_pred             hhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCC
Q 037514          153 WLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGK  232 (636)
Q Consensus       153 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  232 (636)
                          +.. ++|++|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+.   ..+..
T Consensus       103 ----~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---~~l~~  170 (263)
T 1xeu_A          103 ----IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---GGLTR  170 (263)
T ss_dssp             ----CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC---TTSTT
T ss_pred             ----ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch---HHhcc
Confidence                333 9999999999999875  3588999999999999999984 4 689999999999999999854   34789


Q ss_pred             CCCCCEEEcccccCccccchh
Q 037514          233 MCNLRRLDLAINGFSGEKEQF  253 (636)
Q Consensus       233 l~~L~~L~L~~n~~~~~~~~~  253 (636)
                      +++|+.|++++|.+.+.....
T Consensus       171 l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          171 LKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             CCCCCEEEEEEEEEECCCEEC
T ss_pred             CCCCCEEeCCCCcccCCcccc
Confidence            999999999999988764433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.4e-17  Score=154.16  Aligned_cols=156  Identities=15%  Similarity=0.295  Sum_probs=124.2

Q ss_pred             cccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCC
Q 037514           97 NIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFP  176 (636)
Q Consensus        97 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  176 (636)
                      ..+.+++|++|++++|.+++++.           +..+++|++|++++|.++..    ..+..+++|++|++++|.+++.
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~l~~-----------l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~  103 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTDLTG-----------IEYAHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSD  103 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSCCTT-----------GGGCTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGG
T ss_pred             ChhhcCCccEEeccCCCccChHH-----------HhcCCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcc
Confidence            34778899999999999987652           78889999999999977665    3688899999999999999887


Q ss_pred             CCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc-CCCCCCCCCCCCCCCCCEEEcccccCccccchhhh
Q 037514          177 QSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ-LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQ  255 (636)
Q Consensus       177 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~  255 (636)
                      .+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +. .+|  ++..+++|++|++++|.+++..     
T Consensus       104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~-----  175 (197)
T 4ezg_A          104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR-----  175 (197)
T ss_dssp             GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT-----
T ss_pred             cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH-----
Confidence            78889999999999999999998788889999999999999998 54 554  3678888888888888776421     


Q ss_pred             ccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCcc
Q 037514          256 TLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKG  299 (636)
Q Consensus       256 ~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  299 (636)
                                              .+..+++|++|++++|++.+
T Consensus       176 ------------------------~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 ------------------------GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ------------------------TGGGCSSCCEEEECBC----
T ss_pred             ------------------------HhccCCCCCEEEeeCcccCC
Confidence                                    23445677888888777653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.8e-17  Score=176.63  Aligned_cols=173  Identities=27%  Similarity=0.318  Sum_probs=106.5

Q ss_pred             cCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCC
Q 037514          357 KTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRL  436 (636)
Q Consensus       357 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  436 (636)
                      ..+++|+.|++++|.+....  .+..+  ++|+.|++++|++.+..+  +..+++|+.|+|++|.+.+ + ..+..+++|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L  111 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYL--PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL  111 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGC--TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccC--CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence            34556666666666665432  24444  666666666666655433  5666667777777766653 2 246666777


Q ss_pred             CEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEE
Q 037514          437 TALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL  516 (636)
Q Consensus       437 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  516 (636)
                      ++|+|++|.+.+..  .+..+++|+.|+|++|++++.  .   .+.  .+++|+.|+|++|.+.+..|  +..+++|+.|
T Consensus       112 ~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~---~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          112 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T---VLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             CEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--G---GGG--SCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--h---hhc--ccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            77777777766642  366667777777777776643  1   122  23666777777777765444  6667777777


Q ss_pred             eCcCCccCCccChhhhCCCCCCeEeCcCcccccc
Q 037514          517 GLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRI  550 (636)
Q Consensus       517 ~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~  550 (636)
                      +|++|.+.+ +| .+..+++|+.|+|++|++.+.
T Consensus       181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            777777664 23 466677777777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.9e-17  Score=158.41  Aligned_cols=167  Identities=23%  Similarity=0.254  Sum_probs=82.2

Q ss_pred             CCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEE
Q 037514          360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTAL  439 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  439 (636)
                      .++..++++++.+.+..  .+..+  ++|++|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l--~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKEL--SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHH--TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHhcCCCccccc--chhhc--CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            34555566666555443  23344  5566666666655432 2 34455555555555555543322  4555555555


Q ss_pred             ECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCc
Q 037514          440 DIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLS  519 (636)
Q Consensus       440 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  519 (636)
                      ++++|++++.++  +.. ++|++|++++|                             ++++ ++ .+..+++|+.|+++
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N-----------------------------~l~~-~~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNN-----------------------------ELRD-TD-SLIHLKNLEILSIR  136 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSS-----------------------------CCSB-SG-GGTTCTTCCEEECT
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCC-----------------------------ccCC-Ch-hhcCcccccEEECC
Confidence            555555554332  111 44444555444                             4442 12 34455555555555


Q ss_pred             CCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          520 ENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       520 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      +|++.+. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.
T Consensus       137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            5555432 2 344555555555555555544  34455555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.4e-19  Score=191.57  Aligned_cols=122  Identities=24%  Similarity=0.320  Sum_probs=75.7

Q ss_pred             CCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCe
Q 037514          460 LHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRA  539 (636)
Q Consensus       460 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  539 (636)
                      |+.|++++|.+++ +|. +..     +++|+.|++++|+++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~-----l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~  512 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQ-----LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE  512 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGG-----GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred             ceEEEecCCCCCC-CcC-ccc-----cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence            5555555555554 232 222     245566666666666 556667777777777777777764 55 5667777777


Q ss_pred             EeCcCccccccc-cccccCCCCCCEEECcCCcceeecCh--hhhcCCCCCCeeeC
Q 037514          540 LYLSFNVMSRII-SENIGQLSEPYMLDLYGNSWEGVITE--KHFRNLSGLDYLTI  591 (636)
Q Consensus       540 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l  591 (636)
                      |++++|++++.. |..+..+++|+.|++++|++++..|.  ..+..+++|+.|++
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            777777777665 66677777777777777777654332  23344667776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.7e-16  Score=144.70  Aligned_cols=108  Identities=29%  Similarity=0.351  Sum_probs=64.5

Q ss_pred             cccEEEcccCcCCCCCch-hhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514          488 TLETLDLASNKLGGNLPD-SLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL  566 (636)
Q Consensus       488 ~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  566 (636)
                      ++++|++++|++++..+. .+..+++|++|+|++|++.+..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            345555555555543332 3556666666666666666555666666666666666666666666666666666666666


Q ss_pred             cCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          567 YGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       567 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      ++|++++..|. .|..+++|++|++++|++
T Consensus       110 ~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          110 YDNQISCVMPG-SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred             CCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence            66666654343 355666666666666633

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.1e-16  Score=144.25  Aligned_cols=138  Identities=25%  Similarity=0.355  Sum_probs=108.8

Q ss_pred             CeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeE
Q 037514          461 HSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRAL  540 (636)
Q Consensus       461 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L  540 (636)
                      +.+++++|.++. +|..+       .++|++|++++|+++ .+|..+.++++|+.|+|++|.+++..+..|.++++|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~-------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI-------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC-------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCCc-CCCCC-------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence            456666666653 23211       145688888888887 667788889999999999999988777888999999999


Q ss_pred             eCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514          541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF  610 (636)
Q Consensus       541 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  610 (636)
                      ++++|++++..+..|..+++|++|++++|++. .+|.+.|..+++|+.|++++|  ...|+|...|+..|
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N--~~~C~c~l~~l~~~  150 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN--PLYCDCNMQWLSDW  150 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSS--CEECSGGGHHHHHH
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCC--CeecCCcCHHHHHH
Confidence            99999999888888999999999999999988 577777888999999999999  55566666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.1e-17  Score=168.33  Aligned_cols=102  Identities=16%  Similarity=0.091  Sum_probs=63.9

Q ss_pred             CCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCc-EEEccCCcCCcccCCCCCCCCCCC
Q 037514          359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY-WLRLGGNNLSGELSTSLPDCSRLT  437 (636)
Q Consensus       359 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~  437 (636)
                      +++|+.+++++|.++...+.+|.++  .+|+++++.+| +......+|..+++|+ .+++.+ .++...+.+|.+|++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~--~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQK--KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCC--CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            5666666666666665555556555  56666666665 5555555666666666 666666 55544556666666666


Q ss_pred             EEECCCCCCCCCcchhhcCCCCCCeEe
Q 037514          438 ALDIGGNRFLQLPSTSMGNLCNLHSLD  464 (636)
Q Consensus       438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~  464 (636)
                      +++++.|.++.+.+.+|.++++|+.++
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhc
Confidence            666666666666666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.9e-16  Score=159.45  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=114.2

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCC----CCCCcchhhcCCCCCC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNR----FLQLPSTSMGNLCNLH  461 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~  461 (636)
                      ++|+.+++.+ .++.....+|..+++|+.+++.+|.+....+.+|.++.++.++....+.    ...+...+|..+..|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            5566666655 5555455555566666666666665554455555555555555544421    1222222333333333


Q ss_pred             -eEeCcCCcCCCchhhhHHh------------------------hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEE
Q 037514          462 -SLDISYNHITGEIKELTNA------------------------FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYL  516 (636)
Q Consensus       462 -~L~l~~n~l~~~~~~~~~~------------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  516 (636)
                       .+.+...   +.++..+..                        +.. .+++|+++++++|+++...+.+|.+|++|+.+
T Consensus       180 ~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~-~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          180 TTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRD-YMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHH-HCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             eeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHH-hcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence             2222211   111111110                        000 13667777777777775555667777777777


Q ss_pred             eCcCCccCCccChhhhCCCCCC-eEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeee
Q 037514          517 GLSENSFLGSLPTSIGNLSHLR-ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLT  590 (636)
Q Consensus       517 ~Ls~n~~~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  590 (636)
                      ++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++. .++..+|.++++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            77776 5555566777777777 777776 666666777777777777777777776 46777777777777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2.4e-18  Score=184.93  Aligned_cols=202  Identities=17%  Similarity=0.078  Sum_probs=133.8

Q ss_pred             CCCccEEEccCCCCCcCCChhhcCCCCcceecccccc-------------CCCcchhhHHhhcCCCccEEE-CccCcCCc
Q 037514          335 PFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA-------------ISDTIPDWFWGVISQKLSVID-LSNNKFFG  400 (636)
Q Consensus       335 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~-------------~~~~~~~~~~~~~~~~L~~L~-ls~n~l~~  400 (636)
                      .+.|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+  ++|+.|+ ++.|.+  
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYL--  422 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHH--
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhccc--
Confidence            345555555555554 456667777777777765554             344455555555  5555555 444432  


Q ss_pred             cCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514          401 GILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA  480 (636)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  480 (636)
                               ..|+.+.+.+|.+....+      ..|++|++++|.+++++.  ++.+++|+.|++++|+++ .+|..+..
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhc
Confidence                     123333444444442211      247788888888887543  778888888888888887 55554443


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCcc-ChhhhCCCCCCeEeCcCccccccccc---ccc
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSL-PTSIGNLSHLRALYLSFNVMSRIISE---NIG  556 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~  556 (636)
                           +++|+.|+|++|++++ +| .++.+++|+.|+|++|++.+.. |..+..+++|+.|++++|++++.+|.   .+.
T Consensus       485 -----l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~  557 (567)
T 1dce_A          485 -----LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE  557 (567)
T ss_dssp             -----CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred             -----CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence                 3667888888888885 56 7888888888888888888766 88888888888888888888876553   234


Q ss_pred             CCCCCCEEEC
Q 037514          557 QLSEPYMLDL  566 (636)
Q Consensus       557 ~l~~L~~L~L  566 (636)
                      .+++|+.|++
T Consensus       558 ~lp~L~~L~l  567 (567)
T 1dce_A          558 MLPSVSSILT  567 (567)
T ss_dssp             HCTTCSEEEC
T ss_pred             HCcccCccCC
Confidence            5788888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=4.7e-16  Score=139.97  Aligned_cols=135  Identities=20%  Similarity=0.216  Sum_probs=112.6

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514           78 KKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV  156 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  156 (636)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.++++..           +..+++|++|++++|.++..  ++..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~Ls~N~l~~~--~~~~   90 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----------LPKLPKLKKLELSENRIFGG--LDML   90 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSS-----------CCCCSSCCEEEEESCCCCSC--CCHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhh-----------hccCCCCCEEECcCCcCchH--HHHH
Confidence            68999999999998 7888889999999999999999987621           88899999999999999885  2356


Q ss_pred             hCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCC---ccccCCCCCCEEeCcCCcCCCCCC
Q 037514          157 VNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIP---QWLFNISTLVTLNLRSSQLSGSIP  226 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p  226 (636)
                      +..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence            7778999999999999887533 678888999999999998887544   47788888999998888876 444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.7e-15  Score=139.32  Aligned_cols=130  Identities=24%  Similarity=0.297  Sum_probs=67.7

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      ++++++++++. .+|..+..  +|++|++++|.+++++..                                  ..++.+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~----------------------------------~~~~~l   53 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSD----------------------------------GLFGRL   53 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCS----------------------------------CSGGGC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCc----------------------------------cccccC
Confidence            56777777775 45554433  677777777766655431                                  123444


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD  240 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  240 (636)
                      ++|++|+|++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..|. .+..+++|++|+
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~  132 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLN  132 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEE
Confidence            4444444444444444444455555555555555555544444445555555555555555433332 244555555555


Q ss_pred             cccccCcc
Q 037514          241 LAINGFSG  248 (636)
Q Consensus       241 L~~n~~~~  248 (636)
                      +++|.+.+
T Consensus       133 L~~N~l~c  140 (192)
T 1w8a_A          133 LASNPFNC  140 (192)
T ss_dssp             CTTCCBCC
T ss_pred             eCCCCccC
Confidence            55555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=2.1e-16  Score=175.32  Aligned_cols=192  Identities=22%  Similarity=0.229  Sum_probs=113.6

Q ss_pred             EEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccC
Q 037514          340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG  419 (636)
Q Consensus       340 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  419 (636)
                      .+++..+.+. ..+..+..+..|+.|+|++|.+.. +|..+..+  ++|++|+|++|.++ .+|..+..+++|++|+|++
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l--~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKY--DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH  279 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSC-CCGGGGGC--CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCC--CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence            3344444443 456677888888888888888874 44444455  88999999999887 6778888899999999999


Q ss_pred             CcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514          420 NNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKL  499 (636)
Q Consensus       420 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  499 (636)
                      |.++ .+|..+..+++|++|+|++|.++.++. .|+.+++|++|+|++|++++.+|..+.....    .+..+++++|.+
T Consensus       280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l  353 (727)
T 4b8c_D          280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDNRP  353 (727)
T ss_dssp             SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCC
T ss_pred             CcCC-ccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccCcc
Confidence            9988 678888999999999999999986654 4889999999999999999888887755432    123478889998


Q ss_pred             CCCCchhhcCCCCCCEEeCcCC--------ccCCccChhhhCCCCCCeEeCcCcccc
Q 037514          500 GGNLPDSLGNLLCLEYLGLSEN--------SFLGSLPTSIGNLSHLRALYLSFNVMS  548 (636)
Q Consensus       500 ~~~~~~~l~~l~~L~~L~Ls~n--------~~~~~~p~~l~~l~~L~~L~Ls~n~l~  548 (636)
                      ++.+|.      .|+.|++++|        .+.+..+..+.++..++...+++|.+.
T Consensus       354 ~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          354 EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CCCCCC------C-----------------------------------------CCC
T ss_pred             cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            877775      4556667766        233333344455666666777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=9e-16  Score=135.07  Aligned_cols=128  Identities=20%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhh
Q 037514           78 KKLKLLDLSESSFS-GMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQV  156 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  156 (636)
                      +++++|++++|.++ +.+|..+..+++|++|++++|.++++..           +..+++|++|++++|.++..  ++..
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~Ls~n~i~~~--~~~~   83 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----------LPKLNKLKKLELSDNRVSGG--LEVL   83 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTT-----------CCCCTTCCEEECCSSCCCSC--THHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchh-----------hhcCCCCCEEECCCCcccch--HHHH
Confidence            68999999999998 7888889999999999999999987621           88899999999999999885  3456


Q ss_pred             hCCCCCCCEEEccCCcCCCC-CCcCccCCCCCCEEEccCCcCCcCCC---ccccCCCCCCEEeCcC
Q 037514          157 VNELPSLVELHLSNCQLNFP-QSLPFLNFTSLSILELSYDNFNSQIP---QWLFNISTLVTLNLRS  218 (636)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p---~~l~~l~~L~~L~L~~  218 (636)
                      +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            77788999999999988764 33678888888888888888887544   4677888888888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=7.5e-16  Score=170.88  Aligned_cols=195  Identities=17%  Similarity=0.141  Sum_probs=117.7

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      +.++.|+|.++.+.. .+..+     |+.++|+.|.|.+..............+..+++|++|+|++|.+..++.   .+
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~---~~  243 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA---NI  243 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCG---GG
T ss_pred             CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh---hh
Confidence            678999999998875 34333     4445555555444321100000001127889999999999999997753   55


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                      ..+++|++|+|++|.++ .+|..|.++++|++|+|++|.++. +|..|+++++|++|+|++|.+. .+|.. ++++++|+
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~  319 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQ  319 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCC
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCcc
Confidence            68999999999999999 678889999999999999999994 7999999999999999999997 77753 89999999


Q ss_pred             EEEcccccCccccchhhhccccCCcccc--hhhccCcCcccccccccCCCCCCEEEccCC
Q 037514          238 RLDLAINGFSGEKEQFIQTLSGCNNSTL--ETLETQRMNGTISENIGQLAELVALNLYRN  295 (636)
Q Consensus       238 ~L~L~~n~~~~~~~~~l~~l~~~~~~~L--~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n  295 (636)
                      +|+|++|.+++.+|..+..+.    ...  -.|..|.+++.+|..      |+.|+++.|
T Consensus       320 ~L~L~~N~l~~~~p~~~~~~~----~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKILTEKS----VTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             CEECTTSCCCSHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             EEeCCCCccCCCChHHHhhcc----hhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            999999999999888876543    011  224488888888764      445566655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.9e-15  Score=133.95  Aligned_cols=106  Identities=30%  Similarity=0.327  Sum_probs=61.0

Q ss_pred             cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc-ccccCCCCCCEEEC
Q 037514          488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS-ENIGQLSEPYMLDL  566 (636)
Q Consensus       488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  566 (636)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            345555555555533  445556666666666666655555555556666666666666655422 45566666666666


Q ss_pred             cCCcceeecCh---hhhcCCCCCCeeeCCCCCC
Q 037514          567 YGNSWEGVITE---KHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       567 ~~n~l~~~~~~---~~~~~l~~L~~L~ls~n~~  596 (636)
                      ++|++++ +|.   ..+..+++|++|++++|..
T Consensus       128 ~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          128 FNCEVTN-LNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CSSGGGT-STTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eCCcCcc-hHHHHHHHHHhCccCcEecCCCCCh
Confidence            6666653 333   3456666666666666644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=133.83  Aligned_cols=92  Identities=23%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .|..+++|++|+|++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~  127 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA  127 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTT
T ss_pred             HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcc
Confidence            4455555555555555555555555556666666666666666555555666666666666666665 344333556666


Q ss_pred             CCEEEcccccCcc
Q 037514          236 LRRLDLAINGFSG  248 (636)
Q Consensus       236 L~~L~L~~n~~~~  248 (636)
                      |+.|++++|.+..
T Consensus       128 L~~L~L~~N~~~C  140 (193)
T 2wfh_A          128 LSHLAIGANPLYC  140 (193)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             ccEEEeCCCCeec
Confidence            6666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=8.7e-15  Score=128.74  Aligned_cols=127  Identities=20%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             CCCcEEEccCCcCC-cccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCc
Q 037514          410 PSLYWLRLGGNNLS-GELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVST  488 (636)
Q Consensus       410 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  488 (636)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+     ++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC-----PN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-----TT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC-----CC
Confidence            45666666666665 45555556666666666666666655  345566666666666666655444433322     44


Q ss_pred             ccEEEcccCcCCCC-CchhhcCCCCCCEEeCcCCccCCccC---hhhhCCCCCCeEeCc
Q 037514          489 LETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSFLGSLP---TSIGNLSHLRALYLS  543 (636)
Q Consensus       489 L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p---~~l~~l~~L~~L~Ls  543 (636)
                      |++|++++|++++. .+..+..+++|++|++++|++.+..+   ..+..+++|++|+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            46666666665532 22455666666666666666664444   355666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=2.9e-14  Score=129.35  Aligned_cols=95  Identities=25%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~  125 (177)
T 2o6r_A           47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS  125 (177)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT
T ss_pred             HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcc
Confidence            3455555666666666555555555566666666666666666654555566666666666666666 344333566667


Q ss_pred             CCEEEcccccCccccc
Q 037514          236 LRRLDLAINGFSGEKE  251 (636)
Q Consensus       236 L~~L~L~~n~~~~~~~  251 (636)
                      |++|++++|.+.+..+
T Consensus       126 L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          126 LQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             cCEEEecCCCeeccCc
Confidence            7777777777665443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=8e-14  Score=143.15  Aligned_cols=268  Identities=13%  Similarity=0.085  Sum_probs=166.5

Q ss_pred             CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514          285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK  364 (636)
Q Consensus       285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  364 (636)
                      ..++.+.+..+ ++. ++..+|.++ +|+.+.+..+   ........|.. .+|+.+.+.+ .+....+.+|.+|.+|+.
T Consensus       113 ~~l~~i~ip~~-i~~-I~~~aF~~~-~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIILPNS-VKS-IPKDAFRNS-QIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEECCTT-CCE-ECTTTTTTC-CCSEEECCTT---CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             CCccEEEECCc-cCE-ehHhhcccC-CccEEEeCCC---ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            55666666543 333 555577764 6777777654   22222333333 3566666664 444455566666777777


Q ss_pred             eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC
Q 037514          365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN  444 (636)
Q Consensus       365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  444 (636)
                      +++.+|.+......+|. .  .+|+.+.+.++ +.......|..+++|+.+++.++ ++.....+|.+ .+|+.+.+ .+
T Consensus       185 l~l~~n~l~~I~~~aF~-~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~  257 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-Y--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN  257 (401)
T ss_dssp             EECTTSCCSEECTTTTT-T--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred             eecCCCcceEechhhEe-e--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence            77766666655555554 2  56666666533 44444555666666666666553 33333444554 45666665 33


Q ss_pred             CCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccC
Q 037514          445 RFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL  524 (636)
Q Consensus       445 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~  524 (636)
                      .++.+...+|.+|++|+.+++.+|.+..                        +......+.+|.+|++|+.+++.+ .+.
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFND------------------------DPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCC------------------------CTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccC------------------------CcccEECHHHhhCCccCCeEEeCC-ceE
Confidence            4555555555555555555555544320                        111124456788889999999984 466


Q ss_pred             CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCC-CCCeeeCCCCC
Q 037514          525 GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLS-GLDYLTISSSN  595 (636)
Q Consensus       525 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~ls~n~  595 (636)
                      .....+|.++++|+.+++..+ ++.+...+|.++ +|+.+++++|... .++.+.|..++ .++.+++..+.
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence            566678888999999999654 777777888888 9999999999877 46777788774 78888888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=6.1e-14  Score=127.23  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=114.5

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514           80 LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE  159 (636)
Q Consensus        80 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  159 (636)
                      .+.+++++++++ .+|..+  .++|++|++++|.+++++...         +.++++|++|++++|.++.++.  ..+..
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~--~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGV---------FDKLTQLTKLSLSQNQIQSLPD--GVFDK   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHH---------hcCcccccEEECCCCcceEeCh--hHccC
Confidence            478999999988 455444  379999999999998876542         7899999999999999998854  56899


Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCC
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGS  224 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~  224 (636)
                      +++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999999999999998888899999999999999999986666678899999999999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.3e-13  Score=141.48  Aligned_cols=230  Identities=12%  Similarity=0.101  Sum_probs=179.1

Q ss_pred             CCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCC
Q 037514          351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSL  430 (636)
Q Consensus       351 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  430 (636)
                      .-..+|.++ +|+.+.+..+ +......+|.+   .+|+.+.+.+ .+.......|..+++|+.+++.+|+++.....+|
T Consensus       127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~---~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF  200 (401)
T 4fdw_A          127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN---STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF  200 (401)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT---CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred             ehHhhcccC-CccEEEeCCC-ccEECHHhcCC---CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence            334455554 5777777655 55555566665   3688888876 5666667788999999999999998886556666


Q ss_pred             CCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCC
Q 037514          431 PDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNL  510 (636)
Q Consensus       431 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  510 (636)
                      . +.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++......+..      .+|+.+.+ .+.++.....+|.+|
T Consensus       201 ~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~l-p~~i~~I~~~aF~~c  270 (401)
T 4fdw_A          201 V-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVKL-PNGVTNIASRAFYYC  270 (401)
T ss_dssp             T-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEEE-ETTCCEECTTTTTTC
T ss_pred             e-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEEe-CCCccEEChhHhhCC
Confidence            6 689999999854 88888888999999999999875 44333333322      56799999 455765667889999


Q ss_pred             CCCCEEeCcCCccC-----CccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCC
Q 037514          511 LCLEYLGLSENSFL-----GSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSG  585 (636)
Q Consensus       511 ~~L~~L~Ls~n~~~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  585 (636)
                      ++|+.+++.+|.+.     ...+.+|.++++|+.+++. +.++.+....|.++++|+.+++..+ ++ .++..+|.++ +
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~  346 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-G  346 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-C
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-C
Confidence            99999999998764     3556789999999999999 5688888899999999999999665 55 6888899999 9


Q ss_pred             CCeeeCCCCCCCccc
Q 037514          586 LDYLTISSSNSSLVF  600 (636)
Q Consensus       586 L~~L~ls~n~~~~~~  600 (636)
                      |+.+++++|..+...
T Consensus       347 L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVF  361 (401)
T ss_dssp             CCEEEECCSSCCBCC
T ss_pred             CCEEEEcCCCCcccc
Confidence            999999999766544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=2.1e-13  Score=140.65  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             hhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCC
Q 037514          354 SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC  433 (636)
Q Consensus       354 ~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  433 (636)
                      ..+..+..++.+......+.   ...|...  .+|+.+.+.++ +......+|..+.+|+.+++..+ ++.....+|.+|
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~--~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c  342 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP---EKTFYGC--SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC  342 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC---TTTTTTC--TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred             cccccccccceeccCceeec---ccccccc--ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence            34455555555554443221   2234444  66777777554 44445567778888888888644 555556788888


Q ss_pred             CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCC
Q 037514          434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN  468 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  468 (636)
                      .+|+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus       343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88888888766 77777778888888888888654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.6e-14  Score=130.83  Aligned_cols=132  Identities=17%  Similarity=0.275  Sum_probs=80.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCC
Q 037514           73 FVYSLKKLKLLDLSESSFSGMLPPNIGNLS-NLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVT  151 (636)
Q Consensus        73 ~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  151 (636)
                      .+.++++|++|++++|.++. +|. +..+. +|++|++++|.+++++.           +..+++|++|++++|.++.++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~~-----------l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLDG-----------FPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEECC-----------CCCCSSCCEEECCSSCCCEEC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcccc-----------cccCCCCCEEECCCCcccccC
Confidence            35566788888888888874 344 55544 88888888888876521           667777777777777776653


Q ss_pred             ChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCcc----ccCCCCCCEEeCcCCc
Q 037514          152 NWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQW----LFNISTLVTLNLRSSQ  220 (636)
Q Consensus       152 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~L~~n~  220 (636)
                      .  ..+..+++|++|++++|.+....+ ..+..+++|++|++++|.++. +|..    +..+++|++|++++|.
T Consensus        81 ~--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           81 E--GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             S--CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             c--chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            2  234566666666666666643221 145555566666666655554 3332    4455555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=4.1e-13  Score=138.50  Aligned_cols=147  Identities=12%  Similarity=0.147  Sum_probs=90.1

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh
Q 037514          428 TSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL  507 (636)
Q Consensus       428 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  507 (636)
                      ..+.++..++.+.+..+. ..+....|..+..++.+......+..   .     ....+.+|+.+.+.++ ++.....+|
T Consensus       247 ~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~-----~F~~~~~L~~i~l~~~-i~~I~~~aF  316 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---K-----TFYGCSSLTEVKLLDS-VKFIGEEAF  316 (394)
T ss_dssp             STTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT---T-----TTTTCTTCCEEEECTT-CCEECTTTT
T ss_pred             ccccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc---c-----cccccccccccccccc-cceechhhh
Confidence            445555555555554442 22333345555555555554432211   1     1112355666666543 443445678


Q ss_pred             cCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCC
Q 037514          508 GNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLD  587 (636)
Q Consensus       508 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  587 (636)
                      .++++|+.++|.++ +......+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+. ..|.++++|+
T Consensus       317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~-~~F~~c~~L~  391 (394)
T 4fs7_A          317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR-YDFEDTTKFK  391 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG-GGBCTTCEEE
T ss_pred             cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh-heecCCCCCc
Confidence            88888888888754 55455667888888998888766 76777788888889998888765 22 232 4588888777


Q ss_pred             ee
Q 037514          588 YL  589 (636)
Q Consensus       588 ~L  589 (636)
                      .+
T Consensus       392 ~I  393 (394)
T 4fs7_A          392 WI  393 (394)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.1e-14  Score=132.05  Aligned_cols=136  Identities=15%  Similarity=0.080  Sum_probs=112.9

Q ss_pred             ccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCC-CCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCC
Q 037514           96 PNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS-SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN  174 (636)
Q Consensus        96 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  174 (636)
                      ..+.++.+|++|++++|.++.++.           +..+. +|++|++++|.++++    ..+..+++|++|++++|.++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~-----------~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIEN-----------LGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCC-----------GGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHH-----------hhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCccc
Confidence            347788999999999999987642           44444 999999999999886    36888999999999999998


Q ss_pred             CCCCcCccCCCCCCEEEccCCcCCcCCCc--cccCCCCCCEEeCcCCcCCCCCCCC---CCCCCCCCCEEEcccccCcc
Q 037514          175 FPQSLPFLNFTSLSILELSYDNFNSQIPQ--WLFNISTLVTLNLRSSQLSGSIPKF---PPGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       175 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~---~~~~l~~L~~L~L~~n~~~~  248 (636)
                      +..+..+..+++|++|++++|.+.. +|.  .+..+++|++|++++|.+. .+|..   .+..+++|+.|+++.|....
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7766667899999999999999976 565  7889999999999999998 55543   26788999999999887653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.7e-13  Score=123.10  Aligned_cols=105  Identities=21%  Similarity=0.259  Sum_probs=68.7

Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      +++++++|+++ .+|..+.  ++|+.|+|++|.+.+..|..|.++++|++|++++|+++++.+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            56666666666 3454442  56677777777776666666666777777777777777666666666777777777777


Q ss_pred             cceeecChhhhcCCCCCCeeeCCCCCCCc
Q 037514          570 SWEGVITEKHFRNLSGLDYLTISSSNSSL  598 (636)
Q Consensus       570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~  598 (636)
                      ++.+ +|.+.|..+++|++|++++|++..
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7663 555556667777777777774443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=6.9e-13  Score=119.50  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=76.0

Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|++.+..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777775 5555443  67777777777777666777777777777777777777766666777777777777777


Q ss_pred             cceeecChhhhcCCCCCCeeeCCCCCCCccc
Q 037514          570 SWEGVITEKHFRNLSGLDYLTISSSNSSLVF  600 (636)
Q Consensus       570 ~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  600 (636)
                      ++. .+|.+.|..+++|++|++++|++...+
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCccccc
Confidence            777 466666777777777777777554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.8e-15  Score=138.78  Aligned_cols=98  Identities=27%  Similarity=0.269  Sum_probs=40.3

Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCcccccccc-ccccCCCCCCEEECcC
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIIS-ENIGQLSEPYMLDLYG  568 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~  568 (636)
                      ++|++++|.++ .+|..+..+++|+.|++++|++.+ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus        73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence            34444444333 233333333444444444444432 22 23444444444444444443221 2344444444444444


Q ss_pred             CcceeecCh---------hhhcCCCCCCeee
Q 037514          569 NSWEGVITE---------KHFRNLSGLDYLT  590 (636)
Q Consensus       569 n~l~~~~~~---------~~~~~l~~L~~L~  590 (636)
                      |++.+.+|.         ..+..+++|+.||
T Consensus       150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            444333221         2345555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=6.6e-15  Score=136.29  Aligned_cols=154  Identities=23%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             CCCCCCcEEEccCCcCCcccCC------CCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHh
Q 037514          407 CSLPSLYWLRLGGNNLSGELST------SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA  480 (636)
Q Consensus       407 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  480 (636)
                      .....++.++++++.+.+..|.      .+..+++|++|++++|.+++++  .+..+++|++|++++|+++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3345666667777777666665      7888999999999999998865  6888999999999999998 45555544


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccC-hhhhCCCCCCeEeCcCccccccccc------
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLP-TSIGNLSHLRALYLSFNVMSRIISE------  553 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~------  553 (636)
                      +     ++|++|++++|++++ +| .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|.      
T Consensus        92 ~-----~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           92 A-----DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             H-----HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             C-----CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            4     456999999999985 45 68889999999999999985332 4788999999999999999887654      


Q ss_pred             ----cccCCCCCCEEECcCCcce
Q 037514          554 ----NIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       554 ----~~~~l~~L~~L~L~~n~l~  572 (636)
                          .+..+++|+.||  +|+++
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHhCCCcEEEC--CcccC
Confidence                378899999987  66655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=3.4e-12  Score=114.53  Aligned_cols=105  Identities=23%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514           80 LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE  159 (636)
Q Consensus        80 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  159 (636)
                      .+++++++|.++ .+|..+.  ++|++|++++|.|+++++..         |.++++|++|++++|+++.++.  ..|.+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~--~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGV---------FDRLTQLTRLDLDNNQLTVLPA--GVFDK   76 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhh---------hcCcccCCEEECCCCCcCccCh--hhccC
Confidence            356777777776 3555442  66777777777766654321         4455555555555555554432  33444


Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCC
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFN  198 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~  198 (636)
                      +++|++|+|++|++++..+..|.++++|++|++++|.+.
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            455555555555544444444444444444444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=3.8e-12  Score=114.64  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      +.++++++++. .+|..+.  ++|++|++++|.|+++++..         +.++++|++|+|++|+++.++.  ..|.++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~~i~~--~~~~~l   80 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGV---------FDHLVNLQQLYFNSNKLTAIPT--GVFDKL   80 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHH---------hcCCcCCCEEECCCCCCCccCh--hHhCCc
Confidence            56777777765 4555443  66777777777766654321         4455555555555555555432  234455


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS  199 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  199 (636)
                      ++|++|+|++|++.+..+..|..+++|++|++++|.+..
T Consensus        81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            555555555555554444445555555555555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.5e-13  Score=139.64  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             CCccEEECccCcCCccCCcccC-----CCCCCcEEEccCCcCCcccCCCC-CCCCCCCEEECCCCCCCCCcchhh-----
Q 037514          386 QKLSVIDLSNNKFFGGILSSLC-----SLPSLYWLRLGGNNLSGELSTSL-PDCSRLTALDIGGNRFLQLPSTSM-----  454 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----  454 (636)
                      +.|++|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            6677788877777543322221     12456666666665542211111 122344555555555443322222     


Q ss_pred             cCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCc----cChh
Q 037514          455 GNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGS----LPTS  530 (636)
Q Consensus       455 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~  530 (636)
                      ...++|++|++++|.++......                         ++..+..+++|++|+|++|.+...    ++..
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~-------------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAV-------------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHH-------------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHH-------------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            12344444444444443222111                         222334445555555555554321    1333


Q ss_pred             hhCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcce
Q 037514          531 IGNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       531 l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      +...++|++|+|++|.+++.    +...+...++|++|+|++|++.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            44445555555555555432    2223334455555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.30  E-value=2e-10  Score=118.37  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ..|+.+.+. +.++......|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            445555553 2233334456677777777777654 44445567777888888887544 66677777888888888887


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcC
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKL  499 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  499 (636)
                      .++...      ...+.  ...+|+.+.+..+.+
T Consensus       365 ~~~~~~------~~~~~--~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          365 SGSRSQ------WNAIS--TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             SSCHHH------HHTCB--CCCCC----------
T ss_pred             CCceee------hhhhh--ccCCCCEEEeCCCCE
Confidence            766421      12222  235667777665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=9.5e-13  Score=133.80  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             CCCCEEECCCCCCCCCcchhhc-----CCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhh-
Q 037514          434 SRLTALDIGGNRFLQLPSTSMG-----NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSL-  507 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-  507 (636)
                      +.|++|++++|.++......+.     ..++|++|++++|.+++.....+...    +++|++|+|++|.++......+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV----FLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH----HHTEEEEECCSSCCCHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH----HHhccHhhcCCCCCCHHHHHHHH
Confidence            3556666666666543322222     22577777777777764333322211    1356888888888874433333 


Q ss_pred             ----cCCCCCCEEeCcCCccCC----ccChhhhCCCCCCeEeCcCccccccc----cccccCCCCCCEEECcCCcceeec
Q 037514          508 ----GNLLCLEYLGLSENSFLG----SLPTSIGNLSHLRALYLSFNVMSRII----SENIGQLSEPYMLDLYGNSWEGVI  575 (636)
Q Consensus       508 ----~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~  575 (636)
                          ...++|+.|+|++|.+..    .++..+...++|++|+|++|.+++..    ...+...++|++|+|++|.+++..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence                346789999999998864    34555678899999999999998643    566778889999999999987532


Q ss_pred             Ch---hhhcCCCCCCeeeCCCCCCC
Q 037514          576 TE---KHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       576 ~~---~~~~~l~~L~~L~ls~n~~~  597 (636)
                      ..   ..+...++|++|++++|.+.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCC
Confidence            22   23456799999999999775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=7.5e-12  Score=126.79  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             EEEcccC-cCCCCCchhhcCCCCCCEEeCcC-CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcC
Q 037514          491 TLDLASN-KLGGNLPDSLGNLLCLEYLGLSE-NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYG  568 (636)
Q Consensus       491 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  568 (636)
                      .++.+++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 555 3555 66666666666664 666655555666666666666666666666666666666666666666


Q ss_pred             CcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          569 NSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       569 n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      |++. .+|...|..++ |+.|++++|.+
T Consensus        90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred             Cccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence            6665 35555555444 66666666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=8.2e-10  Score=113.70  Aligned_cols=334  Identities=11%  Similarity=0.127  Sum_probs=162.7

Q ss_pred             CCCCCcCccCCC-CCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCc---CCCCCCCCCCCCCCCCCEEEcccccCccc
Q 037514          174 NFPQSLPFLNFT-SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ---LSGSIPKFPPGKMCNLRRLDLAINGFSGE  249 (636)
Q Consensus       174 ~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~~l~~L~~L~L~~n~~~~~  249 (636)
                      +.+...+|.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|.   ++ .++...|..+.+|+.+.+..+ +.. 
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~-  127 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE-  127 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE-
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce-
Confidence            334456677764 5888888643 555556677788888888776653   33 344445666666665544322 111 


Q ss_pred             cchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecC
Q 037514          250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMR  329 (636)
Q Consensus       250 ~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~  329 (636)
                                                .-...+..+.+|+.+.+..+. . .+....|..+..|+.+.+..+   .. .+.
T Consensus       128 --------------------------I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~---~~-~I~  175 (394)
T 4gt6_A          128 --------------------------IDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS---VT-AIE  175 (394)
T ss_dssp             --------------------------ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT---CC-EEC
T ss_pred             --------------------------ehhhhhhhhccccccccccee-e-eecccceecccccccccccce---ee-Eec
Confidence                                      112345566778888876542 2 255557888888888887654   11 122


Q ss_pred             CCCCCCCCccEEEccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCC
Q 037514          330 SDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL  409 (636)
Q Consensus       330 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  409 (636)
                      ........|+.+.+.... ......++..+..++............. ..+            ...+.........+...
T Consensus       176 ~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~  241 (394)
T 4gt6_A          176 ERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAID-NVL------------YEKSANGDYALIRYPSQ  241 (394)
T ss_dssp             TTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSS-SCE------------EEECTTSCEEEEECCTT
T ss_pred             cccccccceeEEEECCcc-cccccchhhhccccceeccccccccccc-cee------------ecccccccccccccccc
Confidence            222233456666665432 2233344555555555544333221110 000            00000000000011112


Q ss_pred             CCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcc
Q 037514          410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTL  489 (636)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L  489 (636)
                      ..+..+.+.. .++.....+|.++..|+.+.+..+ +..+...+|.++++|+.+.+.                       
T Consensus       242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-----------------------  296 (394)
T 4gt6_A          242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-----------------------  296 (394)
T ss_dssp             CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-----------------------
T ss_pred             cccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-----------------------
Confidence            2233333322 122223345555566666655433 222333445555555555443                       


Q ss_pred             cEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          490 ETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       490 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                             +.++.....+|.+|.+|+.++|..+ +......+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus       297 -------~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          297 -------SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             -------TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             -------CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence                   1222233345666666666666654 44334456666777777776533 55555566777777777777666


Q ss_pred             cceeecChhhhcCCCCCCeeeCCCCC
Q 037514          570 SWEGVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       570 ~l~~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      ....    ..|..+.+|+.+.+..+.
T Consensus       368 ~~~~----~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          368 RSQW----NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             HHHH----HTCBCCCCC---------
T ss_pred             eeeh----hhhhccCCCCEEEeCCCC
Confidence            4321    235566677777766553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=4.9e-10  Score=113.32  Aligned_cols=103  Identities=22%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             EEeCCCC-CCCCCCCccccCCCCCCEEeCcC-CCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514           82 LLDLSES-SFSGMLPPNIGNLSNLQYLDLSY-QNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE  159 (636)
Q Consensus        82 ~L~Ls~~-~i~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  159 (636)
                      .++.+++ +++ .+|. |..+++|++|+|++ |.+++++...         |.++++|++|+|++|.+++++.  ..|.+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~~~~--~~~~~   78 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKSGLRFVAP--DAFHF   78 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSSCCCEECT--TGGGS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhH---------hccccCCCEEECCCCccceeCH--HHhcC
Confidence            4577776 676 4666 77777778888875 7777665432         5555555555555555555422  34555


Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCC
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFN  198 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~  198 (636)
                      +++|++|+|++|++++..+..|..++ |++|++.+|.+.
T Consensus        79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55555555555555544444444333 555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.03  E-value=3.2e-08  Score=101.20  Aligned_cols=80  Identities=9%  Similarity=0.101  Sum_probs=44.3

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ..|+.+.+..+ +.......|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            34444444332 22233345556666666666666555444556666666666666543 55555556666666666666


Q ss_pred             cC
Q 037514          466 SY  467 (636)
Q Consensus       466 ~~  467 (636)
                      ..
T Consensus       341 p~  342 (379)
T 4h09_A          341 PK  342 (379)
T ss_dssp             CT
T ss_pred             CC
Confidence            44

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.96  E-value=5.8e-08  Score=99.29  Aligned_cols=103  Identities=13%  Similarity=0.082  Sum_probs=54.5

Q ss_pred             CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514          487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL  566 (636)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  566 (636)
                      ..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.+....|.++.+|+.+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            44455555433 33233344555556666655443 33233345555666666666555555555556666666666666


Q ss_pred             cCCcceeecChhhhcCCCCCCeeeCCC
Q 037514          567 YGNSWEGVITEKHFRNLSGLDYLTISS  593 (636)
Q Consensus       567 ~~n~l~~~~~~~~~~~l~~L~~L~ls~  593 (636)
                      ..+ ++ .|++.+|.++++|+.+.+..
T Consensus       318 p~~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          318 PTA-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             Ccc-cc-EEHHHHhhCCCCCCEEEECC
Confidence            443 33 45555566666666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=1.1e-09  Score=110.07  Aligned_cols=84  Identities=13%  Similarity=0.219  Sum_probs=45.7

Q ss_pred             CCCCCCEEeCcCCccCCccChhhh---CCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcceeecChhhhc
Q 037514          509 NLLCLEYLGLSENSFLGSLPTSIG---NLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSWEGVITEKHFR  581 (636)
Q Consensus       509 ~l~~L~~L~Ls~n~~~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  581 (636)
                      .+++|+.|+|.+|.+....+..+.   .+++|++|+|++|.+.+.    ++..+..+++|+.|++++|.++...-. .+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~  328 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQ  328 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHH
Confidence            356667777766666543333332   356677777777776653    223334567777777777765432211 122


Q ss_pred             C-CCCCCeeeCCCCC
Q 037514          582 N-LSGLDYLTISSSN  595 (636)
Q Consensus       582 ~-l~~L~~L~ls~n~  595 (636)
                      . +  ...++++.++
T Consensus       329 ~al--g~~~~~~~~~  341 (362)
T 2ra8_A          329 KSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHC--CSEEECCSBC
T ss_pred             HHc--CCEEEecCCc
Confidence            1 1  3456777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=9.4e-10  Score=110.66  Aligned_cols=159  Identities=18%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             CCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhc--CCCCCCeEeCcC--CcCCCc-hhhhHHh-
Q 037514          407 CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMG--NLCNLHSLDISY--NHITGE-IKELTNA-  480 (636)
Q Consensus       407 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-~~~~~~~-  480 (636)
                      ..+|+|+.|++++|.-. .++. +. .++|++|++..|.+.......+.  .+++|++|+|+.  |...+. ....+.. 
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            34455555555554211 1121 22 45566666655555433222222  456666666542  111111 0001111 


Q ss_pred             hhcCCCCcccEEEcccCcCCCCCchhh---cCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCccccccccc
Q 037514          481 FSACNVSTLETLDLASNKLGGNLPDSL---GNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVMSRIISE  553 (636)
Q Consensus       481 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~  553 (636)
                      +....+++|+.|++++|.+.+..+..+   ..+++|+.|+|+.|.+.+.    ++..+.++++|+.|++++|.++...-.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            111124666666666666653322222   2456677777777766543    233334567777777777776654333


Q ss_pred             cccC-CCCCCEEECcCCc
Q 037514          554 NIGQ-LSEPYMLDLYGNS  570 (636)
Q Consensus       554 ~~~~-l~~L~~L~L~~n~  570 (636)
                      .+.. +  ...+++++++
T Consensus       326 ~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC--CSEEECCSBC
T ss_pred             HHHHHc--CCEEEecCCc
Confidence            3332 2  3456777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=4.9e-08  Score=88.46  Aligned_cols=13  Identities=8%  Similarity=0.202  Sum_probs=5.9

Q ss_pred             CCCCCCEEECCCC
Q 037514          432 DCSRLTALDIGGN  444 (636)
Q Consensus       432 ~l~~L~~L~L~~n  444 (636)
                      ..+.|++|+|++|
T Consensus        34 ~~~~L~~L~L~~n   46 (185)
T 1io0_A           34 NDPDLEEVNLNNI   46 (185)
T ss_dssp             TCTTCCEEECTTC
T ss_pred             cCCCCCEEEecCC
Confidence            3444444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=5.7e-08  Score=88.04  Aligned_cols=117  Identities=12%  Similarity=0.082  Sum_probs=50.9

Q ss_pred             hcCCCCCCeEeCcCC-cCCCchhhhHHhhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccCCc--
Q 037514          454 MGNLCNLHSLDISYN-HITGEIKELTNAFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGS--  526 (636)
Q Consensus       454 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~--  526 (636)
                      +...++|++|++++| .+.......+...-. ..++|++|+|++|++...    +...+...++|++|+|++|.+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            334445555555555 444322222221111 124445555555554421    222333444555555555554432  


Q ss_pred             --cChhhhCCCCCCeEeC--cCcccccc----ccccccCCCCCCEEECcCCcc
Q 037514          527 --LPTSIGNLSHLRALYL--SFNVMSRI----ISENIGQLSEPYMLDLYGNSW  571 (636)
Q Consensus       527 --~p~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  571 (636)
                        +...+...++|++|++  ++|.+...    +.+.+...++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              2333444455555555  45555432    122333445555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=9.4e-08  Score=90.96  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             cCCCCCCEEeCcCCccCC--ccChhhhCCCCCCeEeCcCccccccccccccCCC--CCCEEECcCCcceeecCh------
Q 037514          508 GNLLCLEYLGLSENSFLG--SLPTSIGNLSHLRALYLSFNVMSRIISENIGQLS--EPYMLDLYGNSWEGVITE------  577 (636)
Q Consensus       508 ~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------  577 (636)
                      .++++|+.|+|++|++.+  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|++|++++|++.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456667777777776665  3445566677777777777777664  2233333  788888888887766652      


Q ss_pred             hhhcCCCCCCeeeCC
Q 037514          578 KHFRNLSGLDYLTIS  592 (636)
Q Consensus       578 ~~~~~l~~L~~L~ls  592 (636)
                      .++..+++|+.||=.
T Consensus       245 ~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          245 AIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHCTTCCEESSC
T ss_pred             HHHHHCcccCeECCc
Confidence            346777888877643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=1.1e-06  Score=83.48  Aligned_cols=80  Identities=30%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             CCCCCCEEEccCCcCCCC--CCcCccCCCCCCEEEccCCcCCcCCCccccCCC--CCCEEeCcCCcCCCCCCCCC-----
Q 037514          159 ELPSLVELHLSNCQLNFP--QSLPFLNFTSLSILELSYDNFNSQIPQWLFNIS--TLVTLNLRSSQLSGSIPKFP-----  229 (636)
Q Consensus       159 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~-----  229 (636)
                      ++++|++|+|++|.+++.  ++..+..+++|++|+|++|.+++.  ..+..+.  +|++|+|++|.+.+.+|+.+     
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            455566666666655542  223344556666666666665552  2233333  66666666666655444211     


Q ss_pred             -CCCCCCCCEEE
Q 037514          230 -PGKMCNLRRLD  240 (636)
Q Consensus       230 -~~~l~~L~~L~  240 (636)
                       +..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence             44556666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=8.8e-07  Score=77.98  Aligned_cols=83  Identities=10%  Similarity=0.019  Sum_probs=49.5

Q ss_pred             cccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc-cCCccChhhhCC----CCCCeEeCcCcc-ccccccccccCCCCC
Q 037514          488 TLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNL----SHLRALYLSFNV-MSRIISENIGQLSEP  561 (636)
Q Consensus       488 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  561 (636)
                      .|+.||+++|.++..--..+.++++|+.|+|++|. ++..--..+..+    ++|++|+|++|. +++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666666664444455667777777777774 443333334443    357777777763 665544555666777


Q ss_pred             CEEECcCCc
Q 037514          562 YMLDLYGNS  570 (636)
Q Consensus       562 ~~L~L~~n~  570 (636)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=2e-06  Score=75.65  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=55.6

Q ss_pred             CCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCc-CCCchhhhHHhhhcCCCCcccEEEcccCc-CCCCCchhhcCCC
Q 037514          434 SRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNH-ITGEIKELTNAFSACNVSTLETLDLASNK-LGGNLPDSLGNLL  511 (636)
Q Consensus       434 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~  511 (636)
                      ..|++||+++|.++...-..+..+++|++|+|++|. +++..-..+..... ..++|++|+|++|. ++..--..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            467778888777776555556778888888888885 55332222222100 01356888888774 6644445566777


Q ss_pred             CCCEEeCcCCc
Q 037514          512 CLEYLGLSENS  522 (636)
Q Consensus       512 ~L~~L~Ls~n~  522 (636)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            78888888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=8.2e-05  Score=66.72  Aligned_cols=88  Identities=14%  Similarity=0.041  Sum_probs=40.2

Q ss_pred             hcCCCCCCEEeCcCCccCC----ccChhhhCCCCCCeEeCcCcccccc----ccccccCCCCCCEEECcCCcc---eeec
Q 037514          507 LGNLLCLEYLGLSENSFLG----SLPTSIGNLSHLRALYLSFNVMSRI----ISENIGQLSEPYMLDLYGNSW---EGVI  575 (636)
Q Consensus       507 l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~  575 (636)
                      +..-+.|+.|+|++|.+..    .+.+.+..-+.|++|+|++|.|...    +-+.+..-+.|++|+|++|..   ....
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3334445555555554432    1222333445555555555555432    223344445566666654422   1110


Q ss_pred             ---ChhhhcCCCCCCeeeCCCC
Q 037514          576 ---TEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       576 ---~~~~~~~l~~L~~L~ls~n  594 (636)
                         -...+...++|+.|+++.|
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCC
Confidence               0123445566666666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=0.00015  Score=65.10  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=30.5

Q ss_pred             CCCCCCEEECCCC-CCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC
Q 037514          432 DCSRLTALDIGGN-RFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG  500 (636)
Q Consensus       432 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  500 (636)
                      +-+.|++|+|++| .+...    ...++..-+.|+.|+|++|++.+.....+...-.. -++|++|+|++|.|+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCC
Confidence            3455666666553 44321    22234444555555555555553333333221111 134455555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.43  E-value=0.00013  Score=61.16  Aligned_cols=68  Identities=10%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             CeEeCcCcccc-ccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514          538 RALYLSFNVMS-RIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF  610 (636)
Q Consensus       538 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  610 (636)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+++ .+|.+.|..+++|+.|+|++|  +..|+|...|+..|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N--P~~CdC~l~~l~~w   79 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN--PWRCDCRLVPLRAW   79 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS--CCBCSGGGHHHHHH
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCC--CeeccCccHHHHHH
Confidence            36677777776 23443322  35788888888887 578888888888888888888  56666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0033  Score=52.49  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=19.2

Q ss_pred             CCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          536 HLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       536 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      +|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3455555555555544445555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	636
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 2e-13
 Identities = 67/372 (18%), Positives = 114/372 (30%), Gaps = 35/372 (9%)

Query: 77  LKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSS 136
           L ++  L         +    +  L+NL  ++ S       Q+T    + +L  L D+  
Sbjct: 43  LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-----QLTDITPLKNLTKLVDILM 95

Query: 137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDN 196
           +     +   L+ +TN   +      + ++       N  +     N  S         +
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 197 FNSQIPQWLFN----ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQ 252
                          ++ L TL       +         K+ NL  L    N  S     
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 215

Query: 253 FIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL 312
                     + L+ L            +  L  L  L+L  N    +        LTKL
Sbjct: 216 -------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKL 265

Query: 313 NSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAI 372
             L L ++  S +  +                +     +    L        LTL    I
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY------LTLYFNNI 319

Query: 373 SDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPD 432
           SD  P         KL  +  +NNK     +SSL +L ++ WL  G N +S    T L +
Sbjct: 320 SDISPVSSL----TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLAN 371

Query: 433 CSRLTALDIGGN 444
            +R+T L +   
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 2e-13
 Identities = 63/395 (15%), Positives = 124/395 (31%), Gaps = 33/395 (8%)

Query: 180 PFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL 239
                       L   N    + Q   ++  + TL      +  SI       + NL ++
Sbjct: 17  TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGV--EYLNNLTQI 71

Query: 240 DLAINGFSGEKE-QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWK 298
           + + N  +     + +  L     +  +  +   +    +     L      ++      
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 299 GIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKT 358
             +      + T  +   LS        +  +       L  +   +    S+      +
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 359 QAS----VFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYW 414
             +    +  L  +N  ISD  P          L  + L+ N+     + +L SL +L  
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 415 LRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEI 474
           L L  N +S      L   ++LT L +G N+   +   +         L+ +       I
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 475 KELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNL 534
             L N         L  L L  N +    P  + +L  L+ L  + N    S  +S+ NL
Sbjct: 304 SNLKN---------LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANL 350

Query: 535 SHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN 569
           +++  L    N +S +    +  L+    L L   
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 59/400 (14%), Positives = 129/400 (32%), Gaps = 43/400 (10%)

Query: 76  SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLS 135
           +L +     L +++ +  +     +L  +  L      +K            +  +  L+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-----------SIDGVEYLN 66

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYD 195
           +   ++    +L+ +T     +  L  LV++ ++N Q+     L  L   +   L  +  
Sbjct: 67  NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 196 NFNSQIPQWLFNISTLVTLN-LRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFI 254
                +          ++ N +        +         N       +   +  +   I
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 255 QTLSGCNNSTLETLETQRMNGTISENIGQLAE------LVALNLYRNSWKGIITENHFQN 308
            +    + S L  L         +  I  +        L  L+L  N  K I T     +
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT---LAS 239

Query: 309 LTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLS 368
           LT L  L L+++      +  +       L ++ +   Q+ +  P    T  +  +    
Sbjct: 240 LTNLTDLDLANNQ----ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---- 291

Query: 369 NAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELST 428
                + + D       + L+ + L  N      +S + SL  L  L    N +S    +
Sbjct: 292 --LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VS 345

Query: 429 SLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYN 468
           SL + + +  L  G N+   L    + NL  +  L ++  
Sbjct: 346 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 6e-11
 Identities = 62/382 (16%), Positives = 118/382 (30%), Gaps = 41/382 (10%)

Query: 125 VSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNF 184
           V+D +   DL     L  + + +  +      V  L +L +++ SN QL      P  N 
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLT--DITPLKNL 87

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
           T L  + ++ +      P       T +TL          +          L    ++  
Sbjct: 88  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147

Query: 245 GFSGEKEQFIQTLSGCNNSTLETLETQRMNG---------TISENIGQLAELVALNLYRN 295
                     Q   G   + L+ L                +    + +L  L +L    N
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207

Query: 296 SWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSW 355
               I       NL +L+                       +L  + + + Q+ +  P  
Sbjct: 208 QISDITPLGILTNLDELSLNGNQ-------LKDIGTLASLTNLTDLDLANNQISNLAP-- 258

Query: 356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWL 415
           L     + +L L    IS+  P      ++      +   +           +L +L +L
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI------SNLKNLTYL 312

Query: 416 RLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIK 475
            L  NN+S      +   ++L  L    N+   + S  + NL N++ L   +N I+    
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT- 367

Query: 476 ELTNAFSACNVSTLETLDLASN 497
                    N++ +  L L   
Sbjct: 368 ------PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 71/355 (20%), Positives = 126/355 (35%), Gaps = 32/355 (9%)

Query: 250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNL 309
           K     T+S  +   + TL+  R+     + +  L  L  +N   N    I      +NL
Sbjct: 31  KTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNL 87

Query: 310 TKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSN 369
           TKL  + ++++  + +  + +                       + L             
Sbjct: 88  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147

Query: 370 AAISDTIPDWFWGVISQKLSVIDLSNNKFFG---------GILSSLCSLPSLYWLRLGGN 420
           +A+S           +Q   +  L+N                +S L  L +L  L    N
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207

Query: 421 NLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNA 480
            +S    T L   + L  L + GN+   + +  + +L NL  LD++ N I+         
Sbjct: 208 QISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA------ 257

Query: 481 FSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRAL 540
                ++ L  L L +N++    P  L  L  L  L L+EN       + I NL +L  L
Sbjct: 258 -PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYL 312

Query: 541 YLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSN 595
            L FN +S I    +  L++   L    N    V       NL+ +++L+   + 
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQ 362

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 57/267 (21%), Positives = 90/267 (33%), Gaps = 11/267 (4%)

Query: 280 NIGQLAELVALNLYRNSWKGIIT-ENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSL 338
              Q   +  L+L   +        +   NL  LN LY+     +LV  +         L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG-INNLVGPIPPAIAKLTQL 103

Query: 339 RQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKF 398
             + I    +  A P +L    ++  L  S  A+S T+P     + +     I    N+ 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV--GITFDGNRI 161

Query: 399 FGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLC 458
            G I  S  S   L+       N              L  +D+  N      S   G+  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 459 NLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGL 518
           N   + ++ N +        +         L  LDL +N++ G LP  L  L  L  L +
Sbjct: 222 NTQKIHLAKNSLA------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 519 SENSFLGSLPTSIGNLSHLRALYLSFN 545
           S N+  G +P   GNL        + N
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 7e-10
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 25/305 (8%)

Query: 42  CTEREREALLKFKGLIDPSARLSSWKSPIPEFVYS-----------LKKLKLLDLSESSF 90
           C  ++++ALL+ K  +     LSSW         +             ++  LDLS  + 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 91  SGM--LPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS 148
                +P ++ NL  L +L +   N     I   +     +    ++ +         LS
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 149 KVT---NWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWL 205
           ++          N L   +   +S+       +      +          +         
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 206 FN------ISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSG 259
            N        T   LNL    LS ++ +     +    +    I+         +  +  
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 260 CNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
             N     L   R+ GT+ + + QL  L +LN+  N+  G I +    NL + +     +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAY-A 299

Query: 320 SNKSL 324
           +NK L
Sbjct: 300 NNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 50/292 (17%), Positives = 83/292 (28%), Gaps = 36/292 (12%)

Query: 158 NELPSLVELHLSNCQLNFPQSLP--FLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLN 215
            +   +  L LS   L  P  +P    N   L+ L +   N             T +   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 216 LRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNG 275
             +             ++  L  LD + N  SG     I +L                  
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI------------ 154

Query: 276 TISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPP 335
                              N   G I +++    +KL +    S N+       +     
Sbjct: 155 ---------------TFDGNRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTFANL- 197

Query: 336 FSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSN 395
                +A  D               S       + A +    D     +S+ L+ +DL N
Sbjct: 198 ----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253

Query: 396 NKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFL 447
           N+ +G +   L  L  L+ L +  NNL GE+     +  R        N+ L
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 11/279 (3%)

Query: 294 RNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDC-QLGSAF 352
             +W G++ +       ++N+L LS  N    + + S       L  + I     L    
Sbjct: 35  NRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 353 PSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSL 412
           P  +     +  L +++  +S  IPD+      + L  +D S N   G +  S+ SLP+L
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 413 YWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITG 472
             +   GN +SG +  S    S+L          L           NL  +D+S N + G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 473 EIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIG 532
           +   L  +               +          +G    L  L L  N   G+LP  + 
Sbjct: 212 DASVLFGSDKNTQ------KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSW 571
            L  L +L +SFN +   I +  G L    +     N  
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 43/279 (15%), Positives = 96/279 (34%), Gaps = 14/279 (5%)

Query: 222 SGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENI 281
              + K P     +   LDL  N  +  K+   + L    N     L   +++       
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK---NLHTLILINNKISKISPGAF 75

Query: 282 GQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQM 341
             L +L  L L +N  K +  +           L +  +  + V     + +    + ++
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVEL 131

Query: 342 AINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG 401
             N  +         +    +  + +++  I+              L+ + L  NK    
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKV 186

Query: 402 ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
             +SL  L +L  L L  N++S   + SL +   L  L +  N+ +++P   + +   + 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQ 245

Query: 462 SLDISYNHITG-EIKELTNAFSACNVSTLETLDLASNKL 499
            + +  N+I+     +          ++   + L SN +
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 9/199 (4%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           +    +++DL NNK          +L +L+ L L  N +S     +     +L  L +  
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
           N+  +LP      L  L   +     +   +      F+  N   +  L     K  G  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSV------FNGLNQMIVVELGTNPLKSSGIE 142

Query: 504 PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM 563
             +   +  L Y+ +++ + + ++P  +     L  L+L  N ++++ + ++  L+    
Sbjct: 143 NGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 564 LDLYGNSWEGVITEKHFRN 582
           L L  NS   V        
Sbjct: 200 LGLSFNSISAVDNGSLANT 218

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 44/268 (16%), Positives = 86/268 (32%), Gaps = 23/268 (8%)

Query: 67  KSPIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVS 126
                    +LK L  L L  +  S + P     L  L+ L LS   LKE        + 
Sbjct: 44  TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 103

Query: 127 DLIW------------LPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN 174
           +L                 L+    + L    L            +  L  + +++  + 
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 175 FPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSG----SIPKFPP 230
              ++P     SL+ L L  +         L  ++ L  L L  + +S     S+   P 
Sbjct: 164 ---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 231 GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVAL 290
            +  +L    L          ++IQ +   NN+ +  + +            + A    +
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGY--NTKKASYSGV 277

Query: 291 NLYRNSWKGI-ITENHFQNLTKLNSLYL 317
           +L+ N  +   I  + F+ +    ++ L
Sbjct: 278 SLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 47/308 (15%), Positives = 90/308 (29%), Gaps = 44/308 (14%)

Query: 170 NCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP 229
            C     + +P       ++L+L  +           N+  L TL L ++++S   P   
Sbjct: 16  QCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA- 74

Query: 230 PGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVA 289
              +  L RL L+ N      E+  +TL                                
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH-------------------------- 108

Query: 290 LNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLG 349
                 +    + ++ F  L ++  + L ++           +     L  + I D  + 
Sbjct: 109 -----ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 350 SAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSL 409
           +          S+ +L L    I+        G+    L+ + LS N        SL + 
Sbjct: 164 TIPQGLPP---SLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDNGSLANT 218

Query: 410 PSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSM------GNLCNLHSL 463
           P L  L L  N L       L D   +  + +  N    + S             +   +
Sbjct: 219 PHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 464 DISYNHIT 471
            +  N + 
Sbjct: 278 SLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 53/309 (17%), Positives = 105/309 (33%), Gaps = 46/309 (14%)

Query: 285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAIN 344
            +   L+L  N    I  +  F+NL  L++L L ++   +       + P   L ++ ++
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLS 87

Query: 345 DCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILS 404
             QL        KT     +L +    I+      F G+    +  +  +  K  G    
Sbjct: 88  KNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 405 SLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLD 464
           +   +  L ++R+   N++       P    LT L + GN+  ++ + S+  L NL  L 
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFL 524
           +S+N I+                                                 N+ L
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELH------------------------------LNNNKL 231

Query: 525 GSLPTSIGNLSHLRALYLSFNVMSRIISE------NIGQLSEPYMLDLYGNSWEGV-ITE 577
             +P  + +  +++ +YL  N +S I S          + +    + L+ N  +   I  
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

Query: 578 KHFRNLSGL 586
             FR +   
Sbjct: 292 STFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 38/244 (15%), Positives = 76/244 (31%), Gaps = 25/244 (10%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
             LLDL  +  + +   +  NL NL  L L             +          L     
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---------ISKISPGAFAPLVKLER 83

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
           L+L   +L ++   +    +     EL +   ++   +   F     + ++EL  +   S
Sbjct: 84  LYLSKNQLKELPEKMPKTLQ-----ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 200 --QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTL 257
                     +  L  + +  + ++      P G   +L  L L  N  +      ++ L
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 258 SGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYL 317
           +      L       ++     N   L EL   N      K +       +   +  +YL
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-----NKLVKVPGGLADHKYIQVVYL 249

Query: 318 SSSN 321
            ++N
Sbjct: 250 HNNN 253

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 8/224 (3%)

Query: 360 ASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGG 419
           A+  ++ L    IS      F     + L+++ L +N       ++   L  L  L L  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 420 NNLSGEL-STSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
           N     +   +     RL  L +      +L       L  L  L +  N +     +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-- 147

Query: 479 NAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLR 538
              +  ++  L  L L  N++      +   L  L+ L L +N      P +  +L  L 
Sbjct: 148 ---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 539 ALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRN 582
            LYL  N +S + +E +  L     L L  N W      +    
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 41/242 (16%), Positives = 69/242 (28%), Gaps = 16/242 (6%)

Query: 80  LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRY 139
            + + L  +  S +   +     NL  L L    L          ++ L  L    +++ 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 140 LHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS 199
             ++                L  L  LHL  C L       F    +L  L L  +   +
Sbjct: 94  RSVDPATFHG----------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 200 QIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSG 259
                  ++  L  L L  +++S  +P+     + +L RL L  N  +       + L  
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 260 CNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
                L       +       +  L     L L  N W              L     SS
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQY---LRLNDNPWVCDCRARPL--WAWLQKFRGSS 257

Query: 320 SN 321
           S 
Sbjct: 258 SE 259

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 38/268 (14%), Positives = 75/268 (27%), Gaps = 44/268 (16%)

Query: 161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQ 220
            +   + L   +++   +  F    +L+IL L  +            ++ L  L+L  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 221 LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISEN 280
              S+       +  L  L L   G         +            L+   +     + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG---LAALQYLYLQDNALQALPDDT 148

Query: 281 IGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQ 340
              L  L  L L+ N    +     F+ L  L+ L L  +  + V       +       
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 341 MAIN----------------------------DCQLGSAFPSWLKTQASVFKLTLSNAAI 372
           +  N                            DC+      +WL+      K   S++ +
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ------KFRGSSSEV 260

Query: 373 SDTIPDWFWGVISQKLSVIDLSNNKFFG 400
             ++P    G       +  L+ N   G
Sbjct: 261 PCSLPQRLAG-----RDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 7e-07
 Identities = 47/436 (10%), Positives = 109/436 (25%), Gaps = 33/436 (7%)

Query: 68  SPIPEFVYSLKKLKLLDLSESSFSGM----LPPNIGNLSNLQYLDLSYQNLKEYQIT--- 120
           +   E +  L++ +++ L +   +      +   +     L  L+L    L +  +    
Sbjct: 17  ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76

Query: 121 ----------KELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSN 170
                     ++L + +              L  +   +  +    +     L  L    
Sbjct: 77  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 136

Query: 171 CQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPP 230
                      L + SLS           +       ++     +      +G       
Sbjct: 137 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV----SNNDINEAGVRVLCQG 192

Query: 231 GKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVAL 290
            K    +   L +       +          +           N      + +L   +  
Sbjct: 193 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 252

Query: 291 NLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGS 350
              R     I                L +       ++  + +     R +     + G 
Sbjct: 253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 312

Query: 351 AFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLP 410
              S      S      S+ +       +   +      + D    +   G+      L 
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372

Query: 411 SLYWLRLGGNNLSGE----LSTSLPDCSRLTALDIGGNRF-----LQLPSTSMGNLCNLH 461
            L+   L   ++S      L+ +L     L  LD+  N       LQL  +     C L 
Sbjct: 373 VLW---LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 462 SLDISYNHITGEIKEL 477
            L +   + + E+++ 
Sbjct: 430 QLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 57/448 (12%), Positives = 105/448 (23%), Gaps = 26/448 (5%)

Query: 138 RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN--FPQSLP--FLNFTSLSILELS 193
           + L ++  +LS    W +++  L     + L +C L     + +        +L+ L L 
Sbjct: 5   QSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 194 YDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLA---INGFSGEK 250
            +         +       +  ++   L           + +     L        S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 251 EQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLT 310
                    C          +++            E +A  L        +T ++     
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 311 KLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNA 370
               +       S                    + C + ++  S  +      KL     
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 371 AISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRL---------GGNN 421
           A            +            K  G +   L +  SL  L L             
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 422 LSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAF 481
               L       S                S+ +     L  L IS N +           
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 482 SACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFLGSLPTSIG----- 532
                S L  L LA   +  +    L  +L     L  L LS N    +    +      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 533 NLSHLRALYLSFNVMSRIISENIGQLSE 560
               L  L L     S  + + +  L +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 436 LTALDIGGNRFLQLPSTSM-GNLCNLHSLDISYNHITGE-IKELTNAFSACNVSTLETLD 493
           + +LDI            +   L     + +    +T    K++++A        L  L+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN--PALAELN 61

Query: 494 LASNKLGGNLPDSLGNLLC-----LEYLGLS 519
           L SN+LG      +   L      ++ L L 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 21/111 (18%)

Query: 388 LSVIDLSNNKFFGGILSSLCS-LPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
           +  +D+   +      + L   L     +RL    L+      +                
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-------------- 49

Query: 447 LQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASN 497
                 ++     L  L++  N +                  ++ L L + 
Sbjct: 50  ------ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 459 NLHSLDISYNHITGE-IKELTNAFSACNVSTLETLDLASNKLGG----NLPDSLGNLLCL 513
           ++ SLDI    ++     EL      C     + + L    L      ++  +L     L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQC-----QVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 514 EYLGLSENSFLGSLPTSIG-----NLSHLRALYLS 543
             L L  N         +          ++ L L 
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 489 LETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSF----LGSLPTSIGNLSHLRALYLS 543
           +++LD+   +L      + L  L   + + L +          + +++     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 544 FNVMSRIISENIGQL 558
            N +  +    + Q 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 180 PFLNFTSLSILELSYDNFNSQ----IPQWLFNISTLVTLNLRSSQLSGS----IPKFPPG 231
                + L +L L+  + +      +   L    +L  L+L ++ L  +    + +    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 232 KMCNLRRLDLAINGFSGEKEQFIQTLSGCNNS 263
             C L +L L    +S E E  +Q L     S
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 455

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 9/188 (4%)

Query: 384 ISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGG 443
           + +  +++ LS N  +   L++L     L  L     NL     T L     L  L    
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQL-----NLDRAELTKLQVDGTLPVLGT-- 81

Query: 444 NRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNL 503
              L         L       ++   ++          +   +  L+ L L  N+L    
Sbjct: 82  -LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 504 PDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYM 563
           P  L     LE L L+ N+        +  L +L  L L  N +   I +          
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 564 LDLYGNSW 571
             L+GN W
Sbjct: 200 AFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 36/180 (20%), Positives = 53/180 (29%), Gaps = 14/180 (7%)

Query: 78  KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSS 137
           K   +L LSE+         +   + L  L+L    L + Q+   L           +  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQL 89

Query: 138 RYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLS--------- 188
           + L L G  L  +T      N L SL    L          L      +L          
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 189 --ILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF 246
              L L+ +N        L  +  L TL L+ + L      F       L    L  N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 31/245 (12%)

Query: 157 VNELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLN 215
           V+++ S +E++     L   P  LP       +IL LS +   +     L   + L  LN
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 216 LRSSQ------------LSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLS----G 259
           L  ++            L          +   L    L            + +L      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 260 CNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS 319
                 E         T+   +      +      N+    +       L  L++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 320 SNKSLVFTMRSDWIPPFSLRQMAIN------DCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
           ++   ++T+   +     L    ++      +C++   F  WL+  A    +      + 
Sbjct: 182 NS---LYTIPKGFFGSHLLPFAFLHGNPWLCNCEI-LYFRRWLQDNAENVYVWKQGVDVK 237

Query: 374 DTIPD 378
               +
Sbjct: 238 AMTSN 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 40/241 (16%)

Query: 207 NISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLE 266
            +++ + +N     L+      PP    +   L L+ N                      
Sbjct: 8   KVASHLEVNCDKRNLT----ALPPDLPKDTTILHLSENLLYT------------------ 45

Query: 267 TLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVF 326
                         +     L  LNL R            Q    L  L     + + + 
Sbjct: 46  ---------FSLATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 327 TMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQ 386
           ++        +L  + ++  +L S     L+    + +L L    +    P         
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 387 KLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRF 446
           +   +  +NN         L  L +L  L L  N+L   +         L    + GN +
Sbjct: 151 EKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 447 L 447
           L
Sbjct: 208 L 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 46/277 (16%), Positives = 87/277 (31%), Gaps = 13/277 (4%)

Query: 190 LELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGE 249
           L+L+  N +  +   L +   +     R  +     P         ++ +DL+ +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA---FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 250 KEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHF--- 306
               I  LS C+     +LE  R++  I   + + + LV LNL   S             
Sbjct: 62  TLHGI--LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 307 -QNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKL 365
              L +LN  +     +  V    +      +   ++     L  +  S L  +      
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 366 TLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGGNNLSG 424
              + ++      +        L  + LS         L  L  +P+L  L++ G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
            L            L I  + F  +   ++GN  N  
Sbjct: 240 TLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQE 273

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 49/334 (14%), Positives = 98/334 (29%), Gaps = 30/334 (8%)

Query: 185 TSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAIN 244
                LEL+    +S +P+   +   L +L    + L+  +P+ P     +L+ L +  N
Sbjct: 38  RQAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELP----QSLKSLLVDNN 88

Query: 245 GFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITEN 304
                 +          ++       +  N +  + I      +            I   
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 305 HFQNLTKLNSLYLSSS------NKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKT 358
           + Q         L         N SL             +    I +         +L T
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 359 QASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG 418
             +   L  +   +  ++                  +  F     +    L  L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 419 GNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELT 478
            N  S E+ +       L  L++  N+ ++LP+        L  L  S+NH+    +   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQ 324

Query: 479 NAFSACNVSTLETLDLASNKLGG--NLPDSLGNL 510
           N         L+ L +  N L    ++P+S+ +L
Sbjct: 325 N---------LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 50/314 (15%), Positives = 86/314 (27%), Gaps = 17/314 (5%)

Query: 162 SLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQL 221
              EL L+N  L    SLP L    L  L  S ++  +++P+   ++ +L+  N     L
Sbjct: 39  QAHELELNNLGL---SSLPEL-PPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKAL 93

Query: 222 SGSIPKFPPGKMCNLRRLDLAINGF--SGEKEQFIQTLSGCNNSTLETLETQRMNGTISE 279
           S   P      + N +   L         +                 +LE         E
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 280 NIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLR 339
            + +L  L  L         +          +      +   +             ++  
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 340 QMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFF 399
            +      L  +  +       +  L     +++             +L       N   
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 400 GGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDC-SRLTALDIGGNRFLQLPSTSMGNLC 458
             I S     PSL  L +  N L       LP    RL  L    N   ++P        
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLAEVPEL----PQ 324

Query: 459 NLHSLDISYNHITG 472
           NL  L + YN +  
Sbjct: 325 NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%)

Query: 456 NLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY 515
              +L  L++S N +                  LE L  + N L   +P+   NL   + 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPR---------LERLIASFNHLA-EVPELPQNL---KQ 328

Query: 516 LGLSENSFLGSLPTSIGNLSHLR 538
           L +  N  L   P    ++  LR
Sbjct: 329 LHVEYNP-LREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 45/330 (13%), Positives = 82/330 (24%), Gaps = 20/330 (6%)

Query: 135 SSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN-FPQSLPFLNFTSLSILELS 193
             +  L L  + LS +          P L  L  S   L   P+    L    +    L 
Sbjct: 38  RQAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 194 YDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQF 253
             +    + ++L   +  +         S                       F       
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 254 IQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN 313
           ++ L    N    T      N         L+    +       +    +N     T   
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 314 SLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS 373
              L  +   L  ++ +  +    L  +      L     S                  +
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 374 DTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL-CSLPSLYWLRLGGNNLSGELSTSLPD 432
            +        +   L  +++SNNK     L  L    P L  L    N+L       +P+
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASFNHL-----AEVPE 321

Query: 433 -CSRLTALDIGGNRFLQLPSTSMGNLCNLH 461
               L  L +  N   + P     ++ +L 
Sbjct: 322 LPQNLKQLHVEYNPLREFPD-IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 484 CNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLS 543
               +LE L++++NKL   LP     L   E L  S N  L  +P    NL  L   ++ 
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNH-LAEVPELPQNLKQL---HVE 332

Query: 544 FNVMSRI--ISENIGQL 558
           +N +     I E++  L
Sbjct: 333 YNPLREFPDIPESVEDL 349

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 37/365 (10%)

Query: 136 SSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLN--FPQSLP--FLNFTSLSILE 191
             + L L+ +      +   V+ E  S+ E+ LS   +     + L     +   L I E
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 192 LSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKE 251
            S         +    +  L+   L+  +L  ++           +   +         E
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 252 QFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTK 311
                 +G        +        +++       L ++   RN  +    +   +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 312 LNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAA 371
              L+     ++ +     + +    L                     +++         
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI------- 237

Query: 372 ISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLP 431
            +         +      +              S      L  LRL  N +  +   +L 
Sbjct: 238 -ALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNEIELDAVRTLK 294

Query: 432 DCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGE---IKELTNAFSACNVST 488
                                    + +L  L+++ N  + E   + E+   FS      
Sbjct: 295 TVID-------------------EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

Query: 489 LETLD 493
           L+ LD
Sbjct: 336 LDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 37/349 (10%), Positives = 91/349 (26%), Gaps = 35/349 (10%)

Query: 186 SLSILELSYDNFNSQ----IPQWLFNISTLVTLNLRSSQLSGSIPKFPP---GKMCNLRR 238
           S+    L  D   ++    +   L    ++  + L  + +     ++         +L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 239 LDLAINGFSGEKEQFIQTLS--GCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNS 296
            + +       K++  + L            L T R++        Q   +  L+ +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 297 WKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWL 356
               +  N                         +  +      +  + +  +     ++ 
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 357 KTQASVFKLTLSNAAISDTIPDWFWGVISQKLS------VIDLSNNKFFGGILSSLCSLP 410
             +       + N    + I       ++            +   +     +  +L S P
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 411 SLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHI 470
           +L  L L    LS   + ++ D                    S      L +L + YN I
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDA------------------FSKLENIGLQTLRLQYNEI 285

Query: 471 TGEIKELTNAFSACNVSTLETLDLASNKLG--GNLPDSLGNLLCLEYLG 517
             +            +  L  L+L  N+     ++ D +  +      G
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 31/212 (14%), Positives = 54/212 (25%), Gaps = 6/212 (2%)

Query: 287 LVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDC 346
            + L       + I  +  F     L  + +S ++   V         P           
Sbjct: 31  AIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 347 QLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSL 406
            L    P   +   ++  L +SN  I           + + L  I  + N       S +
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 149

Query: 407 CSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466
                   L L  N +    + +              N   +LP+           LDIS
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 467 YNHITGEIKELTNAFSACNVSTLETLDLASNK 498
              I       +      N+  L      + K
Sbjct: 210 RTRIHSLP---SYGLE--NLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 24/228 (10%), Positives = 47/228 (20%), Gaps = 6/228 (2%)

Query: 224 SIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQ 283
            + + P     N   L   +      ++             +   +   +      +   
Sbjct: 19  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAI 343
               + +    N                 N  YL  SN  +        I       + I
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLP----NLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 344 NDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGIL 403
            D               S   + L                 +Q   +    NN       
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 404 SSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPS 451
                      L +    +    S  L +  +L A      +  +LP+
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--KLPT 240

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 11/113 (9%)

Query: 439 LDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNK 498
           L +       L    +  L  +  LD+S+N +      L        +          + 
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--------SD 52

Query: 499 LGGNLPDSLGNLLCLEYLGLSENSFLG-SLPTSIGNLSHLRALYLSFNVMSRI 550
                 D + NL  L+ L L  N     +    + +   L  L L  N + + 
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 23/140 (16%)

Query: 81  KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYL 140
           ++L L+    +     ++  L  + +LDLS+  L+            L  L  L   +  
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA-------LPPALAALRCLEVLQAS 51

Query: 141 HLEGMKLSKVTNWLQVVNELPSLVELHLSNCQL-NFPQSLPFLNFTSLSILELSY----- 194
                 +  V N  ++        EL L N +L       P ++   L +L L       
Sbjct: 52  DNALENVDGVANLPRL-------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Query: 195 -DNFNSQIPQWLFNISTLVT 213
            +    ++ + L ++S+++T
Sbjct: 105 EEGIQERLAEMLPSVSSILT 124

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 26/227 (11%)

Query: 100 NLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE 159
            L+N   +     N           V+D +   DL     L   G  ++ +      V  
Sbjct: 17  ALANAIKIAAGKSN-----------VTDTVTQADLDGITTLSAFGTGVTTIEG----VQY 61

Query: 160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSS 219
           L +L+ L L + Q+     L  L   +   L  +     S I       +  +T    + 
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 220 QLSGSIPKFPPGKMCNLRRLDLAINGF--------SGEKEQFIQTLSGCNNSTLETLETQ 271
               +          +L ++               S    Q        N S L TL+  
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 272 RMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLS 318
               +    +  L  L+ ++L  N    +       N + L  + L+
Sbjct: 182 DNKISDISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 13/212 (6%)

Query: 262 NSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKL----NSLYL 317
           N+         +  T+++    L  +  L+ +      I    +  NL  L    N +  
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 318 SSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAIS---D 374
            +  K+L      +          AI   Q              V  L   +       D
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 375 TIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCS 434
                    ++   ++  LS        L+ L +L  L  L+   N +S    + L    
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLP 195

Query: 435 RLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS 466
            L  + +  N+   +    + N  NL  + ++
Sbjct: 196 NLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 11/187 (5%)

Query: 284 LAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSN-------KSLVFTMRSDWIPPF 336
           LAE +   L + +    +++     +T L +  L   +        +L     S+     
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76

Query: 337 SLRQMAINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNN 396
                 +          + +     +  LT                 +    ++  L  +
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136

Query: 397 KFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGN 456
                 +S+L  L SL  L    N ++      L + + L  LDI  N+   +    +  
Sbjct: 137 SNTISDISALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISSNKVSDIS--VLAK 192

Query: 457 LCNLHSL 463
           L NL SL
Sbjct: 193 LTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	636
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.27

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-27  Score=243.48  Aligned_cols=191  Identities=24%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             hcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCC
Q 037514          356 LKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSR  435 (636)
Q Consensus       356 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  435 (636)
                      ...+++++.+++++|.+++..|..  ..  ++|++|++++|++++.  ..+..+++|+.+++++|.+++..  .+..+++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~--~~--~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLG--IL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGG--GC--TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             cccccccceeeccCCccCCCCccc--cc--CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccccccc
Confidence            344455555555555555443321  12  4555566655555432  23444555555555555554322  2444555


Q ss_pred             CCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCE
Q 037514          436 LTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEY  515 (636)
Q Consensus       436 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  515 (636)
                      |++|+++++.+++..+  +..++.++.+++.+|++.+.. . +   ..  +++++.|++++|++++..  .+..+++|++
T Consensus       265 L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~-~-~---~~--~~~l~~L~ls~n~l~~l~--~l~~l~~L~~  333 (384)
T d2omza2         265 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS-P-I---SN--LKNLTYLTLYFNNISDIS--PVSSLTKLQR  333 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG-G-G---GG--CTTCSEEECCSSCCSCCG--GGGGCTTCCE
T ss_pred             CCEeeccCcccCCCCc--ccccccccccccccccccccc-c-c---ch--hcccCeEECCCCCCCCCc--ccccCCCCCE
Confidence            5555555555554432  444445555555555444211 0 1   11  133344444444444321  1344444444


Q ss_pred             EeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCC
Q 037514          516 LGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       516 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      |++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       334 L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            4444444432 22 24444444444444444444322  344444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=8.5e-30  Score=253.25  Aligned_cols=175  Identities=22%  Similarity=0.399  Sum_probs=103.9

Q ss_pred             ccCHHhHHHHHhcc-CCCCCCCCCCCCCcc-cC-c--cc-------cCCCCCCEEeCCCCCCCC--CCCccccCCCCCCE
Q 037514           41 RCTEREREALLKFK-GLIDPSARLSSWKSP-IP-E--FV-------YSLKKLKLLDLSESSFSG--MLPPNIGNLSNLQY  106 (636)
Q Consensus        41 ~c~~~~~~~l~~~~-~l~~~~~~~~~w~~~-~p-~--~~-------~~l~~L~~L~Ls~~~i~~--~~~~~l~~l~~L~~  106 (636)
                      -|.++|++|+++|| ++.++. .+++|... -| .  |-       ..-.+|++|+|++++++|  .+|.++++|++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            49999999999999 887654 57778521 11 1  11       122357777777777766  36677777777777


Q ss_pred             EeCcC-CCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCC
Q 037514          107 LDLSY-QNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFT  185 (636)
Q Consensus       107 L~Ls~-n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  185 (636)
                      |+|++ |++++.                                   +|..++++++|++|+|++|++.+..+..+..+.
T Consensus        81 L~Ls~~N~l~g~-----------------------------------iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          81 LYIGGINNLVGP-----------------------------------IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             EEEEEETTEESC-----------------------------------CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             cccccccccccc-----------------------------------cccccccccccchhhhccccccccccccccchh
Confidence            77765 555431                                   223455555555555555555555555555666


Q ss_pred             CCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC-CCEEEcccccCccccch
Q 037514          186 SLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN-LRRLDLAINGFSGEKEQ  252 (636)
Q Consensus       186 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~-L~~L~L~~n~~~~~~~~  252 (636)
                      +|+++++++|.+.+.+|..+.++++|+++++++|.+.+.+|.. +..+.+ ++.+++++|++++..+.
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~  192 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG
T ss_pred             hhcccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccccccc
Confidence            6666666666666556666666666666666666665554432 233333 25555555555544443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-26  Score=235.95  Aligned_cols=167  Identities=27%  Similarity=0.379  Sum_probs=118.2

Q ss_pred             CCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCC
Q 037514          358 TQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLT  437 (636)
Q Consensus       358 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  437 (636)
                      .+++|++|++++|.+++..  .+...  ++|+.+++++|.+++..  .+..+++|++|+++++++.+..  .+..++.++
T Consensus       217 ~~~~L~~L~l~~n~l~~~~--~l~~l--~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~  288 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIG--TLASL--TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALT  288 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGGGC--TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             ccCCCCEEECCCCCCCCcc--hhhcc--cccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccc
Confidence            3455555566555555421  23333  67777777777776543  3667778888888888776432  366777888


Q ss_pred             EEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEe
Q 037514          438 ALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLG  517 (636)
Q Consensus       438 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  517 (636)
                      .++++.|.+.+..  .+..++++++|++++|++++..+  +   ..  +++|++|++++|++++ ++ .+.++++|++|+
T Consensus       289 ~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l---~~--l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~  357 (384)
T d2omza2         289 NLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--V---SS--LTKLQRLFFANNKVSD-VS-SLANLTNINWLS  357 (384)
T ss_dssp             EEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--G---GG--CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred             ccccccccccccc--ccchhcccCeEECCCCCCCCCcc--c---cc--CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence            8888888887654  36778888888888888876432  2   22  3777888888888874 44 588889999999


Q ss_pred             CcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          518 LSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       518 Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      +++|++++..|  +.++++|+.|+|++|
T Consensus       358 l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         358 AGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99998886554  788899999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=5.1e-28  Score=240.31  Aligned_cols=248  Identities=23%  Similarity=0.286  Sum_probs=221.2

Q ss_pred             CccEEEccCCCCCc--CCChhhcCCCCcceecccc-ccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCc
Q 037514          337 SLRQMAINDCQLGS--AFPSWLKTQASVFKLTLSN-AAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLY  413 (636)
Q Consensus       337 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  413 (636)
                      .++.|+++++.+.+  .+|..+.++++|++|++++ |.+.|.+|..+..+  ++|++|++++|++.+..+..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L--~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC--TTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc--cccchhhhccccccccccccccchhhhc
Confidence            57778888877776  4788999999999999987 78998999999888  8999999999999988888889999999


Q ss_pred             EEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCC-CeEeCcCCcCCCchhhhHHhhhcCCCCcccEE
Q 037514          414 WLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNL-HSLDISYNHITGEIKELTNAFSACNVSTLETL  492 (636)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  492 (636)
                      .+++++|.+.+.+|..+.+++.++++++++|.+.+..|..+..+.++ +.+++++|++++..+..+...      ....+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l------~~~~l  202 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------NLAFV  202 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------CCSEE
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc------ccccc
Confidence            99999999998899999999999999999999998877778888776 889999999998887766532      34679


Q ss_pred             EcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcce
Q 037514          493 DLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWE  572 (636)
Q Consensus       493 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  572 (636)
                      +++++...+.+|..+..+++++.+++++|.+.+.+| .+..+++|++|++++|++++.+|..+.++++|++|+|++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999987766 5888999999999999999999999999999999999999999


Q ss_pred             eecChhhhcCCCCCCeeeCCCCC
Q 037514          573 GVITEKHFRNLSGLDYLTISSSN  595 (636)
Q Consensus       573 ~~~~~~~~~~l~~L~~L~ls~n~  595 (636)
                      |.+|+  +.++++|+.+++++|+
T Consensus       282 g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         282 GEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCC--STTGGGSCGGGTCSSS
T ss_pred             ccCCC--cccCCCCCHHHhCCCc
Confidence            99996  5788999999999994

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=207.21  Aligned_cols=258  Identities=21%  Similarity=0.268  Sum_probs=132.6

Q ss_pred             CCCCEEEccCCcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCCCCCcCCChhhcCCCCcce
Q 037514          285 AELVALNLYRNSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDCQLGSAFPSWLKTQASVFK  364 (636)
Q Consensus       285 ~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  364 (636)
                      +++++|++++|+++. +++..|.++++|++|++++|                          .+....|..+.+++.|++
T Consensus        31 ~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~l~~n--------------------------~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          31 PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINN--------------------------KISKISPGAFAPLVKLER   83 (305)
T ss_dssp             TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSS--------------------------CCCCBCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCC-cChhHhhccccccccccccc--------------------------cccccchhhhhCCCccCE
Confidence            467778888887776 55546777777777777766                          333333444445555555


Q ss_pred             eccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCC--cccCCCCCCCCCCCEEECC
Q 037514          365 LTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLS--GELSTSLPDCSRLTALDIG  442 (636)
Q Consensus       365 L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~  442 (636)
                      |++++|+++......+     ..++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|++++++
T Consensus        84 L~l~~n~l~~l~~~~~-----~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          84 LYLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             EECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             ecccCCccCcCccchh-----hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            5555555443322111     34555555555554444444444455555555554332  1223344455555555555


Q ss_pred             CCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc
Q 037514          443 GNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS  522 (636)
Q Consensus       443 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  522 (636)
                      +|.+...+..   .+++|++|++++|..++..+..+..     ++.+++|++++|.+++..+..+.++++|++|+|++|+
T Consensus       159 ~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         159 DTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             SSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             cCCccccCcc---cCCccCEEECCCCcCCCCChhHhhc-----cccccccccccccccccccccccccccceeeeccccc
Confidence            5555543321   2345555555555554443333221     2334555555555554445555555666666666665


Q ss_pred             cCCccChhhhCCCCCCeEeCcCccccccccccc------cCCCCCCEEECcCCcce-eecChhhhcCC
Q 037514          523 FLGSLPTSIGNLSHLRALYLSFNVMSRIISENI------GQLSEPYMLDLYGNSWE-GVITEKHFRNL  583 (636)
Q Consensus       523 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~-~~~~~~~~~~l  583 (636)
                      ++ .+|.+|.++++|++|++++|+|+.+....|      ...++|+.|++++|++. ..++...|+.+
T Consensus       231 L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             cc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            55 345555556666666666665555433222      23455555566665543 23444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.4e-23  Score=203.54  Aligned_cols=103  Identities=22%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             CCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeC
Q 037514          137 SRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNL  216 (636)
Q Consensus       137 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  216 (636)
                      +++++-+++.++.+|.   .+  .+++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus        12 ~~~~~C~~~~L~~lP~---~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPK---DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCCSCCC---SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCCccCC---CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4455555555555543   22  246777777777777666667777777777777777777766677777777777777


Q ss_pred             cCCcCCCCCCCCCCCCCCCCCEEEcccccCcc
Q 037514          217 RSSQLSGSIPKFPPGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       217 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~  248 (636)
                      ++|+++ .+|.   .....++.|++..|.+.+
T Consensus        87 ~~n~l~-~l~~---~~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          87 SKNQLK-ELPE---KMPKTLQELRVHENEITK  114 (305)
T ss_dssp             CSSCCS-BCCS---SCCTTCCEEECCSSCCCB
T ss_pred             cCCccC-cCcc---chhhhhhhhhccccchhh
Confidence            777776 4432   334556666666665553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.5e-24  Score=205.89  Aligned_cols=215  Identities=20%  Similarity=0.205  Sum_probs=174.9

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECC-CCCCCCCcchhhcCCCCCCeEe
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIG-GNRFLQLPSTSMGNLCNLHSLD  464 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  464 (636)
                      +.+++|++++|+++...+..|..+++|++|++++|++.+..+..+..++.++.++.. .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467888888888877666778888888888888888887777777778888888764 5567777777788888888888


Q ss_pred             CcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcC
Q 037514          465 ISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSF  544 (636)
Q Consensus       465 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~  544 (636)
                      +++|.+....+..+.     ...+|+.+++++|++++..+..|..+++|+.|++++|++.+..+..|.++++|+++++++
T Consensus       112 l~~n~~~~~~~~~~~-----~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         112 LDRCGLQELGPGLFR-----GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CTTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCCcccccccccccc-----hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            888887655444333     236678999999999876677888899999999999999887788899999999999999


Q ss_pred             ccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCccccccccccc
Q 037514          545 NVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIA  608 (636)
Q Consensus       545 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~  608 (636)
                      |++++..|..|..+++|++|++++|++.+ ++...|..+++|++|++++|  +..|+|...|..
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N--~l~C~C~~~~l~  247 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN--PWVCDCRARPLW  247 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSS--CEECSGGGHHHH
T ss_pred             ccccccChhHhhhhhhccccccccccccc-ccccccccccccCEEEecCC--CCCCCccchHHH
Confidence            99999999999999999999999999984 67777999999999999999  455666655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-23  Score=203.23  Aligned_cols=226  Identities=21%  Similarity=0.224  Sum_probs=176.9

Q ss_pred             EccCCCCCcCCChhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEcc-CC
Q 037514          342 AINDCQLGSAFPSWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLG-GN  420 (636)
Q Consensus       342 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~-~n  420 (636)
                      +.+++++. .+|..+.  +++++|+|++|++++..+.+|.++  +.|++|++++|++....+..+..++.++.+... .+
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcc--cccccccccccccccccccccccccccccccccccc
Confidence            33444444 3444332  467888888888877776777777  788888888888877777777778888887765 45


Q ss_pred             cCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCC
Q 037514          421 NLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLG  500 (636)
Q Consensus       421 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  500 (636)
                      .+....+..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+..     .+.|+.|++++|+++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-----~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----LGNLTHLFLHGNRIS  166 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCC
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-----ccchhhcccccCccc
Confidence            555555777888888888888888888777777888888888888888888666555432     356688999999888


Q ss_pred             CCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh
Q 037514          501 GNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE  577 (636)
Q Consensus       501 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  577 (636)
                      +..+..|.++++|+.+++++|++.+..|..|.++++|++|++++|++.+..+..|..+++|++|++++|++.+..+.
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            77778888899999999999999888888899999999999999999988888888999999999999988765544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=195.94  Aligned_cols=209  Identities=21%  Similarity=0.181  Sum_probs=160.0

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeC
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDI  465 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  465 (636)
                      ..+.+++.+++.++. +|..+.  +++++|+|++|++++..+..|.++++|++|++++|+++.+++  ++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccc
Confidence            345566777777764 344332  467788888888776555677778888888888888776543  567788888888


Q ss_pred             cCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCc
Q 037514          466 SYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFN  545 (636)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  545 (636)
                      ++|++++..+ .+.     .+++|+.|++++|.+.+..+..+..+.+++.|++++|.+.+..+..+..+++++.+++++|
T Consensus        85 s~N~l~~~~~-~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          85 SHNQLQSLPL-LGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CSSCCSSCCC-CTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccc-ccc-----cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            8888764432 222     3467788888888888777777888899999999999998777777888899999999999


Q ss_pred             cccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccC
Q 037514          546 VMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAP  609 (636)
Q Consensus       546 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~  609 (636)
                      ++++..+..|..+++|++|+|++|+++ .+|+++| .+++|+.|++++|  +..|+|...|+..
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~N--p~~CdC~~~~l~~  218 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGN--PWLCNCEILYFRR  218 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSC--CBCCSGGGHHHHH
T ss_pred             cccccCccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCC--CCCCCcchHHHHH
Confidence            999988888999999999999999988 7888754 6889999999999  5566666556543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.9e-22  Score=191.36  Aligned_cols=161  Identities=22%  Similarity=0.213  Sum_probs=105.6

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCC
Q 037514           70 IPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSK  149 (636)
Q Consensus        70 ~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  149 (636)
                      +|+.+.  +++++|+|++|.|++..+.+|.++++|++|+|++|+|+.++.           ++.+++|++|++++|+++.
T Consensus        25 iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-----------~~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----------DGTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------CSCCTTCCEEECCSSCCSS
T ss_pred             eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-----------ccccccccccccccccccc
Confidence            444443  367777777777776555667777777777777777766543           5566777777777777766


Q ss_pred             CCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCC
Q 037514          150 VTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFP  229 (636)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  229 (636)
                      .+.   .+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+++++++|+++ .++...
T Consensus        92 ~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~  167 (266)
T d1p9ag_          92 LPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL  167 (266)
T ss_dssp             CCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTT
T ss_pred             ccc---ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-ccCccc
Confidence            533   5666677777777777766666666666777777777777776655555666667777777777666 333334


Q ss_pred             CCCCCCCCEEEcccccCc
Q 037514          230 PGKMCNLRRLDLAINGFS  247 (636)
Q Consensus       230 ~~~l~~L~~L~L~~n~~~  247 (636)
                      +..+++|++|+|++|+++
T Consensus       168 ~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC
T ss_pred             cccccccceeecccCCCc
Confidence            566666666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.7e-18  Score=171.50  Aligned_cols=139  Identities=21%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhh
Q 037514           78 KKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVV  157 (636)
Q Consensus        78 ~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  157 (636)
                      .++++|||++++++ .+|+.   .++|++|++++|+|+.++.             ...+|++|++++|.++.++.++   
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~-------------~~~~L~~L~l~~n~l~~l~~lp---   97 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPE-------------LPQSLKSLLVDNNNLKALSDLP---   97 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCC-------------CCTTCCEEECCSSCCSCCCSCC---
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccccc-------------chhhhhhhhhhhcccchhhhhc---
Confidence            37899999999998 57753   5789999999999997653             1358999999999998875422   


Q ss_pred             CCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCC
Q 037514          158 NELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLR  237 (636)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  237 (636)
                         +.|++|++++|.+... | .+..+++|++|+++++.+.. .+.   ....+..+.+.++.....   ..+..++.++
T Consensus        98 ---~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~~~---~~l~~l~~l~  165 (353)
T d1jl5a_          98 ---PLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL---PELQNLPFLT  165 (353)
T ss_dssp             ---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CCCTTCTTCC
T ss_pred             ---cccccccccccccccc-c-chhhhccceeeccccccccc-ccc---ccccccchhhcccccccc---ccccccccce
Confidence               4699999999998864 3 35789999999999998876 332   346677888877766532   2367888999


Q ss_pred             EEEcccccCcc
Q 037514          238 RLDLAINGFSG  248 (636)
Q Consensus       238 ~L~L~~n~~~~  248 (636)
                      .+++++|....
T Consensus       166 ~L~l~~n~~~~  176 (353)
T d1jl5a_         166 AIYADNNSLKK  176 (353)
T ss_dssp             EEECCSSCCSS
T ss_pred             ecccccccccc
Confidence            99999887654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=6.8e-18  Score=169.51  Aligned_cols=153  Identities=27%  Similarity=0.277  Sum_probs=91.9

Q ss_pred             cCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCC
Q 037514          406 LCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACN  485 (636)
Q Consensus       406 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  485 (636)
                      +..++.|+.+++++|.... .+.   ...++..+.+..+.+.....    ....+...++..+.+.+. ...        
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~l-~~l--------  262 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGL-SEL--------  262 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEE-SCC--------
T ss_pred             ccccccccccccccccccc-ccc---cccccccccccccccccccc----cccccccccccccccccc-ccc--------
Confidence            4556777777777766542 222   23456677777776654332    234556666665554321 110        


Q ss_pred             CCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEE
Q 037514          486 VSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLD  565 (636)
Q Consensus       486 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  565 (636)
                      .......++..+.+.+.    ...+++|++|+|++|++. .+|..   +++|+.|++++|+++. +|+   .+++|++|+
T Consensus       263 ~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~  330 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLH  330 (353)
T ss_dssp             CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCc-ccc---ccCCCCEEE
Confidence            12235566666665522    233567888888888877 55643   5678888888888875 343   245788888


Q ss_pred             CcCCcceeecChhhhcCCCCCCeeeCC
Q 037514          566 LYGNSWEGVITEKHFRNLSGLDYLTIS  592 (636)
Q Consensus       566 L~~n~l~~~~~~~~~~~l~~L~~L~ls  592 (636)
                      +++|+++ .+|+    -..+|+.|.+.
T Consensus       331 L~~N~L~-~lp~----~~~~L~~L~~~  352 (353)
T d1jl5a_         331 VEYNPLR-EFPD----IPESVEDLRMN  352 (353)
T ss_dssp             CCSSCCS-SCCC----CCTTCCEEECC
T ss_pred             CcCCcCC-CCCc----cccccCeeECc
Confidence            8888876 5665    23467777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-21  Score=198.54  Aligned_cols=93  Identities=19%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             hhCCCCCCCEEEccCCcCCC----CCCcCccCCCCCCEEEccCCcCCcC----CCcccc-CCCCCCEEeCcCCcCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNF----PQSLPFLNFTSLSILELSYDNFNSQ----IPQWLF-NISTLVTLNLRSSQLSGSIP  226 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~p~~l~-~l~~L~~L~L~~n~l~~~~p  226 (636)
                      .+..++++++|+|++|.++.    .+..++..+++|++|+|++|.++..    +...+. ...+|++|++++|++++.--
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            33444555555555554431    1122334455555555555555321    111111 12356666666666542100


Q ss_pred             -CC--CCCCCCCCCEEEcccccCcc
Q 037514          227 -KF--PPGKMCNLRRLDLAINGFSG  248 (636)
Q Consensus       227 -~~--~~~~l~~L~~L~L~~n~~~~  248 (636)
                       .+  .+..+++|++|++++|.+..
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ccccchhhccccccccccccccchh
Confidence             00  14556666777776666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.4e-21  Score=199.30  Aligned_cols=67  Identities=21%  Similarity=0.197  Sum_probs=34.8

Q ss_pred             hhCCCCCCCEEEccCCcCCCC----CCcCcc-CCCCCCEEEccCCcCCcC----CCccccCCCCCCEEeCcCCcCC
Q 037514          156 VVNELPSLVELHLSNCQLNFP----QSLPFL-NFTSLSILELSYDNFNSQ----IPQWLFNISTLVTLNLRSSQLS  222 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~  222 (636)
                      .+..+++|++|+|++|.++..    +...+. ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        50 ~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            444555555555555554310    111121 223566666666666542    2344556667777777777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=8.3e-18  Score=157.35  Aligned_cols=190  Identities=21%  Similarity=0.301  Sum_probs=156.1

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      +..+++|++|++++|+|+. ++ .+.++++|++|++++|.++++.+           +.++++|+++++++|.++.+   
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~-----------l~~l~~l~~l~~~~n~~~~i---  100 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITELELSGNPLKNV---  100 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCEEECCSCCCSCC---
T ss_pred             HHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc-----------cccccccccccccccccccc---
Confidence            4567899999999999985 43 58999999999999999988654           88999999999999999877   


Q ss_pred             hhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCC
Q 037514          154 LQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKM  233 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  233 (636)
                       ..+.++++|++++++++...+..  .+...+.++.+.++++.+...  ..+.+.++|++|++++|.+.+.   .+++++
T Consensus       101 -~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~---~~l~~l  172 (227)
T d1h6ua2         101 -SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL---TPLANL  172 (227)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGTTC
T ss_pred             -ccccccccccccccccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc---hhhccc
Confidence             35788999999999999876543  466788999999999888763  3477889999999999988743   237889


Q ss_pred             CCCCEEEcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCC
Q 037514          234 CNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLN  313 (636)
Q Consensus       234 ~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~  313 (636)
                      ++|++|++++|.+++..                             .++.+++|++|++++|++++ ++  .++++++|+
T Consensus       173 ~~L~~L~Ls~n~l~~l~-----------------------------~l~~l~~L~~L~Ls~N~lt~-i~--~l~~l~~L~  220 (227)
T d1h6ua2         173 SKLTTLKADDNKISDIS-----------------------------PLASLPNLIEVHLKNNQISD-VS--PLANTSNLF  220 (227)
T ss_dssp             TTCCEEECCSSCCCCCG-----------------------------GGGGCTTCCEEECTTSCCCB-CG--GGTTCTTCC
T ss_pred             ccceecccCCCccCCCh-----------------------------hhcCCCCCCEEECcCCcCCC-Cc--ccccCCCCC
Confidence            99999999999876421                             24556789999999999887 44  388999999


Q ss_pred             EEEccC
Q 037514          314 SLYLSS  319 (636)
Q Consensus       314 ~L~L~~  319 (636)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            999863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1e-17  Score=156.67  Aligned_cols=207  Identities=21%  Similarity=0.301  Sum_probs=160.1

Q ss_pred             CcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEE
Q 037514          361 SVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALD  440 (636)
Q Consensus       361 ~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  440 (636)
                      ++..++++.+++++..+  ...+  .+|++|++.+|.++..  ..+..+++|++|++++|++++..+  +..++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~~--~~~l--~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~   91 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVT--QADL--DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE   91 (227)
T ss_dssp             HHHHHHTTCSSTTSEEC--HHHH--HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred             HHHHHHhCCCCcCCcCC--HHHc--CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccc
Confidence            34456667777776553  3344  6899999999988754  357889999999999999875433  78889999999


Q ss_pred             CCCCCCCCCcchhhcCCCCCCeEeCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCCCCCEEeCcC
Q 037514          441 IGGNRFLQLPSTSMGNLCNLHSLDISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLLCLEYLGLSE  520 (636)
Q Consensus       441 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (636)
                      +++|.++.+.  .+..+++|+.++++++...+..+-     .  ..+.++.+.++++.+...  ..+.++++|+.|++++
T Consensus        92 ~~~n~~~~i~--~l~~l~~L~~l~l~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2          92 LSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPL-----A--GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGN  160 (227)
T ss_dssp             CCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGGG-----T--TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCS
T ss_pred             cccccccccc--cccccccccccccccccccccchh-----c--cccchhhhhchhhhhchh--hhhccccccccccccc
Confidence            9999888654  377899999999999887654321     1  236678999998888743  3467788999999999


Q ss_pred             CccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCC
Q 037514          521 NSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISS  593 (636)
Q Consensus       521 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~  593 (636)
                      |.+.+..  .+.++++|++|++++|++++..  .+.++++|++|++++|++++ ++.  ++++++|++|++++
T Consensus       161 n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         161 AQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEE
T ss_pred             cccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEeeC
Confidence            9887433  3788999999999999998753  37889999999999999885 553  78999999999863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.8e-17  Score=149.78  Aligned_cols=149  Identities=23%  Similarity=0.298  Sum_probs=128.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhh
Q 037514           76 SLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQ  155 (636)
Q Consensus        76 ~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  155 (636)
                      .+..|++|++++|.+++..  .+.++++|++|++++|+++++++           ++.+++|++|++++|+++.++    
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~-----------~~~l~~L~~L~l~~n~i~~l~----  106 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-----------LANLKNLGWLFLDENKVKDLS----  106 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCGG----
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc-----------cccCccccccccccccccccc----
Confidence            4678999999999998543  48899999999999999988764           788999999999999998763    


Q ss_pred             hhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCC
Q 037514          156 VVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCN  235 (636)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  235 (636)
                      .+..+++|+.|++++|.+...  ..+..+++++.+++++|.+++  +..+..+++|+++++++|++.+ ++  ++.++++
T Consensus       107 ~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~  179 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV--PLAGLTK  179 (210)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTT
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccc-cc--cccCCCC
Confidence            588899999999999988643  358889999999999999986  4457889999999999999984 33  3789999


Q ss_pred             CCEEEcccccCcc
Q 037514          236 LRRLDLAINGFSG  248 (636)
Q Consensus       236 L~~L~L~~n~~~~  248 (636)
                      |++|++++|+++.
T Consensus       180 L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         180 LQNLYLSKNHISD  192 (210)
T ss_dssp             CCEEECCSSCCCB
T ss_pred             CCEEECCCCCCCC
Confidence            9999999998863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=3.3e-18  Score=155.30  Aligned_cols=161  Identities=21%  Similarity=0.234  Sum_probs=110.5

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCC-CCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSG-MLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKL  147 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  147 (636)
                      .+|+.+.  +++++|+|++|.|++ ..+..|+++++|++|++++|.+..++.+.         +..+++|++|++++|++
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~---------~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA---------FEGASHIQELQLGENKI   90 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT---------TTTCTTCCEEECCSCCC
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc---------cccccccceeeeccccc
Confidence            3555443  588889999998875 44566788889999999888888776543         77788888888888888


Q ss_pred             CCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCC
Q 037514          148 SKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPK  227 (636)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  227 (636)
                      +.++.  ++|.++++|++|+|++|+++++.+.+|..+++|++|+|++|.+....... .-...++.+.+..+.+....| 
T Consensus        91 ~~l~~--~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p-  166 (192)
T d1w8aa_          91 KEISN--KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP-  166 (192)
T ss_dssp             CEECS--SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS-
T ss_pred             cccCH--HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCC-
Confidence            87743  56788888888888888888777778888888888888888776532211 111234455555565554333 


Q ss_pred             CCCCCCCCCCEEEcccccCc
Q 037514          228 FPPGKMCNLRRLDLAINGFS  247 (636)
Q Consensus       228 ~~~~~l~~L~~L~L~~n~~~  247 (636)
                         ..+..++.++++.+.+.
T Consensus       167 ---~~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 ---SKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ---TTTTTSBGGGSCTTTCC
T ss_pred             ---hhhcCCEeeecCHhhCc
Confidence               23445555566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.6e-17  Score=149.87  Aligned_cols=183  Identities=20%  Similarity=0.249  Sum_probs=146.2

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      ...++..+.+.+.++.  ..+.+|++|++++|.++++..           +..+++|++|++++|++++++    .++.+
T Consensus        27 i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~~-----------l~~l~~L~~L~L~~n~i~~l~----~~~~l   89 (210)
T d1h6ta2          27 IKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG-----------IQYLPNVTKLFLNGNKLTDIK----PLANL   89 (210)
T ss_dssp             HHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCTT-----------GGGCTTCCEEECCSSCCCCCG----GGTTC
T ss_pred             HHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCchh-----------HhhCCCCCEEeCCCccccCcc----ccccC
Confidence            3446666777655442  457889999999999987653           778999999999999998874    46789


Q ss_pred             CCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEE
Q 037514          161 PSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLD  240 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  240 (636)
                      ++|++|++++|+++...  .+.++++|+.|++++|.+..  ...+.++++++.+++++|.+.+. +  .+..+++|++++
T Consensus        90 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~-~--~~~~l~~L~~l~  162 (210)
T d1h6ta2          90 KNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLS  162 (210)
T ss_dssp             TTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEE
T ss_pred             ccccccccccccccccc--cccccccccccccccccccc--ccccccccccccccccccccccc-c--cccccccccccc
Confidence            99999999999988643  58889999999999998876  34688999999999999988742 2  367889999999


Q ss_pred             cccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEEEccC
Q 037514          241 LAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSLYLSS  319 (636)
Q Consensus       241 L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L~~  319 (636)
                      +++|++++..                             .++++++|++|++++|++++ ++  .+..+++|+.|++++
T Consensus       163 l~~n~l~~i~-----------------------------~l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV-----------------------------PLAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG-----------------------------GGTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEEEEE
T ss_pred             cccccccccc-----------------------------cccCCCCCCEEECCCCCCCC-Ch--hhcCCCCCCEEEccC
Confidence            9999876421                             24556789999999999886 54  488999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.3e-16  Score=145.64  Aligned_cols=150  Identities=25%  Similarity=0.374  Sum_probs=130.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChh
Q 037514           75 YSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWL  154 (636)
Q Consensus        75 ~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  154 (636)
                      ..++++++|++++++++..  +.++.+++|++|++++|+++++++           +.++++|++|++++|.+..++   
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~-----------l~~l~~L~~L~l~~n~~~~~~---  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP-----------LKNLTKLVDILMNNNQIADIT---  100 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG---
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc-----------ccCCccccccccccccccccc---
Confidence            3567999999999999853  358999999999999999988764           889999999999999998873   


Q ss_pred             hhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCC
Q 037514          155 QVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMC  234 (636)
Q Consensus       155 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  234 (636)
                       .+.++++|++|++++|.....  ..+..+++|+.|++++|.+.. + ..+..+++|++|++.+|++++ ++  ++++++
T Consensus       101 -~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~  172 (199)
T d2omxa2         101 -PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK--PLANLT  172 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG--GGTTCT
T ss_pred             -ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc--cccCCC
Confidence             588999999999999988754  347889999999999999976 3 468899999999999999984 33  378999


Q ss_pred             CCCEEEcccccCcc
Q 037514          235 NLRRLDLAINGFSG  248 (636)
Q Consensus       235 ~L~~L~L~~n~~~~  248 (636)
                      +|++|++++|++++
T Consensus       173 ~L~~L~ls~N~i~~  186 (199)
T d2omxa2         173 TLERLDISSNKVSD  186 (199)
T ss_dssp             TCCEEECCSSCCCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=157.92  Aligned_cols=203  Identities=15%  Similarity=0.088  Sum_probs=140.5

Q ss_pred             CCccEEECccCcCCccCCcccCCCCCCcEEEccCCcCCccc-CCCCCCCCCCCEEECCC-CCCCCCcchhhcCCCCCCeE
Q 037514          386 QKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGNNLSGEL-STSLPDCSRLTALDIGG-NRFLQLPSTSMGNLCNLHSL  463 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  463 (636)
                      +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++++.. |.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46777788777776655666777888888888888776543 34567778888887654 56777777777888888888


Q ss_pred             eCcCCcCCCchhhhHHhhhcCCCCcccEEEcccCcCCCCCchhhcCCC-CCCEEeCcCCccCCccChhhhCCCCCCeE-e
Q 037514          464 DISYNHITGEIKELTNAFSACNVSTLETLDLASNKLGGNLPDSLGNLL-CLEYLGLSENSFLGSLPTSIGNLSHLRAL-Y  541 (636)
Q Consensus       464 ~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L-~  541 (636)
                      ++++|++....+..  ...  .+..+..+...++.+....+..+.+++ .++.|++++|++.+..+.. ...++++++ +
T Consensus       109 ~l~~~~l~~~~~~~--~~~--~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~  183 (242)
T d1xwdc1         109 LISNTGIKHLPDVH--KIH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNL  183 (242)
T ss_dssp             EEESCCCCSCCCCT--TTC--BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEEC
T ss_pred             ccchhhhccccccc--ccc--cccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhcccc
Confidence            88888776432211  111  124445556666677755555666554 7888899888887544443 344555444 5


Q ss_pred             CcCccccccccccccCCCCCCEEECcCCcceeecChhhhcCCCCCCeeeCCCC
Q 037514          542 LSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITEKHFRNLSGLDYLTISSS  594 (636)
Q Consensus       542 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n  594 (636)
                      +++|+++.+.+..|.++++|++|++++|+++ .+|...|.+++.|+.+++...
T Consensus       184 l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         184 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCCC
Confidence            6778888877777888899999999999887 577777888877777776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.2e-16  Score=145.76  Aligned_cols=180  Identities=22%  Similarity=0.302  Sum_probs=143.7

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCC
Q 037514           80 LKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNE  159 (636)
Q Consensus        80 L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  159 (636)
                      +..+.++.+.+++..+  ...+.++++|++++|.+++++.           +..+++|++|++++|++++.+    .+++
T Consensus        20 ~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~~-----------l~~l~nL~~L~Ls~N~l~~~~----~l~~   82 (199)
T d2omxa2          20 KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG-----------VEYLNNLTQINFSNNQLTDIT----PLKN   82 (199)
T ss_dssp             HHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCTT-----------GGGCTTCCEEECCSSCCCCCG----GGTT
T ss_pred             HHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCccc-----------cccCCCcCcCccccccccCcc----cccC
Confidence            3445677777776543  4578899999999999987643           778999999999999998873    4889


Q ss_pred             CCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEE
Q 037514          160 LPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRL  239 (636)
Q Consensus       160 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  239 (636)
                      +++|++|++++|.+....  .+.++++|+.|+++++.+..  ...+.++++|+.|++++|++. .++  .+..+++|+.|
T Consensus        83 l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L  155 (199)
T d2omxa2          83 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQL  155 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEE
T ss_pred             Cccccccccccccccccc--cccccccccccccccccccc--ccccchhhhhHHhhhhhhhhc-ccc--ccccccccccc
Confidence            999999999999887643  47899999999999998876  345788999999999999887 333  27888999999


Q ss_pred             EcccccCccccchhhhccccCCcccchhhccCcCcccccccccCCCCCCEEEccCCcCccccChhhhcCCCCCCEE
Q 037514          240 DLAINGFSGEKEQFIQTLSGCNNSTLETLETQRMNGTISENIGQLAELVALNLYRNSWKGIITENHFQNLTKLNSL  315 (636)
Q Consensus       240 ~L~~n~~~~~~~~~l~~l~~~~~~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L  315 (636)
                      ++.+|.+++..                             .++++++|++|++++|++++ ++  .+..+++|++|
T Consensus       156 ~l~~n~l~~l~-----------------------------~l~~l~~L~~L~ls~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDLK-----------------------------PLANLTTLERLDISSNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCG-----------------------------GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEE
T ss_pred             ccccccccCCc-----------------------------cccCCCCCCEEECCCCCCCC-Cc--cccCCCCCCcC
Confidence            99999876421                             24567799999999999886 43  47888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.1e-16  Score=145.08  Aligned_cols=108  Identities=27%  Similarity=0.326  Sum_probs=70.3

Q ss_pred             cccEEEcccCcCCCC-CchhhcCCCCCCEEeCcCCccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEEC
Q 037514          488 TLETLDLASNKLGGN-LPDSLGNLLCLEYLGLSENSFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDL  566 (636)
Q Consensus       488 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  566 (636)
                      ++++|+|++|++++. .+..|.++++|+.|+|++|.+.+..+..+..+++|++|++++|+++.+.+..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            446666666666542 2345566667777777777666666666666667777777777776666666666777777777


Q ss_pred             cCCcceeecChhhhcCCCCCCeeeCCCCCC
Q 037514          567 YGNSWEGVITEKHFRNLSGLDYLTISSSNS  596 (636)
Q Consensus       567 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~  596 (636)
                      ++|+++ .+|.++|..+++|+++++++|+.
T Consensus       110 ~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         110 YDNQIS-CVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCC-EECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCcccc-ccCHHHhcCCccccccccccccc
Confidence            777766 35555666667777777777643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.1e-16  Score=145.25  Aligned_cols=220  Identities=20%  Similarity=0.183  Sum_probs=124.7

Q ss_pred             CEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccCccccchhhhccccCCcccchh
Q 037514          188 SILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGFSGEKEQFIQTLSGCNNSTLET  267 (636)
Q Consensus       188 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~L~~  267 (636)
                      ++++.++..++. +|..+.  +++++|++++|+++ .+|...|.++++|++|++++|.+...++                
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~----------------   70 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIE----------------   70 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEEC----------------
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceee----------------
Confidence            577777777775 665553  57888888888887 5665557788888888888877654322                


Q ss_pred             hccCcCcccccccccCCCCCCEEEccC-CcCccccChhhhcCCCCCCEEEccCCCCccEEecCCCCCCCCCccEEEccCC
Q 037514          268 LETQRMNGTISENIGQLAELVALNLYR-NSWKGIITENHFQNLTKLNSLYLSSSNKSLVFTMRSDWIPPFSLRQMAINDC  346 (636)
Q Consensus       268 L~~~~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~~  346 (636)
                                +..+..++.++++.+.. |.+.. ++...|..+++|+.+++++|.                         
T Consensus        71 ----------~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~L~~l~l~~~~-------------------------  114 (242)
T d1xwdc1          71 ----------ADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTG-------------------------  114 (242)
T ss_dssp             ----------SSSEESCTTCCEEEEECCTTCCE-ECTTSEECCTTCCEEEEESCC-------------------------
T ss_pred             ----------ccccccccccccccccccccccc-cccccccccccccccccchhh-------------------------
Confidence                      12344555777777654 34444 444467777777777777662                         


Q ss_pred             CCCcCCC-hhhcCCCCcceeccccccCCCcchhhHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEE-EccCCcCCc
Q 037514          347 QLGSAFP-SWLKTQASVFKLTLSNAAISDTIPDWFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWL-RLGGNNLSG  424 (636)
Q Consensus       347 ~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~  424 (636)
                       +....+ ..+..+..+..+...++.+....+..+.+.. ..++.+++++|+++...+..+. .++++++ ++.+|+++.
T Consensus       115 -l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~  191 (242)
T d1xwdc1         115 -IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEE  191 (242)
T ss_dssp             -CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB-SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCC
T ss_pred             -hccccccccccccccccccccccccccccccccccccc-ccceeeeccccccccccccccc-chhhhcccccccccccc
Confidence             211111 1122223333333333344433333333321 3566666666666544433332 3444333 445556654


Q ss_pred             ccCCCCCCCCCCCEEECCCCCCCCCcchhhcCCCCCCeEeCc
Q 037514          425 ELSTSLPDCSRLTALDIGGNRFLQLPSTSMGNLCNLHSLDIS  466 (636)
Q Consensus       425 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  466 (636)
                      ..+..|.++++|++|++++|+++.+++..|.++++|+.+++.
T Consensus       192 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            434456667777777777777776666556666655555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-15  Score=131.78  Aligned_cols=127  Identities=17%  Similarity=0.244  Sum_probs=80.5

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCCh
Q 037514           74 VYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNW  153 (636)
Q Consensus        74 ~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  153 (636)
                      |.+...+++|+|++|+|+. ++..+..+++|++|++++|.|+.++.           +..+++|++|++++|.++.++. 
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~~-----------~~~l~~L~~L~ls~N~i~~l~~-   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG-----------FPLLRRLKTLLVNNNRICRIGE-   80 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEECC-----------CCCCSSCCEEECCSSCCCEECS-
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccCC-----------cccCcchhhhhcccccccCCCc-
Confidence            4566678888888888874 45556778888888888888876532           6677777777777777776643 


Q ss_pred             hhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCc----cccCCCCCCEEe
Q 037514          154 LQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQ----WLFNISTLVTLN  215 (636)
Q Consensus       154 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~----~l~~l~~L~~L~  215 (636)
                       ..+..+++|++|++++|++..... ..+..+++|++|++++|.++. .|.    .+..+++|++||
T Consensus        81 -~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          81 -GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             -CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             -cccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence             344556667777777766654322 334555566666666655544 221    244455555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=147.66  Aligned_cols=181  Identities=22%  Similarity=0.244  Sum_probs=110.4

Q ss_pred             CCccEEECccCcCCcc-CCcccCCCCCCcEEEccCCcCCcccCCCCCCCCCCCEEECCCC-CCCCCc-chhhcCCCCCCe
Q 037514          386 QKLSVIDLSNNKFFGG-ILSSLCSLPSLYWLRLGGNNLSGELSTSLPDCSRLTALDIGGN-RFLQLP-STSMGNLCNLHS  462 (636)
Q Consensus       386 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~  462 (636)
                      .+|++|+++++.++.. +...+..+++|++|++++|.+.+..+..+..+++|++|++++| .++... ......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4677777777766543 2334566777777777777766555556666777777777775 344221 122345777777


Q ss_pred             EeCcCCc-CCCchhhhHHhhhcCCCCcccEEEcccCc--CCCC-CchhhcCCCCCCEEeCcCCc-cCCccChhhhCCCCC
Q 037514          463 LDISYNH-ITGEIKELTNAFSACNVSTLETLDLASNK--LGGN-LPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNLSHL  537 (636)
Q Consensus       463 L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L  537 (636)
                      |++++|. +++.   .+........+.|+.|+++++.  ++.. +.....++++|++|++++|. +++.....+..+++|
T Consensus       126 L~ls~c~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         126 LNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             EECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccccccccccc---cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            7777763 3321   1111111113567777777652  3321 22334567778888887764 555566667777788


Q ss_pred             CeEeCcCc-cccccccccccCCCCCCEEECcCC
Q 037514          538 RALYLSFN-VMSRIISENIGQLSEPYMLDLYGN  569 (636)
Q Consensus       538 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n  569 (636)
                      ++|++++| .+++.....+.++++|+.|++++|
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            88888775 566655566777778888888777

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=3e-15  Score=149.31  Aligned_cols=244  Identities=20%  Similarity=0.178  Sum_probs=155.3

Q ss_pred             CChhhcCCCCcceeccccccCCCcchhhHHhhc--CCCccEEECccCcCCcc----------CCcccCCCCCCcEEEccC
Q 037514          352 FPSWLKTQASVFKLTLSNAAISDTIPDWFWGVI--SQKLSVIDLSNNKFFGG----------ILSSLCSLPSLYWLRLGG  419 (636)
Q Consensus       352 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~--~~~L~~L~ls~n~l~~~----------~~~~~~~l~~L~~L~L~~  419 (636)
                      +...+....+++.|++++|.+.......+....  .++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344556667777777777776654444433221  16777777776644211          123345677888888888


Q ss_pred             CcCCcc----cCCCCCCCCCCCEEECCCCCCCCCcchh-------------hcCCCCCCeEeCcCCcCCCchhhhHHh-h
Q 037514          420 NNLSGE----LSTSLPDCSRLTALDIGGNRFLQLPSTS-------------MGNLCNLHSLDISYNHITGEIKELTNA-F  481 (636)
Q Consensus       420 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~-~  481 (636)
                      |.+...    +...+..+++|++|++++|.+.......             ....+.|+.+++++|++.......+.. +
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            877643    2233445678888888888764321111             135678888888888876443333322 2


Q ss_pred             hcCCCCcccEEEcccCcCCCC-----CchhhcCCCCCCEEeCcCCccCCc----cChhhhCCCCCCeEeCcCcccccccc
Q 037514          482 SACNVSTLETLDLASNKLGGN-----LPDSLGNLLCLEYLGLSENSFLGS----LPTSIGNLSHLRALYLSFNVMSRIIS  552 (636)
Q Consensus       482 ~~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~  552 (636)
                      ..  .+.|++|++++|+++..     +...+..+++|+.|++++|.+...    +...+..+++|++|++++|.+++...
T Consensus       183 ~~--~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         183 QS--HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HH--CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hh--hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            22  26788999998888732     234467788899999999887532    34556788889999999998876432


Q ss_pred             c----ccc--CCCCCCEEECcCCcceeec----ChhhhcCCCCCCeeeCCCCCCC
Q 037514          553 E----NIG--QLSEPYMLDLYGNSWEGVI----TEKHFRNLSGLDYLTISSSNSS  597 (636)
Q Consensus       553 ~----~~~--~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~ls~n~~~  597 (636)
                      .    .+.  ..+.|++|++++|++....    ......+.+.|++|++++|.+.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2    232  2467899999999875432    2222235778999999998654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.9e-15  Score=141.44  Aligned_cols=204  Identities=20%  Similarity=0.202  Sum_probs=122.2

Q ss_pred             CCcceeccccccCCCcchh-hHHhhcCCCccEEECccCcCCccCCcccCCCCCCcEEEccCC-cCCcc-cCCCCCCCCCC
Q 037514          360 ASVFKLTLSNAAISDTIPD-WFWGVISQKLSVIDLSNNKFFGGILSSLCSLPSLYWLRLGGN-NLSGE-LSTSLPDCSRL  436 (636)
Q Consensus       360 ~~L~~L~L~~n~~~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L  436 (636)
                      .+|++|+++++.+.+.... .+...  ++|++|+++++.+++..+..+..+++|++|++++| .++.. +.....++++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c--~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQC--SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTB--CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhC--CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3455555555555433222 23333  56666666666665555556666777777777775 33321 11223457788


Q ss_pred             CEEECCCCC-CCCC-cchhh-cCCCCCCeEeCcCCc--CCCchhhhHHhh-hcCCCCcccEEEcccC-cCCCCCchhhcC
Q 037514          437 TALDIGGNR-FLQL-PSTSM-GNLCNLHSLDISYNH--ITGEIKELTNAF-SACNVSTLETLDLASN-KLGGNLPDSLGN  509 (636)
Q Consensus       437 ~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~l~~n~--l~~~~~~~~~~~-~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~  509 (636)
                      ++|++++|. ++.. ....+ ..+++|+.|+++++.  ++..   .+..+ ..  +++|++|++++| .+++.....+.+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~~l~~~--~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccc---cccccccc--cccccccccccccCCCchhhhhhcc
Confidence            888888864 3321 11122 345788888888763  3321   12221 22  378899999886 467667777888


Q ss_pred             CCCCCEEeCcCC-ccCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCccee
Q 037514          510 LLCLEYLGLSEN-SFLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEG  573 (636)
Q Consensus       510 l~~L~~L~Ls~n-~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  573 (636)
                      +++|++|++++| .+++.....+..+++|+.|+++++--.+..+.....+++|+   +..+++++
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~  260 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT  260 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCC
Confidence            999999999996 56666666788889999999988822222223234455554   45555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.1e-14  Score=118.90  Aligned_cols=103  Identities=26%  Similarity=0.365  Sum_probs=66.8

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCC
Q 037514           81 KLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNEL  160 (636)
Q Consensus        81 ~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  160 (636)
                      |+|+|++|+++ .++ .++++++|++|++++|+|++++..          ++.+++|++|++++|.++.++    .+..+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~----------~~~l~~L~~L~l~~N~i~~l~----~~~~l   64 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPA----------LAALRCLEVLQASDNALENVD----GVANL   64 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGG----------GGGCTTCCEEECCSSCCCCCG----GGTTC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhh----------hhhhhcccccccccccccccC----ccccc
Confidence            56788888887 334 377788888888888887776532          666677777777777776652    35666


Q ss_pred             CCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCc
Q 037514          161 PSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNS  199 (636)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~  199 (636)
                      ++|++|++++|++..... ..+..+++|++|++++|.+++
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            666666666666654332 345556666666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2e-14  Score=119.05  Aligned_cols=102  Identities=25%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             CEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCC
Q 037514          105 QYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNF  184 (636)
Q Consensus       105 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  184 (636)
                      |+|++++|+++.++.           +..+++|++|++++|.++.+|   ..++.+++|++|++++|.++.. + .+.++
T Consensus         1 R~L~Ls~n~l~~l~~-----------l~~l~~L~~L~ls~N~l~~lp---~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l   64 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNALENV-D-GVANL   64 (124)
T ss_dssp             SEEECTTSCCSSCCC-----------GGGGTTCCEEECCSSCCCCCC---GGGGGCTTCCEEECCSSCCCCC-G-GGTTC
T ss_pred             CEEEcCCCCCCCCcc-----------cccCCCCCEEECCCCccCcch---hhhhhhhccccccccccccccc-C-ccccc
Confidence            567777777776542           666667777777777776654   2566667777777777766653 2 36666


Q ss_pred             CCCCEEEccCCcCCcCC-CccccCCCCCCEEeCcCCcCC
Q 037514          185 TSLSILELSYDNFNSQI-PQWLFNISTLVTLNLRSSQLS  222 (636)
Q Consensus       185 ~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~  222 (636)
                      ++|++|++++|++++.. +..+..+++|++|++++|+++
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            66666666666666522 234566666666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.4e-15  Score=129.03  Aligned_cols=128  Identities=16%  Similarity=0.062  Sum_probs=78.2

Q ss_pred             ccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCC
Q 037514           98 IGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQ  177 (636)
Q Consensus        98 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  177 (636)
                      +.+..++++|+|++|+|+.++..          +..+++|++|++++|.++.++    .+..+++|++|++++|+++...
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~----------~~~l~~L~~L~Ls~N~i~~l~----~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENL----------GATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG----------GGGTTCCSEEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEEC
T ss_pred             ccCcCcCcEEECCCCCCCccCcc----------ccccccCCEEECCCCCCCccC----CcccCcchhhhhcccccccCCC
Confidence            55666777777777777766431          345666777777777766552    3566667777777777766555


Q ss_pred             CcCccCCCCCCEEEccCCcCCcCC-CccccCCCCCCEEeCcCCcCCCCCCCC---CCCCCCCCCEEE
Q 037514          178 SLPFLNFTSLSILELSYDNFNSQI-PQWLFNISTLVTLNLRSSQLSGSIPKF---PPGKMCNLRRLD  240 (636)
Q Consensus       178 ~~~~~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~~l~~L~~L~  240 (636)
                      +..+..+++|++|++++|.+.... ...+..+++|++|++++|.++ ..|..   .+..+++|++||
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            555556667777777766666521 134556666666666666665 33321   144556666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=2e-14  Score=143.11  Aligned_cols=118  Identities=25%  Similarity=0.294  Sum_probs=68.9

Q ss_pred             CCCCCcEEEccCCcCCcc-----cCCCCCCCCCCCEEECCCCCCCCC----cchhhcCCCCCCeEeCcCCcCCCchhhhH
Q 037514          408 SLPSLYWLRLGGNNLSGE-----LSTSLPDCSRLTALDIGGNRFLQL----PSTSMGNLCNLHSLDISYNHITGEIKELT  478 (636)
Q Consensus       408 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  478 (636)
                      ..+.|+.|++++|++...     +...+..+++|++|++++|.++..    ....+..+++|++|++++|.+++.....+
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            345556666666655421     233455566677777777766432    22345567777777777777765433333


Q ss_pred             Hh-hhcCCCCcccEEEcccCcCCCC----Cchhhc-CCCCCCEEeCcCCccCC
Q 037514          479 NA-FSACNVSTLETLDLASNKLGGN----LPDSLG-NLLCLEYLGLSENSFLG  525 (636)
Q Consensus       479 ~~-~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~Ls~n~~~~  525 (636)
                      .. +.....+.|++|++++|+++..    +...+. ++++|+.|+|++|++..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            22 2333345677888888877632    223332 56778888888888753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-13  Score=116.40  Aligned_cols=119  Identities=16%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             CcccEEEcccCcCCCCCchhhcCCCCCCEEeCcCCc-cCCccChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEE
Q 037514          487 STLETLDLASNKLGGNLPDSLGNLLCLEYLGLSENS-FLGSLPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLD  565 (636)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  565 (636)
                      ...+.++.+++++. ..|..+..+++|++|++++|+ +....+..|.++++|+.|++++|+++.+.+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34467888888887 567788899999999998775 7766677899999999999999999999999999999999999


Q ss_pred             CcCCcceeecChhhhcCCCCCCeeeCCCCCCCcccccccccccCc
Q 037514          566 LYGNSWEGVITEKHFRNLSGLDYLTISSSNSSLVFNIRHDWIAPF  610 (636)
Q Consensus       566 L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  610 (636)
                      |++|++. .+|.+.|... +|+.|++++|+  +.|+|...|+..|
T Consensus        87 Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np--~~C~C~~~~l~~~  127 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGL-SLQELVLSGNP--LHCSCALRWLQRW  127 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSC-CCCEEECCSSC--CCCCGGGHHHHHH
T ss_pred             ccCCCCc-ccChhhhccc-cccccccCCCc--ccCCchHHHHHHH
Confidence            9999998 6888888765 79999999994  4667666666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=8.2e-15  Score=132.62  Aligned_cols=115  Identities=21%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             CCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCc
Q 037514           93 MLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQ  172 (636)
Q Consensus        93 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  172 (636)
                      .++.+++.+++|++|+|++|+|+.++.           +.++++|++|++++|.++.++.   .+..+++|++|++++|+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~~-----------l~~l~~L~~L~Ls~N~i~~i~~---~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKISS-----------LSGMENLRILSLGRNLIKKIEN---LDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCCC-----------HHHHTTCCEEECCEEEECSCSS---HHHHHHHCCEEECSEEE
T ss_pred             hhhhHHhcccccceeECcccCCCCccc-----------ccCCccccChhhcccccccccc---ccccccccccccccccc
Confidence            345567777777777777777766532           5666777777777777766543   23334567777777777


Q ss_pred             CCCCCCcCccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEeCcCCcCCC
Q 037514          173 LNFPQSLPFLNFTSLSILELSYDNFNSQIP-QWLFNISTLVTLNLRSSQLSG  223 (636)
Q Consensus       173 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~  223 (636)
                      ++..  ..+.++++|++|++++|+++.... ..+..+++|++|++++|++..
T Consensus       105 i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         105 IASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccc--ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            6643  235666777777777777765211 356677777777777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=7e-15  Score=133.08  Aligned_cols=131  Identities=17%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCcCCCCCcccccccccccccccCCCCCCCCEEecCCccCC
Q 037514           69 PIPEFVYSLKKLKLLDLSESSFSGMLPPNIGNLSNLQYLDLSYQNLKEYQITKELWVSDLIWLPDLSSSRYLHLEGMKLS  148 (636)
Q Consensus        69 ~~p~~~~~l~~L~~L~Ls~~~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  148 (636)
                      .+|..+..+++|++|+|++|+|+. ++ .+..+++|++|++++|.|++++..          ...+++|++|++++|.++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~----------~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENL----------DAVADTLEELWISYNQIA  106 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSH----------HHHHHHCCEEECSEEECC
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccc----------cccccccccccccccccc
Confidence            355678899999999999999985 44 599999999999999999886532          334568999999999999


Q ss_pred             CCCChhhhhCCCCCCCEEEccCCcCCCCCC-cCccCCCCCCEEEccCCcCCcCCCcc----------ccCCCCCCEEe
Q 037514          149 KVTNWLQVVNELPSLVELHLSNCQLNFPQS-LPFLNFTSLSILELSYDNFNSQIPQW----------LFNISTLVTLN  215 (636)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~----------l~~l~~L~~L~  215 (636)
                      .+    ..+..+++|++|++++|+++.... ..+..+++|++|++++|.+....+..          +..+++|+.||
T Consensus       107 ~l----~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         107 SL----SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CH----HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cc----ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            76    357788999999999999986433 46889999999999999887633322          45566777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.3e-11  Score=102.50  Aligned_cols=66  Identities=20%  Similarity=0.160  Sum_probs=26.8

Q ss_pred             cCccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEeCcCCcCCCCCCCCCCCCCCCCCEEEcccccC
Q 037514          179 LPFLNFTSLSILELSYDNFNSQIPQWLFNISTLVTLNLRSSQLSGSIPKFPPGKMCNLRRLDLAINGF  246 (636)
Q Consensus       179 ~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~~  246 (636)
                      .+|.++++|+.|++++|+++...|.+|..+++|++|+|++|+++ .+|...+... +|++|+|++|++
T Consensus        50 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSC-CCCEEECCSSCC
T ss_pred             hhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccc-cccccccCCCcc
Confidence            33444444444444444444433334444444444444444444 3332222222 344444544444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-09  Score=94.43  Aligned_cols=68  Identities=21%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             CCCCCCCEEecCCccCCCCCChhhhhCCCCCCCEEEccCCcCCCCCCcCccCCCCCCEEEccCCcCCc
Q 037514          132 PDLSSSRYLHLEGMKLSKVTNWLQVVNELPSLVELHLSNCQLNFPQSLPFLNFTSLSILELSYDNFNS  199 (636)
Q Consensus       132 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  199 (636)
                      .++++|++|++++|+++.+..+...+..+++|++|+|++|.++...+..+.+..+|+.|++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34566666666666666654444445556666666666666554333223333445555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1e-08  Score=88.57  Aligned_cols=82  Identities=22%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             CCCCCCEEeCcCCccCCc--cChhhhCCCCCCeEeCcCccccccccccccCCCCCCEEECcCCcceeecCh------hhh
Q 037514          509 NLLCLEYLGLSENSFLGS--LPTSIGNLSHLRALYLSFNVMSRIISENIGQLSEPYMLDLYGNSWEGVITE------KHF  580 (636)
Q Consensus       509 ~l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~  580 (636)
                      .+++|++|+|++|+++..  ++..+..+++|+.|++++|+++...+-.+.....|+.|++++|++.+...+      .++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            444555555555555432  123344455555555555555544332222334455555555555533321      234


Q ss_pred             cCCCCCCeee
Q 037514          581 RNLSGLDYLT  590 (636)
Q Consensus       581 ~~l~~L~~L~  590 (636)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=2.6e-06  Score=73.35  Aligned_cols=12  Identities=17%  Similarity=0.243  Sum_probs=5.5

Q ss_pred             CCCCCEEEcccc
Q 037514          233 MCNLRRLDLAIN  244 (636)
Q Consensus       233 l~~L~~L~L~~n  244 (636)
                      .++|+.|+++.+
T Consensus       130 n~sL~~l~l~~~  141 (167)
T d1pgva_         130 NESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCCC
T ss_pred             CCCccEeeCcCC
Confidence            344555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=8.4e-06  Score=69.98  Aligned_cols=17  Identities=12%  Similarity=0.229  Sum_probs=8.2

Q ss_pred             cCCCCCCeEeCcCCcCC
Q 037514          455 GNLCNLHSLDISYNHIT  471 (636)
Q Consensus       455 ~~l~~L~~L~l~~n~l~  471 (636)
                      ...+.|++|++++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          41 CNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCccceeeccccccc
Confidence            34444555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=7.6e-05  Score=63.75  Aligned_cols=17  Identities=6%  Similarity=-0.031  Sum_probs=8.7

Q ss_pred             cCCCCCCeEeCcCCcCC
Q 037514          455 GNLCNLHSLDISYNHIT  471 (636)
Q Consensus       455 ~~l~~L~~L~l~~n~l~  471 (636)
                      ...+.|++|++++|.++
T Consensus        43 ~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCSCCEEECTTSCCC
T ss_pred             hcCCccCeeeccCCccc
Confidence            34455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.27  E-value=0.00013  Score=62.26  Aligned_cols=68  Identities=13%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             cCCCCCCeEeCcC-CcCCCchhhhHH-hhhcCCCCcccEEEcccCcCCCC----CchhhcCCCCCCEEeCcCCccC
Q 037514          455 GNLCNLHSLDISY-NHITGEIKELTN-AFSACNVSTLETLDLASNKLGGN----LPDSLGNLLCLEYLGLSENSFL  524 (636)
Q Consensus       455 ~~l~~L~~L~l~~-n~l~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~  524 (636)
                      ...++|++|++++ +.++...-..+. .+..  .+.|++|++++|.++..    +...+...++++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~--n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT--NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT--CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc--CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3445666666665 334322222121 1221  24556666666655522    1223344455555555555443