Citrus Sinensis ID: 037533
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 297 | ||||||
| 357509983 | 601 | hypothetical protein MTR_7g093450 [Medic | 0.986 | 0.487 | 0.812 | 1e-146 | |
| 225441483 | 659 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.429 | 0.826 | 1e-145 | |
| 224139896 | 571 | predicted protein [Populus trichocarpa] | 0.956 | 0.497 | 0.816 | 1e-145 | |
| 224088182 | 590 | predicted protein [Populus trichocarpa] | 0.993 | 0.5 | 0.784 | 1e-144 | |
| 297739822 | 310 | unnamed protein product [Vitis vinifera] | 0.969 | 0.929 | 0.819 | 1e-144 | |
| 356533119 | 588 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.482 | 0.813 | 1e-143 | |
| 255588210 | 618 | conserved hypothetical protein [Ricinus | 0.993 | 0.477 | 0.784 | 1e-142 | |
| 42567700 | 608 | uncharacterized protein [Arabidopsis tha | 0.979 | 0.478 | 0.790 | 1e-142 | |
| 449501912 | 613 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.466 | 0.793 | 1e-142 | |
| 449437563 | 613 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.466 | 0.793 | 1e-142 |
| >gi|357509983|ref|XP_003625280.1| hypothetical protein MTR_7g093450 [Medicago truncatula] gi|355500295|gb|AES81498.1| hypothetical protein MTR_7g093450 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/294 (81%), Positives = 264/294 (89%), Gaps = 1/294 (0%)
Query: 1 MLELLRGKRLVFVGDSLNRNMWESLVCILKNLAKDPKNVYEANGRSHFRGEASYSFIFKD 60
ML+LLRGKRLVFVGDSLNRNMWESL+CILKN KD K VYEANGR HFRGEASYSF+FKD
Sbjct: 308 MLDLLRGKRLVFVGDSLNRNMWESLICILKNSVKDKKKVYEANGRVHFRGEASYSFVFKD 367
Query: 61 YNCSVEFFVSPFLVQEWEMPEKDGTKKETLRLDLVGRSSDQYKGADIIIFNTGHWWTHDK 120
Y SVE FVSPFLVQEWEMP+K+GTKKETLRLDLVGRSSDQYK ADII+FNTGHWWTHDK
Sbjct: 368 YKFSVELFVSPFLVQEWEMPDKNGTKKETLRLDLVGRSSDQYKDADIIVFNTGHWWTHDK 427
Query: 121 TAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASHFSGGQ 180
T++GKDYYQEGSHVY ELNVLEAFRRA+TTW RWVDANVNP KS+V FRGYSASHFSGGQ
Sbjct: 428 TSKGKDYYQEGSHVYDELNVLEAFRRAITTWGRWVDANVNPTKSIVLFRGYSASHFSGGQ 487
Query: 181 WNSGGACDHETEPIKNKTYLTAYPPKMKVLESVLKGMKTHVTYLNITRLTDYRKDGHPSI 240
WNSGG CDHET PI N+ YLT YPPKM+VLE VLK MK V+YLNITR+TD+RKDGHPSI
Sbjct: 488 WNSGGQCDHETAPIDNEKYLTEYPPKMRVLEKVLKNMKNPVSYLNITRMTDFRKDGHPSI 547
Query: 241 YRKQHISDAERRSPLRYQDCSHWCLPGVPDAWNELFYAELIIKENKMLKHQNSK 294
YRKQ++S ER+SPLR+QDCSHWCLPGVPDAWNE+ YAEL+++E + KHQ +
Sbjct: 548 YRKQNLSPEERKSPLRFQDCSHWCLPGVPDAWNEILYAELLMREYRD-KHQQKR 600
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441483|ref|XP_002280022.1| PREDICTED: uncharacterized protein LOC100255639 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224139896|ref|XP_002323329.1| predicted protein [Populus trichocarpa] gi|222867959|gb|EEF05090.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224088182|ref|XP_002308359.1| predicted protein [Populus trichocarpa] gi|222854335|gb|EEE91882.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297739822|emb|CBI30004.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356533119|ref|XP_003535115.1| PREDICTED: uncharacterized protein LOC100782012 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255588210|ref|XP_002534536.1| conserved hypothetical protein [Ricinus communis] gi|223525091|gb|EEF27846.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|42567700|ref|NP_568173.2| uncharacterized protein [Arabidopsis thaliana] gi|9759298|dbj|BAB09804.1| unnamed protein product [Arabidopsis thaliana] gi|110738760|dbj|BAF01304.1| hypothetical protein [Arabidopsis thaliana] gi|332003669|gb|AED91052.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449501912|ref|XP_004161492.1| PREDICTED: uncharacterized protein LOC101228487 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449437563|ref|XP_004136561.1| PREDICTED: uncharacterized protein LOC101220024 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 297 | ||||||
| TAIR|locus:2170184 | 608 | TBR [Arabidopsis thaliana (tax | 0.979 | 0.478 | 0.790 | 1e-132 | |
| TAIR|locus:2088659 | 556 | TBL1 "AT3G12060" [Arabidopsis | 0.966 | 0.516 | 0.759 | 9.9e-126 | |
| TAIR|locus:2036631 | 541 | TBL2 "AT1G60790" [Arabidopsis | 0.942 | 0.517 | 0.594 | 2e-95 | |
| TAIR|locus:2155874 | 457 | TBL4 "AT5G49340" [Arabidopsis | 0.959 | 0.623 | 0.577 | 5.7e-91 | |
| TAIR|locus:2149947 | 485 | TBL5 "AT5G20590" [Arabidopsis | 0.932 | 0.571 | 0.505 | 1.3e-82 | |
| TAIR|locus:2096094 | 475 | TBL6 "AT3G62390" [Arabidopsis | 0.929 | 0.581 | 0.521 | 1.6e-79 | |
| TAIR|locus:2080389 | 469 | TBL10 "TRICHOME BIREFRINGENCE- | 0.939 | 0.594 | 0.432 | 4.8e-62 | |
| TAIR|locus:2182157 | 464 | TBL11 "TRICHOME BIREFRINGENCE- | 0.936 | 0.599 | 0.433 | 7.1e-61 | |
| TAIR|locus:2080767 | 427 | TBL8 "AT3G11570" [Arabidopsis | 0.922 | 0.641 | 0.411 | 8.4e-58 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.872 | 0.721 | 0.405 | 6.3e-53 |
| TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 230/291 (79%), Positives = 262/291 (90%)
Query: 1 MLELLRGKRLVFVGDSLNRNMWESLVCILKNLAKDPKNVYEANGRSHFRGEASYSFIFKD 60
+LE+LRG+RLVFVGDSLNRNMWESLVCILK KD VYEA GR HFRGEA YSF+F+D
Sbjct: 315 LLEMLRGRRLVFVGDSLNRNMWESLVCILKGSVKDETKVYEARGRHHFRGEAEYSFVFQD 374
Query: 61 YNCSVEFFVSPFLVQEWEMPEKDGTKKETLRLDLVGRSSDQYKGADIIIFNTGHWWTHDK 120
YNC+VEFFVSPFLVQEWE+ +K GTKKETLRLDLVG+SS+QYKGAD+I+FNTGHWWTH+K
Sbjct: 375 YNCTVEFFVSPFLVQEWEIVDKKGTKKETLRLDLVGKSSEQYKGADVIVFNTGHWWTHEK 434
Query: 121 TAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASHFSGGQ 180
T++G+DYYQEGS+VY EL VLEAFR+ALTTW RWV+ NVNP KS+VFFRGYSASHFSGGQ
Sbjct: 435 TSKGEDYYQEGSNVYHELAVLEAFRKALTTWGRWVEKNVNPAKSLVFFRGYSASHFSGGQ 494
Query: 181 WNSGGACDHETEPIKNKTYLTAYPPKMKVLESVLKGMKTHVTYLNITRLTDYRKDGHPSI 240
WNSGGACD ETEPIKN TYLT YP KMKVLE VL+GMKT VTYLNITRLTDYRKDGHPS+
Sbjct: 495 WNSGGACDSETEPIKNDTYLTPYPSKMKVLEKVLRGMKTPVTYLNITRLTDYRKDGHPSV 554
Query: 241 YRKQHISDAERRSPLRYQDCSHWCLPGVPDAWNELFYAELIIKENKMLKHQ 291
YRKQ +S+ E++SPL YQDCSHWCLPGVPD+WNE+ YAELI+K N++ + Q
Sbjct: 555 YRKQSLSEKEKKSPLLYQDCSHWCLPGVPDSWNEILYAELIVKLNQLSQTQ 605
|
|
| TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2149947 TBL5 "AT5G20590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080389 TBL10 "TRICHOME BIREFRINGENCE-LIKE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080767 TBL8 "AT3G11570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 297 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-110 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 8e-82 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = e-110
Identities = 135/283 (47%), Positives = 175/283 (61%), Gaps = 24/283 (8%)
Query: 1 MLELLRGKRLVFVGDSLNRNMWESLVCILKNLAKDPKNVYEANGRSHFRGEASYSFIFKD 60
LE LRGKR+VFVGDSL+RN WESLVC+L + E +GR + F FKD
Sbjct: 9 FLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRL-------FRFRFKD 61
Query: 61 YNCSVEFFVSPFLVQEWEMPEKDGTKKETLRLDLV-GRSSDQYKGADIIIFNTGHWWTHD 119
YN ++EF+ SPFLV+ + K L+LD + + S + GAD+++FN+GHWW H
Sbjct: 62 YNVTIEFYWSPFLVES----DNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWLHR 117
Query: 120 KTAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASHFSGG 179
K G DY Q+ Y E+ L+A+R+AL TWA+WVD N+ P K+ VFFR +S HF GG
Sbjct: 118 KVYIGWDYCQK--SNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFSPVHFEGG 175
Query: 180 QWNSGGACDHETEPIKNKTYLTAYPPKMKVLESVLKG--MKTHVTYLNITRLTDYRKDGH 237
+WN+GG+C +ETEP+ Y P + ++ VL MKT V L+IT L+ YRKDGH
Sbjct: 176 EWNTGGSC-YETEPLLGSEYKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLSQYRKDGH 234
Query: 238 PSIYRKQHISDAERRSPLRYQDCSHWCLPGVPDAWNELFYAEL 280
PS+YRK P + QDC HWCLPGVPD WNEL A L
Sbjct: 235 PSVYRKPG-------PPKKEQDCLHWCLPGVPDTWNELLLALL 270
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 297 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 97.88 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-96 Score=701.94 Aligned_cols=268 Identities=42% Similarity=0.894 Sum_probs=238.7
Q ss_pred CcccccCCcEEEEecccchhHHHHHHHHHhhccCCCCceeecCCccccccCCceEEEEeecceEEEEEEcccceeeccCC
Q 037533 1 MLELLRGKRLVFVGDSLNRNMWESLVCILKNLAKDPKNVYEANGRSHFRGEASYSFIFKDYNCSVEFFVSPFLVQEWEMP 80 (297)
Q Consensus 1 fL~~~RgK~~~FVGDSl~Rnq~eSLlClL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~~n~Tv~~~wspfLV~~~~~~ 80 (297)
|||+|||||||||||||+|||||||+|||++++++..+.+.. ..++.+|+|++||+||+||||||||+.++.
T Consensus 114 fLe~~RgKrl~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~-------~~~~~~~~F~~yN~TV~~ywspfLV~~~~~- 185 (387)
T PLN02629 114 FLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSR-------GDPLSTFKFLDYGVSISFYKAPYLVDIDAV- 185 (387)
T ss_pred HHHHhcCCeEEEeccccchhHHHHHHHHhhccCCCCceeeec-------CCceEEEEeccCCEEEEEEecceEEeeecC-
Confidence 899999999999999999999999999999987755433221 223458999999999999999999997542
Q ss_pred CCCCCccccccccccccchhcCCCCcEEEEccccccccccCCCCcccccCCccccccccHHHHHHHHHHHHHHHHHhhcC
Q 037533 81 EKDGTKKETLRLDLVGRSSDQYKGADIIIFNTGHWWTHDKTAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVN 160 (297)
Q Consensus 81 ~~~~~~~~~l~lD~~~~~~~~~~~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~~i~~~~~ 160 (297)
. ..++|+||.++.++++|+++|||||||||||++++...++.|++.|+.++++|+..+||++||+||++||+++++
T Consensus 186 --~--~~~~l~LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~ 261 (387)
T PLN02629 186 --Q--GKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVD 261 (387)
T ss_pred --C--CceeEEecCcchhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCC
Confidence 1 246899999998899999999999999999999887778899999999999999999999999999999999999
Q ss_pred CCcceEEEEeecCCCCCCCCCCCCC-----CCCcccccCCCCcccCCCChhHHHHHHHHhccCceeEEeecccccccccc
Q 037533 161 PMKSMVFFRGYSASHFSGGQWNSGG-----ACDHETEPIKNKTYLTAYPPKMKVLESVLKGMKTHVTYLNITRLTDYRKD 235 (297)
Q Consensus 161 ~~~~~vf~Rt~SP~Hfe~g~W~~GG-----~C~~~t~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdiT~ls~~R~D 235 (297)
+.+++|||||+||+|||||+||+|| +|+++|+|+.++++.++...+++++++++++++.+|+|||||+||++|||
T Consensus 262 ~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~D 341 (387)
T PLN02629 262 RSRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKD 341 (387)
T ss_pred CCCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCC
Confidence 9999999999999999999999875 59889999998777666777889999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCCCcccccCCCcchHHHHHHHHHHH
Q 037533 236 GHPSIYRKQHISDAERRSPLRYQDCSHWCLPGVPDAWNELFYAELI 281 (297)
Q Consensus 236 gHps~y~~~~~~~~~~~~~~~~~DC~HWCLPG~~D~WNelL~~~L~ 281 (297)
||||+|++. .+++++..|..++||+||||||||||||||||++|+
T Consensus 342 gHPs~Y~~~-~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 342 GHPSIYSGD-LSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred CCcccccCC-CchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence 999999754 334556677778999999999999999999999997
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 297 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 93.37 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.17 Score=42.15 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCCcEEEEccccccccccCCCCcccccCCccccccccHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeecCCC
Q 037533 103 KGADIIIFNTGHWWTHDKTAEGKDYYQEGSHVYGELNVLEAFRRALTTWARWVDANVNPMKSMVFFRGYSASH 175 (297)
Q Consensus 103 ~~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~~i~~~~~~~~~~vf~Rt~SP~H 175 (297)
...|+|||+.|..=. . ...+.|+..|+.+.+.+.+.. .++.+++-+..|-.
T Consensus 73 ~~pd~Vvi~~G~ND~-------------------~-~~~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~~P~~ 123 (200)
T 4h08_A 73 TKFDVIHFNNGLHGF-------------------D-YTEEEYDKSFPKLIKIIRKYA--PKAKLIWANTTPVR 123 (200)
T ss_dssp SCCSEEEECCCSSCT-------------------T-SCHHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCE
T ss_pred CCCCeEEEEeeeCCC-------------------C-CCHHHHHHHHHHHHHHHhhhC--CCccEEEeccCCCc
Confidence 457999999886410 0 113568888888877765442 24568888887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 297 | |||
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 96.86 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 96.37 | |
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 88.44 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 84.87 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 81.49 |
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein Lp3323 species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.86 E-value=0.0026 Score=50.91 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.5
Q ss_pred ccCCcEEEEecccchh
Q 037533 5 LRGKRLVFVGDSLNRN 20 (297)
Q Consensus 5 ~RgK~~~FVGDSl~Rn 20 (297)
+..|||+|+||||+-+
T Consensus 2 ~~~kri~~iGDSit~g 17 (207)
T d3dc7a1 2 VSFKRPAWLGDSITAN 17 (207)
T ss_dssp BCCSSEEEEESTTTST
T ss_pred CCCCEEEEEehHhhcC
Confidence 4679999999999853
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|