Citrus Sinensis ID: 037538
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.928 | 0.423 | 0.432 | 3e-89 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.926 | 0.414 | 0.428 | 7e-86 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.991 | 0.445 | 0.412 | 1e-79 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.787 | 0.318 | 0.364 | 3e-58 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.930 | 0.365 | 0.340 | 8e-58 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.921 | 0.340 | 0.343 | 3e-56 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.804 | 0.326 | 0.374 | 9e-56 | |
| O22938 | 890 | Leucine-rich repeat recep | no | no | 0.850 | 0.440 | 0.337 | 1e-53 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.908 | 0.372 | 0.339 | 2e-51 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.904 | 0.367 | 0.347 | 2e-51 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 198/458 (43%), Positives = 268/458 (58%), Gaps = 30/458 (6%)
Query: 33 TIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVG 92
T E D+ ALL FK+ +++D ++SSWN S CNW GVTC N RVT L+L QL G
Sbjct: 21 TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGG 80
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
I SIGNL+ L ++L++N F G IP+E+G+L +L+ L++ NYL G IP L +C+ L
Sbjct: 81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
+ +N G +P +L SLT L + L +N+ G +P +GN + L+ L L+ NNL G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 213 SIPNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPN 243
IP+++ QL+ + L N S D+G+ LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260
Query: 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303
L F G NYFTGSIP +LSN S L+ L EN LTG+IP FG++ +L L N LG
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLG 319
Query: 304 SREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV 363
S DL FL L NCT LE LG+ +N GG++PISIANLS L L +G L+ G+IP
Sbjct: 320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379
Query: 364 GIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL 423
I NL+NL L L+ N LSG +P +G+L L L L +N+ SG +P+ +GN+T+L L
Sbjct: 380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLD 439
Query: 424 MEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ N FEG +P SLGNC L L + N LNGTIP E+
Sbjct: 440 LSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEI 477
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 196/457 (42%), Positives = 273/457 (59%), Gaps = 30/457 (6%)
Query: 35 EADKLALLDFKNHLTQD-PLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS 93
E D ALL+FK+ ++++ ++++SWN S FCNW+GVTC RV L L +L G
Sbjct: 29 ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 94 IPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELR 153
I SIGNL+ L +NL N F IP+++GRL +LQ LN++YN L G+IP++LS+C+ L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS 213
+ + S+N +P +L SL+KL I+ L +NLTGN PA +GN +SLQ L A N + G
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 214 IPNELGQLSALGFF-------------TLYE----------------NFISDVGLTLPNL 244
IP+E+ +L+ + FF LY N +D G LPNL
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268
Query: 245 KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+ G N FTG+IP +L+N S+L+ D + N L+G+IP +FG L++L L N LG+
Sbjct: 269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGN 328
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
L F+ +ANCT LE L + N GGE+P SIANLST L L +G NL+ G IP
Sbjct: 329 NSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHD 388
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
I NLV+L L LE N LSG +P G+L L+ ++L +N SG +PS GN+T L +L +
Sbjct: 389 IGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHL 448
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
N F G IP SLG C+ L L + +N LNGTIP+E+
Sbjct: 449 NSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEI 485
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 202/490 (41%), Positives = 287/490 (58%), Gaps = 33/490 (6%)
Query: 1 MELITVPELQMDKLLQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWN 60
M LI V L L+ ++L + T E DK ALL+FK+ +++ ++ SWN
Sbjct: 8 MRLILVSAL----LVSVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWN 63
Query: 61 DSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPE 120
DS+ C+W GV C + RVT + L +L G + +GNL+ L +NL N FHG IP
Sbjct: 64 DSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPS 123
Query: 121 EIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180
E+G L +LQ LN++ N G IP LS+C+ L + + S+N +P + SL+KL ++
Sbjct: 124 EVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLS 183
Query: 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN-------- 232
LG +NLTG PA +GN +SLQ+L N + G IP ++ +L + FF + N
Sbjct: 184 LGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPP 243
Query: 233 ---------FIS------------DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVL 271
F+S D G LPNL+I G+N FTG+IP +LSN S+L+ L
Sbjct: 244 PIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQL 303
Query: 272 DFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG 331
D N LTG IP +FG L++L+ L + N LG+ GDL+FL L NC+ L+ L + N
Sbjct: 304 DIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNK 363
Query: 332 FGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR 391
GG++P+ IANLST L L++G NL+ G+IP GI NLV+L L L N L+G +P +G
Sbjct: 364 LGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGE 423
Query: 392 LNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451
L++L + L +N SG +PSSLGN++ L+ L + N FEGSIP SLG+C L LNL +N
Sbjct: 424 LSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTN 483
Query: 452 NLNGTIPKEV 461
LNG+IP E+
Sbjct: 484 KLNGSIPHEL 493
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 225/406 (55%), Gaps = 43/406 (10%)
Query: 88 KQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLS 147
K++ G IP+ IG+ +NLT + L + G +P +G+L+KL+ L++ +SG+IP++L
Sbjct: 212 KEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLG 271
Query: 148 HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207
+C+EL N G IP ++ LTKLE + L ++L G IP +GN S+L+++ L+
Sbjct: 272 NCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSL 331
Query: 208 NNLHGSIPNELGQLSALGFFTLYEN-----------------------------FISDVG 238
N L GSIP+ +G+LS L F + +N S++G
Sbjct: 332 NLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELG 391
Query: 239 LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298
TL L +F N GSIP L++ ++LQ LD + N LTGTIP L++L +L
Sbjct: 392 -TLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLI 450
Query: 299 QNELGS---REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355
N L +EIG NC+SL L L N GE+P I +L + L N
Sbjct: 451 SNSLSGFIPQEIG---------NCSSLVRLRLGFNRITGEIPSGIGSLK-KINFLDFSSN 500
Query: 356 LMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN 415
+HG +P I + L ++ L N+L GS+P + L+ L+ L+++AN+FSG +P+SLG
Sbjct: 501 RLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGR 560
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L L++L++ +N F GSIP SLG C LQ+L+L SN L+G IP E+
Sbjct: 561 LVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSEL 606
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 164/482 (34%), Positives = 236/482 (48%), Gaps = 53/482 (10%)
Query: 29 LESATIEADKLALLDFKNHLTQDPLQIMSSWN--DSVHFCNWVGVTCSPSNGRVTVLKLE 86
L + E + AL FKN ++ DPL ++S W S+ CNW G+TC S G V + L
Sbjct: 22 LAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCD-STGHVVSVSLL 80
Query: 87 SKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNL 146
KQL G + +I NLT L ++L N F G+IP EIG+L +L L L NY SG IP+ +
Sbjct: 81 EKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGI 140
Query: 147 SHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206
+ + N G +P+++ + L +I +NLTG IP +G+ LQ+ + A
Sbjct: 141 WELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAA 200
Query: 207 RNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNYFTGSIPVS 261
N+L GSIP +G L+ L L N ++ D G L NL+ N G IP
Sbjct: 201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFG-NLLNLQSLVLTENLLEGDIPAE 259
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN--- 318
+ N S+L L+ +N LTG IP G+L L L +N+L S L L L +
Sbjct: 260 IGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319
Query: 319 ---------------CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY--------- 354
SLEVL L N F GE P SI NL +L +LT+G+
Sbjct: 320 SENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLR-NLTVLTVGFNNISGELPA 378
Query: 355 ---------------NLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
NL+ G IP I N L LL L N ++G +P GR+N L +
Sbjct: 379 DLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFIS 437
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459
+ N F+G +P + N + L L + +N G++ P +G +KL++L +S N+L G IP+
Sbjct: 438 IGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPR 497
Query: 460 EV 461
E+
Sbjct: 498 EI 499
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 232/483 (48%), Gaps = 58/483 (12%)
Query: 30 ESATIEADKLALLDFKNHLTQDPLQI--MSSWN-DSVHFCNWVGVTCSPSN-GRVTVLKL 85
+ I D LL+ K L +P + + WN D++++C+W GVTC + RV L L
Sbjct: 19 QPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNL 78
Query: 86 ESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN 145
L GSI G NL ++L N G IP + L L+ L L N L+G+IP+
Sbjct: 79 TGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQ 138
Query: 146 LSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205
L +RS N+ +G IP+ L +L L+++ L + LTG IP+ +G +Q L+L
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLIL 198
Query: 206 ARNNLHGSIPNELGQLSALGFFTLYENFI-----SDVGLTLPNLKIFAGGVNYFTGSIPV 260
N L G IP ELG S L FT EN + +++G L NL+I N TG IP
Sbjct: 199 QDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELG-RLENLEILNLANNSLTGEIPS 257
Query: 261 ------------------------SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLN 296
SL++ NLQ LD + N LTG IPE F ++ L+ L
Sbjct: 258 QLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLV 317
Query: 297 FDQNEL---------------------GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
N L G++ G++ L+ C SL+ L L+ N G
Sbjct: 318 LANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPV--ELSKCQSLKQLDLSNNSLAGS 375
Query: 336 MPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+P ++ L L L + N + G + I NL NL L L NNL G +P+ I L KL
Sbjct: 376 IPEALFEL-VELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKL 434
Query: 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
E L L N+FSG +P +GN T L + M N FEG IPPS+G K+L +L+L N L G
Sbjct: 435 EVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVG 494
Query: 456 TIP 458
+P
Sbjct: 495 GLP 497
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 19/390 (4%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
+ VL L + ++ GS+P S+G L+ L ++++ G+IP+E+G +L +L L N LS
Sbjct: 229 LKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLS 288
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
G +P L L N+ G IP+++ + L I L + +G IP GN S+
Sbjct: 289 GTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSN 348
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNYF 254
LQ L+L+ NN+ GSIP+ L + L F + N IS ++GL L L IF G N
Sbjct: 349 LQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGL-LKELNIFLGWQNKL 407
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR---EIGDLN 311
G+IP L+ NLQ LD ++N LTG++P L++L +L N + EIG
Sbjct: 408 EGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIG--- 464
Query: 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNL 371
NCTSL L L N GE+P I L +L L + N + G +P+ I N L
Sbjct: 465 ------NCTSLVRLRLVNNRITGEIPKGIGFLQ-NLSFLDLSENNLSGPVPLEISNCRQL 517
Query: 372 SLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431
+L L N L G +P + L KL+ L++++N +G +P SLG+L L+RL++ +N F G
Sbjct: 518 QMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNG 577
Query: 432 SIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
IP SLG+C LQ+L+LSSNN++GTIP+E+
Sbjct: 578 EIPSSLGHCTNLQLLDLSSNNISGTIPEEL 607
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 215/412 (52%), Gaps = 20/412 (4%)
Query: 59 WN-DSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQ 117
W+ + +C WVG+ C +N V +L L QL G++ I +L +L ++L N F+G+
Sbjct: 43 WSSNGTDYCTWVGLKCGVNNSFVEMLDLSGLQLRGNV-TLISDLRSLKHLDLSGNNFNGR 101
Query: 118 IPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLE 177
IP G L +L+ L+L+ N G IP LR+F S N +G+IPD+L L +LE
Sbjct: 102 IPTSFGNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFNISNNLLVGEIPDELKVLERLE 161
Query: 178 IIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237
++ + L G+IP WVGN SSL+V N+L G IPN LG +S L L+ N +
Sbjct: 162 EFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNGLGLVSELELLNLHSNQLEG- 220
Query: 238 GLTLP-------NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLK 290
+P LK+ N TG +P ++ S L + N L G IP G++
Sbjct: 221 --KIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRIGNNELVGVIPRTIGNIS 278
Query: 291 DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRIL 350
L D+N L + + + C++L +L LA NGF G +P + L +L+ L
Sbjct: 279 GLTYFEADKNNLSGEIVAE------FSKCSNLTLLNLAANGFAGTIPTELGQL-INLQEL 331
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410
+ N + G IP NL+ L L N L+G++P+ + + +L+ L L+ N G +P
Sbjct: 332 ILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRGDIP 391
Query: 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV-LNLSSNNLNGTIPKEV 461
+GN L +L + N G+IPP +G + LQ+ LNLS N+L+G++P E+
Sbjct: 392 HEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPEL 443
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 0 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 224/448 (50%), Gaps = 29/448 (6%)
Query: 31 SATIEADKLALLDFKNHLTQDPLQIMSSWN--DSVHFCNWVGVTCSPSNGR-------VT 81
S ++ +D LL+ KN QD L + +WN D CNW+GV CS VT
Sbjct: 30 SESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETP-CNWIGVNCSSQGSSSSSNSLVVT 88
Query: 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGK 141
L L S L G + SIG L NL +NL N G IP EIG KL+ + L N G
Sbjct: 89 SLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGS 148
Query: 142 IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQ 201
IP ++ ++LRSF N G +P+++ L LE + T+NLTG +P +GN + L
Sbjct: 149 IPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLT 208
Query: 202 VLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNYFTG 256
+N+ G+IP E+G+ L L +NFIS ++G+ L L+ N F+G
Sbjct: 209 TFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGM-LVKLQEVILWQNKFSG 267
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS---REIGDLNFL 313
IP + N ++L+ L N L G IP G++K L +L QN+L +E+G L
Sbjct: 268 FIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKL--- 324
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373
+ + + ++N GE+P+ ++ +S LR+L + N + G IP + L NL+
Sbjct: 325 ------SKVMEIDFSENLLSGEIPVELSKIS-ELRLLYLFQNKLTGIIPNELSKLRNLAK 377
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
L L N+L+G +P L + L+L N SG +P LG + L + EN+ G I
Sbjct: 378 LDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKI 437
Query: 434 PPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
PP + L +LNL SN + G IP V
Sbjct: 438 PPFICQQSNLILLNLGSNRIFGNIPPGV 465
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 233/457 (50%), Gaps = 40/457 (8%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHF--CNWVGVTCSPSNGRVTVLKLESKQLVG 92
+A+ AL FK +L DPL ++SW+ S C+W GV C+ N RVT ++L QL G
Sbjct: 26 QAEIDALTAFKLNL-HDPLGALTSWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSG 82
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
I I L L ++L N F+G IP + +L + L YN LSGK+P + + T L
Sbjct: 83 RISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSL 142
Query: 153 RSF----------------------EASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNI 190
F + S+N F GQIP L +LT+L+++ L + LTG I
Sbjct: 143 EVFNVAGNRLSGEIPVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202
Query: 191 PAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV----GLTLPNLKI 246
PA +GN SLQ L L N L G++P+ + S+L + EN I V LP L++
Sbjct: 203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEV 262
Query: 247 FAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI-PENFGSLKD-LVRLNFDQNELGS 304
+ N F+G++P SL ++L ++ N + + PE + + L L+ +N +
Sbjct: 263 LSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISG 322
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
R F +L N SL+ L ++ N F GE+P I NL L L + N + G IPV
Sbjct: 323 R------FPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLK-RLEELKLANNSLTGEIPVE 375
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
I+ +L +L EGN+L G +PE +G + L+ L L N FSG++PSS+ NL L RL +
Sbjct: 376 IKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNL 435
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
EN GS P L L L+LS N +G +P +
Sbjct: 436 GENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSI 472
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| 449483694 | 1005 | PREDICTED: probable LRR receptor-like se | 0.926 | 0.424 | 0.576 | 1e-141 | |
| 449440277 | 1088 | PREDICTED: probable LRR receptor-like se | 0.926 | 0.392 | 0.572 | 1e-140 | |
| 356566660 | 1020 | PREDICTED: probable LRR receptor-like se | 0.926 | 0.418 | 0.569 | 1e-129 | |
| 357505893 | 1003 | Receptor kinase-like protein [Medicago t | 0.926 | 0.425 | 0.555 | 1e-125 | |
| 224139072 | 970 | predicted protein [Populus trichocarpa] | 0.837 | 0.397 | 0.619 | 1e-123 | |
| 449440275 | 821 | PREDICTED: probable LRR receptor-like se | 0.960 | 0.539 | 0.501 | 1e-121 | |
| 449483707 | 938 | PREDICTED: probable LRR receptor-like se | 0.928 | 0.456 | 0.516 | 1e-121 | |
| 449483698 | 1099 | PREDICTED: probable LRR receptor-like se | 0.984 | 0.413 | 0.491 | 1e-121 | |
| 449440267 | 938 | PREDICTED: probable LRR receptor-like se | 0.928 | 0.456 | 0.516 | 1e-121 | |
| 449483700 | 1343 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.926 | 0.317 | 0.512 | 1e-120 |
| >gi|449483694|ref|XP_004156662.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/456 (57%), Positives = 332/456 (72%), Gaps = 29/456 (6%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSI 94
E+D+L LLD K + DPL+IMSSWNDS+HFC+WVGVTCSP+ +V VL LE++QL GSI
Sbjct: 7 ESDRLVLLDLKRRVLDDPLKIMSSWNDSIHFCDWVGVTCSPTIRKVMVLNLEARQLTGSI 66
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154
P+S+GNLT+LT I L N F G IP+E+G+L L LNL++N G+I +N+SHCTEL
Sbjct: 67 PSSLGNLTHLTEIRLGNNNFLGAIPQELGKLLLLHHLNLSFNNFDGEIASNISHCTELLV 126
Query: 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214
E S N+F+GQIP Q +L+KLE I G +NL G IP W+GNFSSL L A N+ GSI
Sbjct: 127 LELSRNEFVGQIPHQFFTLSKLERIGFGGNNLVGTIPPWIGNFSSLFSLSFALNSFQGSI 186
Query: 215 PNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPNLK 245
P+ELG+LS L F++Y N+++ DVG TLPNL+
Sbjct: 187 PSELGRLSRLKLFSVYGNYLTGTVPPSIYNITSLTYFSLTQNRLRGTLPPDVGFTLPNLQ 246
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
+FAGGVN F G IP SL+N S LQVLDFAEN L GT+P + G+LK+LVR NFD N LGS
Sbjct: 247 VFAGGVNNFGGPIPTSLANISGLQVLDFAENSLIGTLPHDLGNLKELVRFNFDDNRLGSG 306
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
++ DLN ++ L NCTSL VLGL+ N FGG +P+SI+NLS L ILT+G NL+ G IPVGI
Sbjct: 307 KVDDLNVIRSLTNCTSLSVLGLSGNRFGGTLPLSISNLSNQLTILTLGRNLLSGGIPVGI 366
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
+NL+NL LLG+EGNNL+GSVP IG+ +KL L +N NK SG +PSS+GNL++L++L ME
Sbjct: 367 DNLINLQLLGVEGNNLNGSVPSNIGKFHKLAALYVNNNKLSGTIPSSIGNLSLLTKLFME 426
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+NR EGSIPPSLG CK+LQVL+LS NNL+GTIPKEV
Sbjct: 427 DNRLEGSIPPSLGQCKRLQVLDLSGNNLSGTIPKEV 462
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440277|ref|XP_004137911.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/456 (57%), Positives = 331/456 (72%), Gaps = 29/456 (6%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSI 94
E+D+L LLD K + DPL+IMSSWNDS+HFC+WVGVTCSP+ +V VL LE++QL GSI
Sbjct: 7 ESDRLVLLDLKRRVLDDPLKIMSSWNDSIHFCDWVGVTCSPTIRKVMVLNLEARQLTGSI 66
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154
P+S+GNLT+LT I L N F G IP+E+G+L L LNL++N G+I +N+SHCTEL
Sbjct: 67 PSSLGNLTHLTEIRLGNNNFLGAIPQELGKLLLLHHLNLSFNNFDGEIASNISHCTELLV 126
Query: 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214
E S N+F+GQIP Q +L+KLE I G +NL G IP W+GNFSSL L A N+ GSI
Sbjct: 127 LELSRNEFVGQIPHQFFTLSKLERIGFGGNNLVGTIPPWIGNFSSLFSLSFALNSFQGSI 186
Query: 215 PNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPNLK 245
P+ELG+LS L F++Y N+++ DVG TLPNL+
Sbjct: 187 PSELGRLSRLKLFSVYGNYLTGTVPPSIYNITSLTYFSLTQNRLRGTLPPDVGFTLPNLQ 246
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
+FAGG N F G IP SL+N S LQVLDFAEN L GT+P + G+LK+LVR NFD N LGS
Sbjct: 247 VFAGGANNFGGPIPTSLANISGLQVLDFAENSLIGTLPHDLGNLKELVRFNFDDNRLGSG 306
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
++ DLN ++ L NCTSL VLGL+ N FGG +P+SI+NLS L ILT+G NL+ G IPVGI
Sbjct: 307 KVDDLNVIRSLTNCTSLSVLGLSGNRFGGTLPLSISNLSNQLTILTLGRNLLSGGIPVGI 366
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
+NL+NL LLG+EGNNL+GSVP IG+ ++L L +N NK SG +PSS+GNL++L++L ME
Sbjct: 367 DNLINLQLLGVEGNNLNGSVPSNIGKFHRLAALYVNNNKLSGTIPSSIGNLSLLTKLFME 426
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+NR EGSIPPSLG CK+LQVL+LS NNL+GTIPKEV
Sbjct: 427 DNRLEGSIPPSLGQCKRLQVLDLSGNNLSGTIPKEV 462
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566660|ref|XP_003551548.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 308/432 (71%), Gaps = 5/432 (1%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSI 94
E D LLDFK+ + DP IMS WNDS+H CNW+G+TC+ SNGRV L L L G++
Sbjct: 46 ETDLHTLLDFKSRIVHDPFHIMSLWNDSIHHCNWLGITCNNSNGRVMYLILSDMTLSGTL 105
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154
P SIGNLT LT +NL + FHG+ P E+G LQ LQ +N++YN G IP+NLSHCTEL
Sbjct: 106 PPSIGNLTFLTRLNLRNSSFHGEFPHEVGLLQYLQHINISYNSFGGSIPSNLSHCTELSI 165
Query: 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214
A N++ G IP + + + L ++ L +NL GNIP +G S L +L L N L G+I
Sbjct: 166 LSAGHNNYTGTIPAWIGNSSSLSLLNLAVNNLHGNIPNEIGQLSRLTLLALNGNYLSGTI 225
Query: 215 PNELGQLSALGFFTLYENFI-----SDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQ 269
P + +S+L FFT+ +N + +DVG T PNL+ FAGGVN FTG+IP SLSNAS L+
Sbjct: 226 PGTIFNISSLFFFTVSQNHLHGNIPADVGYTFPNLETFAGGVNSFTGTIPESLSNASRLE 285
Query: 270 VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329
+LDFAENGLTGT+P+N G L L RLNFD N LG+ + GDLNFL L NCT+L+VLGL+
Sbjct: 286 ILDFAENGLTGTLPKNIGRLPLLKRLNFDDNRLGTGKAGDLNFLASLVNCTALKVLGLSD 345
Query: 330 NGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389
N FGGE+P +IANLST L LT+G N +HG++P+GI NLVNL+ LGLE NNLSG VP I
Sbjct: 346 NSFGGELPSTIANLSTQLTSLTLGGNGIHGSVPIGIRNLVNLTFLGLEENNLSGFVPHTI 405
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449
G L L GL+LN N FSG +PSS+GNLT L+RL MEEN FEGSIP +LG C+ L +LNLS
Sbjct: 406 GMLRLLNGLDLNGNNFSGVIPSSIGNLTRLTRLQMEENNFEGSIPANLGKCQSLLMLNLS 465
Query: 450 SNNLNGTIPKEV 461
N LNGTIP++V
Sbjct: 466 HNMLNGTIPRQV 477
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505893|ref|XP_003623235.1| Receptor kinase-like protein [Medicago truncatula] gi|355498250|gb|AES79453.1| Receptor kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 240/432 (55%), Positives = 307/432 (71%), Gaps = 5/432 (1%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSI 94
E D ALLDFK+ +TQDP Q +S WNDS+H CNW+G+TC+ SNGRV L L L G++
Sbjct: 41 ETDLHALLDFKSRITQDPFQALSLWNDSIHHCNWLGITCNISNGRVMHLILADMTLAGTL 100
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154
SIGNLT LT +NL N FHG+ P+++G L LQ LN++YN SG IP+NLS C EL
Sbjct: 101 SPSIGNLTYLTKLNLRNNSFHGEFPQQVGNLLYLQHLNISYNSFSGSIPSNLSQCIELSI 160
Query: 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214
+ N+F G IP + + + L ++ L +NL G IP VG S L + L N+L+G+I
Sbjct: 161 LSSGHNNFTGTIPTWIGNFSSLSLLNLAVNNLHGTIPNEVGKLSRLTLFALNGNHLYGTI 220
Query: 215 PNELGQLSALGFFT-----LYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQ 269
P + +S+L F T L+ N DVG TLPNL+ FAGGVN FTG+IP SLSNAS L+
Sbjct: 221 PLSVFNISSLSFLTFSQNNLHGNLPYDVGFTLPNLETFAGGVNDFTGTIPESLSNASRLE 280
Query: 270 VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329
+LDFAEN L GT+P+N G L L RLNFD N LG+ E G+LNFL L NCT+LEVLGLA+
Sbjct: 281 ILDFAENNLIGTLPKNIGRLTLLKRLNFDTNRLGNGEDGELNFLTSLINCTALEVLGLAE 340
Query: 330 NGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389
N FGG++P SI NLS +L L +G N ++G+IP+GI NLVNL+ LG+E NNLSG VP+ I
Sbjct: 341 NQFGGKLPSSIGNLSINLNALDLGENAIYGSIPIGISNLVNLTSLGMEKNNLSGFVPDTI 400
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449
G L KL LEL +NKFSG +PSS+GNLT L++LL+ +N FEGSIP SL NC++L +LNLS
Sbjct: 401 GMLQKLVDLELYSNKFSGVIPSSIGNLTRLTKLLIADNNFEGSIPTSLENCQRLLMLNLS 460
Query: 450 SNNLNGTIPKEV 461
N LNG+IP++V
Sbjct: 461 HNMLNGSIPRQV 472
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139072|ref|XP_002322973.1| predicted protein [Populus trichocarpa] gi|222867603|gb|EEF04734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/426 (61%), Positives = 316/426 (74%), Gaps = 40/426 (9%)
Query: 36 ADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIP 95
+D+LALLDF+ +TQDP +IMSSWNDS+HFCNW LVGSIP
Sbjct: 31 SDRLALLDFRRLITQDPHKIMSSWNDSIHFCNW--------------------GLVGSIP 70
Query: 96 ASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSF 155
S+GNLT LTGINL N FHG++PEE+GRL +LQ +N+T+N GKIP NL++CTEL F
Sbjct: 71 PSVGNLTYLTGINLRNNSFHGELPEELGRLSRLQHINVTFNSFGGKIPANLTYCTELTVF 130
Query: 156 EASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215
+ N F G+IP QL SLTKL + G +N TG+IP+W+GNFSSL L L NNL GSIP
Sbjct: 131 SVAVNKFTGEIPHQLSSLTKLVFLHFGGNNFTGSIPSWIGNFSSLSSLSLPLNNLRGSIP 190
Query: 216 NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
NELGQL+ LG+F +Y G+ Y +G IPVSLSNAS LQ+LDF+
Sbjct: 191 NELGQLTGLGYFQVY-------------------GI-YLSGPIPVSLSNASRLQILDFSI 230
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
NGLTGTIP+N GSLK LVRLNFD N LG+ E+ LNFL LANCTSLEVLGL++N FGGE
Sbjct: 231 NGLTGTIPKNLGSLKSLVRLNFDLNNLGNGEVDGLNFLSSLANCTSLEVLGLSENNFGGE 290
Query: 336 MPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+ SI NLST L+ILT+G NL+HGNIP IENLVNL+LLGLEGN L+GSVP++IG+ KL
Sbjct: 291 LHNSIGNLSTQLKILTLGQNLIHGNIPAEIENLVNLNLLGLEGNYLTGSVPDLIGKQKKL 350
Query: 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
EGL L+ N+FSG +PS+LGNLT L+RL +EENRFEG+IP SLGNCK LQ LNLSSNNLNG
Sbjct: 351 EGLHLHVNRFSGSIPSALGNLTRLTRLFLEENRFEGNIPSSLGNCKSLQNLNLSSNNLNG 410
Query: 456 TIPKEV 461
TIP+EV
Sbjct: 411 TIPEEV 416
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440275|ref|XP_004137910.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/477 (50%), Positives = 315/477 (66%), Gaps = 34/477 (7%)
Query: 14 LLQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTC 73
LL L L F S+ + E+ E+D+LALLD K + DPL+IMSSWNDS HFC+W+GV C
Sbjct: 18 LLSLTLDFASMLT--FEN---ESDRLALLDLKARVHIDPLKIMSSWNDSTHFCDWIGVAC 72
Query: 74 SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNL 133
+ +NGRV L LE+++L GSIP S+GNLT LT I L N FHG IP+E GRL +L+ LNL
Sbjct: 73 NYTNGRVVGLSLEARKLTGSIPPSLGNLTYLTVIRLDDNNFHGIIPQEFGRLLQLRHLNL 132
Query: 134 TYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
+ N SG+IP N+SHCT+L S N +GQIP Q +LT L++I ++LTG+ P+W
Sbjct: 133 SQNNFSGEIPANISHCTKLVSLVLGGNGLVGQIPQQFFTLTNLKLIGFAANSLTGSFPSW 192
Query: 194 VGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS------------------ 235
+GNFSSL + L RNN GSIP+E+G+LS L FF + N ++
Sbjct: 193 IGNFSSLLSMSLMRNNFQGSIPSEIGRLSELRFFQVAGNNLTGASWPSICNISSLTYLSL 252
Query: 236 -----------DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
D+GL+LPNL++F N F G IP SL+N +LQ++DF +N L GT+P+
Sbjct: 253 GYNQFKGTLPPDIGLSLPNLQVFGCSGNNFHGPIPNSLANIVSLQIIDFFDNNLVGTLPD 312
Query: 285 NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS 344
+ G+L++L RLN +N LGS E GDLNF+ L NCT L LGL N FGG +P SIANLS
Sbjct: 313 DMGNLRNLERLNLGENSLGSGEAGDLNFINSLVNCTRLRALGLDTNHFGGVLPSSIANLS 372
Query: 345 THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK 404
L L++GYN++ G+IP G NL+NL G+EGN ++GS+P IG L L L L N+
Sbjct: 373 NQLTALSLGYNMLSGSIPSGTTNLINLQGFGVEGNIMNGSIPPNIGNLKNLVLLYLYENE 432
Query: 405 FSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
F+G +P S+GNL+ L++L M N+ +GSIP SLG CK L L LSSNNLNGTIPKE+
Sbjct: 433 FTGPIPYSIGNLSSLTKLHMSHNQLDGSIPTSLGQCKSLTSLKLSSNNLNGTIPKEI 489
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483707|ref|XP_004156666.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/457 (51%), Positives = 300/457 (65%), Gaps = 29/457 (6%)
Query: 34 IEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS 93
IE+D LALLD K+ + DPL+IMSSWNDS H C+W G+TC+ + GRV VL LE+ +L GS
Sbjct: 68 IESDHLALLDLKSRILNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAHKLSGS 127
Query: 94 IPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELR 153
IP S+GN+T+L I L NR HG IP+E G+L +L+ LNL+YN SG+IP N+SHCT+L
Sbjct: 128 IPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLV 187
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS 213
E N GQIP QL +LTKL+ + +NL G IP+W+GNFSSL L +A NN G+
Sbjct: 188 HLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYNNFQGN 247
Query: 214 IPNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPNL 244
IPNELG L L FF + N+++ ++G TLPNL
Sbjct: 248 IPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGYTLPNL 307
Query: 245 KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+IF GG N FTGSIP S +N S L+ LD N G +P + GSLKDL RLNF+ N LG+
Sbjct: 308 QIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGT 367
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
+GDLNF+ LANCTSL+VLGL+ N FGG +P SI NLS+ L LT+G N++ G+IP
Sbjct: 368 GRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGANMLSGSIPSA 427
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
I NL+NL L + N L+GSVP IG L L L L N +G +PSS+GNL+ + +L M
Sbjct: 428 IANLINLQHLVVGQNYLNGSVPPNIGNLQNLVKLFLQGNNLTGPIPSSIGNLSSIVKLYM 487
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+NR EGSIP SLG CK LQ+LNLS N L+G IP EV
Sbjct: 488 NDNRLEGSIPRSLGRCKTLQILNLSGNKLSGLIPNEV 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483698|ref|XP_004156663.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/486 (49%), Positives = 316/486 (65%), Gaps = 32/486 (6%)
Query: 8 ELQMDKLLQLALPFESLYSKNLESATI---EADKLALLDFKNHLTQDPLQIMSSWNDSVH 64
+LQ + L L+ + S N S E+D+LALLD K + DPL+IMSSWNDS H
Sbjct: 48 QLQQLRYLNLSFNYFSGEIPNFASMLTFENESDRLALLDLKARVHIDPLKIMSSWNDSTH 107
Query: 65 FCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGR 124
FC+W+GV C+ +NGRV L LE+++L GSIP S+GNLT LT I L N FHG IP+E GR
Sbjct: 108 FCDWIGVACNYTNGRVVGLSLEARKLTGSIPPSLGNLTYLTVIRLDDNNFHGIIPQEFGR 167
Query: 125 LQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184
L +L+ LNL+ N SG+IP N+SHCT+L S N +GQIP Q +LT L++I +
Sbjct: 168 LLQLRHLNLSQNNFSGEIPANISHCTKLVSLVLGGNGLVGQIPQQFFTLTNLKLIGFAAN 227
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS--------- 235
+LTG+ P+W+GNFSSL + L RNN GSIP+E+G+LS L FF + N ++
Sbjct: 228 SLTGSFPSWIGNFSSLLSMSLMRNNFQGSIPSEIGRLSELRFFQVAGNNLTGASWPSICN 287
Query: 236 --------------------DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
D+GL+LPNL++F N F G IP SL+N +LQ++DF +
Sbjct: 288 ISSLTYLSLGYNQFKGTLPPDIGLSLPNLQVFGCSGNNFHGPIPNSLANIVSLQIIDFFD 347
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
N L GT+P++ G+L++L RLN +N LGS E GDLNF+ L NCT L LGL N FGG
Sbjct: 348 NNLVGTLPDDMGNLRNLERLNLGENSLGSGEAGDLNFINSLVNCTRLRALGLDTNHFGGV 407
Query: 336 MPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+P SIANLS L L++GYN++ G+IP G NL+NL G+EGN ++GS+P IG L L
Sbjct: 408 LPSSIANLSNQLTALSLGYNMLSGSIPSGTTNLINLQGFGVEGNIMNGSIPPNIGNLKNL 467
Query: 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
L L N+F+G +P S+GNL+ L++L M N+ +GSIP SLG CK L L LSSNNLNG
Sbjct: 468 VLLYLYENEFTGPIPYSIGNLSSLTKLHMSHNQLDGSIPTSLGQCKSLTSLKLSSNNLNG 527
Query: 456 TIPKEV 461
TIPKE+
Sbjct: 528 TIPKEI 533
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440267|ref|XP_004137906.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/457 (51%), Positives = 300/457 (65%), Gaps = 29/457 (6%)
Query: 34 IEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS 93
IE+D LALLD K+ + DPL+IMSSWNDS H C+W G+TC+ + GRV VL LE+ +L GS
Sbjct: 68 IESDHLALLDLKSRVLNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAHKLSGS 127
Query: 94 IPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELR 153
IP S+GN+T+L I L NR HG IP+E G+L +L+ LNL+YN SG+IP N+SHCT+L
Sbjct: 128 IPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLV 187
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS 213
E N GQIP QL +LTKL+ + +NL G IP+W+GNFSSL L +A NN G+
Sbjct: 188 HLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYNNFQGN 247
Query: 214 IPNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPNL 244
IPNELG L L FF + N+++ ++G TLPNL
Sbjct: 248 IPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGYTLPNL 307
Query: 245 KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+IF GG N FTGSIP S +N S L+ LD N G +P + GSLKDL RLNF+ N LG+
Sbjct: 308 QIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGT 367
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
+GDLNF+ LANCTSL+VLGL+ N FGG +P SI NLS+ L LT+G N++ G+IP
Sbjct: 368 GRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGANMLSGSIPSA 427
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
I NL+NL L + N L+GSVP IG L L L L N +G +PSS+GNL+ + +L M
Sbjct: 428 IANLINLQHLVVGQNYLNGSVPPNIGNLQNLVKLFLQGNNLTGPIPSSIGNLSSIVKLYM 487
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+NR EGSIP SLG CK LQ+LNLS N L+G IP EV
Sbjct: 488 NDNRLEGSIPRSLGRCKTLQILNLSGNKLSGLIPNEV 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483700|ref|XP_004156664.1| PREDICTED: LOW QUALITY PROTEIN: putative receptor-like protein kinase At3g47110-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/457 (51%), Positives = 308/457 (67%), Gaps = 30/457 (6%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSI 94
E+D+ ALLD K + DPL++MSSWNDS +FC+W+GVTC+ + GRV L LE++ L GS+
Sbjct: 23 ESDRTALLDLKGRVLNDPLKVMSSWNDSTYFCDWIGVTCNDTIGRVVSLNLETRDLTGSV 82
Query: 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154
P S+GNLT LT I+L N+FHG IP+E GRL +L+ LNL+YN G+ P N+SHCT+L
Sbjct: 83 PPSLGNLTYLTEIHLGGNKFHGPIPQEFGRLLQLRLLNLSYNNFGGEFPANISHCTKLVV 142
Query: 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214
E S+N F+GQIP++L +LTKLE + G +N TG IP WVGNFSS+ + RNN HGSI
Sbjct: 143 LELSSNGFVGQIPNELSTLTKLERFKFGINNFTGTIPPWVGNFSSILAMSFGRNNFHGSI 202
Query: 215 PNELGQLSALGFFTLYENFIS-----------------------------DVGLTLPNLK 245
P+E+G+LS + FFT+ EN ++ ++G TLPNL+
Sbjct: 203 PSEIGRLSKMEFFTVVENNLTGIVPPSIYNISSLTLLQFTKNHLQGTLPPNIGFTLPNLQ 262
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
FAGG+N F G IP SL+N S+LQ+LDF N G +P++ G LK L RLNF N LGS
Sbjct: 263 SFAGGINNFDGPIPKSLANISSLQILDFPNNNFFGMVPDDIGRLKYLERLNFGSNSLGSG 322
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
++GDLNF+ L NCT L +LGL N FGG +P SIANLS L +T+G N++ G+IP+GI
Sbjct: 323 KVGDLNFISSLVNCTRLRILGLDTNHFGGVVPSSIANLSNQLVAITLGDNMLSGSIPLGI 382
Query: 366 ENLVNLSLLGLEGNNLSG-SVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
NL+NL +L +EGN ++G S+P IG L L L L N G +PSS+GNLT L+ L +
Sbjct: 383 TNLINLQVLAMEGNMMNGSSIPPNIGNLKSLVLLYLGRNGLIGPIPSSIGNLTSLTNLYL 442
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
N+ +G IP SLG CK L L LSSNNL+GTIPKE+
Sbjct: 443 SYNKHDGYIPTSLGECKSLVSLELSSNNLSGTIPKEI 479
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.993 | 0.563 | 0.344 | 1.8e-62 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.850 | 0.388 | 0.381 | 5.6e-59 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.976 | 0.439 | 0.342 | 7.4e-58 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.939 | 0.428 | 0.332 | 8.5e-57 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.915 | 0.409 | 0.353 | 2e-56 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.852 | 0.389 | 0.351 | 7.2e-54 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.954 | 0.352 | 0.328 | 2.6e-51 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.848 | 0.381 | 0.351 | 6.4e-51 | |
| TAIR|locus:2074633 | 943 | RLP35 "AT3G11080" [Arabidopsis | 0.678 | 0.331 | 0.326 | 1.9e-50 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.809 | 0.326 | 0.332 | 5e-50 |
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 161/467 (34%), Positives = 233/467 (49%)
Query: 3 LITVPELQMDKLLQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWNDS 62
+I++P L L F S S + D+LALL FK+ L Q ++SWN S
Sbjct: 1 MISLPLLLFVLFFSALLLFPSS-SDDDGGGDAAGDELALLSFKSSLLYQGGQSLASWNTS 59
Query: 63 VH--FCNWVGVTCSPSNG-RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP 119
H C WVGV C + RV L+L S L G I S+GNL+ L + L N G+IP
Sbjct: 60 GHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIP 119
Query: 120 EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179
+E+ RL +LQ L L +N LSG+IP L + T L E + N G IP L LT L +
Sbjct: 120 QELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDL 179
Query: 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL 239
L + L+G+IP+ G L L LA NNL G+IP+ + +S+L F + N +S
Sbjct: 180 ALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLP 239
Query: 240 T-----LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294
T LP+L+ N F G IP S+ NASN+ + N +G +P G +++L R
Sbjct: 240 TNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQR 299
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354
L + + E D F+ L NC++L+ + L FGG +P S++NLS+ L L++
Sbjct: 300 LELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRD 359
Query: 355 NLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLG 414
N + G++P I P +L L L ++ NK G +P ++G
Sbjct: 360 NKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIG 419
Query: 415 NLTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
NLT L+ + ++ N F G+IP +LGN KL G IP E+
Sbjct: 420 NLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEI 466
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 5.6e-59, P = 5.6e-59
Identities = 153/401 (38%), Positives = 206/401 (51%)
Query: 69 VGVTCSPSNGRVTVL---KLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL 125
+G SPS G ++ L L G+IP +G L+ L +++ N G IP +
Sbjct: 78 LGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNC 137
Query: 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSN 185
+L +L L N L G +P+ L T L N+ G++P L +LT LE + L +N
Sbjct: 138 SRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNN 197
Query: 186 LTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTL-YENFIS----DVGLT 240
L G IP+ V + + L L NN G P L LS+L + Y +F D+G+
Sbjct: 198 LEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGIL 257
Query: 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300
LPNL F G NYFTGSIP +LSN S L+ L EN LTG+IP FG++ +L L N
Sbjct: 258 LPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTN 316
Query: 301 ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN 360
LGS DL FL L NCT LE LG+ +N GG++PISIANLS L L +G L+ G+
Sbjct: 317 SLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGS 376
Query: 361 IPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
IP I P +G+L L L L +N+ SG +P+ +GN+T+L
Sbjct: 377 IPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLE 436
Query: 421 RLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
L + N FEG +P SLGNC L GTIP E+
Sbjct: 437 TLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEI 477
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 7.4e-58, P = 7.4e-58
Identities = 162/473 (34%), Positives = 239/473 (50%)
Query: 1 MELITVPELQMDKLLQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWN 60
M LI V L L+ ++L + T E DK ALL+FK+ +++ ++ SWN
Sbjct: 8 MRLILVSAL----LVSVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWN 63
Query: 61 DSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPE 120
DS+ C+W GV C + RVT + L +L G + +GNL+ L +NL N FHG IP
Sbjct: 64 DSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPS 123
Query: 121 EIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180
E+G L +LQ LN++ N G IP LS+C+ L + + S+N +P + SL+KL ++
Sbjct: 124 EVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLS 183
Query: 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GL 239
LG +NLTG PA +GN +SLQ+L N + G IP ++ +L + FF + N + V
Sbjct: 184 LGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPP 243
Query: 240 TLPNLK--IFAGGV-NYFTGSI-PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRL 295
+ NL IF N F+G++ P S NLQ+L N TGTIPE ++ L +L
Sbjct: 244 PIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQL 303
Query: 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFG----GEMPI--SIANLSTHLRI 349
+ N L + L+F + L N L +LGL N G G++ ++ N S L+
Sbjct: 304 DIPSNHLTGKI--PLSFGR-LQN---LLLLGLNNNSLGNYSSGDLDFLGALTNCS-QLQY 356
Query: 350 LTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXXX-PEVIGRLNKLEGLELNANKFSGF 408
L +G+N + G +PV I P IG L L+ L+L N +G
Sbjct: 357 LNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGK 416
Query: 409 MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+P SLG L+ L ++L+ N G IP SLGN L G+IP +
Sbjct: 417 LPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSL 469
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 8.5e-57, P = 8.5e-57
Identities = 153/460 (33%), Positives = 235/460 (51%)
Query: 15 LQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCS 74
L L L F + + T E D+ ALL+FK+ +++ ++SSWN+S CNW VTC
Sbjct: 3 LFLLLSFSAHLLLGADGFTDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCG 62
Query: 75 PSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLT 134
+ RVT L L QL G + SIGN++ L ++L N F G IP E+G L +L+ L +
Sbjct: 63 RKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMA 122
Query: 135 YNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV 194
+N L G IP LS+C+ L + + +N +P +L SLTKL I+ LG +NL G +P +
Sbjct: 123 FNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSL 182
Query: 195 GNFSSLQVLLLARNNLHGSIPNELGQLS---ALG-----FFTLYENFISDVGLTLPNLKI 246
GN +SL+ L NN+ G +P+EL +LS LG FF ++ I ++ L +L +
Sbjct: 183 GNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLS-ALEDLFL 241
Query: 247 FAGGVNYFTGSIPVSLSNA-SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
F G F+GS+ N N++ L+ EN L G IP ++ L + ++N +
Sbjct: 242 FGSG---FSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMM--- 295
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFG----GEMPI--SIANLSTHLRILTMGYNLMHG 359
G + + F SL+ L L++N G G++ S+ N THL++L++GY + G
Sbjct: 296 -TGGI-YPNF-GKVPSLQYLDLSENPLGSYTFGDLEFIDSLTNC-THLQLLSVGYTRLGG 351
Query: 360 NIPVGIXXXXXXXXXXXXXXXXXXXX-PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV 418
+P I P+ IG L L+ L+L N +G +P+SLG L
Sbjct: 352 ALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLR 411
Query: 419 LSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIP 458
L L + NR G IP +GN +L++ G +P
Sbjct: 412 LGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVP 451
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 155/438 (35%), Positives = 223/438 (50%)
Query: 35 EADKLALLDFKNHLTQD-PLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS 93
E D ALL+FK+ ++++ ++++SWN S FCNW+GVTC RV L L +L G
Sbjct: 29 ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 94 IPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELR 153
I SIGNL+ L +NL N F IP+++GRL +LQ LN++YN L G+IP++LS+C+ L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 154 SFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS 213
+ + S+N +P +L SL+KL I+ L +NLTGN PA +GN +SLQ L A N + G
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 214 IPNELGQLSALGFFTLYENFISDVGL-----TLPNLKIFAGGVNYFTGSIPVSLSNA-SN 267
IP+E+ +L+ + FF + N S G + +L+ + N F+G++ N
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSG-GFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267
Query: 268 LQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG- 326
L+ L N TG IP+ ++ L R + N L S I L+F K L N L +
Sbjct: 268 LRRLLLGTNQFTGAIPKTLANISSLERFDISSNYL-SGSI-PLSFGK-LRNLWWLGIRNN 324
Query: 327 -LAQNGFGG-EMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXXXXXXXXXXXXX 384
L N G E ++AN T L L +GYN + G +P I
Sbjct: 325 SLGNNSSSGLEFIGAVANC-TQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISG 383
Query: 385 X-PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKL 443
P IG L L+ L L N SG +P S G L L + + N G IP GN +L
Sbjct: 384 TIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
Query: 444 QVXXXXXXXXXGTIPKEV 461
Q G IP+ +
Sbjct: 444 QKLHLNSNSFHGRIPQSL 461
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 7.2e-54, P = 7.2e-54
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 69 VGVTCSPSNGRVTVL---KLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL 125
+G SPS G ++ L L + G+IP +GNL L + + N G+IP +
Sbjct: 78 LGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNC 137
Query: 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSN 185
+L L+L N L +P+ L +L ND G+ P + +LT L ++ LG ++
Sbjct: 138 SRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNH 197
Query: 186 LTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLT 240
L G IP + S + L L NN G P LS+L L N S D G
Sbjct: 198 LEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNL 257
Query: 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300
LPN+ + N+ TG+IP +L+N S L++ +N +TG+I NFG L++L L N
Sbjct: 258 LPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANN 317
Query: 301 ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN 360
LGS GDL FL L NC+ L L ++ N GG +P SI N+ST L +L + NL++G+
Sbjct: 318 SLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGS 377
Query: 361 IPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
IP I P +G L L L L +N+FSG +PS +GNLT L
Sbjct: 378 IPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLV 437
Query: 421 RLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
+L + N FEG +PPSLG+C + GTIPKE+
Sbjct: 438 KLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEI 478
|
|
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 2.6e-51, P = 2.6e-51
Identities = 150/456 (32%), Positives = 215/456 (47%)
Query: 15 LQLALPFESLYSKNLESATIEADKLALLDFKNHLTQDPLQI--MSSWN-DSVHFCNWVGV 71
L L L F +S + I D LL+ K L +P + + WN D++++C+W GV
Sbjct: 4 LVLLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGV 63
Query: 72 TCSPSN-GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQD 130
TC + RV L L L GSI G NL ++L N G IP + L L+
Sbjct: 64 TCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLES 123
Query: 131 LNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNI 190
L L N L+G+IP+ L +RS N+ +G IP+ L +L L+++ L + LTG I
Sbjct: 124 LFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPI 183
Query: 191 PAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLK 245
P+ +G +Q L+L N L G IP ELG S L FT EN ++ ++G L NL+
Sbjct: 184 PSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELG-RLENLE 242
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
I N TG IP L S LQ L N L G IP++ L +L L+ N L +
Sbjct: 243 ILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNL-TG 301
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
EI + +F N + L L LA N G +P SI + +T+L L + + G IPV +
Sbjct: 302 EIPE----EFW-NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVEL 356
Query: 366 XXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
PE + L +L L L+ N G + S+ NLT L L++
Sbjct: 357 SKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLY 416
Query: 426 ENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
N EG +P + +KL+V G IP+E+
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI 452
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 6.4e-51, P = 6.4e-51
Identities = 143/407 (35%), Positives = 202/407 (49%)
Query: 67 NWVGVTCSPSNGRVTVLK---LESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG 123
N G+ SPS G ++ L+ L L G IP + L+ L + L N G IP IG
Sbjct: 90 NLSGII-SPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIG 148
Query: 124 RLQKLQDLNLTYNYLSGKIP----TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179
KL L+L++N L G IP +L H + L ++ N G+IP L +LT L+
Sbjct: 149 ACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYK---NGLSGEIPSALGNLTSLQEF 205
Query: 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI----- 234
L + L+G IP+ +G SSL + L +NNL G IPN + LS+L F++ EN +
Sbjct: 206 DLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIP 265
Query: 235 SDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294
++ TL L++ G N F G IP S++NAS+L V+ N +G I FG L++L
Sbjct: 266 TNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTE 325
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354
L +N +RE D F+ L NC+ L+ L L +N GG +P S +NLST L L +
Sbjct: 326 LYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALEL 385
Query: 355 NLMHGNIPVGIXXXXXXXXXXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLG 414
N + G+IP I P +GRL L L N SG +P ++G
Sbjct: 386 NKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIG 445
Query: 415 NLTVLSRLLMEENRFEGSIPPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
NLT L+ LL+ N+F G IP +L N L G IP E+
Sbjct: 446 NLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSEL 492
|
|
| TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 106/325 (32%), Positives = 161/325 (49%)
Query: 44 FKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPA--SIGNL 101
++N+ P SW ++ CNW G+TC +G V L L L GS + S+ L
Sbjct: 65 YRNNSRVSPHPTTESWRNNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRL 124
Query: 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161
NL ++L QN G+IP IG L L L+L+YN G IP+++ + + L S S+N
Sbjct: 125 QNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQ 184
Query: 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQL 221
F GQIP + +L+ L + L ++ +G IP+ +GN S+L L L N+ G IP+ +G L
Sbjct: 185 FSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNL 244
Query: 222 SALGFFTL-YENFISDVGLTLPNLK---IFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277
+ L + L Y NF+ ++ + NL + N +G++P+SL N + L L + N
Sbjct: 245 ARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQ 304
Query: 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP 337
TGTIP N L +L+ N G L F N L L L+ N G +
Sbjct: 305 FTGTIPNNISLLSNLMDFEASNNAF----TGTLPSSLF--NIPPLIRLDLSDNQLNGTLH 358
Query: 338 ISIANLSTHLRILTMGYNLMHGNIP 362
+ ++L+ L +G N G IP
Sbjct: 359 FGNISSPSNLQYLIIGSNNFIGTIP 383
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 5.0e-50, P = 5.0e-50
Identities = 129/388 (33%), Positives = 201/388 (51%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
+TVL L + G++P+S+G L L ++++ G+IP ++G +L DL L N LS
Sbjct: 228 LTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLS 287
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
G IP + T+L N +G IP+++ + + L++I L + L+G+IP+ +G S
Sbjct: 288 GSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSF 347
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNYF 254
L+ +++ N GSIP + S+L L +N IS ++G TL L +F N
Sbjct: 348 LEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELG-TLTKLTLFFAWSNQL 406
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL- 313
GSIP L++ ++LQ LD + N LTGTIP L++L +L N L F+
Sbjct: 407 EGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSG-------FIP 459
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIXXXXXXXX 373
+ + NC+SL L L N GE+P I +L + L N +HG +P I
Sbjct: 460 QEIGNCSSLVRLRLGFNRITGEIPSGIGSLKK-INFLDFSSNRLHGKVPDEIGSCSELQM 518
Query: 374 XXXXXXXXXXXXPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
P + L+ L+ L+++AN+FSG +P+SLG L L++L++ +N F GSI
Sbjct: 519 IDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSI 578
Query: 434 PPSLGNCKKLQVXXXXXXXXXGTIPKEV 461
P SLG C LQ+ G IP E+
Sbjct: 579 PTSLGMCSGLQLLDLGSNELSGEIPSEL 606
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 461 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-68 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-58 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-55 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-36 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-23 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 1e-11 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 9e-68
Identities = 150/434 (34%), Positives = 222/434 (51%), Gaps = 33/434 (7%)
Query: 29 LESATIEADKLALL-DFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLES 87
L + + A++L LL FK+ + DPL+ +S+WN S C W G+TC+ S+ RV + L
Sbjct: 21 LNFSMLHAEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSG 78
Query: 88 KQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL-QKLQDLNLTYNYLSGKIPTNL 146
K + G I ++I L + INL N+ G IP++I L+ LNL+ N +G IP
Sbjct: 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS 138
Query: 147 SHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206
L + + S N G+IP+ + S + L+++ LG + L G IP + N +SL+ L LA
Sbjct: 139 IPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196
Query: 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNAS 266
N L G IP ELGQ+ +LK G N +G IP + +
Sbjct: 197 SNQLVGQIPRELGQMK--------------------SLKWIYLGYNNLSGEIPYEIGGLT 236
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326
+L LD N LTG IP + G+LK+L L QN+L S I F + L L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-SGPIPPSIF-----SLQKLISLD 290
Query: 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386
L+ N GE+P + L L IL + N G IPV + +L L +L L N SG +P
Sbjct: 291 LSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349
Query: 387 EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVL 446
+ +G+ N L L+L+ N +G +P L + L +L++ N EG IP SLG C+ L+ +
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409
Query: 447 NLSSNNLNGTIPKE 460
L N+ +G +P E
Sbjct: 410 RLQDNSFSGELPSE 423
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 4e-58
Identities = 138/381 (36%), Positives = 190/381 (49%), Gaps = 30/381 (7%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+ L L S QLVG IP +G + +L I L N G+IP EIG L L L+L YN L
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248
Query: 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
+G IP++L + L+ N G IP + SL KL + L ++L+G IP V
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLT-LPNLKIFAGGVNYFTGS 257
+L++L L NN G IP V LT LP L++ N F+G
Sbjct: 309 NLEILHLFSNNFTGKIP---------------------VALTSLPRLQVLQLWSNKFSGE 347
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
IP +L +NL VLD + N LTG IPE S +L +L N L + K L
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL------EGEIPKSLG 401
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
C SL + L N F GE+P L + L + N + G I ++ +L +L L
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
N G +P+ G +LE L+L+ N+FSG +P LG+L+ L +L + EN+ G IP L
Sbjct: 461 RNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519
Query: 438 GNCKKLQVLNLSSNNLNGTIP 458
+CKKL L+LS N L+G IP
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIP 540
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-55
Identities = 131/379 (34%), Positives = 196/379 (51%), Gaps = 34/379 (8%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
L L L G IP+S+GNL NL + L+QN+ G IP I LQKL L+L+ N LSG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
P + L +N+F G+IP L SL +L++++L ++ +G IP +G ++L V
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360
Query: 203 LLLARNNLHGSIPNEL---GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259
L L+ NNL G IP L G L L F+ N G IP
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFS-----------------------NSLEGEIP 397
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
SL +L+ + +N +G +P F L + L+ N L G +N K+ +
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL----QGRINSRKW--DM 451
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
SL++L LA+N F G +P S S L L + N G +P + +L L L L N
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
LSG +P+ + KL L+L+ N+ SG +P+S + VLS+L + +N+ G IP +LGN
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569
Query: 440 CKKLQVLNLSSNNLNGTIP 458
+ L +N+S N+L+G++P
Sbjct: 570 VESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 104/334 (31%), Positives = 161/334 (48%), Gaps = 36/334 (10%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142
L L L G IP + L NL ++LF N F G+IP + L +LQ L L N SG+I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
P NL L + S N+ G+IP+ L S L + L +++L G IP +G SL+
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408
Query: 203 LLLARNNLHGSIPNELGQLSALGFFTLYEN----FISDVGLTLPNLKIFAGGVNYFTGSI 258
+ L N+ G +P+E +L + F + N I+ +P+L++ + N F G +
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
P S + L+ LD + N +G +P GSL +L++L +N+L S EI D L++
Sbjct: 469 PDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDE-----LSS 521
Query: 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378
C L L L+ N G++P S + + PV LS L L
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEM------------------PV-------LSQLDLSQ 556
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSS 412
N LSG +P+ +G + L + ++ N G +PS+
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 76 SNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTY 135
S+G + L L S L G IP S+G +L + L N F G++P E +L + L+++
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437
Query: 136 NYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVG 195
N L G+I + L+ + N F G +PD S +LE + L + +G +P +G
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLG 496
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT 255
+ S L L L+ N L G IP+EL L V L L + N +
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKL------------VSLDLSH--------NQLS 536
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
G IP S S L LD ++N L+G IP+N G+++ LV++N N L
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
LGL+ L G +P I +L L+ + L+ N G +P SLG++T L L + N F GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 434 PPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
P SLG L++LNL+ N+L+G +P +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 35/90 (38%), Positives = 51/90 (56%)
Query: 106 GINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQ 165
G+ L G IP +I +L+ LQ +NL+ N + G IP +L T L + S N F G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 166 IPDQLISLTKLEIIRLGTSNLTGNIPAWVG 195
IP+ L LT L I+ L ++L+G +PA +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 9e-13
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 325 LGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS 384
LGL G G +P I+ L HL+ + + N + GNIP + ++ +L +L L N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 385 VPEVIGRLNKLEGLELNANKFSGFMPSSLG 414
+PE +G+L L L LN N SG +P++LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 68 WVGVTC----SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG 123
W G C + + L L+++ L G IP I L +L INL N G IP +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 124 RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQL 170
+ L+ L+L+YN +G IP +L T LR + N G++P L
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 357 MHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNL 416
+ G IP I L +L + L GN++ G++P +G + LE L+L+ N F+G +P SLG L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 417 TVLSRLLMEENRFEGSIPPSLG 438
T L L + N G +P +LG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 164 GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSA 223
G IP+ + L L+ I L +++ GNIP +G+ +SL+VL L+ N+ +GSIP LGQL++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 224 LGFFTLYENFIS 235
L L N +S
Sbjct: 492 LRILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-11
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 37 DKLALLDFKNHLTQDPLQIMSSWNDS-VHFCNWVGVTCS 74
D+ ALL FK+ L DP +SSWN S C+W GVTC
Sbjct: 4 DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
R+ L L Q G++P +G+L+ L + L +N+ G+IP+E+ +KL L+L++N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
Query: 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
SG+IP + S L + S N L+G IP +GN
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQ------------------------LSGEIPKNLGNVE 571
Query: 199 SLQVLLLARNNLHGSIP 215
SL + ++ N+LHGS+P
Sbjct: 572 SLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 395 LEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
++GL L+ GF+P+ + L L + + N G+IPPSLG+ L+VL+LS N+ N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 455 GTIP 458
G+IP
Sbjct: 480 GSIP 483
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 210 LHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQ 269
L G IPN++ +L L L N I G+IP SL + ++L+
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIR--------------------GNIPPSLGSITSLE 469
Query: 270 VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
VLD + N G+IPE+ G L L LN + N L R
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLT 240
L L G IP + LQ + L+ N++ G+IP LG +++L L N
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS------- 477
Query: 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGS-LKDLVRLNFDQ 299
F GSIP SL ++L++L+ N L+G +P G L NF
Sbjct: 478 -------------FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524
Query: 300 N 300
N
Sbjct: 525 N 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 271 LDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
L GL G IP + L+ L +N N + N L + TSLEVL L+ N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------NIPPSLGSITSLEVLDLSYN 476
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362
F G +P S+ L T LRIL + N + G +P
Sbjct: 477 SFNGSIPESLGQL-TSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 74 SPSNGRVT---VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG-RLQKLQ 129
PS G +T VL L GSIP S+G LT+L +NL N G++P +G RL
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518
Query: 130 DLNLTYN 136
N T N
Sbjct: 519 SFNFTDN 525
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 12/214 (5%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCT-E 151
++ NL L ++L NR I E + L L L+L N ++ IP +
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141
Query: 152 LRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH 211
L+ + S N I +P L +L L+ + L ++L+ ++P + N S+L L L+ N +
Sbjct: 142 LKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199
Query: 212 GSIPNELGQLSALGFFTLYENFISDVGL---TLPNLKIFAGGVNYFTGSIPVSLSNASNL 268
+P E+ LSAL L N I ++ L NL N +P S+ N SNL
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257
Query: 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
+ LD + N + + + GSL +L L+ N L
Sbjct: 258 ETLDLSNNQI--SSISSLGSLTNLRELDLSGNSL 289
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.66 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.59 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.32 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.27 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.25 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.24 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.24 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.19 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.13 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.1 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.09 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.07 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.02 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.99 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.95 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.84 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.76 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.75 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.75 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.61 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.59 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.44 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.42 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.41 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.38 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.3 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.18 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.05 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.99 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.79 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.72 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.65 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.64 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.64 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.45 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.4 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.14 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.03 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.95 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.9 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.78 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.66 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.2 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.09 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.43 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.29 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.92 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.46 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.67 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.29 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.1 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.1 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.95 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 86.6 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.01 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 82.87 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=457.07 Aligned_cols=421 Identities=34% Similarity=0.535 Sum_probs=281.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCC
Q 037538 34 IEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR 113 (461)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~ 113 (461)
.+.|+.||++||+++. +|...+.+|....+||.|.||+|+.. ++|+.|+++++.+.+.++..+..+++|++|++++|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 5689999999999985 77777899998889999999999853 799999999999999999999999999999999999
Q ss_pred CcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc
Q 037538 114 FHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192 (461)
Q Consensus 114 ~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 192 (461)
+.+.+|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 9988887655 788888888888888766664 3466677777777777666666677777777777777766666666
Q ss_pred cCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh----hccCCCCCcEEEccCccCccccChhhcCCCCC
Q 037538 193 WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD----VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNL 268 (461)
Q Consensus 193 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 268 (461)
.+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.. ....+++|++|++++|.+++.+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 66666777777777776666666666666666666666665532 12345566666666666666666666666666
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc------------------hhhhhhcCCCCCCEEEccCC
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL------------------NFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------~~~~~l~~~~~L~~L~L~~n 330 (461)
++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 666666666665555555566666666666665554110000 22333444445555555555
Q ss_pred cCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCC
Q 037538 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410 (461)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 410 (461)
.+++.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus 343 ~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 343 KFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 55544554444443 45555555555555555555555555555555555555555555556666666666666666666
Q ss_pred hhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 6666666666666666666666666556666666666666666666664
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=403.44 Aligned_cols=374 Identities=34% Similarity=0.547 Sum_probs=281.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 46778888888887777877888888888888888887777777888888888888888777777777777778888888
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD- 236 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~- 236 (461)
++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+..
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 7777777777777777777777777777777777777777777777777777776677777777777777777666532
Q ss_pred ---hccCCCCCcEEEccCccCccccChhhcCC------------------------CCCCEEEcccccccccCCccCCCC
Q 037538 237 ---VGLTLPNLKIFAGGVNYFTGSIPVSLSNA------------------------SNLQVLDFAENGLTGTIPENFGSL 289 (461)
Q Consensus 237 ---~~~~l~~L~~L~l~~n~~~~~~~~~l~~~------------------------~~L~~L~l~~n~l~~~~~~~~~~l 289 (461)
....+++|+.+++++|.+++.+|..+..+ ++|++|++++|.+++..|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 12234555566666555555555555444 445555555555544444445555
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV 369 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 369 (461)
++|+.|++++|.+.+ ..+..+..+++|+.|++++|++.+.+|..+.. ++|+.|++++|.+++.+|..+..++
T Consensus 428 ~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 428 PLVYFLDISNNNLQG------RINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred CCCCEEECcCCcccC------ccChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCccChhhhhhh
Confidence 555555555555544 33344455677777777777777666655432 3788889999999888888889999
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEcc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls 449 (461)
+|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+.++++|+.++++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCC
Q 037538 450 SNNLNGTIPK 459 (461)
Q Consensus 450 ~N~l~~~ip~ 459 (461)
+|++.|.+|.
T Consensus 580 ~N~l~~~~p~ 589 (968)
T PLN00113 580 HNHLHGSLPS 589 (968)
T ss_pred CCcceeeCCC
Confidence 9999999985
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=288.12 Aligned_cols=381 Identities=22% Similarity=0.217 Sum_probs=287.6
Q ss_pred CCCCCcceeeEEecCCC--------------CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCC
Q 037538 61 DSVHFCNWVGVTCSPSN--------------GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQ 126 (461)
Q Consensus 61 ~~~~~c~w~gv~c~~~~--------------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 126 (461)
+.++.|.-.-..|+... ..++.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg 125 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG 125 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccc
Confidence 44455665556665321 35677888888887666677788888888888888887 7777666666
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|+.|+|.+|.++..-.+.+..++.|+.|||+.|.++..--..|..-.++++|+|++|.++..-...|..+.+|..|.++
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 78888888888775555677778888888888888875544566666788888888888886666677788888888888
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccC
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI 282 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 282 (461)
.|+++...+..|.++++|+.|++..|.+..+ +..+++|+.+.+..|.+...-...|..+.++++|+|+.|+++..-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 8888855556677788888888888888655 356778888888888887766677788888888888888888777
Q ss_pred CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCc
Q 037538 283 PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362 (461)
Q Consensus 283 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 362 (461)
..++.++..|+.|++++|.+....+. .+..+++|++|+|++|+++.--+..+..+. .|++|++++|.+.-.--
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHID------SWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAE 358 (873)
T ss_pred cccccccchhhhhccchhhhheeecc------hhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHh
Confidence 77888888888888888888774443 345578888888888888865566666665 78888888888775555
Q ss_pred hhhhcCCCCCeeecccCcCccccc---hhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCC
Q 037538 363 VGIENLVNLSLLGLEGNNLSGSVP---EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439 (461)
Q Consensus 363 ~~~~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 439 (461)
..|..+++|++|||++|.+...+- ..|.++++|+.|.+-+|++...--.+|..++.|+.|||.+|.|...-|..|..
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 567778888888888888865433 34667888888888888887554567888888888888888887777778877
Q ss_pred CCCCCEEEccC
Q 037538 440 CKKLQVLNLSS 450 (461)
Q Consensus 440 l~~L~~L~ls~ 450 (461)
+ .|+.|.+..
T Consensus 439 m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 M-ELKELVMNS 448 (873)
T ss_pred c-hhhhhhhcc
Confidence 7 677666543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=279.03 Aligned_cols=369 Identities=20% Similarity=0.203 Sum_probs=318.3
Q ss_pred CcEEEEEcCCCCcccccCccccCC--CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNL--TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSF 155 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 155 (461)
.+.+.+|.+++.+...-...+..+ ..-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 456788999888764333333322 44567999999999888888999999999999999998 899888888889999
Q ss_pred EccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 156 EASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 156 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
+|.+|.++..-.+++.-++.|+.|||+.|.++..--..+..-.++++|++++|.++..--..|..+.+|..|.+++|.++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 99999999888888999999999999999999544455666678999999999999877788999999999999999996
Q ss_pred hh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCch
Q 037538 236 DV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLN 311 (461)
Q Consensus 236 ~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 311 (461)
.+ +..++.|+.|++..|++.-.---.|..+++|+.|.+..|.+.......|..+.++++|+|+.|+++..
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v------ 284 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV------ 284 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh------
Confidence 54 45699999999999998754445788999999999999999887778899999999999999999873
Q ss_pred hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhc
Q 037538 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR 391 (461)
Q Consensus 312 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 391 (461)
-..++.+++.|+.|++++|.|...-+..+... ++|++|+++.|.++...+..+..+..|+.|.|++|.+...-...|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 34567889999999999999986555555544 49999999999999888889999999999999999999766677889
Q ss_pred CCCCCeeccccccCcccCCh---hhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 392 LNKLEGLELNANKFSGFMPS---SLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 392 ~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+++|+.|+|++|.++..+.+ .|..+++|+.|++.||++.....+.|.++..|+.||+.+|.|.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 99999999999999977654 5888999999999999999554569999999999999999986
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=277.96 Aligned_cols=354 Identities=27% Similarity=0.422 Sum_probs=280.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCC-CCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS-GKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ 156 (461)
.++++|.|...++. .+|..++.+.+|++|.+++|++. .+-..++.++.||.+++..|++. .-+|..+..+..|.+||
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 46778888777775 67888888888888888888877 55566778888888888888775 35788888899999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc-cCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA-WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|++|++. ..|..+..-.++-+|+|++|++. .+|. .+.+++.|-.||+++|.+. .+|+.+..+..|+.|.+++|.+.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 9999887 67888888888999999999888 5554 4568888889999999988 77888888999999999998875
Q ss_pred hhc----cCCCCCcEEEccCccCc-cccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc
Q 037538 236 DVG----LTLPNLKIFAGGVNYFT-GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL 310 (461)
Q Consensus 236 ~~~----~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 310 (461)
..- -.+..|+.|++++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|+++....
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~--- 262 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM--- 262 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec---
Confidence 432 23556777788876543 457888888889999999999887 678888888999999999998886432
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l 389 (461)
......+|++|+++.|+++ .+|+.+.+++ .|+.|.+.+|+++ .-+|.+++.+.+|+.+..++|.+. .+|+.+
T Consensus 263 ----~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 263 ----TEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred ----cHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence 2345578889999999988 7888888887 8999999888865 347888898999999988888887 888899
Q ss_pred hcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccC-CCCCCCCEEEcc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL-GNCKKLQVLNLS 449 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ls 449 (461)
++|..|+.|.|++|++. .+|++|.-++.|+.||+..|+-. +.|..- ..-++++.-++.
T Consensus 336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcchhhhcceeeecc
Confidence 99999999999999887 78999988899999999888755 333322 222455555444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-36 Score=270.13 Aligned_cols=364 Identities=27% Similarity=0.460 Sum_probs=253.8
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+++.++.+. +.|++++.+..++.++.++|++. ++|+.+..+.+|+.+++++|.+. .+|+.++.+..|..++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45778888888876 67778888888888888888887 78888888888888888888887 77777888888888887
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc---
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI--- 234 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--- 234 (461)
.+|+++ ..|+.++++.+|..+++.+|++.. +|....+++.|+++|...|.+. .+|..++.+.+|..|++..|.+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence 777776 566666666666666666666653 3333333566666666665555 5555666666665555555554
Q ss_pred -------------------h----hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCC
Q 037538 235 -------------------S----DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKD 291 (461)
Q Consensus 235 -------------------~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 291 (461)
. +....++.+..|++..|+++ +.|+.++.+.+|++||+++|.++ ..|..++++ +
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-e
Confidence 2 33456888999999999997 68899999999999999999998 577889999 9
Q ss_pred CCEEEcccCcCcccC-----------------------CC--------C-----ch----------------------hh
Q 037538 292 LVRLNFDQNELGSRE-----------------------IG--------D-----LN----------------------FL 313 (461)
Q Consensus 292 L~~L~L~~n~l~~~~-----------------------~~--------~-----~~----------------------~~ 313 (461)
|+.|.+.+|.+.... .. + +. .|
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 999999999754210 00 0 00 01
Q ss_pred hhh---cCCCCCCEEEccCCcCccccchHHHhcc-----------------------ccccEEEccCCcCcccCchhhhc
Q 037538 314 KFL---ANCTSLEVLGLAQNGFGGEMPISIANLS-----------------------THLRILTMGYNLMHGNIPVGIEN 367 (461)
Q Consensus 314 ~~l---~~~~~L~~L~L~~n~~~~~~~~~~~~~~-----------------------~~L~~L~l~~n~l~~~~p~~~~~ 367 (461)
... +.-.-++.++++.|++. ++|..+..+. ++|..|++++|.+. .+|..++.
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 100 01112566677777654 4444433332 25555666655554 45555555
Q ss_pred CCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEE
Q 037538 368 LVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLN 447 (461)
Q Consensus 368 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 447 (461)
+..|+.++++.|+|. ..|.++.....++.+-.++|++...-|..+.++.+|..||+.+|.+. .+|+.++++++|+.|+
T Consensus 457 lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE 534 (565)
T ss_pred hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence 555666666666665 55555555555555555556665444455889999999999999998 8999999999999999
Q ss_pred ccCCCCc
Q 037538 448 LSSNNLN 454 (461)
Q Consensus 448 ls~N~l~ 454 (461)
++||+|.
T Consensus 535 L~gNpfr 541 (565)
T KOG0472|consen 535 LDGNPFR 541 (565)
T ss_pred ecCCccC
Confidence 9999997
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-34 Score=273.94 Aligned_cols=361 Identities=25% Similarity=0.377 Sum_probs=317.9
Q ss_pred CcEEEEEcCCCCcc-cccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLV-GSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
+-|+.+|+++|.+. +.+|..+..++.++-|.|...++. .+|+.++.+.+|++|.+++|++. .+...++.++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 57899999999998 678999999999999999999887 89999999999999999999988 6777788999999999
Q ss_pred ccCCcCC-CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCc
Q 037538 157 ASANDFI-GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFI 234 (461)
Q Consensus 157 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l 234 (461)
+.+|++. .-+|+.+..+..|.+|+|++|++. ..|..+..-+++-.|++++|++. .+| ..+.++..|-.|++++|.+
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 9999875 358899999999999999999999 78998999999999999999998 455 5578899999999999999
Q ss_pred hhhc---cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccc-ccCCccCCCCCCCCEEEcccCcCcccCCCCc
Q 037538 235 SDVG---LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT-GTIPENFGSLKDLVRLNFDQNELGSREIGDL 310 (461)
Q Consensus 235 ~~~~---~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 310 (461)
..+. ..+..|++|.+++|.+...--..+-.+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+.
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------- 235 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------- 235 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-------
Confidence 7665 44678999999999875433334455678888889887543 458889999999999999999987
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVI 389 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l 389 (461)
..|..+.++++|+.|+|++|.++ ++........ +|+.|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-+|..+
T Consensus 236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred cchHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 56788889999999999999998 5666666665 8999999999998 69999999999999999999886 3589999
Q ss_pred hcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+.+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|+=.
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 99999999999999987 89999999999999999999988 79999999999999999999843
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-33 Score=253.68 Aligned_cols=364 Identities=27% Similarity=0.428 Sum_probs=277.6
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
.+..+++++|.+. .+.+.+.++..+..+++.+|++. +.|.+++++..++.++.++|++. .+|..++.+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4567889999886 55667899999999999999998 89999999999999999999998 899999999999999999
Q ss_pred CCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc
Q 037538 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (461)
+|.+. .+|+.++.+..|+.++..+|+++ ..|..++++.++..+++.+|++... |+....++.|+++++..|.+..+.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhcCC
Confidence 99987 68889999999999999999999 7899999999999999999999954 445555999999999999886654
Q ss_pred cC---CCCCcEEEccCccCcc---------------------ccChhhc-CCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 239 LT---LPNLKIFAGGVNYFTG---------------------SIPVSLS-NASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 239 ~~---l~~L~~L~l~~n~~~~---------------------~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
.. +.+|..|++..|.+.. .+|.... +++++..||+.+|+++ ..|+.+.-+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence 32 3444445555555431 2333332 5677777788887776 5677777777788
Q ss_pred EEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc---------------------------------------
Q 037538 294 RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--------------------------------------- 334 (461)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--------------------------------------- 334 (461)
+|++++|.+++ .+..++++ .|+.|-+.+|.+..
T Consensus 279 rLDlSNN~is~-------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 279 RLDLSNNDISS-------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhcccCCcccc-------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 88888887775 44456666 67777777764310
Q ss_pred -------------------------ccchHHHhcc--ccccEEEccCCcCc-----------------------ccCchh
Q 037538 335 -------------------------EMPISIANLS--THLRILTMGYNLMH-----------------------GNIPVG 364 (461)
Q Consensus 335 -------------------------~~~~~~~~~~--~~L~~L~l~~n~l~-----------------------~~~p~~ 364 (461)
.+|...+... .-....+++.|++. +.+|..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 0111111000 01334455555442 123445
Q ss_pred hhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCC
Q 037538 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQ 444 (461)
Q Consensus 365 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 444 (461)
++.+++|+.|+|++|.+. .+|..++.+..|+.|+++.|+|. ++|+.+.....++.+-.++|++....|..+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 566788888888887776 77888888888888888888887 7888888888888888888888866666799999999
Q ss_pred EEEccCCCCcccCCCC
Q 037538 445 VLNLSSNNLNGTIPKE 460 (461)
Q Consensus 445 ~L~ls~N~l~~~ip~~ 460 (461)
+||+.+|.+. +||+.
T Consensus 509 tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPI 523 (565)
T ss_pred eeccCCCchh-hCChh
Confidence 9999999996 78764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-30 Score=254.84 Aligned_cols=360 Identities=28% Similarity=0.368 Sum_probs=227.3
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
++..|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+...+.+|++++|.+|.+. .+|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999875 88999999999999999999998 78888999999999999999887 899999999999999999
Q ss_pred CCcCCCcCchhhcCCCCCc-------------------EEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhh
Q 037538 159 ANDFIGQIPDQLISLTKLE-------------------IIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~-------------------~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
+|.+. .+|..+..+..++ .+++..|.+.+.++..+.+++. .+++.+|.+. -..+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhh
Confidence 99886 5665555444444 4444445555555555555444 5788887775 23456
Q ss_pred cCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 220 QLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 220 ~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
.+++|+.+....|.+..+...-++++.+..+.|.++...+. .-..+|++++++.|.+++ +|+|++.+.+|+.++...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANH 273 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccc
Confidence 66777777777777765555555555555555555422111 122455556666555553 335555555555555555
Q ss_pred CcCcccCCCCc----------------hhhhhhcCCCCCCEEEccCCcCccccchHHHhcc-------------------
Q 037538 300 NELGSREIGDL----------------NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS------------------- 344 (461)
Q Consensus 300 n~l~~~~~~~~----------------~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~------------------- 344 (461)
|++...+..-+ .++......+.|++|+|..|++. .+|..+....
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 55533211000 12233344566666666666654 3332221110
Q ss_pred ------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCcc
Q 037538 345 ------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV 418 (461)
Q Consensus 345 ------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 418 (461)
+.|+.|++.+|.++...-..+.+++.|+.|+|++|++.......+.+++.|+.|+|++|+++ .+|+++.+++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 23555666666666555555666666666666666666332334556666666666666666 55666666666
Q ss_pred CCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 419 LSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++|...+|++. ..| .+.+++.|+.+|+|.|+++
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 666666666655 444 4555666666666666554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=236.35 Aligned_cols=360 Identities=21% Similarity=0.219 Sum_probs=280.3
Q ss_pred CcEEEEEcCCCCccc--ccCccccCCCCCCEEecCCCC------CcccCchhccCC-CCCCEEeCCCCCCCCCCCcCCCC
Q 037538 78 GRVTVLKLESKQLVG--SIPASIGNLTNLTGINLFQNR------FHGQIPEEIGRL-QKLQDLNLTYNYLSGKIPTNLSH 148 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~------~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~ 148 (461)
.+|+.+.+....+.. ..+.+|..+++|+.|.+..+. +...+|..+..+ .+|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666555443321 234568889999999997653 233467767665 47999999999887 788877 5
Q ss_pred CCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEe
Q 037538 149 CTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFT 228 (461)
Q Consensus 149 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 228 (461)
..+|+.|++.++++. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999876 5788888999999999998875556764 78899999999999987778999999999999999
Q ss_pred cCCC-Cchhhcc--CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 037538 229 LYEN-FISDVGL--TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 229 l~~n-~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
+++| .+..+.. .+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++.....
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 9986 3444332 5788999999999876666643 468999999999886 455544 578888888877543211
Q ss_pred CCCCch-hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc
Q 037538 306 EIGDLN-FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS 384 (461)
Q Consensus 306 ~~~~~~-~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 384 (461)
...... .+......++|+.|++++|...+.+|..+..++ +|+.|++++|...+.+|..+ .+++|+.|++++|.....
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 000000 011223457899999999988888999998887 99999999987666788765 789999999999877666
Q ss_pred cchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCC
Q 037538 385 VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 385 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
+|.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6653 368999999999998 789999999999999999966555788888999999999999996
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=229.53 Aligned_cols=317 Identities=20% Similarity=0.190 Sum_probs=233.1
Q ss_pred ccCccccCC-CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhc
Q 037538 93 SIPASIGNL-TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLI 171 (461)
Q Consensus 93 ~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 171 (461)
.+|..+..+ .+|+.|.+.++.+. .+|..| .+.+|++|++++|.+. .++..+..+++|+.++++++.....+|. +.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 455556655 45888999888776 677766 5688999999988887 6777888889999999988766556664 77
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc-hhhccCCCCCcEEEcc
Q 037538 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI-SDVGLTLPNLKIFAGG 250 (461)
Q Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~L~~L~l~ 250 (461)
.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.. ..+.....+|+.|+++
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 88899999998887666788888888999999999887666777655 688888998888743 3333445678888888
Q ss_pred CccCccccChhhcCCCCCCEEEccccccc-------ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 251 VNYFTGSIPVSLSNASNLQVLDFAENGLT-------GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
+|.+. .+|..+ .+++|++|++.++... ...+......++|+.|++++|.... .+|..+.++++|+
T Consensus 734 ~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------~lP~si~~L~~L~ 805 (1153)
T PLN03210 734 ETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPSSIQNLHKLE 805 (1153)
T ss_pred CCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc------ccChhhhCCCCCC
Confidence 88875 456544 5677888877764321 1111222345678888888886554 5667788888888
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
.|++++|...+.+|..+ .++ +|+.|++++|.....+|.. .++|+.|+|++|.+. .+|.++..+++|+.|++++|
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred EEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 88888876555666654 333 7888888888655555542 367888888888887 67888888888888888886
Q ss_pred cCcccCChhhhcCccCCeeeccccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 5544677777788888888888875
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-27 Score=236.13 Aligned_cols=330 Identities=28% Similarity=0.404 Sum_probs=160.0
Q ss_pred CCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccC
Q 037538 104 LTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGT 183 (461)
Q Consensus 104 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 183 (461)
|+.|++++|.+. ..|..+..+..|+.|+++.|.+. ..|.+..++.+|+++.|..|.+. ..|..+..+.+|++|++++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 455555544443 44444444445555555554444 44444444455555555444433 3444444455555555555
Q ss_pred CCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-hccCCCCCc-EEEccCccCccccChh
Q 037538 184 SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD-VGLTLPNLK-IFAGGVNYFTGSIPVS 261 (461)
Q Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~l~~L~-~L~l~~n~~~~~~~~~ 261 (461)
|.+. .+|..+..+..+..+..++|.... .+++.. ++.+++..|.+.. +......++ .+++.+|.+. . ..
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~--~d 194 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-V--LD 194 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh-h--hh
Confidence 4444 344444444444444444441111 111111 3333333333321 111122233 3666666554 1 12
Q ss_pred hcCCCCCCEEEcccccccccCC------------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 262 LSNASNLQVLDFAENGLTGTIP------------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
+..+.+|+.+....|++....- ..-....+|++++++.|++.. ++.++..+.+|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-------lp~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-------LPEWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-------chHHHHhcccce
Confidence 3344444444444444321100 001122456666666666663 457778888888
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh-------------
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG------------- 390 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~------------- 390 (461)
.++..+|+++ .+|..+.... +|+.+.+..|.+. .+|......+.|++|+|..|++. ..|+.+-
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence 8888888875 6666655554 5555555555555 34444555666666666666654 2232110
Q ss_pred -------------cCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCc-cCCCCCCCCEEEccCCCCccc
Q 037538 391 -------------RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 391 -------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~ 456 (461)
..+.|+.|++.+|.+++.....+.+.+.|+.|+|++|++. .+|. .+.++..|+.|++|||++. +
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-h
Confidence 1233455555555555544445555555555555555554 3332 4455555555555555554 4
Q ss_pred CC
Q 037538 457 IP 458 (461)
Q Consensus 457 ip 458 (461)
+|
T Consensus 422 Lp 423 (1081)
T KOG0618|consen 422 LP 423 (1081)
T ss_pred hh
Confidence 44
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=206.62 Aligned_cols=265 Identities=23% Similarity=0.286 Sum_probs=179.3
Q ss_pred CCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEEC
Q 037538 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (461)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++ .+|.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45668888888887 6777665 478888888888773 554 2578888888888887 45542 357888888
Q ss_pred ccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 206 ARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 206 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
++|.+. .+|.. ..+|+.|++++|.+..+....++|+.|++++|.+++ +|.. ..+|+.|++++|.+++ +|.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~- 339 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT- 339 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-
Confidence 888877 44432 246777888888887776666778888888887765 3331 2456777777777764 342
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
...+|+.|++++|+++..+. ..++|+.|++++|.++ .+|.. +.+|+.|++++|.+++ +|..
T Consensus 340 --lp~~Lq~LdLS~N~Ls~LP~----------lp~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 340 --LPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred --cccccceEecCCCccCCCCC----------CCcccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc-
Confidence 12467778888777765321 1245677777777776 35532 2367777777777764 4432
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccC
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (461)
.++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+.+++.|+.|++++|++++..|..+
T Consensus 401 --~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 --PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred --ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 256777777777776 45543 245677777777776 577777777777777777777777666654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-25 Score=199.18 Aligned_cols=361 Identities=19% Similarity=0.218 Sum_probs=225.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCC-CCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTY-NYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 156 (461)
...+.|+|..|+|+...+.+|..+++||+|||++|.|+..-|++|..+++|..|-+.+ |+|+......|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5789999999999977788999999999999999999988999999999998887666 888844445788999999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc------------ccCChhhhcCCCC
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH------------GSIPNELGQLSAL 224 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L 224 (461)
+.-|++.-...+.|..+++|..|.+..|.+...--..+..+..++++.+..|.+. ...|..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999998777888999999999999999988433347888889999999988742 1111122211111
Q ss_pred cEEecCCCCchhhcc--CCCCCcEE---EccCccCccccC-hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 037538 225 GFFTLYENFISDVGL--TLPNLKIF---AGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~--~l~~L~~L---~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 298 (461)
.-..+.++.+..+.. ....++.+ ..+.+...+..| ..|.++++|++|++++|.+++.-+.+|.+..+++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 111111111100000 00001111 011121222222 235555666666666666665555566666666666666
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCccc-----Cchhh--------
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN-----IPVGI-------- 365 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~-------- 365 (461)
.|++.. .-...|.++..|++|+|++|+++...|..|..+. .|.+|.+-.|++.-. +.+|+
T Consensus 307 ~N~l~~------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 307 RNKLEF------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred cchHHH------HHHHhhhccccceeeeecCCeeEEEecccccccc-eeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 665554 2234455556666666666666555555554444 555555555543100 00000
Q ss_pred ---hcCCCCCeeecccCcCcc------------------------------------ccchhhhcCCCCCeeccccccCc
Q 037538 366 ---ENLVNLSLLGLEGNNLSG------------------------------------SVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 366 ---~~l~~L~~L~Ls~n~l~~------------------------------------~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
+....++.+++++..+.. .+|..+. ..-+.+++.+|.++
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc
Confidence 112234555555543321 1222111 23567888888888
Q ss_pred ccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCC
Q 037538 407 GFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451 (461)
Q Consensus 407 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 451 (461)
.+|.. .+++| .+|+++|+++-.--..|.++++|.+|-+++|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67766 55777 8899999988555567888888888888876
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-22 Score=202.82 Aligned_cols=266 Identities=23% Similarity=0.279 Sum_probs=168.7
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34556777777776 5666554 36777777777776 45542 467777777777776 34432 356777777
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
++|.+. .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|.+..+......|+.|++++|.+++ +|..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCcccccccccccCcccc-cccc
Confidence 777766 34432 245677777777776 34432 356777777777776655444567777777777763 4431
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
..+|++|++++|.+++ +|.. .++|+.|++++|++...+ . ..++|+.|++++|.++ .+|..
T Consensus 341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP-------~---l~~~L~~LdLs~N~Lt-~LP~l-- 400 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-------A---LPSGLKELIVSGNRLT-SLPVL-- 400 (788)
T ss_pred ---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCc-------c---cccccceEEecCCccc-CCCCc--
Confidence 2467777777777764 3432 346677777777776422 1 1245777777777776 34432
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhh
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLG 414 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 414 (461)
+++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 401 --~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 --PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred --ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 2367777777777764 5532 245667777777776 6677777777777777777777776666553
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=189.86 Aligned_cols=339 Identities=21% Similarity=0.298 Sum_probs=194.2
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCC--CCCCCCCCCCCCcceee----------------EEecCCCCcEEEEEcCCCCcc
Q 037538 30 ESATIEADKLALLDFKNHLTQDPL--QIMSSWNDSVHFCNWVG----------------VTCSPSNGRVTVLKLESKQLV 91 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~l~ 91 (461)
.....+.+...+++..+.+.-.+. .....|..+.+.|.-.. |.|.. ..|+.+.+.+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~ 134 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccc
Confidence 445567788888888888752322 22345888888885433 44532 56666666553221
Q ss_pred ccc--CccccCCCCCCEEecCCCCCcccC---chhc-----cCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 92 GSI--PASIGNLTNLTGINLFQNRFHGQI---PEEI-----GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 92 ~~~--~~~l~~l~~L~~L~L~~n~~~~~~---~~~l-----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
... +....++...-. +-..+...+.. ...+ +...+...|++++++++ .+|..+. ++|+.|++++|+
T Consensus 135 ~~~~~~~~~~~~~~~w~-~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~ 210 (754)
T PRK15370 135 SSASGSKDAVNYELIWS-EWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNE 210 (754)
T ss_pred ccCCCCCChhhHHHHHH-HHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCC
Confidence 110 000000000000 00000000000 0000 11134456666666655 4454432 356666666666
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCC
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTL 241 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l 241 (461)
++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+..+...+
T Consensus 211 Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 211 LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL 281 (754)
T ss_pred CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcccccc
Confidence 55 3444433 35666666666665 3444332 35666666666665 4554443 35666666666665544333
Q ss_pred -CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCC
Q 037538 242 -PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 242 -~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~ 320 (461)
++|+.|++++|++++ +|..+. ++|++|++++|.++. +|..+ .++|+.|++++|.++..+ ..+ .+
T Consensus 282 ~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP-------~~l--~~ 346 (754)
T PRK15370 282 PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLP-------ASL--PP 346 (754)
T ss_pred CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCC-------hhh--cC
Confidence 367777777777764 443332 467888888888874 44433 267888888888877532 222 26
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhh----hcCCCCC
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI----GRLNKLE 396 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~~~~L~ 396 (461)
+|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+.
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred cccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 8888899888887 5665442 48889999999888 4666554 36888899999887 555543 3457788
Q ss_pred eeccccccCc
Q 037538 397 GLELNANKFS 406 (461)
Q Consensus 397 ~L~L~~n~l~ 406 (461)
.+++.+|.++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8999999887
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=187.27 Aligned_cols=245 Identities=22% Similarity=0.351 Sum_probs=150.4
Q ss_pred CCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecC
Q 037538 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY 230 (461)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 230 (461)
+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ..|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4566777776665 3555443 46777777777776 4555443 46777777777776 4555443 357777777
Q ss_pred CCCchhhccCC-CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCC
Q 037538 231 ENFISDVGLTL-PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD 309 (461)
Q Consensus 231 ~n~l~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 309 (461)
+|.+..+...+ .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++..+.
T Consensus 250 ~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~-- 321 (754)
T PRK15370 250 INRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE-- 321 (754)
T ss_pred CCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc--
Confidence 77776554322 35777777777776 3555443 467777777777764 343332 357777777777664221
Q ss_pred chhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhh
Q 037538 310 LNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 310 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l 389 (461)
.+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+
T Consensus 322 -----~l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 322 -----TL--PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred -----cc--cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence 11 256777777777776 3554432 36777777777776 3555442 56777777777776 455554
Q ss_pred hcCCCCCeeccccccCcccCChhh----hcCccCCeeeccccccc
Q 037538 390 GRLNKLEGLELNANKFSGFMPSSL----GNLTVLSRLLMEENRFE 430 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~ 430 (461)
. .+|+.|++++|+++ .+|+.+ ..++.+..+++.+|+++
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 35777777777776 445433 33466677777777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-20 Score=178.69 Aligned_cols=106 Identities=22% Similarity=0.165 Sum_probs=55.7
Q ss_pred EEecCCCCCcc-cCchhccCCCCCCEEeCCCCCCCC----CCCcCCCCCCCCCEEEccCCcCCC------cCchhhcCCC
Q 037538 106 GINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLSG----KIPTNLSHCTELRSFEASANDFIG------QIPDQLISLT 174 (461)
Q Consensus 106 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 174 (461)
.|+|..+.+++ .....+..+..|++|+++++.+++ .++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35666666652 344455566667777777777642 234445556667777776665541 1223344455
Q ss_pred CCcEEEccCCCCcccCCccCCCCCC---CCEEECccCCCc
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSS---LQVLLLARNNLH 211 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~~~ 211 (461)
+|+.|++++|.+.+..+..+..+.+ |++|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 5555555555554333332222222 555555555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-20 Score=179.40 Aligned_cols=277 Identities=22% Similarity=0.251 Sum_probs=178.4
Q ss_pred EEEccCCcCC-CcCchhhcCCCCCcEEEccCCCCccc----CCccCCCCCCCCEEECccCCCcc------cCChhhhcCC
Q 037538 154 SFEASANDFI-GQIPDQLISLTKLEIIRLGTSNLTGN----IPAWVGNFSSLQVLLLARNNLHG------SIPNELGQLS 222 (461)
Q Consensus 154 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 222 (461)
.|+|..+.+. ......+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777666 34555567778899999998887532 44456667778888888877752 1223344444
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCC---CCCEEEccccccccc----CCccCCCC-CCCCE
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNAS---NLQVLDFAENGLTGT----IPENFGSL-KDLVR 294 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~ 294 (461)
+|+.|+++ +|.+.+..+..+..+. +|++|++++|.+++. +...+..+ ++|+.
T Consensus 82 ~L~~L~l~--------------------~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLS--------------------DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEcc--------------------CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 55555554 4444433333333333 377788877776632 22334555 77888
Q ss_pred EEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc----chHHHhccccccEEEccCCcCccc----Cchhhh
Q 037538 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM----PISIANLSTHLRILTMGYNLMHGN----IPVGIE 366 (461)
Q Consensus 295 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~ 366 (461)
|++++|.+++.... .+...+..+++|++|++++|.+++.. +..+...+ +|+.|++++|.+.+. +...+.
T Consensus 142 L~L~~n~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 142 LVLGRNRLEGASCE--ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred EEcCCCcCCchHHH--HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhc
Confidence 88888877742211 34455667778888888888877432 22333333 788888888887643 334456
Q ss_pred cCCCCCeeecccCcCccccchhhhc-----CCCCCeeccccccCcc----cCChhhhcCccCCeeeccccccccc----C
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGR-----LNKLEGLELNANKFSG----FMPSSLGNLTVLSRLLMEENRFEGS----I 433 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~ 433 (461)
.+++|++|++++|.+++.....+.. .+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. +
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 6788999999998887633333322 3789999999998862 3345566678899999999998854 4
Q ss_pred CccCCCC-CCCCEEEccCCCC
Q 037538 434 PPSLGNC-KKLQVLNLSSNNL 453 (461)
Q Consensus 434 p~~l~~l-~~L~~L~ls~N~l 453 (461)
.+.+... +.|+.+++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 4444444 6888999988875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-21 Score=172.77 Aligned_cols=297 Identities=21% Similarity=0.204 Sum_probs=189.0
Q ss_pred cCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccC-CCCcccCCccCC
Q 037538 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGT-SNLTGNIPAWVG 195 (461)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~ 195 (461)
++|..+- +.-..++|..|+|+...|.+|+.+++||.|||++|.++..-|++|.+++.|..|-+.+ |++++.--..|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4554332 2556888999999966667899999999999999999999999999999987777666 888855556788
Q ss_pred CCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccc
Q 037538 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275 (461)
Q Consensus 196 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 275 (461)
++.+|+.|.+.-|++.......+..++++..|.+..|.+..+.. .++..+..++.+.+..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~--------------------~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK--------------------GTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc--------------------ccccchhccchHhhhc
Confidence 89999999999999887777788888888777777776655443 2455566777777776
Q ss_pred ccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCC
Q 037538 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355 (461)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n 355 (461)
|.+-. ..+++.+....-. .+..++......-..+.+.++...-+..+.....++..--.+.+
T Consensus 198 np~ic-----dCnL~wla~~~a~-------------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d 259 (498)
T KOG4237|consen 198 NPFIC-----DCNLPWLADDLAM-------------NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED 259 (498)
T ss_pred Ccccc-----ccccchhhhHHhh-------------chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence 65421 1222222211111 11111122222222233333321212222111001111111122
Q ss_pred cCcccCc-hhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCC
Q 037538 356 LMHGNIP-VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434 (461)
Q Consensus 356 ~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 434 (461)
..-+..| ..|..+++|++|+|++|.+++.-+.+|.+...++.|.|..|++...-...|.+++.|+.|+|++|+|+...|
T Consensus 260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 260 FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 2222223 246677777777777777777777777777777777777777765555567777777777777777777777
Q ss_pred ccCCCCCCCCEEEccCCCC
Q 037538 435 PSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l 453 (461)
..|..+.+|.+|++-+|++
T Consensus 340 ~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccccceeeeeehccCcc
Confidence 7777777777777777766
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-19 Score=143.72 Aligned_cols=183 Identities=28% Similarity=0.488 Sum_probs=143.4
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
+..+++++.|.+++|.++ .+|+.+..+.+|+.|++++|+++ +.|..++.+++|+.|++.-|++. .+|..++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------~lp~~issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------ELPTSISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------hcChhhhhchhhhheecchhhhh-cCccccC
Confidence 445677778888888887 55667778888888888888887 45666777888888888888776 6777777
Q ss_pred hccccccEEEccCCcCcc-cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHG-NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 420 (461)
.++ .|+.|+++.|.+.. .+|..|..+..|+.|+|++|.|. .+|..++++++|+.|.+.+|.+. .+|..++.+.+|+
T Consensus 100 s~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred CCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 776 78888888887753 57888888888999999999998 78888899999999999999887 7888899999999
Q ss_pred eeecccccccccCCccCCCCC---CCCEEEccCCCCcccC
Q 037538 421 RLLMEENRFEGSIPPSLGNCK---KLQVLNLSSNNLNGTI 457 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~i 457 (461)
+|.+++|+++ .+|..++++. +=+.+.+..|++...|
T Consensus 177 elhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 9999999998 7777776653 2345666667665443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-18 Score=140.88 Aligned_cols=153 Identities=29% Similarity=0.516 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|.+++|.++ .+|+.++.+.+|+.|++++|+++ ++|.+++.+++|+.|+++-|++. .+|..|+.++.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 46777777777776 66777777888888888888776 67777788888888888777776 77777888888888888
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
.+|.+.. .+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+..|++|++.+|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 8777753 46667777777777888887777 67777777788888887777776 67777777777777777666554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=149.61 Aligned_cols=154 Identities=31% Similarity=0.491 Sum_probs=118.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC----cceeeEEecCC--C--CcEEEEEcCCCCcccccCccccCC
Q 037538 30 ESATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHF----CNWVGVTCSPS--N--GRVTVLKLESKQLVGSIPASIGNL 101 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~--~--~~v~~L~l~~~~l~~~~~~~l~~l 101 (461)
...+.+.|..||..+|+++. .+.. .+|... .| |.|.|+.|... . ..|+.|+|+++.+.|.+|..+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 33456778999999999885 3322 378643 22 27999999532 1 258888888888888888888888
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCC-CCCcEEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISL-TKLEIIR 180 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~ 180 (461)
++|+.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..++++++|++|++++|.+++.+|..++.. .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 888888888888888888888888888888888888888888888888888888888888888888877653 4566677
Q ss_pred ccCCCCc
Q 037538 181 LGTSNLT 187 (461)
Q Consensus 181 l~~n~l~ 187 (461)
+.+|...
T Consensus 522 ~~~N~~l 528 (623)
T PLN03150 522 FTDNAGL 528 (623)
T ss_pred ecCCccc
Confidence 7766543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-14 Score=135.32 Aligned_cols=177 Identities=25% Similarity=0.422 Sum_probs=135.5
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
..-...|++.|++. .+|..+..+..|+.+.++.|.+. .++..+.++..|+.++|+.|.++ .+|..++.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp- 144 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP- 144 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-
Confidence 34455667777765 56666666667777777777666 45566677777888888888877 6777777774
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
|+.|-+++|+++ .+|+.++..+.|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|+.+.. =.|..||++
T Consensus 145 -Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 145 -LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred -ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 888888888887 57777888888888888888887 77888888888888888888887 67777774 447888888
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.|+++ .+|-+|.+++.|++|-|.+|++. +-|.
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 88888 78888888888888888888885 4443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=121.62 Aligned_cols=179 Identities=35% Similarity=0.540 Sum_probs=100.0
Q ss_pred CCCCCEEEcccccccccCCccCCCCC-CCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 265 ASNLQVLDFAENGLTGTIPENFGSLK-DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.+.++.|++.+|.++ .++....... +|+.|++++|++.. ++..+..+++|+.|++++|++. .+|......
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-------LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL 185 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchhh-------hhhhhhccccccccccCCchhh-hhhhhhhhh
Confidence 345556666665555 3333344442 56666666665542 2234455566666666666665 344333233
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeee
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL 423 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 423 (461)
+ .|+.|++++|+++ .+|..+.....|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..++.++.++.|+
T Consensus 186 ~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 186 S-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred h-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 3 5666666666665 34444444445666666666433 34445566666666666666665 2355566666666666
Q ss_pred cccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 424 MEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 424 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+++|+++. ++. +....+++.|++++|.+...+|
T Consensus 262 ~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 262 LSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 66666663 333 6666666666666666654443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.6e-13 Score=119.18 Aligned_cols=90 Identities=28% Similarity=0.414 Sum_probs=49.7
Q ss_pred cccCCCCCCEEecCCCCCccc----CchhccCCCCCCEEeCCCCCCCC----CCCcC-------CCCCCCCCEEEccCCc
Q 037538 97 SIGNLTNLTGINLFQNRFHGQ----IPEEIGRLQKLQDLNLTYNYLSG----KIPTN-------LSHCTELRSFEASAND 161 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------~~~l~~L~~L~l~~n~ 161 (461)
.+..+..+++++|++|.|.-. +...+.+.++|+..++++- ++| .+|.. +..+++|+++|||+|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344566677777777766422 3344555667777766653 222 23322 3345567777777776
Q ss_pred CCCcCchh----hcCCCCCcEEEccCCCCc
Q 037538 162 FIGQIPDQ----LISLTKLEIIRLGTSNLT 187 (461)
Q Consensus 162 ~~~~~~~~----l~~l~~L~~L~l~~n~l~ 187 (461)
+-...+.. +.++..|++|++.+|.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 64333332 345566666666666554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=126.65 Aligned_cols=113 Identities=33% Similarity=0.539 Sum_probs=97.0
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
.++.|++++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998899889999999999999999998999889999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCC-CCCCEEEccCCCCcccCC
Q 037538 426 ENRFEGSIPPSLGNC-KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~ip 458 (461)
+|+++|.+|..+... .++..+++.+|+....+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999887653 467788888887655444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-12 Score=115.45 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred cccEEEccCCcCcc----cCchhhhcCCCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcccCChhh----
Q 037538 346 HLRILTMGYNLMHG----NIPVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSGFMPSSL---- 413 (461)
Q Consensus 346 ~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~---- 413 (461)
.|+.+.++.|.+.. .+-..+..++.|++|||.+|.|+.. +...+..+++|+.|++++|.+......+|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 45555555554431 1223455666666666666666532 33445556666677777766653332222
Q ss_pred h-cCccCCeeeccccccccc----CCccCCCCCCCCEEEccCCCC
Q 037538 414 G-NLTVLSRLLMEENRFEGS----IPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 414 ~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l 453 (461)
. ..+.|+++.+.+|.|+.. +..++...+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 246677777777766531 223344456677777777766
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-11 Score=116.97 Aligned_cols=176 Identities=28% Similarity=0.442 Sum_probs=86.6
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc---CCCCCcEEE
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL---TLPNLKIFA 248 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~l~~L~~L~ 248 (461)
++.++.+++.+|.++ .++......+ +|+.|++++|.+. .+|..++.+++|+.|++++|.+.++.. ..++|+.++
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344555555555544 3333333342 5555555555554 333444555555555555555544332 334444444
Q ss_pred ccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEcc
Q 037538 249 GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328 (461)
Q Consensus 249 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 328 (461)
+++|.++ .+|..+.....|+++.+++|... ..+..+..+.++..+.+..|++.. .+..+..+++++.|+++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-------~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-------LPESIGNLSNLETLDLS 263 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-------ccchhccccccceeccc
Confidence 4544444 24444444555777777777422 234445556666666666665542 13334455556666666
Q ss_pred CCcCccccchHHHhccccccEEEccCCcCcccCc
Q 037538 329 QNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362 (461)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 362 (461)
+|.++ .++. +.... +++.++++++.+....|
T Consensus 264 ~n~i~-~i~~-~~~~~-~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 NNQIS-SISS-LGSLT-NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-cccc-ccccC-ccCEEeccCccccccch
Confidence 65554 2222 33333 55555555555554333
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-11 Score=125.45 Aligned_cols=128 Identities=25% Similarity=0.305 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCC--CcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR--FHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
.++++.+-++.+. .++.. ...++|+.|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+||+|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4455555555443 22222 123356666666664 3322333456677777777776655556777777777777777
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
++++.+. .+|..++++.+|.+|++..+.....+|.....+.+|++|.+....
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777665 667777777777777777665444445555556777777766544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-11 Score=113.41 Aligned_cols=209 Identities=21% Similarity=0.148 Sum_probs=139.5
Q ss_pred cCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccccccccC--CccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 239 LTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTI--PENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 239 ~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
..+.+|+.+.+.++....... .....+++++.||++.|-+.... ......+|+|+.|+++.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 346678888888776542211 45677889999999998776432 2345678899999999998765322111
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc--hhhhcCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP--EVIGRLN 393 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~~~ 393 (461)
-.-+++|+.|.++.|+++..--.++....|+++.|++..|...+.-.....-+..|+.|||++|++.. .+ ...+.++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence 12457888889999888743333343334588999998885322222233445678889999988873 33 3456788
Q ss_pred CCCeeccccccCccc-CChh-----hhcCccCCeeecccccccccCC--ccCCCCCCCCEEEccCCCCc
Q 037538 394 KLEGLELNANKFSGF-MPSS-----LGNLTVLSRLLMEENRFEGSIP--PSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~ls~N~l~ 454 (461)
.|+.|+++.|.+... .|+. -..+++|+.|++..|+|. ..+ ..+..+++|+.|.+..|.++
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 888888888887633 2333 345788999999999886 333 24556677788888888775
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-12 Score=122.61 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=85.6
Q ss_pred cEEecCCCCchhhccC---CCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 037538 225 GFFTLYENFISDVGLT---LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE 301 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~---l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (461)
...+++.|.+.++... +..|+.+.+..|.+. .+|..++++..|..+|++.|+++ .+|..+..+ -|+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence 3455566655444321 223444444444443 34555555556666666666554 344444433 25555555555
Q ss_pred CcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcC
Q 037538 302 LGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNL 381 (461)
Q Consensus 302 l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 381 (461)
++. ++..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.+..|.+. .+|+.+..++ |..||+|.|++
T Consensus 155 l~~-------lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 155 LTS-------LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred ccc-------CCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCce
Confidence 553 2333344455555555555554 4455555544 5555555555554 3444444332 55555555555
Q ss_pred ccccchhhhcCCCCCeeccccccCc
Q 037538 382 SGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 382 ~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
. .+|.+|.+++.|++|-|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 5 55555555555555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=97.80 Aligned_cols=126 Identities=24% Similarity=0.320 Sum_probs=44.6
Q ss_pred cCCCCCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhh-cCCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQL-ISLTKL 176 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L 176 (461)
.+..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++. +.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 44556788888888876 332 354 5678888888888887 343 57778888888888888874 33344 357888
Q ss_pred cEEEccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEec
Q 037538 177 EIIRLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTL 229 (461)
Q Consensus 177 ~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l 229 (461)
++|++++|++... .-..+..+++|++|++.+|.+...-- ..+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888887642 12345667888888888887763321 23456666666554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-11 Score=106.93 Aligned_cols=133 Identities=28% Similarity=0.308 Sum_probs=108.4
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..++.|+++|+++|.++ .+.++..-.+ .++.|++++|.++.. ..+..+++|+.||||+|.++ .+-.|=..+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 344578999999999987 6766665554 999999999999843 34888999999999999998 556666678899
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccccccC-CccCCCCCCCCEEEccCCCCcc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI-PPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+.|.|++|.+. .-..+..+.+|..||+++|+|.... -..+++++-|+.+.+.+|++.+
T Consensus 355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999999885 2346677889999999999997432 2478999999999999999975
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-11 Score=112.11 Aligned_cols=207 Identities=23% Similarity=0.227 Sum_probs=152.0
Q ss_pred hhcCCCCcEEecCCCCchhh-----ccCCCCCcEEEccCccCccccC--hhhcCCCCCCEEEcccccccccCCcc-CCCC
Q 037538 218 LGQLSALGFFTLYENFISDV-----GLTLPNLKIFAGGVNYFTGSIP--VSLSNASNLQVLDFAENGLTGTIPEN-FGSL 289 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~-----~~~l~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l 289 (461)
=.++.+|+...+.+...... ...+++++.|+++.|-+....+ .....+++|+.|+++.|.+....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34667888888888776544 3568999999999998875433 45677899999999999987543332 2367
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC-chhhhcC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI-PVGIENL 368 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l 368 (461)
++|++|.++.|.++-. .+...+..+|+|+.|++.+|.......... +....|+.|++++|++.... -...+.+
T Consensus 197 ~~lK~L~l~~CGls~k-----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK-----DVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHH-----HHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccccccccccccc
Confidence 8999999999998742 445566789999999999995322211111 22238999999999976422 1346788
Q ss_pred CCCCeeecccCcCccc-cchh-----hhcCCCCCeeccccccCcccCC--hhhhcCccCCeeecccccccc
Q 037538 369 VNLSLLGLEGNNLSGS-VPEV-----IGRLNKLEGLELNANKFSGFMP--SSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~-~~~~-----l~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+.|+.|.++.+.+... .|+. ...+++|++|+++.|++. .++ ..+..+++|+.|.+..|.++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 9999999999988743 2322 356899999999999996 233 356677888999988888874
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-10 Score=121.11 Aligned_cols=295 Identities=21% Similarity=0.215 Sum_probs=167.4
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC--CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY--LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 176 (461)
.+....+...+.+|.+. .++... .+++|++|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34467788888888775 444433 44589999998886 442333457789999999999988778999999999999
Q ss_pred cEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh------hccCCCCCcEEEcc
Q 037538 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD------VGLTLPNLKIFAGG 250 (461)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------~~~~l~~L~~L~l~ 250 (461)
++|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+....... ....+..|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999998 899999999999999999988766667777779999999886543210 01223444444432
Q ss_pred CccCccccChhhcCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEE
Q 037538 251 VNYFTGSIPVSLSNASNLQ----VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 326 (461)
.... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.........-......++++..+.
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 2221 0001111122222 2222222211 2334566677777777777766542211000000000112222222
Q ss_pred ccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccc
Q 037538 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELN 401 (461)
Q Consensus 327 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~ 401 (461)
+..+... ..+.+. ..+++|+.+++..+.....+......+..+..+.+..+.+.+. .-...+.++++..+.+.
T Consensus 754 ~~~~~~~-r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 754 ILNCHML-RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred hhccccc-cccchh-hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 2222111 111111 2234677777776665444443444445555555555555543 23333444444443333
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-10 Score=103.46 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=35.6
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeec
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLM 424 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 424 (461)
+|+.|++++|.++. +..+-..+.+.+.|.|+.|.+.. + ..+..+-+|.+|++++|++...- ...++++|.|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 44444444444432 22233344444455555544431 1 22344444555555555543211 123445555555555
Q ss_pred cccccc
Q 037538 425 EENRFE 430 (461)
Q Consensus 425 ~~n~l~ 430 (461)
.+|++.
T Consensus 407 ~~NPl~ 412 (490)
T KOG1259|consen 407 TGNPLA 412 (490)
T ss_pred cCCCcc
Confidence 555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-10 Score=95.41 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=33.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCcCCC-CCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccC-CCCCC
Q 037538 122 IGRLQKLQDLNLTYNYLSGKIPTNLS-HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSS 199 (461)
Q Consensus 122 l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~ 199 (461)
+.++.++++|+|++|.++ .+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 345557788888888877 33 3455 577888888888887642 356677888888888888874 33333 35778
Q ss_pred CCEEECccCCCcccC-ChhhhcCCCCcEEecCCCCch
Q 037538 200 LQVLLLARNNLHGSI-PNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 200 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|++|++++|++...- -..+..+++|+.|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 888888888776321 134556666666666666553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-09 Score=75.42 Aligned_cols=61 Identities=36% Similarity=0.536 Sum_probs=43.0
Q ss_pred CCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCC
Q 037538 393 NKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 393 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 453 (461)
++|++|++++|+++...++.|..+++|+.|++++|.++...|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556677777777777777777766666777777777777777764
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-09 Score=106.69 Aligned_cols=245 Identities=29% Similarity=0.323 Sum_probs=114.8
Q ss_pred CCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEE
Q 037538 148 HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFF 227 (461)
Q Consensus 148 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 227 (461)
.+..++.+++..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 44555555666665542 23335666677777777776663 2222555666666666666665322 23334444444
Q ss_pred ecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCcccC
Q 037538 228 TLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP-ENFGSLKDLVRLNFDQNELGSRE 306 (461)
Q Consensus 228 ~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 306 (461)
++.+|.+..+. .+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+....
T Consensus 146 ~l~~N~i~~~~----------------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 146 NLSGNLISDIS----------------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred eeccCcchhcc----------------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 44444443322 12335666677777776654333 1 355566666666666554321
Q ss_pred CCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc
Q 037538 307 IGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386 (461)
Q Consensus 307 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 386 (461)
.+.....+..+++..|.++..-+....... +|+.+++.+|.+.. .+..+..+..+..+++++|++...
T Consensus 203 --------~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~-- 270 (414)
T KOG0531|consen 203 --------GLDLLKKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL-- 270 (414)
T ss_pred --------chHHHHHHHHhhcccccceeccCcccchhH-HHHHHhcccCcccc-ccccccccccccccchhhcccccc--
Confidence 111222333335555554421110000000 15555555555542 223344455555555555555432
Q ss_pred hhhhcCCCCCeeccccccCccc--C-Chh-hhcCccCCeeecccccccc
Q 037538 387 EVIGRLNKLEGLELNANKFSGF--M-PSS-LGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 387 ~~l~~~~~L~~L~L~~n~l~~~--~-~~~-~~~l~~L~~L~l~~n~l~~ 431 (461)
..+.....+..+..+.|.+... . ... ....+.++.+.+.+|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 1223334444455555544311 0 111 2233445555555555443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-09 Score=73.36 Aligned_cols=59 Identities=32% Similarity=0.495 Sum_probs=30.6
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+|++|++++|++....+..|.++++|++|++++|+++...+++|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444555555555555555554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-10 Score=109.03 Aligned_cols=132 Identities=27% Similarity=0.322 Sum_probs=92.3
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+..++.+++..|.+. .+-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34566677777777776 33344677888888888888887 4444467788888888888888654 34566677888
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhh
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
|++++|.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+++..|.+..+
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 8888888873 2345557888888888888874333 1 46677777777777776543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-09 Score=97.42 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=119.2
Q ss_pred CCcEEEccCccCccc-cChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc-CcccCCCCchhhhhhcCCC
Q 037538 243 NLKIFAGGVNYFTGS-IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE-LGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~~~ 320 (461)
.++.++++...++.. .-.-+..|.+|+.|.+.++++++.+...+..-.+|+.++++.+. ++. +.....+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhh
Confidence 355555555544421 22345667788888888888877777777777888888887642 332 24455677888
Q ss_pred CCCEEEccCCcCccc-cchHHHhccccccEEEccCCcC--cc-cCchhhhcCCCCCeeecccCcC-ccccchhhhcCCCC
Q 037538 321 SLEVLGLAQNGFGGE-MPISIANLSTHLRILTMGYNLM--HG-NIPVGIENLVNLSLLGLEGNNL-SGSVPEVIGRLNKL 395 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~-~~~~~~~~~~~L~~L~l~~n~l--~~-~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~~~~L 395 (461)
.|.+|+++.+....+ +...+....++|+.|+++++.- .. .+..-...+++|.+||||+|.. +......|.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 888888888865433 2333444455788888887741 11 1222235789999999998754 43444567788999
Q ss_pred CeeccccccCcccCChh---hhcCccCCeeecccccc
Q 037538 396 EGLELNANKFSGFMPSS---LGNLTVLSRLLMEENRF 429 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l 429 (461)
++|.++.|.. .+|+. +...|+|.+|++.++-=
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 9999998875 46654 45568899998877643
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-08 Score=62.10 Aligned_cols=40 Identities=50% Similarity=0.977 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCcceeeEEec
Q 037538 35 EADKLALLDFKNHLTQDPLQIMSSWNDS--VHFCNWVGVTCS 74 (461)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 74 (461)
++|++||++||.++..+|...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987777889999987 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-08 Score=88.63 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCCCEEeCCCCCCCC--CCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCccc-CCccCCCCCCCCE
Q 037538 126 QKLQDLNLTYNYLSG--KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGN-IPAWVGNFSSLQV 202 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 202 (461)
+.++.+||.+|.++. .+.+.+.+++.|++|+++.|.+...+-..-....+|++|-|.+..+... ....+..+|++++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 344444444444432 2222233444444444444444321111002233444444444443321 1222334455555
Q ss_pred EECccC
Q 037538 203 LLLARN 208 (461)
Q Consensus 203 L~l~~n 208 (461)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-08 Score=77.63 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=74.7
Q ss_pred hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCC
Q 037538 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK 394 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 394 (461)
.+.....|+..++++|.+. .+|..+...++.++.+++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+
T Consensus 48 ~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 3344455666677777766 556666555556777777777777 46777777788888888888777 55666666777
Q ss_pred CCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc
Q 037538 395 LEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436 (461)
Q Consensus 395 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (461)
+-+|+..+|..- .+|.++-.-+..-..++.++++.+.-+..
T Consensus 125 l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 125 LDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 777777777766 45544333233333344555565554443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-07 Score=82.81 Aligned_cols=193 Identities=23% Similarity=0.255 Sum_probs=112.9
Q ss_pred hhcCCCCCCEEEcccccccccCCc----cCCCCCCCCEEEcccCcCcccCCCC-------chhhhhhcCCCCCCEEEccC
Q 037538 261 SLSNASNLQVLDFAENGLTGTIPE----NFGSLKDLVRLNFDQNELGSREIGD-------LNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 261 ~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~~~~l~~~~~L~~L~L~~ 329 (461)
.+.+|+.|+..++++|.+....|+ .+.+-..|++|.+++|.+....-.. .....-..+-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345566666666666666544443 2345556666666666554321110 01112234557788888888
Q ss_pred CcCccccchH----HHhccccccEEEccCCcCcccC-----chhhhcCCCCCeeecccCcCccc----cchhhhcCCCCC
Q 037538 330 NGFGGEMPIS----IANLSTHLRILTMGYNLMHGNI-----PVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLE 396 (461)
Q Consensus 330 n~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~ 396 (461)
|++- ..+.. ....-..|+.+.+.+|.+...- -..+..+.+|+.||+.+|.|+-. +...++.++.|+
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 8764 22221 1111136788888888765321 12345678888999999888743 334455677788
Q ss_pred eeccccccCcccCChh----hh--cCccCCeeecccccccccCCccC-------CCCCCCCEEEccCCCCc
Q 037538 397 GLELNANKFSGFMPSS----LG--NLTVLSRLLMEENRFEGSIPPSL-------GNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~----~~--~l~~L~~L~l~~n~l~~~~p~~l-------~~l~~L~~L~ls~N~l~ 454 (461)
.|.+..|-++.....+ |. ..+.|..|...+|.+.+.+...+ ..++-|..|-+.||.|.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 8888888877443332 22 24778888888887765443321 34566666777777765
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-09 Score=103.86 Aligned_cols=125 Identities=26% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchh-hhcCCCCCeec
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEV-IGRLNKLEGLE 399 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~~~~L~~L~ 399 (461)
.|...++++|.+. .+...+.-++ .++.|+|++|+++.. ..+..++.|++|||+.|.+. .+|.. ..++. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4555556666554 3444444333 666666666666532 25566666666666666665 33321 22233 66666
Q ss_pred cccccCcccCChhhhcCccCCeeecccccccccCC-ccCCCCCCCCEEEccCCCC
Q 037538 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP-PSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l 453 (461)
+++|.++. -..+.++++|+.||+++|-+.+.-. .-+..+..|+.|.|.||++
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666652 2345566666666666666654211 1223445566666666665
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-07 Score=82.91 Aligned_cols=188 Identities=22% Similarity=0.303 Sum_probs=95.1
Q ss_pred CCCCCCEEecCCCCCccc----CchhccCCCCCCEEeCCCCCCCC----CCC-------cCCCCCCCCCEEEccCCcCCC
Q 037538 100 NLTNLTGINLFQNRFHGQ----IPEEIGRLQKLQDLNLTYNYLSG----KIP-------TNLSHCTELRSFEASANDFIG 164 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p-------~~~~~l~~L~~L~l~~n~~~~ 164 (461)
.+..++.++||+|.|... +...+.+-.+|+..+++.- ++| .++ ..+..|++|+..+||+|.|..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 456666777777766433 3333445566666666543 222 122 234567777888888777765
Q ss_pred cCchh----hcCCCCCcEEEccCCCCcccCCcc-------------CCCCCCCCEEECccCCCcccCChh-----hhcCC
Q 037538 165 QIPDQ----LISLTKLEIIRLGTSNLTGNIPAW-------------VGNFSSLQVLLLARNNLHGSIPNE-----LGQLS 222 (461)
Q Consensus 165 ~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~ 222 (461)
..|+. ++.-+.|++|.+++|.+...--.- ..+-|.|+++....|++.. .+.. +..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence 55543 456677888888777665211111 1233566666666666542 1111 11122
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccccc----CCccCCCCCCCCEEEcc
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFD 298 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~ 298 (461)
+|+.+.+..|.|..-+. +-.+-..+..+.+|+.||+.+|.++-. +...+..++.|+.|.+.
T Consensus 186 ~lk~vki~qNgIrpegv---------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 186 NLKEVKIQQNGIRPEGV---------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred CceeEEeeecCcCcchh---------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 34444444433321110 000111234456677777777766532 22234455556666666
Q ss_pred cCcCcc
Q 037538 299 QNELGS 304 (461)
Q Consensus 299 ~n~l~~ 304 (461)
.|-+..
T Consensus 251 DClls~ 256 (388)
T COG5238 251 DCLLSN 256 (388)
T ss_pred chhhcc
Confidence 665544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-09 Score=103.87 Aligned_cols=127 Identities=28% Similarity=0.317 Sum_probs=75.8
Q ss_pred CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccc
Q 037538 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTH 346 (461)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~ 346 (461)
.|...+.+.|.+. .....+.-++.++.|+|+.|+++. .+.+..+++|+.|||++|.+. .+|. +.....+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--------v~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--------VDNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--------hHHHHhcccccccccccchhc-cccc-cchhhhh
Confidence 4556666666654 233455556667777777776654 235566677777777777665 3332 1111125
Q ss_pred ccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccccccCc
Q 037538 347 LRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 347 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
|..|.+++|.++.. .++.++.+|+.||+++|-+.+- --.-++.+..|+.|+|.+|.+-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777777776642 2466777777777777766541 1122445667777777777654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-07 Score=83.77 Aligned_cols=184 Identities=21% Similarity=0.137 Sum_probs=105.5
Q ss_pred hhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccch
Q 037538 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPI 338 (461)
Q Consensus 261 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~ 338 (461)
.+.++|.|+.|+++.|.+...+...-....+|++|.|.+..+.-. ..-..+..+|.+++|+++.|++.- .-..
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~-----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~ 166 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT-----QSTSSLDDLPKVTELHMSDNSLRQLNLDDN 166 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh-----hhhhhhhcchhhhhhhhccchhhhhccccc
Confidence 345667777777777766544322113445677777766554321 223445666777777777774320 0011
Q ss_pred HHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCcCccc-cchhhhcCCCCCeeccccccCcc-cCChhhh
Q 037538 339 SIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELNANKFSG-FMPSSLG 414 (461)
Q Consensus 339 ~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~ 414 (461)
......+.++.+.+..|...- ....--.-+|++..+-+..|.+... --+....++.+..|+|+.|++.. ...+++.
T Consensus 167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln 246 (418)
T KOG2982|consen 167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN 246 (418)
T ss_pred cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc
Confidence 112222345555555554321 0001112357888888888877532 12334556777788888888862 2235677
Q ss_pred cCccCCeeecccccccccCC----c--cCCCCCCCCEEEcc
Q 037538 415 NLTVLSRLLMEENRFEGSIP----P--SLGNCKKLQVLNLS 449 (461)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p----~--~l~~l~~L~~L~ls 449 (461)
.+++|..|.++++++.+.+. . -+++++++++|+=+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 78888889898888765432 2 24778888888754
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-08 Score=87.46 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=128.0
Q ss_pred CCCCEEEccccccccc-CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc-CccccchHHHhc
Q 037538 266 SNLQVLDFAENGLTGT-IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG-FGGEMPISIANL 343 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~ 343 (461)
+.++++|++...++.. .-..+..+.+|+.|.+.++++.+ .+...+++..+|+.|+++.++ |+......+..-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 4689999998877633 22245788999999999999988 777888899999999999864 553333333333
Q ss_pred cccccEEEccCCcCcccCchh-hhc-CCCCCeeecccCcC---ccccchhhhcCCCCCeecccccc-CcccCChhhhcCc
Q 037538 344 STHLRILTMGYNLMHGNIPVG-IEN-LVNLSLLGLEGNNL---SGSVPEVIGRLNKLEGLELNANK-FSGFMPSSLGNLT 417 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~-~~~-l~~L~~L~Ls~n~l---~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 417 (461)
.+.|..|++++|.+....... ..+ -++|+.|+++++.- ..-+.-...++++|..|||++|. ++......|-+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 348999999999876433221 221 36899999998632 22233334579999999999975 4443445677889
Q ss_pred cCCeeecccccccccCCccC---CCCCCCCEEEccCCC
Q 037538 418 VLSRLLMEENRFEGSIPPSL---GNCKKLQVLNLSSNN 452 (461)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~ls~N~ 452 (461)
.|+.|.++.|-. .+|..+ ...++|.+||+-|+-
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 999999988854 467654 567889999988763
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-07 Score=73.57 Aligned_cols=133 Identities=22% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCEEEccCCcCccccchHHHhcc--ccccEEEccCCcCcccCchhhh-cCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIE-NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+..++|+.+.+. .++.....+. .+|+..++++|.+.. .|..|. .++..+.++|++|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4667778877664 4444443332 267788999999984 555554 4568999999999998 78888999999999
Q ss_pred eccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|+++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+---+..-..++.++++.|.-|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 999999998 67888888999999999999887 555544333333445567777766544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=76.42 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
+..+.+++.|++++|.+...+ . --++|++|.++++.--..+|..+ +++|++|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~------LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----V------LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----C------CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc---
Confidence 445688999999998776532 1 12469999998854434566544 3489999999884322454
Q ss_pred hcCCCCCeeecccCcCc--cccchhhhcCCCCCeecccccc-Ccc-cCChhhhcCccCCeeecccccccccCCccCCCCC
Q 037538 366 ENLVNLSLLGLEGNNLS--GSVPEVIGRLNKLEGLELNANK-FSG-FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~--~~~~~~l~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
++|+.|+++.+... +.+|. +|+.|.+.+++ ... .+|.. -.++|+.|++++|... ..|..+. .
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred ---cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--c
Confidence 35777777765543 23333 34555554322 110 01111 1146777777777655 3444443 4
Q ss_pred CCCEEEccCC
Q 037538 442 KLQVLNLSSN 451 (461)
Q Consensus 442 ~L~~L~ls~N 451 (461)
+|+.|+++.|
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777777665
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-06 Score=54.09 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=15.9
Q ss_pred cCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23334444555555555555444
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.1e-05 Score=50.31 Aligned_cols=36 Identities=36% Similarity=0.608 Sum_probs=16.9
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCC
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 139 (461)
+|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 34444555555555555555444
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=69.88 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=53.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCC
Q 037538 122 IGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQ 201 (461)
Q Consensus 122 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (461)
+..+.+++.|++++|.++ .+|. + -.+|+.|.+++|.-...+|+.+. ++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 556789999999999887 6662 2 24699999988755456676553 5899999998832224553 466
Q ss_pred EEECccCCC
Q 037538 202 VLLLARNNL 210 (461)
Q Consensus 202 ~L~l~~n~~ 210 (461)
.|++..+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777765543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.5e-06 Score=81.34 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCEEecCCCCCccc--CchhccCCCCCCEEeCCCCCC-CCCCCcCC-CCCCCCCEEEccCC-cCCCcCchh-hcCCCC
Q 037538 102 TNLTGINLFQNRFHGQ--IPEEIGRLQKLQDLNLTYNYL-SGKIPTNL-SHCTELRSFEASAN-DFIGQIPDQ-LISLTK 175 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~ 175 (461)
..|+.|.++++.-.+. +-..-..++++++|.+.+|.. ++..-..+ ..+++|+++++..| .++...-+. ..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3566667766643221 222234566677776666642 11111111 24566666666553 222222221 223555
Q ss_pred CcEEEccCC
Q 037538 176 LEIIRLGTS 184 (461)
Q Consensus 176 L~~L~l~~n 184 (461)
|++++++.+
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 555555544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=62.47 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccC-CccCCCCCCCCEEEC
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNI-PAWVGNFSSLQVLLL 205 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 205 (461)
....+||++|.+. .+ ..|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|++.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3344555555443 11 22444455555555555555443333333455555555555544210 122444556666666
Q ss_pred ccCCCc
Q 037538 206 ARNNLH 211 (461)
Q Consensus 206 ~~n~~~ 211 (461)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.9e-05 Score=79.71 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=25.9
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc-cCChhhhcCccCCeeecccc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG-FMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n 427 (461)
++|+|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 344555555555444422 334444555555444443331 11223344455555555443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=6.5e-05 Score=78.12 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCCcEEEccCCCCc-ccCCccCC-CCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 174 TKLEIIRLGTSNLT-GNIPAWVG-NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 174 ~~L~~L~l~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
.+|++|++++...- ..-|..++ -+|+|+.|.+.+-.+...- +..++..+|+|..||+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-------------------F~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-------------------FSQLCASFPNLRSLDISG 182 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-------------------HHHHhhccCccceeecCC
Confidence 56788888774422 11122232 3577777777765553211 122233455555555555
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
.+++.. ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|.........-...+.+.-..+|+|+.||.|+.
T Consensus 183 TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 183 TNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 544422 345555555555555444332 11123445556666666554443321000011112223556666666655
Q ss_pred cCccccchH
Q 037538 331 GFGGEMPIS 339 (461)
Q Consensus 331 ~~~~~~~~~ 339 (461)
.+.+.+-+.
T Consensus 261 di~~~~le~ 269 (699)
T KOG3665|consen 261 DINEEILEE 269 (699)
T ss_pred chhHHHHHH
Confidence 555444333
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00043 Score=59.00 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=22.9
Q ss_pred hcCCCCCCEEEcccccccccCC---ccCCCCCCCCEEEcccCc
Q 037538 262 LSNASNLQVLDFAENGLTGTIP---ENFGSLKDLVRLNFDQNE 301 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 301 (461)
+..++.|++|.+-+|..+..-- ..+..+|+|+.|++++-.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 4455666666666666543211 234566777777776543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00029 Score=62.49 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCCCCCEEEccCC--cCCCcCchhhcCCCCCcEEEccCCCCcccCCcc---CCCCCCCCEEECccCCCc
Q 037538 148 HCTELRSFEASAN--DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW---VGNFSSLQVLLLARNNLH 211 (461)
Q Consensus 148 ~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~~ 211 (461)
.+++|+.|.++.| +.++.++-....+++|+++++++|++.. +.. +..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 3444444444444 3333333333333455555555554431 111 223344455555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=6.6e-05 Score=70.65 Aligned_cols=274 Identities=16% Similarity=0.158 Sum_probs=158.3
Q ss_pred CCCcEEEccCCCCcc--cCCccCCCCCCCCEEECccCCCc-ccCChhh-hcCCCCcEEecCCC-Cc-----hhhccCCCC
Q 037538 174 TKLEIIRLGTSNLTG--NIPAWVGNFSSLQVLLLARNNLH-GSIPNEL-GQLSALGFFTLYEN-FI-----SDVGLTLPN 243 (461)
Q Consensus 174 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l-~~l~~L~~L~l~~n-~l-----~~~~~~l~~ 243 (461)
..|+.|.+.++.-.+ .+-....+++++++|.+.++... ......+ ..+++|+++++..+ .+ ..+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778887765332 12233456788888888877632 2222222 34567777777663 22 234456777
Q ss_pred CcEEEccCcc-Cccc-cChhhcCCCCCCEEEccccccccc--CCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcC
Q 037538 244 LKIFAGGVNY-FTGS-IPVSLSNASNLQVLDFAENGLTGT--IPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 244 L~~L~l~~n~-~~~~-~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~ 318 (461)
|++++++.+. +++. +-.....++.++.+.+.+|.=.+. +-..-..+..+.++++..+ .+++. .....-..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~~~i~~~ 292 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DLWLIACG 292 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HHHHHhhh
Confidence 7777777663 3331 112233445555555554311000 0011133445566665554 23332 23334456
Q ss_pred CCCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCch-hh-hcCCCCCeeecccCcCc--cccchhhhcCC
Q 037538 319 CTSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPV-GI-ENLVNLSLLGLEGNNLS--GSVPEVIGRLN 393 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~-~~l~~L~~L~Ls~n~l~--~~~~~~l~~~~ 393 (461)
+..|+.++.+++... ...-..+.....+|+.+.+..|+--+.... .+ .+++.|+.+++.++... +++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 778888888876543 233334555556899999998873222211 11 35678899999887653 22333335789
Q ss_pred CCCeeccccccCc-ccC----ChhhhcCccCCeeecccccc-cccCCccCCCCCCCCEEEccCCC
Q 037538 394 KLEGLELNANKFS-GFM----PSSLGNLTVLSRLLMEENRF-EGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 394 ~L~~L~L~~n~l~-~~~----~~~~~~l~~L~~L~l~~n~l-~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.|+.+.+++|... +.. ...-..+..|+.+.+++++. +...-+.+..++.|+.+++-+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 9999999998753 221 11223457889999999874 44555677888899999888876
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=6.3e-05 Score=67.07 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=60.5
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeec
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLM 424 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 424 (461)
+.+.|++.+|.+.++ .....++.|++|.||-|.++.. ..+..|++|+.|+|..|.|...- -+-+.++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456667777766532 2345677777777777777633 23567777777777777775221 124566777777777
Q ss_pred ccccccccCCcc-----CCCCCCCCEEE
Q 037538 425 EENRFEGSIPPS-----LGNCKKLQVLN 447 (461)
Q Consensus 425 ~~n~l~~~~p~~-----l~~l~~L~~L~ 447 (461)
..|+..|..+.. +.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777776655432 23355555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00041 Score=61.59 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCC--CCCCCCCcCCCCCCCCCEEEccCCcCCC-cCchhhcCCCC
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYN--YLSGKIPTNLSHCTELRSFEASANDFIG-QIPDQLISLTK 175 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~ 175 (461)
..+..|+.+++.+..++ . -..+-.+++|++|.++.| ++.+.++.....+++|+++++++|++.. .--..+..+.+
T Consensus 40 d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455555555554443 1 122445667777777777 5555555555566777777777777642 01112455666
Q ss_pred CcEEEccCCCCcccCC---ccCCCCCCCCEEECcc
Q 037538 176 LEIIRLGTSNLTGNIP---AWVGNFSSLQVLLLAR 207 (461)
Q Consensus 176 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~ 207 (461)
|..|++.+|..+.... ..+.-+++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7778887776653111 1133356666665443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0053 Score=49.73 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=47.4
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCC
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 176 (461)
++.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566666666654 344333445666666777776654 4423334556666677776654 3322223345556777
Q ss_pred cEEEccCCCCcccCCccCCCCCCCCEEECcc
Q 037538 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207 (461)
Q Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (461)
+.+++..+ +...-...+.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77776553 332233445555 666666654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00058 Score=69.11 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=12.6
Q ss_pred hhhcCCCCCeeccccccCc
Q 037538 388 VIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 388 ~l~~~~~L~~L~L~~n~l~ 406 (461)
....++.++.+.+..+..+
T Consensus 357 ~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHhcCCCcchhhhhhhhcc
Confidence 3456777777777777643
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0027 Score=51.47 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=14.6
Q ss_pred cCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 285 NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 285 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
.|..+++|+.+.+.. .+... -...+.++++++.+++.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I------~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI------GENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-------TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEe------Chhhcccccccccccccc
Confidence 455556666666653 23321 122344555555555544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0017 Score=65.66 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=18.7
Q ss_pred hhhcCCCCCeeecccCcCcccc-chhhhcCCCC
Q 037538 364 GIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKL 395 (461)
Q Consensus 364 ~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L 395 (461)
.+..++.++.+.+..+...... ...+.+++.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4567788888888887743222 2334445544
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=6.3e-05 Score=74.82 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=44.3
Q ss_pred CcEEEccCccCccccC----hhhcCCCCCCEEEcccccccccCCc----cCCCC-CCCCEEEcccCcCcccCCCCchhhh
Q 037538 244 LKIFAGGVNYFTGSIP----VSLSNASNLQVLDFAENGLTGTIPE----NFGSL-KDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
+..+.+.+|.+..... ..+.....|+.|++++|.+.+.... .+... +.++.|++..|.++..... .+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHH
Confidence 4555566665543322 2334456666666666666533111 12222 3455555655555543332 4445
Q ss_pred hhcCCCCCCEEEccCCcC
Q 037538 315 FLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~ 332 (461)
.+.....++.++++.|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 555556666666666655
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0021 Score=57.70 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc--hhhhcCCCCCee
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP--EVIGRLNKLEGL 398 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~~~~L~~L 398 (461)
+.+.|++.++.+++ + .+..-.+.|++|.|+-|+++..- .+..|++|+.|+|..|.+.. +. ..+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 44555555555542 1 12222236666666666666433 35667777777777777763 22 235577777777
Q ss_pred ccccccCcccCCh-----hhhcCccCCeee
Q 037538 399 ELNANKFSGFMPS-----SLGNLTVLSRLL 423 (461)
Q Consensus 399 ~L~~n~l~~~~~~-----~~~~l~~L~~L~ 423 (461)
.|..|.-.|..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777776655543 244456666654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0068 Score=32.15 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=8.5
Q ss_pred CCeeecccccccccCCccC
Q 037538 419 LSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l 437 (461)
|+.|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555554 444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.00031 Score=69.93 Aligned_cols=182 Identities=24% Similarity=0.237 Sum_probs=103.1
Q ss_pred CcEEecCCCCchhh--------ccCCCCCcEEEccCccCccccCh----hhcCC-CCCCEEEccccccccc----CCccC
Q 037538 224 LGFFTLYENFISDV--------GLTLPNLKIFAGGVNYFTGSIPV----SLSNA-SNLQVLDFAENGLTGT----IPENF 286 (461)
Q Consensus 224 L~~L~l~~n~l~~~--------~~~l~~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~----~~~~~ 286 (461)
+..+.+.+|.+..- ....+.|+.++++.|.+.+.--. .+... ..++.|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776332 24567788888888887743222 22222 4567777877777644 34455
Q ss_pred CCCCCCCEEEcccCcCcccCCCCchhhhhhc----CCCCCCEEEccCCcCccccch----HHHhccccccEEEccCCcCc
Q 037538 287 GSLKDLVRLNFDQNELGSREIGDLNFLKFLA----NCTSLEVLGLAQNGFGGEMPI----SIANLSTHLRILTMGYNLMH 358 (461)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~----~~~~L~~L~L~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~ 358 (461)
.....++.++++.|.+.... ....+..+. ...++++|++.++.++..... .+......+.++++..|++.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g--~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELG--LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhh--hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 66778888888888775321 113333343 366777888887776632211 12222222555666666655
Q ss_pred cc----CchhhhcC-CCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcc
Q 037538 359 GN----IPVGIENL-VNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 359 ~~----~p~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+. ....+..+ ..+++++++.|.++.. +...+..++.++.+.+++|.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 11223333 4556666776666543 23334455666666666666653
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.012 Score=31.18 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=5.2
Q ss_pred CCeeecccCcCc
Q 037538 371 LSLLGLEGNNLS 382 (461)
Q Consensus 371 L~~L~Ls~n~l~ 382 (461)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.00071 Score=58.97 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 77 NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 77 ~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
..+|+.||++.+.+. .....+..++.+.+|+++.|.+. -.|..+.+...++.+++..|+.+ ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 368999999988876 33445667788888999988886 68888888888888888888877 7888888889999888
Q ss_pred ccCCcCCC
Q 037538 157 ASANDFIG 164 (461)
Q Consensus 157 l~~n~~~~ 164 (461)
+-.+.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 88887653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.038 Score=27.13 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=6.0
Q ss_pred CCCEEEccCCCCc
Q 037538 442 KLQVLNLSSNNLN 454 (461)
Q Consensus 442 ~L~~L~ls~N~l~ 454 (461)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.0044 Score=54.20 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=41.2
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCE
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 445 (461)
......+.||++.|++. .....+.-+..+..|+++.|.+. ..|+.+.+...++.+++..|..+ ..|.++...++++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33444555555555443 22223334444555555555544 44555555555555555555444 44555555555555
Q ss_pred EEccCCCC
Q 037538 446 LNLSSNNL 453 (461)
Q Consensus 446 L~ls~N~l 453 (461)
++.-+|+|
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 55555544
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.22 Score=27.40 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=9.0
Q ss_pred CCCCEEEccCCCCcccCC
Q 037538 441 KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|.+. +||
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.22 Score=27.40 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=9.0
Q ss_pred CCCCEEEccCCCCcccCC
Q 037538 441 KKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|.+. +||
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.95 E-value=0.25 Score=42.66 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=14.1
Q ss_pred CCCCeeecccC-cCccccchhhhcCCCCCeecccc
Q 037538 369 VNLSLLGLEGN-NLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 369 ~~L~~L~Ls~n-~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
++|+.|++++| +++..--.++..+++|+.|.+++
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34444444443 23333333344444444444443
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.36 Score=25.93 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=6.1
Q ss_pred CCCCEEEccCCcCcc
Q 037538 320 TSLEVLGLAQNGFGG 334 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~ 334 (461)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.21 Score=43.05 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
.++.++-++..+....-..+.++++++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45666666666665555555566666666666554
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=82.87 E-value=5.6 Score=39.09 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCC---CCCCCEEECccCCCcccCChhhh
Q 037538 150 TELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGN---FSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 150 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
+.+++++++.|.+....|-.+..-.. -+.++.|..+..+...+.. -..+.+++++.|.....+|..+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHH
Confidence 45677777777766555544432111 0445555544332221111 12567777777777666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 461 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-29 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-29 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-11 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 4e-06 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 8e-06 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 8e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-05 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 6e-05 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 9e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 9e-05 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
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| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
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| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
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| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
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Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 1e-85
Identities = 102/389 (26%), Positives = 162/389 (41%), Gaps = 40/389 (10%)
Query: 81 TVLKLESKQLVGSIPASI---GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY 137
VL L + + G+ L + + N+ G + + R L+ L+++ N
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211
Query: 138 LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNF 197
S IP L C+ L+ + S N G + + T+L+++ + ++ G IP
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGS 257
SLQ L LA N G IP+ L L N+F G+
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGA-------------------CDTLTGLDLSGNHFYGA 309
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIP-ENFGSLKDLVRLNFDQNELG---SREIGDLNFL 313
+P + S L+ L + N +G +P + ++ L L+ NE + +L
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--- 366
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLS-THLRILTMGYNLMHGNIPVGIENLVNLS 372
SL L L+ N F G + ++ L+ L + N G IP + N L
Sbjct: 367 -----SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 373 LLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432
L L N LSG++P +G L+KL L+L N G +P L + L L+++ N G
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 433 IPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
IP L NC L ++LS+N L G IPK +
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 1e-85
Identities = 117/443 (26%), Positives = 186/443 (41%), Gaps = 49/443 (11%)
Query: 31 SATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQL 90
S ++ + L+ FK+ L L + W+ + + C + GVTC + +VT + L SK L
Sbjct: 7 SQSLYREIHQLISFKDVLPDKNL--LPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPL 62
Query: 91 VGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCT 150
+ + L L+ L L+ ++++G +
Sbjct: 63 NVGF---------------------SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSA 100
Query: 151 ELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTGNIPA-WVGNFSSLQVLLLAR 207
L S + S N G + L S + L+ + + ++ L +SL+VL L+
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 208 NNLHGSIPNEL---GQLSALGFFTLYENFIS---DVGLTLPNLKIFAGGVNYFTGSIPVS 261
N++ G+ L + N IS DV NL+ N F+ IP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR-CVNLEFLDVSSNNFSTGIP-F 218
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321
L + S LQ LD + N L+G + +L LN N+ G + S
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV----GPIP----PLPLKS 270
Query: 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNL 381
L+ L LA+N F GE+P ++ L L + N +G +P + L L L NN
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 382 SGSVP-EVIGRLNKLEGLELNANKFSGFMPSSLGNLTV-LSRLLMEENRFEGSIPPSLGN 439
SG +P + + ++ L+ L+L+ N+FSG +P SL NL+ L L + N F G I P+L
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 440 CKK--LQVLNLSSNNLNGTIPKE 460
K LQ L L +N G IP
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPT 413
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 9e-80
Identities = 108/382 (28%), Positives = 169/382 (44%), Gaps = 35/382 (9%)
Query: 81 TVLKLESKQLVGSIPASIGN--LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
L L S G I ++ L + L N F G+IP + +L L+L++NYL
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
SG IP++L ++LR + N G+IP +L+ + LE + L ++LTG IP+ + N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258
+L + L+ N L G IP +G+L L L N F+G+I
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--------------------FSGNI 530
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
P L + +L LD N GTIP + NF ++ N
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG----------KRYVYIKN 580
Query: 319 CTSLEVLGLAQNG--FGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGL 376
+ A N F G + LST + + G+ +N ++ L +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLST-RNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 377 EGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436
N LSG +P+ IG + L L L N SG +P +G+L L+ L + N+ +G IP +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 437 LGNCKKLQVLNLSSNNLNGTIP 458
+ L ++LS+NNL+G IP
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 1e-78
Identities = 107/389 (27%), Positives = 163/389 (41%), Gaps = 40/389 (10%)
Query: 81 TVLKLESKQLVGSIPASI-GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L L + G IP + G LTG++L N F+G +P G L+ L L+ N S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 140 GKIPTN-LSHCTELRSFEASANDFIGQIPDQLISLT-KLEIIRLGTSNLTGNIPAWVGNF 197
G++P + L L+ + S N+F G++P+ L +L+ L + L ++N +G I +
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 198 --SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT 255
++LQ L L N G IP L S L L N Y +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--------------------YLS 431
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL-GSREIGDLNFLK 314
G+IP SL + S L+ L N L G IP+ +K L L D N+L G
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-------IPS 484
Query: 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLL 374
L+NCT+L + L+ N GE+P I L +L IL + N GNIP + + +L L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 375 GLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN--RFEGS 432
L N +G++P + + + + AN +G + N + N F+G
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 433 IPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L N++S G
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 9e-62
Identities = 93/312 (29%), Positives = 143/312 (45%), Gaps = 15/312 (4%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L L L G+IP+S+G+L+ L + L+ N G+IP+E+ ++ L+ L L +N L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
+IP+ LS+CT L S N G+IP + L L I++L ++ +GNIPA +G+ SL
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIF--AGGVNYFTGSI 258
L L N +G+IP + + S K AG + F G
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL-GS--REIGDLNFLKF 315
L+ S + G F + ++ L+ N L G +EIG
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG------- 653
Query: 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLG 375
+ L +L L N G +P + +L L IL + N + G IP + L L+ +
Sbjct: 654 --SMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 376 LEGNNLSGSVPE 387
L NNLSG +PE
Sbjct: 711 LSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-32
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 12/212 (5%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
+LKL + G+IPA +G+ +L ++L N F+G IP + + + N+++G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572
Query: 141 KIPTNLSHCTELRSFEASAND--FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
K + + + + N F G +QL L+ + + G+ N
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-----DVGLTLPNLKIFAGGVNY 253
S+ L ++ N L G IP E+G + L L N IS +VG L L I N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNK 691
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285
G IP ++S + L +D + N L+G IPE
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 35/144 (24%), Positives = 56/144 (38%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
+ + + G + L+ N+ + G + L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192
++YN LSG IP + L ND G IPD++ L L I+ L ++ L G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 193 WVGNFSSLQVLLLARNNLHGSIPN 216
+ + L + L+ NNL G IP
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-18
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 345 THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK 404
T + + + N+ + + +L L L L ++++GSV L L+L+ N
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNS 111
Query: 405 FSGFMPS--SLGNLTVLSRLLMEENRFEGSIP-PSLGNCKKLQVLNLSSNNLNGTIPKEV 461
SG + + SLG+ + L L + N + L+VL+LS+N+++G
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 8e-73
Identities = 94/360 (26%), Positives = 131/360 (36%), Gaps = 64/360 (17%)
Query: 35 EADKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSP--SNGRVTVLKLESKQL 90
DK ALL K L +SSW + CN W+GV C RV L L L
Sbjct: 5 PQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 91 VGS--IPASIGNLTNLTGINLF-QNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLS 147
IP+S+ NL L + + N G IP I +L +L L +T+ +SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 148 HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL-QVLLLA 206
L + + S N G +P + SL L I + ++G IP G+FS L + ++
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNAS 266
RN L G IP L+ L F L N G V +
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNM--------------------LEGDASVLFGSDK 221
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326
N Q + A+N L + + + +L L
Sbjct: 222 NTQKIHLAKNSLAFDLGK-------------------------------VGLSKNLNGLD 250
Query: 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386
L N G +P + L L L + +N + G IP G NL + N P
Sbjct: 251 LRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 1e-59
Identities = 78/327 (23%), Positives = 124/327 (37%), Gaps = 59/327 (18%)
Query: 141 KIPTNLSHCTELRS----FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG--NIPAWV 194
+I +L + T L S + ++G + D ++ + L NL IP+ +
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 195 GNFSSLQVLLLA-RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNY 253
N L L + NNL G IP + +L+ L + +
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT--------------------N 112
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL 313
+G+IP LS L LDF+ N L+GT+P +
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-------------------------- 146
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373
+ +L + N G +P S + S +T+ N + G IP NL NL+
Sbjct: 147 ----SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
+ L N L G + G + + L N + + +G L+ L + NR G++
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260
Query: 434 PPSLGNCKKLQVLNLSSNNLNGTIPKE 460
P L K L LN+S NNL G IP+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG 287
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 316 LANCTSLEVLGLAQNGFGGEMPI--SIANLSTHLRILTM-GYNLMHGNIPVGIENLVNLS 372
+ L L+ PI S+ANL +L L + G N + G IP I L L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 373 LLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432
L + N+SG++P+ + ++ L L+ + N SG +P S+ +L L + + NR G+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 433 IPPSLGNCKKL-QVLNLSSNNLNGTIPKEV 461
IP S G+ KL + +S N L G IP
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 7e-31
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 310 LNFLKFLANCTSL----EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPV 363
L K L N T+L + G + + + + L + + IP
Sbjct: 12 LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70
Query: 364 GIENLVNLSLLGLEG-NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422
+ NL L+ L + G NNL G +P I +L +L L + SG +P L + L L
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 423 LMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
N G++PPS+ + L + N ++G IP
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 2e-61
Identities = 65/445 (14%), Positives = 142/445 (31%), Gaps = 22/445 (4%)
Query: 31 SATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQL 90
+ T +A L +D + D+++ NW G E
Sbjct: 11 ALTDDAIVPIKLSRTAEYIKD-YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMW 69
Query: 91 VGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG----KIPTNL 146
S+ + +TG++L G++P+ IG+L +L+ L L + P +
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 147 SHCTELRSFEASANDFIGQIPDQLI--SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLL 204
S + + D + L + + +I +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189
Query: 205 LARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSN 264
NN+ + + +L+ L F + + + + + + N
Sbjct: 190 QLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI-CEAWENENSEYAQQYKTEDLKWDN 247
Query: 265 ASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL--GSREIGDLNFLKFLANCTSL 322
+L ++ +P +L ++ +N N G + D L +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307
Query: 323 EVLGLAQNGF-GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNL 381
+++ + N + S+ + L +L YN + G +P + + L+ L L N +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365
Query: 382 SGSVPEVIGRLNKLEGLELNANKFSGFMPS-SLGNLTVLSRLLMEENRFEG-------SI 433
+ G ++E L NK +++V+S + N +
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 434 PPSLGNCKKLQVLNLSSNNLNGTIP 458
P+ + +NLS+N ++
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPK 450
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 2e-52
Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 35/400 (8%)
Query: 83 LKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL---- 138
E Q + NL +LT + ++ ++P + L ++Q +N+ N
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 139 ----SGKIPTNLSHCTELRSFEASANDFI-GQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
+ + +++ N+ + L + KL ++ + L G +PA
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA- 348
Query: 194 VGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-----GLTLPNLKIFA 248
G+ L L LA N + N G + + N + + ++ +
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408
Query: 249 GGVNYFTG-------SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE 301
N + + N+ ++ + N ++ E F + L +N N
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468
Query: 302 LGSREIGDLNFL-KFLANCTSLEVLGLAQNGFGGEMPISIANLS-THLRILTMGYNLMHG 359
L L + N L + L N + + +L + + YN
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527
Query: 360 NIPVGIENLVNLSLLGLE------GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSL 413
P N L G+ GN PE I L L++ +N
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586
Query: 414 GNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
N++VL +++N + + + L +
Sbjct: 587 PNISVLD---IKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 9/216 (4%)
Query: 247 FAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSRE 306
F ++ + VSL++ + L G +G +P+ G L +L L + E
Sbjct: 62 FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121
Query: 307 IGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS-THLRILTMGYNLMHGNIPVGI 365
L K ++ S E + + + L + + +I
Sbjct: 122 R--LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
+ + +G NN++ V + + RL KL + + F E
Sbjct: 180 RITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----E 233
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ + N K L + + + +P +
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 87 SKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI--GRLQKLQDLNLTYNYLSGKIPT 144
K + + N LT I+L N+ + ++ L L ++L+YN S PT
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530
Query: 145 NLSHCTELRSFE------ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
+ + L+ F A N + + P+ + L +++G++++ + +
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TP 587
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237
++ VL + N + + G + L+ + D+
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-50
Identities = 83/406 (20%), Positives = 142/406 (34%), Gaps = 31/406 (7%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
+TVL L QL A+ + LT +++ N PE +L L+ LNL +N LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
+ CT L +N + + L + L + L+ +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 200 LQVLLLARNNLHGSIPNELG--QLSALGFFTLYENFISDVGLT----LPNLKIFAGGVNY 253
LQ LLL+ N + EL S+L L N I + + L
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 254 FTGSIPVSLS---NASNLQVLDFAENGLTGTIPENFGSLKD--LVRLNFDQNELGSREIG 308
S+ L ++++ L + + L+ T F LK L L+ N L +G
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVG 264
Query: 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI------- 361
+ A LE L N S+ L ++R L + + +I
Sbjct: 265 N----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPK 319
Query: 362 --PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLG----N 415
+ L L L +E N++ G + L L+ L L+ + S ++
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ L L + +N+ + L+VL+L N + + +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 3e-46
Identities = 81/413 (19%), Positives = 138/413 (33%), Gaps = 40/413 (9%)
Query: 79 RVTVLKLESKQLVGSIPASIG---NLTNLTGINLFQNRFHGQIPEEIGRLQ--KLQDLNL 133
R+ L L + QL S+ + T++ ++L ++ L+ L L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 134 TYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS--------- 184
+YN L+ + + +L F N+ L L + + L S
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD-------- 236
+L L+ L + N++ G N L L + +L +F S
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 237 VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRL 295
V L L I N + + S +L+VLD N + + + L+++ +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPISIANLSTHLRILTMG 353
N+ A SL+ L L + P L +L IL +
Sbjct: 436 YLSYNKYLQLTRNSF------ALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILDLS 488
Query: 354 YNLMHGNIPVGIENLVNLSLLGLEGNNLS--------GSVPEVIGRLNKLEGLELNANKF 405
N + +E L L +L L+ NNL+ G + L+ L L L +N F
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 406 SGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+L L + + N N L+ LNL N +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-41
Identities = 72/402 (17%), Positives = 119/402 (29%), Gaps = 50/402 (12%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T+L L L S L L L N + L ++ LNL ++
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 141 KIPTN---------LSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP 191
I L ND G + L L+ + L ++ T
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRT 369
Query: 192 AWVGNF-----SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKI 246
F S L +L L +N + + L L L N I
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG----------- 418
Query: 247 FAGGVNYFTGSIPVS-LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
+ N+ + + N +F + L RL + L +
Sbjct: 419 ---------QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN--------LM 357
+ + +L +L L+ N + L L IL + +N
Sbjct: 470 D----SSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHAN 524
Query: 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
G ++ L +L +L LE N EV L +L+ ++L N + S N
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Query: 418 VLSRLLMEENRFEGSIPPSLG-NCKKLQVLNLSSNNLNGTIP 458
L L +++N G + L L++ N + T
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 64/376 (17%), Positives = 113/376 (30%), Gaps = 55/376 (14%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T + L S L L +N+ N G L L+ L+L+ ++ S
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 141 KIPTNLS----HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-G 195
+ TN + + L + N D L LE++ LG + + +
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT 255
++ + L+ N N + +L L + +V
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD----------------- 470
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS--REIGDLNFL 313
S P NL +LD + N + + L+ L L+ N L + +
Sbjct: 471 -SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNL-- 371
FL + L +L L NGF +L L+I+ +G N ++ N V+L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDL-FELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 372 -----------------------SLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG- 407
+ L + N + + +N + N + S
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648
Query: 408 ---FMPSSLGNLTVLS 420
P V
Sbjct: 649 YLCNTPPHYHGFPVRL 664
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 11/206 (5%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
+P L +N+ VL+ N L NF L L+ N + E
Sbjct: 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE------LC 69
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGL 376
L+VL L N + A T+L L + N + NL L L
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 377 EGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLG--NLTVLSRLLMEENRFEGSIP 434
N LS + +L L+ L L+ NK L + L +L + N+ + P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 435 PSLGNCKKLQVLNLSSNNLNGTIPKE 460
+L L L++ L ++ ++
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEK 214
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-21
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 12/194 (6%)
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326
+ +V D + LT +P++ ++ LN N+L R + NF + L L
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQL--RRLPAANF----TRYSQLTSLD 55
Query: 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386
+ N P L L++L + +N + NL+ L L N++
Sbjct: 56 VGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 387 EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK--KLQ 444
+ L L+L+ N S + L L LL+ N+ + L L+
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174
Query: 445 VLNLSSNNLNGTIP 458
L LSSN + P
Sbjct: 175 KLELSSNQIKEFSP 188
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 1/113 (0%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+ +L LES +L L I+L N + L+ LNL N +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Query: 139 SGKIPTNLSHC-TELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNI 190
+ L + N F + + L+ +
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 2e-47
Identities = 61/410 (14%), Positives = 122/410 (29%), Gaps = 32/410 (7%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L L L S + L ++L + L L L LT N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFS 198
S + L+ A + + L L+ + + + + +P + N +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFT----LYENFISDV---GLTLPNLKIFAGGV 251
+L+ L L+ N + +L L + L N ++ + L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 252 NYFTGSIP-VSLSNASNLQVLDFAENGLTGTI---PENFGSLKDLVRLNFDQNELGSREI 307
N+ + ++ + + L+V + +L+ L L ++ L +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMG-------------- 353
+ + T++ L S HL ++
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329
Query: 354 --YNLMHGNIPVGIENLVNLSLLGLEGNNLS--GSVPEVIGRLNKLEGLELNANKFSGFM 409
+ G +L +L L L N LS G + L+ L+L+ N
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM- 388
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLNGTIP 458
S+ L L L + + + S + + L L++S +
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-42
Identities = 70/411 (17%), Positives = 124/411 (30%), Gaps = 54/411 (13%)
Query: 92 GSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ----DLNLTYNYLSGKIPTNLS 147
+P NLTNL ++L N+ ++ L ++ L+L+ N ++ P
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 148 HCTELRSFEASANDFIGQIPDQLI-SLTKLEIIRLGTSNLTG------------------ 188
L N + I L LE+ RL
Sbjct: 199 E-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 189 ---------------NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF 233
+I +++ L + L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315
Query: 234 ISDV-GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT--GTIPENFGSLK 290
L L +LK G S + +L+ LD + NGL+ G ++
Sbjct: 316 FGQFPTLKLKSLKRLT--FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 291 DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRIL 350
L L+ N + + LE L + S+ +L L
Sbjct: 374 SLKYLDLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKLEGLELNANKFSGFM 409
+ + L +L +L + GN+ + P++ L L L+L+ +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460
P++ +L+ L L M N F LQVL+ S N++ + +E
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-40
Identities = 65/403 (16%), Positives = 125/403 (31%), Gaps = 38/403 (9%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL-S 139
+ L L + + L++L + + IG L+ L++LN+ +N + S
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGN----IPAWVG 195
K+P S+ T L + S+N L L ++ ++ L + +L+ N I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAF 197
Query: 196 NFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYEN-FISDVGLTLPNLKIFAG---- 249
L L L N ++ + L+ L L F ++ L + G
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 250 --------GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE 301
++Y+ I + +N+ + ++F L +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCK 315
Query: 302 LGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH--G 359
G L + L S +L L L + N + G
Sbjct: 316 FGQ------FPTLKLKSLKRLTFTSNKGGN-----AFSEVDL-PSLEFLDLSRNGLSFKG 363
Query: 360 NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSS-LGNLTV 418
+L L L N + + L +LE L+ + S +L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 419 LSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L L + + L+VL ++ N+ ++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 71/355 (20%), Positives = 114/355 (32%), Gaps = 32/355 (9%)
Query: 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176
+IP+ + ++L+L++N L + EL+ + S + SL+ L
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD 236
+ L + + SSLQ L+ NL +G L L + N I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 237 VGL-----TLPNLKIFAGGVNYFTGSIPVSLSNASNLQV----LDFAENGLTGTIPENFG 287
L L NL+ N L + + LD + N + P F
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 288 SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST-- 345
++ L +L N + + LEV L F E + + S
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKT-----CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 346 HLRILTMGYN------LMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
L LT+ +I L N+S L + + LE
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLE 310
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
L KF F L +L L+ +G S + L+ L+LS N L+
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLS 360
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 4e-35
Identities = 71/373 (19%), Positives = 125/373 (33%), Gaps = 26/373 (6%)
Query: 89 QLVGSIPASIGNLTNLTGINL---FQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN 145
L +++ L NLT + + + I + L + +L + +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKD 299
Query: 146 LSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205
S+ + E F +L SL +L ++ G + SL+ L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDL 354
Query: 206 ARNNLH--GSIPNELGQLSALGFFTLYENFISDVG---LTLPNLKIFAGGVNYFTGSIPV 260
+RN L G ++L + L N + + L L L+ +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 261 S-LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
S + NL LD + F L L L N + D
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-----IFTEL 469
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
+L L L+Q P + +L + L++L M +N + L +L +L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 380 NLSGSVPEVIGRL-NKLEGLELNANKFSG--FMPSSLGNLTVLSRLLMEENRFEGSIPPS 436
++ S + + + L L L N F+ S L + +LL+E R E + P
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588
Query: 437 LGNCKKLQVLNLS 449
+ LN++
Sbjct: 589 KQG-MPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 7e-17
Identities = 22/117 (18%), Positives = 40/117 (34%)
Query: 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401
NL + L + +N + + L +L L + L+ L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
N + L+ L +L+ E +G+ K L+ LN++ N +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 28/174 (16%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLS 139
L + + L++L + + N F P+ L+ L L+L+ L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGN-FS 198
PT + + L+ S N+F L L+++ +++ + + + S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 199 SLQVLLLARNNLHGS--------------------------IPNELGQLSALGF 226
SL L L +N+ + P++ + L
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+T L L QL P + +L++L +N+ N F L LQ L+ + N++
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 139 SGKIPTNLSHC-TELRSFEASANDFIGQIPDQ--LISLTKLEIIRLGTSNLTGNIPAWVG 195
L H + L + NDF Q L + + + + P+
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590
Query: 196 NFS 198
Sbjct: 591 GMP 593
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 3e-46
Identities = 63/455 (13%), Positives = 136/455 (29%), Gaps = 51/455 (11%)
Query: 29 LESATIEADKLALLDFKNHL----------TQDPLQIMSSWNDSVHFCNWVGVTCSPSNG 78
E+A D AL L T + +WN + W
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV---- 317
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+ N +TG++L G++P+ IG+L +L+ L+ +
Sbjct: 318 ------------------DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359
Query: 139 SGKIP----TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV 194
+ L+ + D L ++++ + P
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 195 GNFSSLQVL-LLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNY 253
+ SL+ + N I + +L+ L + + + + +
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY-AK 478
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL 313
+ +S SN +L ++ +P+ L +L LN N S ++
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 314 KF---LANCTSLEVLGLAQNGFGGEMP-ISIANLSTHLRILTMGYNLMHGNIPVGIENLV 369
+ +++ + N S+ + L +L +N + ++ V
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM-VKLGLLDCVHNKVR-HLEA-FGTNV 595
Query: 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS-SLGNLTVLSRLLMEENR 428
L+ L L+ N + + +++EGL + NK + ++ V+ + N+
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 429 FEG-----SIPPSLGNCKKLQVLNLSSNNLNGTIP 458
S + LS N +
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 6e-45
Identities = 73/409 (17%), Positives = 132/409 (32%), Gaps = 63/409 (15%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
T + + + S NL +LT + L+ Q+P+ + L +LQ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 132 NLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NI 190
N+ N ++ D + K++I +G +NL
Sbjct: 521 NIACNRGISAAQLKADW---------------TRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Query: 191 PAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGG 250
A + L +L N + G L L N I
Sbjct: 566 SASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE--------------- 608
Query: 251 VNYFTGSIPVSL-SNASNLQVLDFAENGLTGTIPE--NFGSLKDLVRLNFDQNELGSREI 307
IP + ++ L F+ N L IP N S+ + ++F N++GS
Sbjct: 609 ------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Query: 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNL-------MHGN 360
+ + + L+ N A + + + + NL
Sbjct: 662 NISCSMDDY-KGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKP 719
Query: 361 IPVGIENLVNLSLLGLEGNNLSGSVPEVI--GRLNKLEGLELNANKFSGFMPSSLGNLTV 418
+N L+ + L N L+ S+ + L L ++++ N FS F P+ N +
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQ 777
Query: 419 LSRL------LMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L E NR P + C L L + SN++ + +++
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 87 SKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI--GRLQKLQDLNLTYNYLSGKIPT 144
+ + + N LT I+L N+ + ++ L L +++++YN S PT
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770
Query: 145 NLSHCTELRSF------EASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
+ ++L++F +A N + Q P + + L +++G++++ + +
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TP 827
Query: 199 SLQVLLLARNNL-HGSIPNELGQLSALGFFTLYENFISDV 237
L +L +A N + + + G + L + D+
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIE-AGMYVLLYDKTQDI 866
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 380 NLSGSVPEV-IGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLG 438
++ G P V + ++ GL L G +P ++G LT L L + S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 439 NCKKLQVLNLSSNNLNGTIPKE 460
+ + + K
Sbjct: 369 EELTPDMSEERKHRIRMHYKKM 390
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 6e-42
Identities = 72/394 (18%), Positives = 132/394 (33%), Gaps = 20/394 (5%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L+ L + L NLT ++L + + + + +L L LT N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
T LS L+ L + LE + LG+++++
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENF-----ISDVGLTLPNLKIFAGGVNYF 254
L+VL N +H ++ L +L N I + G
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 255 TGSIPVSLSNAS--NLQVLDFAENGLTGTIPENFGSLKD--LVRLNFDQNELGSREIGDL 310
I L N++ +L + F + P F L + + +N ++ +
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVN 370
+ + L+ L L E+P + LS L+ L + N + N +
Sbjct: 275 H------CFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPS 326
Query: 371 LSLLGLEGNNLSGSV-PEVIGRLNKLEGLELNANK--FSGFMPSSLGNLTVLSRLLMEEN 427
L+ L ++GN + + L L L+L+ + S L NL+ L L + N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 428 RFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ C +L++L+L+ L +
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-40
Identities = 73/413 (17%), Positives = 129/413 (31%), Gaps = 36/413 (8%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L L + L+ ++ L + Q + + L+ L L N++S
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS-NLTGNIPAWVGNFSS 199
+L+ + N + + SL + + L + N I + +
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203
Query: 200 LQVLLLARNNLHGSIPNELG--QLSALGFFTLYENFISDV------GLTLPNLKIFAGGV 251
Q L I L + +L T + D+ GL +++
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS---REIG 308
+YF + S LQ LD L+ +P L L +L N+ +
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322
Query: 309 DLNFLKFL----------------ANCTSLEVLGLAQN--GFGGEMPISIANLSTHLRIL 350
+ L L N +L L L+ + + + NL +HL+ L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSL 381
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLELNANKFSGFM 409
+ YN + L LL L L + L+ L+ L L+ +
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441
Query: 410 PSSLGNLTVLSRLLMEENRFEGSI---PPSLGNCKKLQVLNLSSNNLNGTIPK 459
L L L ++ N F SL +L++L LS +L+
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 79/413 (19%), Positives = 146/413 (35%), Gaps = 35/413 (8%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ--DLNLTYN 136
+ L L S + L ++ N H E++ LQ+ LNL N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 137 YLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLI--SLTKLEIIRLGTSNLTGNIPAWV 194
++G I +S + I L ++ L + + PA
Sbjct: 190 DIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 195 GNFS--SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLT---LPNLKIFAG 249
S++ + L ++ N S L L +S++ L LK
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308
Query: 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIG 308
N F +S SN +L L N + +L++L L+ +++ + +
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 309 DLNF-----LKFL---------------ANCTSLEVLGLAQNGFGGEMPISIANLSTHLR 348
+L L+ L C LE+L LA + S L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG---SVPEVIGRLNKLEGLELNANKF 405
+L + ++L+ + + L L L L+GN+ + L +LE L L+
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 406 SGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
S + +L +++ + + NR S +L + K + LNL+SN+++ +P
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 5e-35
Identities = 62/347 (17%), Positives = 107/347 (30%), Gaps = 31/347 (8%)
Query: 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176
+IP + + L ++N L T S L + + D S +L
Sbjct: 26 EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83
Query: 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD 236
+ + L + L + +L+ L + + L L L N IS
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143
Query: 237 VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLN 296
+ L+VLDF N + E+ SL+ L+
Sbjct: 144 I--------------------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183
Query: 297 FDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS-THLRILTMGYN 355
+ N I F + + L + + N + L + T
Sbjct: 184 LNLNGNDIAGIEPGAF-----DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 356 LMHGNIPVGIENLVNLSL--LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSL 413
P E L +S+ + L+ + + L+ L+L A S PS L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGL 297
Query: 414 GNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460
L+ L +L++ N+FE S N L L++ N +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 64/379 (16%), Positives = 123/379 (32%), Gaps = 22/379 (5%)
Query: 92 GSIPASIGNLTNLTGINLFQNRFHGQIPEEIG--RLQKLQDLNLTYNYLSGKIPTNLSHC 149
I + +N + I + + +Q L P
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 150 TE--LRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207
E + S + F + + L+ + L ++L+ +P+ + S+L+ L+L+
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310
Query: 208 NNLHGSIPNELGQLSALGFFTLYENFI-----SDVGLTLPNLKIFAGGVN--YFTGSIPV 260
N +L ++ N + L NL+ + + +
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
L N S+LQ L+ + N E F L L+ L + N
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-----KDAQSPFQNLH 425
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV---GIENLVNLSLLGLE 377
L+VL L+ + L L+ L + N ++ L L +L L
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
+LS L + ++L+ N+ + +L +L + L + N +P L
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
Query: 438 GNCKKLQVLNLSSNNLNGT 456
+ + +NL N L+ T
Sbjct: 544 PILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIG---RLQKLQDLNLTYNY 137
VL L L S L L +NL N F ++ L +L+ L L++
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 138 LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNF 197
LS + + + S N + L L + + L +++++ +P+ +
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 198 SSLQVLLLARNNLHGSIPNE 217
S + + L +N L + N
Sbjct: 547 SQQRTINLRQNPLDCTCSNI 566
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-35
Identities = 55/369 (14%), Positives = 112/369 (30%), Gaps = 60/369 (16%)
Query: 91 VGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCT 150
+GS + + + + + + + Q+ + + + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA------- 53
Query: 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS--LQVLLLARN 208
+ +I L + + + L L
Sbjct: 54 ---------------------NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSV 91
Query: 209 NLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNL 268
L P++ +LS L T+ + +P ++ + L
Sbjct: 92 PLP-QFPDQAFRLSHLQHMTIDAAGLM---------------------ELPDTMQQFAGL 129
Query: 269 QVLDFAENGLTGTIPENFGSLKDLVRLNF-DQNELGS--REIGDLNFLKFLANCTSLEVL 325
+ L A N L +P + SL L L+ EL + + +L+ L
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 326 GLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385
L G +P SIANL +L+ L + + + + I +L L L L G +
Sbjct: 189 RLEWTGI-RSLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY 245
Query: 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445
P + G L+ L L +P + LT L +L + +P + +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 446 LNLSSNNLN 454
+ + +
Sbjct: 306 ILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 5e-31
Identities = 57/352 (16%), Positives = 104/352 (29%), Gaps = 62/352 (17%)
Query: 116 GQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTK 175
G ++L + LS + + + + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNN 57
Query: 176 LEIIRLGTSNLTGNIPAWVGNFSS--LQVLLLARNNLHGSIPNELGQLSALGFFTLYENF 233
+I L + + + L L L P++ +LS L T+
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 234 ISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLV 293
+ +P ++ + L+ L A N L +P + SL L
Sbjct: 116 LM---------------------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153
Query: 294 RLNF-DQNELGS--REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRIL 350
L+ EL + + +L+ L L + +
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-----------GIRS----- 197
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410
+P I NL NL L + + LS ++ I L KLE L+L P
Sbjct: 198 ----------LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 411 SSLGNLTVLSRL-LMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
G L RL L + + ++P + +L+ L+L +P +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
L NL + L +P I LQ L+ L + + LS + + H +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
+ + P L+ + L + +P + + L+ L L
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Query: 213 SIPNELGQLSALGFFTLYENFISDVGLTLP 242
+P+ + QL A + + + + P
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 2/144 (1%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L+LE + S+PASI NL NL + + + + I L KL++L+L
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
P L+ + +P + LT+LE + L +P+ + +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 201 QVLLLARNNLHGSIPNELGQLSAL 224
++L+ + + A
Sbjct: 304 CIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 74/376 (19%), Positives = 141/376 (37%), Gaps = 56/376 (14%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L+ + + L ++T + + + + I L L+ LNL N ++
Sbjct: 24 GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT 79
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
P LS+ +L + N L +LT L + L N++ P + N +
Sbjct: 80 DISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTK 133
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGS 257
+ L L N+ S + L ++ L + T+ E+ + DV L +L + N
Sbjct: 134 MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
P L++ ++L N +T P ++ L L N++ L LA
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--------LSPLA 240
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
N + L L + N I++++ +++L L +L +
Sbjct: 241 NLSQLTWLEIGTNQ--------ISDIN-------------------AVKDLTKLKMLNVG 273
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
N +S V+ L++L L LN N+ +G LT L+ L + +N P L
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329
Query: 438 GNCKKLQVLNLSSNNL 453
+ K+ + ++ +
Sbjct: 330 ASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-33
Identities = 76/341 (22%), Positives = 128/341 (37%), Gaps = 30/341 (8%)
Query: 120 EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179
L + L ++ + + + + I + LT LE +
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VASIQG-IEYLTNLEYL 71
Query: 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG- 238
L + +T P + N L L + N + + + L L+ L L E+ ISD+
Sbjct: 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127
Query: 239 -LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNF 297
L + G N+ + LSN + L L E+ + +L DL L+
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSL 184
Query: 298 DQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357
+ N++ + LA+ TSL N +AN+ T L L +G N +
Sbjct: 185 NYNQIED--------ISPLASLTSLHYFTAYVNQI--TDITPVANM-TRLNSLKIGNNKI 233
Query: 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
P + NL L+ L + N +S + L KL+ L + +N+ S S L NL+
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLS 287
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
L+ L + N+ +G L L LS N++ P
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 72/304 (23%), Positives = 117/304 (38%), Gaps = 28/304 (9%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L L Q+ P + NL LT + + N+ + L L++L L + +S
Sbjct: 69 EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD 124
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
P L++ T++ S AN + + L ++T L + + S + P + N + L
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDL 179
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSI 258
L L N + P L L++L +FT Y N I+D+ + L G N T
Sbjct: 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
P L+N S L L+ N ++ L L LN N++ + L N
Sbjct: 238 P--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--------ISVLNN 285
Query: 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378
+ L L L N G E I L T+L L + N + P + +L +
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342
Query: 379 NNLS 382
+
Sbjct: 343 QVIK 346
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 81/423 (19%), Positives = 130/423 (30%), Gaps = 58/423 (13%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLS 139
L +L IG L L +N+ N H ++P L L ++L+YNY+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 140 GKIPTNLSHCTELRSFEAS---ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-G 195
+L E S + + I I DQ KL + L + + NI
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT 255
N + L V L E+ + S + GL + F
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIME------------GLCDVTIDEFRLTYTNDF 274
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
V +N+ + A + E+ L+ + +L DL FLK
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 316 L-------------ANCTSLEVLGLAQNGFGGEMPISIANLS------------------ 344
L SL L L++N S ++L
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392
Query: 345 ------THLRILTMGYNLMHGNIPVG-IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397
L+ L ++ + +L L L + N + L L
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 398 LELNANKFSGFMPSS-LGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456
L++ N F S+ N T L+ L + + + E +LQ+LN+S NNL
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 457 IPK 459
Sbjct: 513 DSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 74/413 (17%), Positives = 123/413 (29%), Gaps = 59/413 (14%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
+ L L + P S LT+L + + + IG+L L+ LN+ +N++
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 141 -KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGN----IPAWVG 195
K+P S+ T L + S N + L L + + L + +++ N I
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQAF 201
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQ-LSALGFFTLYENFISDV------------GLTLP 242
L L L N +I Q L+ L L D GL
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
+ F V +N+ + A + E+ L+ + +L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319
Query: 303 GSREIGDLNFLKFL-------------ANCTSLEVLGLAQNGFGGEMPISIANLS-THLR 348
DL FLK L SL L L++N S ++L LR
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408
L + +N + L L L + + L
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE---------------------- 416
Query: 409 MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
S+ +L L L + + L L ++ N+ V
Sbjct: 417 -FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 61/401 (15%), Positives = 107/401 (26%), Gaps = 41/401 (10%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKL----QDLNLTYNYLSGKIPTNLSH 148
+PA NLTNL ++L N ++ L++ L+++ N + I
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202
Query: 149 CTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWVGNFSSLQ------ 201
+L N I + L L + RL + S ++
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 202 --VLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV--GLTLPNLKIFAGGVNYFTGS 257
L N + L+ + +L I + + +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK--- 314
+ L L+ L N + I +L L L+ +N L + L
Sbjct: 323 PTLDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 315 ----------------FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH 358
L+ L + S L L + Y
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 359 GNIPVGIENLVNLSLLGLEGNNLSGSVP-EVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
+ L +L+ L + GN+ + V L L+L+ + L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
L L M N L L+ S N + +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 73/375 (19%), Positives = 119/375 (31%), Gaps = 41/375 (10%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
+P I ++ I+L N +LQ L+L+ + L
Sbjct: 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
+ + N P LT LE + + L +G +L+ L +A N +H
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 213 -SIPNELGQLSALGFFTLYENFISDV-GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQV 270
+P L+ L L N+I + L L+ N
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR-----------------ENPQVNLS 185
Query: 271 LDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
LD + N + + F +K L L N S + L N L V L
Sbjct: 186 LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKT-----CLQNLAGLHVHRLILG 239
Query: 331 GFGGEMPISIANLST-------HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383
F E + I S + + Y + V L N+S + L G ++
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299
Query: 384 SVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKL 443
+ + K + L + + F L L L+ + N+ GSI L
Sbjct: 300 LED--VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNK--GSISFKKVALPSL 352
Query: 444 QVLNLSSNNLNGTIP 458
L+LS N L+ +
Sbjct: 353 SYLDLSRNALSFSGC 367
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 67/365 (18%), Positives = 111/365 (30%), Gaps = 30/365 (8%)
Query: 81 TVLKLESKQLVGSIPA-SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ--------DL 131
L L +I + NL L L F + EI ++ +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 132 NLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP 191
LTY + + + I + D + K + + + L
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLED-VPKHFKWQSLSIIRCQLKQFPT 324
Query: 192 AWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG------LTLPNLK 245
+ L+ L L N SI + L +L + L N +S G L +L+
Sbjct: 325 L---DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGS 304
N + + LQ LDF + L + F SL+ L+ L+
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
G TSL L +A N F ++ +T+L L + +
Sbjct: 439 DFDG------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
+ L L LL + NNL +L L L+ + N+ L+ +
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 425 EENRF 429
N
Sbjct: 553 TNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 16/84 (19%), Positives = 25/84 (29%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+T L L QL L L +N+ N +L L L+ ++N +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 139 SGKIPTNLSHCTELRSFEASANDF 162
L F + N
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSV 557
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-32
Identities = 90/380 (23%), Positives = 145/380 (38%), Gaps = 36/380 (9%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L + ++ +L +T + + + + + L L +N + N L+
Sbjct: 26 KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
P L + T+L + N P L +LT L + L + +T P + N ++
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTN 135
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLT-LPNLKIFAGGVNYFTGSI 258
L L L+ N + S + L L++L + L L L+ N +
Sbjct: 136 LNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-- 191
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
L+ +NL+ L N ++ P G L +L L+ + N+L + LA+
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--------IGTLAS 241
Query: 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378
T+L L LA N P+S L T L L +G N + P + L L+ L L
Sbjct: 242 LTNLTDLDLANNQISNLAPLS--GL-TKLTELKLGANQISNISP--LAGLTALTNLELNE 296
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLG 438
N L P I L L L L N S S + +LT L RL N+ SL
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD--VSSLA 350
Query: 439 NCKKLQVLNLSSNNLNGTIP 458
N + L+ N ++ P
Sbjct: 351 NLTNINWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 3e-32
Identities = 102/381 (26%), Positives = 151/381 (39%), Gaps = 38/381 (9%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
VT L+ + + + L NLT IN N+ P + L KL D+ + N ++
Sbjct: 48 VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
T L++ T L N P L +LT L + L ++ ++ +I A + +S
Sbjct: 104 D--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTS 157
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL--TLPNLKIFAGGVNYFTGS 257
LQ L N + P L L+ L + N +SD+ + L NL+ N +
Sbjct: 158 LQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 214
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
P L +NL L N L SL +L L+ N++ + L L+
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--------LAPLS 262
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
T L L L N +A L T L L + N + P I NL NL+ L L
Sbjct: 263 GLTKLTELKLGANQISN--ISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLY 317
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
NN+S P + L KL+ L NK S SSL NLT ++ L N+ P L
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 371
Query: 438 GNCKKLQVLNLSSNNLNGTIP 458
N ++ L L+
Sbjct: 372 ANLTRITQLGLNDQAWTNAPV 392
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 84/392 (21%), Positives = 148/392 (37%), Gaps = 42/392 (10%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T + + QL P + NLT L I + N+ + L L L L N ++
Sbjct: 71 TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
L + T L E S+N L LT L+ + G +T P + N ++L
Sbjct: 127 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QVTDLKP--LANLTTL 179
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSI 258
+ L ++ N + S + L +L+ L N ISD+ L NL + N
Sbjct: 180 ERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-- 235
Query: 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL-GSREIGDLNFLKFL- 316
+L++ +NL LD A N ++ P L L L N++ + L L L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 293
Query: 317 ------------ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
+N +L L L N +++L T L+ L N + +
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLYFNNI--SDISPVSSL-TKLQRLFFYNNKV--SDVSS 348
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
+ NL N++ L N +S P + L ++ L LN ++ + N+++ + +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456
P ++ + +++ N + T
Sbjct: 407 VTGAL--IAPATISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 5e-30
Identities = 86/380 (22%), Positives = 142/380 (37%), Gaps = 37/380 (9%)
Query: 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY 137
G + + + I + L L + + L ++ L
Sbjct: 1 GPLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57
Query: 138 LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNF 197
+ + + L S N P L +LTKL I + + + P + N
Sbjct: 58 IK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111
Query: 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFT 255
++L L L N + P L L+ L L N ISD+ L +L+ + G N T
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVT 168
Query: 256 GSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
P L+N + L+ LD + N ++ L +L L N++ +
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--------ITP 216
Query: 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLG 375
L T+L+ L L N + ++A+L T+L L + N + P + L L+ L
Sbjct: 217 LGILTNLDELSLNGNQL--KDIGTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELK 271
Query: 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP 435
L N +S P + L L LELN N+ S + NL L+ L + N P
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP- 326
Query: 436 SLGNCKKLQVLNLSSNNLNG 455
+ + KLQ L +N ++
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD 345
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 84/336 (25%), Positives = 134/336 (39%), Gaps = 34/336 (10%)
Query: 125 LQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184
L + L ++ + + ++ + +A + D + L L I +
Sbjct: 23 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 78
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLP 242
LT P + N + L +L+ N + P L L+ L TL+ N I+D+ L
Sbjct: 79 QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLT 134
Query: 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
NL N + +LS ++LQ L F + +L L RL+ N++
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV 189
Query: 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362
+ LA T+LE L N + L T+L L++ N +
Sbjct: 190 SD--------ISVLAKLTNLESLIATNNQI--SDITPLGIL-TNLDELSLNGNQLKD--I 236
Query: 363 VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422
+ +L NL+ L L N +S P + L KL L+L AN+ S S L LT L+ L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNL 292
Query: 423 LMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+ EN+ E P + N K L L L NN++ P
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 3e-22
Identities = 68/313 (21%), Positives = 115/313 (36%), Gaps = 28/313 (8%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
+ NLT L +++ N+ + +L L+ L T N +S P L T L
Sbjct: 172 PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
+ N L SLT L + L + ++ P + + L L L N + P
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282
Query: 217 ELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFA 274
L L+AL L EN + D+ L NL N + P +S+ + LQ L F
Sbjct: 283 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339
Query: 275 ENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG 334
N ++ + +L ++ L+ N++ L LAN T + LGL +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISD--------LTPLANLTRITQLGLNDQAWTN 389
Query: 335 EMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK 394
P++ + + + P I + + + + N S EV ++
Sbjct: 390 A-PVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQ 445
Query: 395 LEGLELNANKFSG 407
+ FSG
Sbjct: 446 PVTIGKGTTTFSG 458
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 27/156 (17%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T L L + P + +LT L + + N+ + L + L+ +N +S
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG------------------ 182
P L++ T + + + + +++ ++
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425
Query: 183 ---TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215
T NL FS + G++
Sbjct: 426 PDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 82/412 (19%), Positives = 133/412 (32%), Gaps = 70/412 (16%)
Query: 76 SNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL---------- 125
SN + S L +P N+ + T + + P G
Sbjct: 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 126 ---QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182
++ +L L LS +P H L AS N + ++P+ SL L +
Sbjct: 68 CLDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNS-LTELPELPQSLKSLLVDNNN 122
Query: 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLP 242
L+ P L+ L ++ N L +P EL S L + N + + P
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDLPP 173
Query: 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
+L+ A G N +P L N L + N L +P+ SL+ + N L
Sbjct: 174 SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNIL 227
Query: 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP 362
L L N L + N ++ +L L L + N + ++P
Sbjct: 228 EE--------LPELQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDNYLT-DLP 273
Query: 363 VGIENLVNLSLLGLEGNNLSGSVP-------------EVIGRLNKLEGLELNANKFSGFM 409
++L L + + LS P + LE L ++ NK
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL- 332
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
P+ L L N +P N L+ L++ N L P
Sbjct: 333 PALPPRLERLI---ASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIP 376
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 67/358 (18%), Positives = 129/358 (36%), Gaps = 52/358 (14%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
+ N + L I++ N ++P+ L+ + N L ++P L + L +
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIY 201
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
A N + ++PD +SL + +N+ +P + N L + N L ++P+
Sbjct: 202 ADNNS-LKKLPDLPLSLESIVA----GNNILEELPE-LQNLPFLTTIYADNNLLK-TLPD 254
Query: 217 ELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAEN 276
L AL Y + ++ +L L + + + P NL L+ + N
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSN 307
Query: 277 GLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336
+ ++ + SL+ LN N+L A LE L + N
Sbjct: 308 EIR-SLCDLPPSLE---ELNVSNNKLIE----------LPALPPRLERLIASFNHLA--- 350
Query: 337 PISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396
+ L +L+ L + YN + P E++ +L + N+ VPE+ L+
Sbjct: 351 --EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQ---NLK 399
Query: 397 GLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
L + N P ++ L M R + KL+ ++ +
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 64/349 (18%), Positives = 122/349 (34%), Gaps = 53/349 (15%)
Query: 118 IPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLE 177
I LQ+ + L+ ++P + + + +++ P ++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 178 IIRLGTSNLTG------------NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG 225
+ RL ++P + L+ L+ + N+L +P L +L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLL 117
Query: 226 FFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285
+SD+ L L + N +P L N+S L+++D N L +P+
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSN---NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL 171
Query: 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345
SL+ + N+L L L N L + N ++P +L +
Sbjct: 172 PPSLE---FIAAGNNQLEE--------LPELQNLPFLTAIYADNNSL-KKLPDLPLSLES 219
Query: 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKF 405
+ G N++ ++NL L+ + + N L ++P++ LE L + N
Sbjct: 220 ----IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYL 269
Query: 406 SGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ P +LT L + P L LN SSN +
Sbjct: 270 TDL-PELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR 310
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-26
Identities = 69/399 (17%), Positives = 134/399 (33%), Gaps = 27/399 (6%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
+ L L ++ + NL + L +R + + L L+ L+L+ N+LS
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWV-GNF 197
+ + L+ N + L LT L+ +R+G I
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNY 253
+SL L + +L L + + TL+ + + + L +++
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE-----LGSREIG 308
L + + E+F L L+R + +E +G
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 309 DLNFLKFLA-------NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI 361
D N + ++ L + Q ++ + L ++ +T+ + + +
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LV 325
Query: 362 PVGI-ENLVNLSLLGLEGNNLSGSV---PEVIGRLNKLEGLELNANKFS--GFMPSSLGN 415
P ++L +L L L N + G L+ L L+ N L
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
L L+ L + N F +P S +K++ LNLSS +
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 52/384 (13%), Positives = 115/384 (29%), Gaps = 20/384 (5%)
Query: 81 TVLKLESKQLVGSIPA-SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L++ + + I LT+L + + + + ++ + L L + +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
+ + +R E + L ++ +
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259
L +L + + L L + + ++ Y +
Sbjct: 246 LLRYILELSEVE-FDDCTLNGLGDFNPSES-DVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
S ++ + + + LK L L+ +N + + +
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA---CKGAW 360
Query: 320 TSLEVLGLAQNGFG--GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
SL+ L L+QN + + L +L L + N H +P + + L L
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
+ V LE L+++ N F L L L + N+ + ++P +
Sbjct: 419 STGIR-VVKT--CIPQTLEVLDVSNNNLDSF-SLFLPRLQELY---ISRNKLK-TLPDA- 469
Query: 438 GNCKKLQVLNLSSNNLNGTIPKEV 461
L V+ +S N L ++P +
Sbjct: 470 SLFPVLLVMKISRNQLK-SVPDGI 492
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 57/353 (16%), Positives = 119/353 (33%), Gaps = 41/353 (11%)
Query: 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQ-LISLTK 175
IP + ++ L+L++N ++ +L C L+ ++ I I SL
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGS 75
Query: 176 LEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG-SIPNELGQLSALGFFTLYENFI 234
LE + L ++L+ +W G SSL+ L L N + + L+ L +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-- 133
Query: 235 SDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294
F+ + + ++L L+ L ++ S++D+
Sbjct: 134 -----------------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF------GGEMPISIANLSTHLR 348
L +E + ++ L++ LE+ F E+ + L+
Sbjct: 177 LTLHLSES--AFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK--------LEGLEL 400
+LT + I L + N L P +++ + L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 401 NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
+ + L + R+ +E ++ + K L+ L+LS N +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 25/260 (9%)
Query: 195 GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254
G ++++ L L+ N + +L + L L + I+ +
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE---------------- 66
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314
+ + +L+ LD ++N L+ FG L L LN N + L
Sbjct: 67 ----GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-----LGVTS 117
Query: 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLL 374
N T+L+ L + E+ T L L + + ++++ ++ L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 375 GLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
L + + + L+ + LEL + F S L V S + R
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 435 PSLGNCKKLQVLNLSSNNLN 454
S KL L + +
Sbjct: 238 ESFNELLKLLRYILELSEVE 257
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 7e-14
Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 11/201 (5%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
SIP L+ + ++ LD + N +T + + +L L + + + E L
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL--- 73
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN-LMHGNIPVGIENLVNLSLLG 375
SLE L L+ N L + L+ L + N + NL NL L
Sbjct: 74 ---GSLEHLDLSDNHLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 376 LEGNNLSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
+ + L L LE+ A + SL ++ + L + + +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 435 PSLGNCKKLQVLNLSSNNLNG 455
++ L L NL
Sbjct: 190 IFADILSSVRYLELRDTNLAR 210
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 73/374 (19%), Positives = 128/374 (34%), Gaps = 39/374 (10%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN-LSHCTELRSFEAS 158
L + L N L++LQ L L Y I + LR +
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 159 ANDFIGQIPDQ-LISLTKLEIIRLGTSNLTGNI--PAWVGNFSSLQVLLLARNNLHG-SI 214
++ I + L L +RL L+ + + N +L L L++N + +
Sbjct: 82 SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 215 PNELGQLSALGFFTLYENFISDV------GLTLPNLKIFAGGVNYFTGSIPVSLSNASN- 267
G+L++L N I V L L F+ N + V N
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 268 -----LQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322
L++LD + NG T I NF N + + L +
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNF------------SNAISKSQAFSLILAH------HI 242
Query: 323 EVLGLAQNGFGGEMPISIANL-STHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNN 380
G + + A L + +R L + + + ++ + E L +L +L L N
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNK 301
Query: 381 LSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
++ E L+ L+ L L+ N S+ L ++ + +++N +
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 441 KKLQVLNLSSNNLN 454
+KLQ L+L N L
Sbjct: 362 EKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 6e-22
Identities = 82/432 (18%), Positives = 142/432 (32%), Gaps = 59/432 (13%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI--PEEIGRLQKLQDLNLTYNYL 138
+L L S ++ P + L +L + L+ + L+ L L+L+ N +
Sbjct: 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Query: 139 SG-KIPTNLSHCTELRSFEASANDFIGQIPDQLISLT--KLEIIRLGTSNLTGNIPAWV- 194
+ + L+S + S+N +L L L L ++L +
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195
Query: 195 -----------------GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237
GN ++ + N + S L + + I D
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255
Query: 238 ------GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKD 291
GL +++ + +L+VL+ A N + E F L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 292 LVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILT 351
L LN N L E+ NF + + L +N + L L+ L
Sbjct: 316 LQVLNLSYNLL--GELYSSNF----YGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLD 368
Query: 352 MGYNLMH--------------GNIPVGIENLV-NLSLLGLEGNNLSG-SVPEVIGRLNKL 395
+ N + GN V + + +L+ L N L + + R+ L
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428
Query: 396 EGLELNANKFSGFMPSSL-GNLTVLSRLLMEENRFEGSIPPSL-----GNCKKLQVLNLS 449
+ L LN N+FS L +L + EN + + L LQVL L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488
Query: 450 SNNLNGTIPKEV 461
N LN ++P V
Sbjct: 489 HNYLN-SLPPGV 499
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 73/328 (22%), Positives = 112/328 (34%), Gaps = 36/328 (10%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
V L L + L +L +NL N+ + E L LQ LNL+YN L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
+N ++ + N L KL+ + L + LT + S
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPS 382
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259
+ + L+ N L L L N I L NL I
Sbjct: 383 IPDIFLSGNK-----------LVTLPKINLTANLIHLSENRLENLDILY----------- 420
Query: 260 VSLSNASNLQVLDFAENGLTGTIPE-NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
L +LQ+L +N + + L +L +N L +L + F
Sbjct: 421 -FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF-EG 478
Query: 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378
+ L+VL L N P ++L T LR L++ N + + NL +L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHL-TALRGLSLNSNRLT-VLSHND-LPANLEILDISR 535
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFS 406
N L P+V L L++ NKF
Sbjct: 536 NQLLAPNPDV---FVSLSVLDITHNKFI 560
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 56/270 (20%), Positives = 94/270 (34%), Gaps = 32/270 (11%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138
+ VL L L ++ L + I+L +N + L+KLQ L+L N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS 198
T + + S N + +P ++ + + NL +I ++
Sbjct: 375 -----TTIHFIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENL--DILYFLLRVP 426
Query: 199 SLQVLLLARNNLHGSIPNEL-GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGS 257
LQ+L+L +N ++ + +L L EN + T +F
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF---------- 476
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
S+LQVL N L P F L L L+ + N L L
Sbjct: 477 -----EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN--------RLTVLSHND 523
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHL 347
+LE+L +++N P +LS
Sbjct: 524 LPANLEILDISRNQLLAPNPDVFVSLSVLD 553
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 9e-06
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLM 424
+ L L L N + L +L+ LEL + + + NL L L +
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTI 457
++ P + L L L L+ +
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-25
Identities = 72/404 (17%), Positives = 132/404 (32%), Gaps = 46/404 (11%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ----DLNLTYNYLSGKIPTNLSH 148
+P NLTNL ++L N+ ++ L ++ L+L+ N ++ I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198
Query: 149 CTELRSFEASANDFIGQIPDQLIS-LTKLEIIRL------GTSNLTGNIPAWVGNFSSLQ 201
L N + I L LE+ RL NL + + +L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 202 VLLLARNNLHGS---IPNELGQLSALGFFTLYENFISDV-----GLTLPNLKIFAGGVNY 253
+ L I + L+ + F+L I V +L++
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 254 FTGSIPVSL----------------SNASNLQVLDFAENGLT--GTIPENFGSLKDLVRL 295
F SL + +L+ LD + NGL+ G ++ L L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355
+ N + + LE L + S+ +L L + +
Sbjct: 379 DLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 356 LMHGNIPVGIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKLEGLELNANKFSGFMPSSLG 414
L +L +L + GN+ + P++ L L L+L+ + P++
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 415 NLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+L+ L L M N+ + LQ + L +N + + P
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 69/405 (17%), Positives = 129/405 (31%), Gaps = 42/405 (10%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL-S 139
+ L L + + L++L + + IG L+ L++LN+ +N + S
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGN----IPAWVG 195
K+P S+ T L + S+N L L ++ ++ L + +L+ N I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAF 197
Query: 196 NFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254
L L L N ++ + L+ L L + NL+ F
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----EGNLEKFDKSA--- 250
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314
L NL + +F L + + L ++ L S I +
Sbjct: 251 -------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS--SFSLVSVTIERVKDFS 301
Query: 315 FLANCTSLEVLGLAQNGFGGEMPISIANLS---------------THLRILTMGYNLMH- 358
+ LE++ F S+ L+ L L + N +
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 359 -GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSS-LGNL 416
G +L L L N + ++ L +LE L+ + S +L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 417 TVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L L + + L+VL ++ N+ ++
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 63/407 (15%), Positives = 120/407 (29%), Gaps = 49/407 (12%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
IP ++ + ++L N +LQ L+L+ + + L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNL-H 211
+ + N L+ L+ + +NL +G+ +L+ L +A N +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 212 GSIPNELGQLSALGFFTLYENFISDVG----LTLPNLKIFAGGVNY---FTGSIPVSLSN 264
+P L+ L L N I + L + + ++ I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 265 ASNLQVLDFAENGLTGTIPENF----------------------------GSLKDLVRLN 296
L L N + + + +L+ L L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 297 FDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNL 356
++ L + + + T++ L S HL ++ +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 357 MHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK--FSGFMPSSLG 414
L +L L N + EV L LE L+L+ N F G S
Sbjct: 319 FPTL------KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 415 NLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
T L L + N ++ + ++L+ L+ +NL V
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 3/119 (2%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN-LSHCTELRSFEAS 158
+L NL +++ L L+ L + N + + L + S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 159 ANDFIGQIPDQ-LISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
+ Q+ SL+ L+++ + ++ L +SLQ + L N S P
Sbjct: 479 QC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 75/377 (19%), Positives = 132/377 (35%), Gaps = 75/377 (19%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
C + VL + L ++P + ++T + + N +P L+ L
Sbjct: 37 CLNNG--NAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---E 87
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192
++ N L+ +P EL F +P L KL I N ++P
Sbjct: 88 VSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLWI----FGNQLTSLPV 138
Query: 193 WVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVN 252
LQ L ++ N L S+P +L L Y N ++
Sbjct: 139 LPPG---LQELSVSDNQL-ASLPALPSELCKL---WAYNNQLT----------------- 174
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNF 312
S+P+ S LQ L ++N L ++P L L N N
Sbjct: 175 ----SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYN--------------NR 212
Query: 313 LKFL-ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNL 371
L L A + L+ L ++ N S+ L + L+ L + N + ++P+ L++L
Sbjct: 213 LTSLPALPSGLKELIVSGNRLT-----SLPVLPSELKELMVSGNRL-TSLPMLPSGLLSL 266
Query: 372 SLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431
S+ N L+ +PE + L+ + L N S +L +T RF+
Sbjct: 267 SV---YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322
Query: 432 SIPPSLGNCKKLQVLNL 448
+ + + L +
Sbjct: 323 AGASAPRETRALHLAAA 339
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 7e-22
Identities = 65/353 (18%), Positives = 110/353 (31%), Gaps = 95/353 (26%)
Query: 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
+N+ ++ +P+ + + L + N L+ +P L E S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91
Query: 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQ 220
+ +P L +L I ++L S L L + N L S+P
Sbjct: 92 Q-LTSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPG 142
Query: 221 LSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTG 280
L L ++ +N ++ S+P S L L N LT
Sbjct: 143 LQEL---SVSDNQLA---------------------SLPALPSE---LCKLWAYNNQLT- 174
Query: 281 TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340
++P L+ L+ N+L SL P
Sbjct: 175 SLPMLPSGLQ---ELSVSDNQL-----------------ASL--------------PTLP 200
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL 400
+ L L N ++P L L + N S+P + L +L +
Sbjct: 201 SEL-YKLWAY----NNRLTSLPALPSGLKELIVS----GNRLTSLPVLPSELKELM---V 248
Query: 401 NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
+ N+ + P L LS + N+ +P SL + +NL N L
Sbjct: 249 SGNRLTSL-PMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 41/208 (19%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS--REIGDLNFLKF-------- 315
+ VL+ E+GLT T+P+ + L N L S +L L+
Sbjct: 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL 96
Query: 316 ---LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLS 372
L + + L + L L + N + ++PV L LS
Sbjct: 97 PVLPPGLLELSIFSNPLT--------HLPALPSGLCKLWIFGNQLT-SLPVLPPGLQELS 147
Query: 373 LLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432
+ +N S+P + L KL N+ + P L LS + +N+ S
Sbjct: 148 V----SDNQLASLPALPSELCKLW---AYNNQLTSL-PMLPSGLQELS---VSDNQLA-S 195
Query: 433 IPPSLGNCKKLQVLNLSSNNLNGTIPKE 460
+P L L +N L ++P
Sbjct: 196 LPTLPSE---LYKLWAYNNRLT-SLPAL 219
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 73/391 (18%), Positives = 129/391 (32%), Gaps = 30/391 (7%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYL 138
V + L + S L +L + + Q I L L L L YN
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 139 SGKIPTN-LSHCTELRSFEASANDFIGQI--PDQLISLTKLEIIRLGTSNLTGNIPAWV- 194
++ T + L + + G + + LT LE++ L +N+ PA
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 195 GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254
N VL L N + +L F L L ++ + +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR----------LSSITLQDMNEYWL 200
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL--NF 312
+ +++ LD + NG ++ + F ++
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 313 LKFLANCT-------SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
K N T ++ L+++ + S+ + T L LT+ N ++ I
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318
Query: 366 -ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
L +L L L N L + L+KLE L+L+ N S L L L +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 425 EENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454
+ N+ + S+P LQ + L +N +
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 19/206 (9%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 325
+++ +D + N + +F L+DL L +Q I + F +SL +L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTF----RGLSSLIIL 84
Query: 326 GLAQNGFGGEMPISIANLSTHLRILTMGYN-LMHGNIPVGI-ENLVNLSLLGLEGNNLSG 383
L N F ++ N +L +LT+ L + + L +L +L L NN+
Sbjct: 85 KLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 384 SVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL----------MEENRFEGS 432
P + + L+L NK L N L M E
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 433 IPPSLGNCKKLQVLNLSSNNLNGTIP 458
+ + L+LS N ++
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMA 229
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 339 SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEG 397
+ L H+ + + N + L +L L +E + L+ L
Sbjct: 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83
Query: 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP--SLGNCKKLQVLNLSSNNL 453
L+L+ N+F + L L L + + +G++ L++L L NN+
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 61/390 (15%), Positives = 120/390 (30%), Gaps = 31/390 (7%)
Query: 74 SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNL 133
+ R + K+ L ++ + + N+ ++L N ++ KL+ LNL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 134 TYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
+ N L +L + LR+ + + N + ++ +E + +N++ +
Sbjct: 66 SSNVLYE--TLDLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNIS-RVSC- 116
Query: 194 VGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL-----TLPNLKIFA 248
+ + LA N + + G S + + L N I V + L+
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 249 GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308
N+ + + L+ LD + N L + F S + ++ N+L E
Sbjct: 176 LQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKA 232
Query: 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENL 368
L +LE L NGF S + R+ T+ + E
Sbjct: 233 -------LRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 369 VNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV----LSRLLM 424
+L RL L+ E G L +
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ ++ I + L L+
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-20
Identities = 58/372 (15%), Positives = 109/372 (29%), Gaps = 47/372 (12%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
+I N + + + +++L+L+ N LS +L+ T+L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
S+N + + D + + S+L+ L L N +
Sbjct: 61 ELLNLSSNV-LYETLD-------------------------LESLSTLRTLDLNNNYV-- 92
Query: 213 SIPNELGQLSALGFFTLYENFISDV-GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVL 271
EL ++ N IS V K N T + S +Q L
Sbjct: 93 ---QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 272 DFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
D N + E S L LN N + +K L+ L L+ N
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSN 201
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVI 389
M + + +++ N + I + NL L GN G++ +
Sbjct: 202 KL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449
+ ++ + + TV + E P L+ +
Sbjct: 259 SKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316
Query: 450 SNNLNGTIPKEV 461
+ G+ + +
Sbjct: 317 LLSGQGSETERL 328
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 41/350 (11%), Positives = 95/350 (27%), Gaps = 46/350 (13%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLS 139
+ L + ++ G + + ++L N E L+ LNL YN++
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
+ + +L++ + S+N + + + S + I L + L I + +
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238
Query: 200 LQVLLLARNNLHGSIPNEL-----------------------GQLSALGFFTLYENFISD 236
L+ L N H + + + D
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 237 VG---------LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG 287
+ L + +G + + N + + +D + I +
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTL 357
Query: 288 SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHL 347
+ + L + L + L+ G E+ + S
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAH------AELDGTLQQAVG-QIELQHATEEQSPLQ 410
Query: 348 RILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397
+ + + + + + + + E RL KL G
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNG 459
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 66/344 (19%), Positives = 126/344 (36%), Gaps = 41/344 (11%)
Query: 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQ-LISLTK 175
+PE I + + L+L N + + L E + N + + +L
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFN 81
Query: 176 LEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI 234
L + L ++ L IP V S+L L ++ N + + L L + +N +
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 235 SDVGLTLPNLKIFAGGVNYFTGSIPV-SLSNASNLQVLDFAENGLTGTIPEN-FGSLKDL 292
I + S ++L+ L + LT +IP L L
Sbjct: 141 V---------------------YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178
Query: 293 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTM 352
+ L + I D +F L+VL ++ + M + +L L++
Sbjct: 179 IVLRLRHLNI--NAIRDYSF----KRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSI 231
Query: 353 GYNLMHGNIPVG-IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS 411
+ + +P + +LV L L L N +S ++ L +L+ ++L + + P
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 412 SLGNLTVLSRLLMEENRFEGSIPPSL-GNCKKLQVLNLSSNNLN 454
+ L L L + N+ ++ S+ + L+ L L SN L
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 67/361 (18%), Positives = 128/361 (35%), Gaps = 39/361 (10%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
CS + V K+ V ++P I T ++L +NR +E L++L
Sbjct: 8 ECSAQDRAVL---CHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 132 NLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQ-LISLTKLEIIRLGTSNLTGNI 190
L N +S P ++ LR+ +N + IP L+ L + + + + +
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 191 PAWVGNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVGLTLPNLKIFAG 249
+ +L+ L + N+L I + L++L TL + ++ +
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIP----------- 168
Query: 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD 309
+LS+ L VL + +F L L L +
Sbjct: 169 ---------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 310 LNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENL 368
+L L + +++ +L +LR L + YN + I + L
Sbjct: 220 C------LYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPIS-TIEGSMLHEL 271
Query: 369 VNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428
+ L + L G L+ P LN L L ++ N+ + S ++ L L+++ N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 429 F 429
Sbjct: 332 L 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 54/271 (19%), Positives = 95/271 (35%), Gaps = 16/271 (5%)
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG----LTLPNLKIFAGGVN 252
+ ++L L +N + +E L L EN +S V L NL+ N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 253 YFTGSIPV-SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLN 311
IP+ + SNL LD +EN + + F L +L L N+L I
Sbjct: 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL--VYISHRA 147
Query: 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNL 371
F + SLE L L + ++++L L +L + + ++ + L L
Sbjct: 148 F----SGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 372 SLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431
+L + ++ L L + + ++ +L L L + N
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS- 261
Query: 432 SIPP-SLGNCKKLQVLNLSSNNLNGTIPKEV 461
+I L +LQ + L L +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYA 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-21
Identities = 54/333 (16%), Positives = 99/333 (29%), Gaps = 45/333 (13%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
+I N + + + +++L+L+ N LS +L+ T+L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
S+N + + D + + S+L+ L L N +
Sbjct: 61 ELLNLSSNV-LYETLD-------------------------LESLSTLRTLDLNNNYV-- 92
Query: 213 SIPNELGQLSALGFFTLYENFISDVGL-TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVL 271
EL ++ N IS V K N T + S +Q L
Sbjct: 93 ---QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 272 DFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
D N + E S L LN N + +K L+ L L+ N
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSN 201
Query: 331 GFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVI 389
M + + +++ N + I + NL L GN G++ +
Sbjct: 202 KL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422
+ +++ + K + L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 45/296 (15%), Positives = 99/296 (33%), Gaps = 42/296 (14%)
Query: 166 IPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG 225
I + + + +I ++ S+L + + + +++ L L+ N L +L + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 226 FFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285
L N + + L + S L+ LD N +
Sbjct: 62 LLNLSSNVLYETL----------------------DLESLSTLRTLDLNNNYVQ-----E 94
Query: 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345
+ L+ N + + + LA N + +
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRG---------QGKKNIYLANNKITMLRDLDEGCR-S 144
Query: 346 HLRILTMGYN-LMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK 404
++ L + N + N + L L L+ N + V + KL+ L+L++NK
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202
Query: 405 FSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460
+ FM + ++ + + N+ I +L + L+ +L N + ++
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-17
Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 15/225 (6%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L L L A + T L +NL N + ++ L L+ L+L NY+
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-- 92
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
L + + A+ N I ++ + I L + +T G S +
Sbjct: 93 ---QELLVGPSIETLHAANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 201 QVLLLARNNLHG-SIPNELGQLSALGFFTLYENFISDV--GLTLPNLKIFAGGVNYFTGS 257
Q L L N + + L L NFI DV + LK N
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-F 205
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
+ +A+ + + N L I + ++L + N
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 41/198 (20%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
+I N + ++ ++ L + S ++ L+ N L DL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL------ 54
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGL 376
A T LE+L L+ N + +E+L L L L
Sbjct: 55 APFTKLELLNLSSN--------VLYETLD-------------------LESLSTLRTLDL 87
Query: 377 EGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436
N + + +E L N S S + + N+
Sbjct: 88 NNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLD 139
Query: 437 LGNCKKLQVLNLSSNNLN 454
G ++Q L+L N ++
Sbjct: 140 EGCRSRVQYLDLKLNEID 157
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLS 139
+ L + ++ G + + ++L N E L+ LNL YN++
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
+ + +L++ + S+N + + + S + I L + L I + +
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237
L+ L N H T+ + + +
Sbjct: 239 LEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKL 275
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 5e-19
Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 24/323 (7%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159
L N + + + ++++ LNL + ++ ++
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 160 NDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNE 217
N I +P + + L ++ L ++L+ ++P + N L L ++ NNL +
Sbjct: 109 N-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166
Query: 218 LGQLSALGFFTLYENFISDVGL-TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAEN 276
++L L N ++ V L +P+L N + +L+ ++ LD + N
Sbjct: 167 FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 221
Query: 277 GLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336
+ + +L L N L +L N L + L+ N M
Sbjct: 222 SIN-VVRG--PVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIM 270
Query: 337 PISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396
+ L L + N + + + + + L +L L N+L V + ++LE
Sbjct: 271 YHPFVKM-QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327
Query: 397 GLELNANKFSGFMPSSLGNLTVL 419
L L+ N S+ L L
Sbjct: 328 NLYLDHNSIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-16
Identities = 56/313 (17%), Positives = 102/313 (32%), Gaps = 42/313 (13%)
Query: 142 IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSL 200
I +NL + + I+L +I+ S + +PA + +F +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
++L L + + + N I + P
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--------------------PH 117
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
N L VL N L+ F + L L+ N L I D F T
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTF----QATT 171
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380
SL+ L L+ N + ++ + L + YNL+ + + + L N+
Sbjct: 172 SLQNLQLSSNRLTH---VDLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHNS 222
Query: 381 LSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
++ V +L L+L N + + L N L + + N E +
Sbjct: 223 IN-VVRG--PVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277
Query: 441 KKLQVLNLSSNNL 453
++L+ L +S+N L
Sbjct: 278 QRLERLYISNNRL 290
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 21/224 (9%)
Query: 239 LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298
++ I + + G ++L+N +++ F + + S + + LN +
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH 358
++ EI F A +++ L + N P N+ L +L + N +
Sbjct: 84 DLQI--EEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLS 136
Query: 359 GNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
++P GI N L+ L + NNL + L+ L+L++N+ + S + +L
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ + N +L ++ L+ S N++N + V
Sbjct: 196 HAN---VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV 230
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T+LKL+ L + N L ++L N + ++Q+L+ L ++ N L
Sbjct: 235 TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL 200
+ L+ + S N + + +LE + L +++ + +L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTL 347
Query: 201 QVLLLARNNLH 211
+ L L+ N+
Sbjct: 348 KNLTLSHNDWD 358
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 57/314 (18%), Positives = 105/314 (33%), Gaps = 44/314 (14%)
Query: 142 IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSL 200
I +NL + + I+L +I+ S + +PA + +F +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPV 260
++L L + + + N I + P
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--------------------PH 111
Query: 261 SLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
N L VL N L+ ++P F + L L+ N L I D F
Sbjct: 112 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTF----QAT 164
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
TSL+ L L+ N + ++ + L + YNL+ + + + L N
Sbjct: 165 TSLQNLQLSSNRLTH---VDLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN 215
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
+++ V +L L+L N + + L N L + + N E +
Sbjct: 216 SIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 440 CKKLQVLNLSSNNL 453
++L+ L +S+N L
Sbjct: 271 MQRLERLYISNNRL 284
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 58/342 (16%), Positives = 119/342 (34%), Gaps = 48/342 (14%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLS 139
++ ++ + A + + + +NL + +I +Q L + +N +
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFS 198
+P P ++ L ++ L ++L+ ++P + N
Sbjct: 107 -YLP-----------------------PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL-TLPNLKIFAGGVNYFTGS 257
L L ++ NNL + ++L L N ++ V L +P+L N +
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-- 199
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
+L+ ++ LD + N + + +L L N L +L
Sbjct: 200 ---TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--------TAWLL 245
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
N L + L+ N M + L L + N + + + + + L +L L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419
N+L V + ++LE L L+ N S+ L L
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 61/308 (19%), Positives = 110/308 (35%), Gaps = 29/308 (9%)
Query: 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGR-LQKLQDLNLTYNY 137
+V +L L Q+ + + + + N +P + + + L L L N
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128
Query: 138 LSGKIPTNL-SHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWVG 195
LS +P + + +L + S N+ + +I D T L+ ++L ++ LT ++
Sbjct: 129 LS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVDL--S 183
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GLTLPNLKIFAGGVNYF 254
SL ++ N L + L A+ N I+ V G L I N
Sbjct: 184 LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 238
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314
T L N L +D + N L + F ++ L RL N L +
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-------L 289
Query: 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLL 374
+ +L+VL L+ N + + L L + +N + + + L L
Sbjct: 290 YGQPIPTLKVLDLSHNHL-LHVERNQPQF-DRLENLYLDHNSIV-TLKLS--THHTLKNL 344
Query: 375 GLEGNNLS 382
L N+
Sbjct: 345 TLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 21/224 (9%)
Query: 239 LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298
++ I + + G ++L+N +++ F + + S + + LN +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH 358
++ EI F A +++ L + N P N+ L +L + N +
Sbjct: 78 DLQI--EEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLS 130
Query: 359 GNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
++P GI N L+ L + NNL + L+ L+L++N+ + S + +L
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ + N +L ++ L+ S N++N + V
Sbjct: 190 HAN---VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV 224
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 56/261 (21%), Positives = 85/261 (32%), Gaps = 29/261 (11%)
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTG 256
SS L L N L +L+ L +L N +S G
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---------------- 70
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
S ++L+ LD + NG+ T+ NF L+ L L+F + L ++
Sbjct: 71 --SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVF 122
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLG 375
+ +L L ++ L + L +L M N N I L NL+ L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP 435
L L P L+ L+ L ++ N F L L L N +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240
Query: 436 SL--GNCKKLQVLNLSSNNLN 454
L LNL+ N+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 53/267 (19%), Positives = 92/267 (34%), Gaps = 33/267 (12%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGK--IPTNLSHCT 150
S+P I ++ T + L N+ +L +L L+L+ N LS K + T
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNN 209
L+ + S N + + + L +LE + SNL V + +L L ++ +
Sbjct: 79 SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 210 LHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQ 269
+ LS+L + N ++ +P + NL
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGN-------------------SFQENFLPDIFTELRNLT 178
Query: 270 VLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328
LD ++ L + F SL L LN N S + SL+VL +
Sbjct: 179 FLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTF------PYKCLNSLQVLDYS 231
Query: 329 QNGFGGEMPISIANLSTHLRILTMGYN 355
N + + + L L + N
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 8/136 (5%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLS 139
L + + L++L + + N F +I L+ L L+L+ L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 140 GKIPTNLSHC-TELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIP--AWVG 195
++ + + L+ S N+ + L L+++ +++
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245
Query: 196 NFSSLQVLLLARNNLH 211
SSL L L +N+
Sbjct: 246 FPSSLAFLNLTQNDFA 261
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 56/272 (20%), Positives = 91/272 (33%), Gaps = 35/272 (12%)
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNL 244
NL +P + ++ ++L L N + N L L L N I +
Sbjct: 54 NLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE------ 104
Query: 245 KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+ + +NL L+ +N LT F L L L N +
Sbjct: 105 --------------IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-- 148
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI-ANLSTHLRILTMGYNLMHGNIPV 363
I F SL L L + + L ++LR L + + IP
Sbjct: 149 ESIPSYAF----NRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLR-EIP- 201
Query: 364 GIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL 423
+ L+ L L L GN+LS P L L+ L + ++ ++ NL L +
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 424 MEENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454
+ N +P L+ ++L N N
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 60/268 (22%), Positives = 98/268 (36%), Gaps = 27/268 (10%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
+CS +V K L +P I TN +NL +N+ L+ L+ L
Sbjct: 40 SCSNQFSKVI---CVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93
Query: 132 NLTYNYLSGKIPTN-LSHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGN 189
L+ N++ I + L + E N + IP+ L+KL+ + L + + +
Sbjct: 94 QLSRNHIR-TIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIE-S 150
Query: 190 IPAWVGNFS---SLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVG--LTLPN 243
IP+ F+ SL+ L L I LS L + L + ++ L
Sbjct: 151 IPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208
Query: 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNEL 302
L N+ + P S +LQ L ++ + I N F +L+ LV +N N L
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267
Query: 303 GSREIGDLNFLKFLANCTSLEVLGLAQN 330
LE + L N
Sbjct: 268 TLLPHD------LFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
+ST+ R+L + N + I V ++L +L +L L N++ L L LE
Sbjct: 60 DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL-GNCKKLQVLNLSSNNLNGTIP 458
L N+ + + L+ L L + N E SIP L+ L+L I
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS 177
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 67/407 (16%), Positives = 124/407 (30%), Gaps = 59/407 (14%)
Query: 97 SIGNLTNLTGINLFQNRFHG-QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSF 155
S NL ++L N F I +E G + +L+ L L+ +L ++H +
Sbjct: 85 SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Query: 156 EASANDFIGQIP---DQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
+ + Q + L I+ + V ++L++ +
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204
Query: 213 ------SIPNELGQLSALGFFTLYENFISDVGLT-------------------------- 240
SI +L L TL +
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264
Query: 241 ----------LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLK 290
L L I + F SN+ + +F +G +
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324
Query: 291 DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG-EMPISIANLSTHLRI 349
+ L+F N L + L T LE L L N + L+
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHL------TELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 350 LTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408
L + N + + G +L L + N L+ ++ + +++ L+L++NK
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI 436
Query: 409 MPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLN 454
P + L L L + N+ + S+P LQ + L +N +
Sbjct: 437 -PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 65/372 (17%), Positives = 123/372 (33%), Gaps = 32/372 (8%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L L + L S I +L + + + E+ LQ +L + +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTN 175
Query: 141 KIPTNLSHCTELRSFEASAND-----------FIGQIPDQLISLTKLEIIRLGTSNLTGN 189
K + + ++ + I +L + KL + L T N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 190 IPAWVGNF---SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKI 246
+ +++ ++ L G + S L + + P I
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 247 FAG---------GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNF 297
+ V+ + S S LDF+ N LT T+ EN G L +L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 298 DQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357
N+L + SL+ L ++QN + + + L L M N++
Sbjct: 356 QMNQLKELSKIAEMTTQM----KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Query: 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
I + + +L L N + S+P+ + +L L+ L + +N+ LT
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468
Query: 418 VLSRLLMEENRF 429
L ++ + N +
Sbjct: 469 SLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 61/388 (15%), Positives = 123/388 (31%), Gaps = 45/388 (11%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
++ L+ +P + T +N+ QN +I L KL+ L +++N +
Sbjct: 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSS 199
+ EL + S N + +I L+ + L + I GN S
Sbjct: 60 LDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFF-------TLYENFISDVGLTLPNLKIFAGGVN 252
L+ L L+ +L S + L+ E+ +L I
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN-ELGSREIGDLN 311
F + VS+ +NL++ + L L N L + E +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 312 FLKFLA--NCTSLEVLGLAQNGFGGEMPISIANLSTH----LRILTMGYNLMHGNIPVGI 365
F++ L T++ ++ G++ + S L I + ++
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
E N+++ + +++ L+ + N + + + G+LT
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-------- 348
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
+L+ L L N L
Sbjct: 349 ----------------ELETLILQMNQL 360
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 57/273 (20%), Positives = 94/273 (34%), Gaps = 37/273 (13%)
Query: 185 NLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNL 244
L+ +P + S+ + L L NN+ + L L L N I +
Sbjct: 65 GLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR----QIE-- 115
Query: 245 KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELG 303
+ + ++L L+ +N LT IP F L L L N +
Sbjct: 116 --------------VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI- 159
Query: 304 SREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI-ANLSTHLRILTMGYNLMHGNIP 362
I F SL L L + + L +L+ L +G + ++P
Sbjct: 160 -ESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIK-DMP 212
Query: 363 VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422
+ LV L L + GN+ P L+ L+ L + ++ S ++ L L L
Sbjct: 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 423 LMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454
+ N S+P + L L+L N N
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 60/265 (22%), Positives = 90/265 (33%), Gaps = 21/265 (7%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
+CS +V + L +P I +N +NL +N + L L+ L
Sbjct: 51 SCSNQFSKVV---CTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104
Query: 132 NLTYNYLSGKIPTN-LSHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGN 189
L N + +I + L + E N + IP L+KL + L + + +
Sbjct: 105 QLGRNSIR-QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIE-S 161
Query: 190 IPA-WVGNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVG--LTLPNLK 245
IP+ SL L L I L L + L I D+ L L+
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305
N+F P S S+L+ L + ++ F L LV LN N L S
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQN 330
L+ L L L N
Sbjct: 282 PHDLFTPLR------YLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
+ ++ R L + N + I +L +L +L L N++ L L LE
Sbjct: 71 QGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGTIP 458
L N + + L+ L L + N E SIP + L L+L I
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 63/371 (16%), Positives = 115/371 (30%), Gaps = 48/371 (12%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
S L LT ++ + I +L L L T N ++ +LS T L
Sbjct: 37 SEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLA 91
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
+N + + + LTKL + T+ LT + V L L ARN L I
Sbjct: 92 CDSNK-LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EID- 143
Query: 217 ELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFA 274
+ + L + N L N T + +S L L+
Sbjct: 144 -VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCD 199
Query: 275 ENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL------------ANCTSL 322
N +T + L L+ N+L ++ L L + + + L
Sbjct: 200 TNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKL 256
Query: 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS 382
L Q + +L+ + +++ + + + L LL + ++
Sbjct: 257 TTLHCIQT------DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310
Query: 383 GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKK 442
+ + + KL L LN + + + + T L L + +G
Sbjct: 311 -ELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPA 362
Query: 443 LQVLNLSSNNL 453
L +
Sbjct: 363 LNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 58/365 (15%), Positives = 115/365 (31%), Gaps = 44/365 (12%)
Query: 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDF 162
N +L L L+ + ++ T + T L ++N+
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN- 75
Query: 163 IGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222
I + L T L + ++ LT N+ V + L L N L + + Q
Sbjct: 76 ITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNP 127
Query: 223 ALGFFTLYENFISDVGLT-LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 281
L + N ++++ ++ L + + ++ + L LD + N +T
Sbjct: 128 LLTYLNCARNTLTEIDVSHNTQLTEL--DCHLNKKITKLDVTPQTQLTTLDCSFNKITE- 184
Query: 282 IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL------------ANCTSLEVLGLAQ 329
+ K L RLN D N + ++ L FL T L +
Sbjct: 185 --LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSV 242
Query: 330 NGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389
N + ++ L + L L + I + + L EG + +
Sbjct: 243 NPLT---ELDVSTL-SKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--V 293
Query: 390 GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449
+L L+ A + L L L + + + + KL+ L+
Sbjct: 294 THNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347
Query: 450 SNNLN 454
+ ++
Sbjct: 348 NAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 29/225 (12%)
Query: 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNE 301
N + +S + L LD + +T L L +L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75
Query: 302 LGSREIGDLNFLKFL------------ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRI 349
+ + ++ L +L T L L N + ++ L
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQN-PLLTY 131
Query: 350 LTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM 409
L N + + + + L+ L N + + +L L+ + NK +
Sbjct: 132 LNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL- 185
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ +L+RL + N + L +L L+ SSN L
Sbjct: 186 --DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 59/262 (22%), Positives = 92/262 (35%), Gaps = 40/262 (15%)
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG----LTLPNLKIFAGGVN 252
+L L N + + L L L N IS + L L+ N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNF 312
+P + LQ L EN +T F L ++ + N L S I + F
Sbjct: 111 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 313 LKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLS 372
L + +A N++T IP G+ +L+
Sbjct: 168 ----QGMKKLSYIRIADT-----------NITT---------------IPQGL--PPSLT 195
Query: 373 LLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432
L L+GN ++ + LN L L L+ N S SL N L L + N+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254
Query: 433 IPPSLGNCKKLQVLNLSSNNLN 454
+P L + K +QV+ L +NN++
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 66/344 (19%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
+P + + ++L N+ + L+ L L L N +S KI
Sbjct: 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS--------- 92
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
P L KLE + L + L +P +LQ L + N +
Sbjct: 93 --------------PGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITK 135
Query: 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272
+ L+ + L N + G+ + L +
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIE------------------NGAFQGMKKLSYIR 177
Query: 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332
A+ +T TIP+ G L L+ D N++ ++ + +L LGL+ N
Sbjct: 178 IADTNIT-TIPQ--GLPPSLTELHLDGNKI--TKVDAASL----KGLNNLAKLGLSFNSI 228
Query: 333 GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG------SVP 386
S+AN HLR L + N + +P G+ + + ++ L NN+S P
Sbjct: 229 SAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 387 EVIGRLNKLEGLELNANKFSGFM--PSSLGNLTVLSRLLMEENR 428
+ G+ L +N + PS+ + V + + + +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 67/356 (18%), Positives = 112/356 (31%), Gaps = 80/356 (22%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
SI I N +L+ N F N G + K + L
Sbjct: 2 SIMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENR-------------- 46
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
N+ + + + + + ++L NL+ ++P + + VL + +N L
Sbjct: 47 -------NEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI- 93
Query: 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272
S+P L L +N +S ++P ++ L+ LD
Sbjct: 94 SLPELPASLEYL---DACDNRLS---------------------TLPELPAS---LKHLD 126
Query: 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332
N LT +PE L+ +N D N+L TSLEVL + N
Sbjct: 127 VDNNQLT-MLPELPALLE---YINADNNQLTM----------LPELPTSLEVLSVRNNQL 172
Query: 333 GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLS----LLGLEGNNLSGSVPEV 388
+ L L L + NL+ ++P + N ++ +PE
Sbjct: 173 T-----FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225
Query: 389 IGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQ 444
I L+ + L N S + SL T F S + L
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 1e-13
Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 32/202 (15%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS--REIGDLNFLKFLANC---- 319
+ L L+ ++P+N + L QN L S L +L N
Sbjct: 59 NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLSTL 115
Query: 320 ----TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLG 375
SL+ L + N + L L + N + +P E +L +L
Sbjct: 116 PELPASLKHLDVDNNQL-----TMLPELPALLEYINADNNQLT-MLP---ELPTSLEVLS 166
Query: 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME----ENRFEG 431
+ N L+ +PE+ L E L+++ N P+ + ENR
Sbjct: 167 VRNNQLT-FLPELPESL---EALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRIT- 220
Query: 432 SIPPSLGNCKKLQVLNLSSNNL 453
IP ++ + + L N L
Sbjct: 221 HIPENILSLDPTCTIILEDNPL 242
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 9e-06
Identities = 43/234 (18%), Positives = 66/234 (28%), Gaps = 20/234 (8%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLT----GINLFQNRFHGQIPEEIGRLQKLQDLNLTYN 136
L + + L S+PA + +NR IPE I L + L N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240
Query: 137 YLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGN 196
LS +I +LS T + +I + + + R +T P +
Sbjct: 241 PLSSRIRESLSQQTAQP------DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNL--------KIFA 248
S + L +LS F V L L + FA
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354
Query: 249 GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302
+ +NL+ G + G+L L R F L
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEIL 408
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 12/148 (8%)
Query: 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQD----LNL 133
+ VL + + QL +P +L L ++ N +P R ++
Sbjct: 160 TSLEVLSVRNNQL-TFLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214
Query: 134 TYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
N ++ IP N+ + N +I + L T + +
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
Query: 194 VGNFSSLQVLLLARNNLHGSIPNELGQL 221
N + + +++ Q+
Sbjct: 274 --NTLHRPLADAVTAWFPENKQSDVSQI 299
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 8e-16
Identities = 55/257 (21%), Positives = 89/257 (34%), Gaps = 33/257 (12%)
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTG 256
+L L N++ ++ L L L N IS +
Sbjct: 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------------------ 94
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
+ S LQ L ++N L IP LV L N + R++ F
Sbjct: 95 --EKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRI--RKVPKGVF---- 143
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGL 376
+ ++ + + N A L L + + IP + L+ L L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHL 200
Query: 377 EGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436
+ N + E + R +KL L L N+ SL L L L ++ N+ +P
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 437 LGNCKKLQVLNLSSNNL 453
L + K LQV+ L +NN+
Sbjct: 260 LPDLKLLQVVYLHTNNI 276
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 66/345 (19%), Positives = 113/345 (32%), Gaps = 69/345 (20%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
++P I + T ++L N ++ LQ L L L N +S KI
Sbjct: 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIH--------- 94
Query: 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212
L KL+ + + ++L IP SSL L + N +
Sbjct: 95 --------------EKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRK 137
Query: 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272
L + + N + + G F G L L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGF---EPGAFDG----------------LKLNYLR 178
Query: 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332
+E LT IP+ + L L+ D N++ + I + + L LGL N
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKI--QAIELEDL----LRYSKLYRLGLGHNQI 229
Query: 333 GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE----- 387
S++ L LR L + N + +P G+ +L L ++ L NN++ V
Sbjct: 230 RMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCP 286
Query: 388 --VIGRLNKLEGLELNAN--KFSGFMPSSLGNLTVLSRLLMEENR 428
+ G+ L N + P++ +T + +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 361 IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
+P I + +LL L+ N++S + L L L L NK S + L L
Sbjct: 48 VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 421 RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+L + +N IPP+L L L + N + +PK V
Sbjct: 106 KLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 7e-15
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321
+ + + +T + L + ++ + +++ S ++ + +
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--------VQGIQYLPN 66
Query: 322 LEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
+ L L N I L+ +L L + N + ++ +++L L L LE N
Sbjct: 67 VTKLFLNGNKL-----TDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHN 119
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
+S + L +LE L L NK + + L LT L L +E+N+ I P L
Sbjct: 120 GIS--DINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAG 173
Query: 440 CKKLQVLNLSSNNL 453
KLQ L LS N++
Sbjct: 174 LTKLQNLYLSKNHI 187
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 4e-14
Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 25/261 (9%)
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GL-TLPNLKIFAGGVNY 253
F+ L + ++ ++ +L+++ + I V G+ LPN+ N
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 76
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL 313
T I L+N NL L EN + + + LK L L+ + N + +
Sbjct: 77 LT-DIK-PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISD--------I 124
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373
L + LE L L N ++ L T L L++ N + +I + L L
Sbjct: 125 NGLVHLPQLESLYLGNNKI--TDITVLSRL-TKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
L L N++S + L L+ LEL + + + NL V + + +
Sbjct: 180 LYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--T 235
Query: 434 PPSLGNCKKLQVLNLSSNNLN 454
P + + + N+ +
Sbjct: 236 PEIISDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-11
Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 49/292 (16%)
Query: 124 RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGT 183
+ NL ++ + + + A+ +D I + + L + + L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNG 74
Query: 184 SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPN 243
+ LT +I + N +L L L N + + + L L L +L N ISD+
Sbjct: 75 NKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDIN----- 125
Query: 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303
L + L+ L N + T L L L+ + N++
Sbjct: 126 -----------------GLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 166
Query: 304 SREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNI 361
+ LA T L+ L L++N + L+ +L +L +
Sbjct: 167 D--------IVPLAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKP 213
Query: 362 PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSL 413
NLV + + +L PE+I E + + S
Sbjct: 214 INHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 7e-11
Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 16/227 (7%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L+ K + ++ L ++ I + + + I L + L L N L+
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
I L++ L N I + L L KL+ + L + ++ +I + +
Sbjct: 79 -DI-KPLTNLKNLGWLFLDENK-IKDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GLT-LPNLKIFAGGVNYFTGS 257
L+ L L N + I L +L+ L +L +N ISD+ L L L+ N+ +
Sbjct: 133 LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-D 189
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+ +L+ NL VL+ + +L + L +
Sbjct: 190 LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 339 SIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396
I + + + L ++ + +++ SV + I L +
Sbjct: 13 QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVT 68
Query: 397 GLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
L LN NK + P L NL L L ++EN+ + + L + KKL+ L+L N ++
Sbjct: 69 KLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS 122
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 17/197 (8%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
++P L + +L +EN L L +LN D+ EL ++
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG------- 74
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLG 375
L L L+ N +P+ L L +L + +N + ++P+G L L L
Sbjct: 75 -TLPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 376 LEGNNLSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434
L+GN L ++P ++ KLE L L N + L L L LL++EN +IP
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 435 PSLGNCKKLQVLNLSSN 451
L L N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
+S ++ ++ + LT +P + KD L+ +N L + + L T
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATL------MPYT 55
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380
L L L + + + L L + +N + ++P+ + L L++L + N
Sbjct: 56 RLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 381 LSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL-GN 439
L+ + L +L+ L L N+ P L L +L + N +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
Query: 440 CKKLQVLNLSSNNLNGTIPK 459
+ L L L N+L TIPK
Sbjct: 171 LENLDTLLLQENSLY-TIPK 189
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 53/219 (24%), Positives = 78/219 (35%), Gaps = 45/219 (20%)
Query: 189 NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS--DVGLTLPNLKI 246
++P +L L+ N L+ L + L L ++ V TLP L
Sbjct: 28 DLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 247 FAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSR 305
N S+P+ L VLD + N LT ++P L +L L NEL +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
G L LE L LA N NL+ +P G+
Sbjct: 140 PPGLLTPT------PKLEKLSLANN-----------NLTE---------------LPAGL 167
Query: 366 -ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403
L NL L L+ N+L ++P+ + L L+ N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
T+L L L A++ T LT +NL + + G L L L+L++N L
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 141 KIPTNLSHCTELRSFEASANDFIGQI----PDQLISLTKLEIIRLGTSNLTGNIPAWV-G 195
+P L + S N ++ L L +L+ + L + L +P +
Sbjct: 91 SLPLLGQTLPALTVLDVSFN----RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 196 NFSSLQVLLLARNNLHGSIPNEL-GQLSALGFFTLYENFISDV 237
L+ L LA NNL +P L L L L EN + +
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLS 139
L L QL S+P L LT +++ NR +P L +LQ+L L N L
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFS 198
+P L L KLE + L +NLT +PA +
Sbjct: 138 -TLPPGL-----------------------LTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 199 SLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232
+L LLL N+L+ +IP L F L+ N
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 43/284 (15%)
Query: 189 NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFA 248
+IP+ G +++ L L+ N + ++L + L L N I+
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------------- 89
Query: 249 GGVNYFTGSIPV-SLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSRE 306
+I S S+ +L+ LD + N L+ + + F L L LN N +
Sbjct: 90 --------TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-- 138
Query: 307 IGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI- 365
+G+ + L T L++L + ++ T L L + + + +
Sbjct: 139 LGETSLFSHL---TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSL 194
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSL--------GNLT 417
+++ N+S L L + + + +E LEL F S L
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+ + + + L L L S N L ++P +
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGI 296
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 34/271 (12%)
Query: 167 PDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNEL-GQLSAL 224
L L+ + L ++ + I + SL+ L L+ N L ++ + LS+L
Sbjct: 69 NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSL 126
Query: 225 GFFTLYENFISDVGLT-----LPNLKIFAGGVNYFTGSIPV-SLSNASNLQVLDFAENGL 278
F L N +G T L L+I G I + + L+ L+ + L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
Query: 279 TGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPI 338
P++ S++++ L + ++ +S+E L L
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT------SSVECLELRDTDLDTFHFS 240
Query: 339 SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398
++ T+ I + + +L V +++ +++ L L
Sbjct: 241 ELSTGETNSLI-----------------KKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282
Query: 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429
E + N+ LT L ++ + N +
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 13/141 (9%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLS 139
L++++ L P S+ ++ N++ + L + + E ++ L L L
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235
Query: 140 GKIPTNLS--------HCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP 191
+ LS R+ + + + Q+ L ++ L + + L ++P
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK-SVP 293
Query: 192 AWV-GNFSSLQVLLLARNNLH 211
+ +SLQ + L N
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWD 314
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 40/226 (17%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
++PV + + Q + N ++ +F + ++L L N L + L L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 317 -------------------ANCTSLEVLGLAQNGFGGEMPISIANLS-------THLRIL 350
L L L + + L L+ L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--------GLQELGPGLFRGLAALQYL 134
Query: 351 TMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM 409
+ N + +P +L NL+ L L GN +S L+ L+ L L+ N+ +
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454
P + +L L L + N ++P L + LQ L L+ N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 14/236 (5%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
C N + L ++P I I L NR + L L
Sbjct: 6 CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIP 191
L N L+ + L + S N + + L +L + L L +
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121
Query: 192 AWV-GNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVG----LTLPNLK 245
+ ++LQ L L N L ++P++ L L L+ N IS V L +L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQN 300
N P + + L L N L+ +P L+ L L + N
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 51/287 (17%), Positives = 102/287 (35%), Gaps = 27/287 (9%)
Query: 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231
+L I G SN+T + + + L + +I + L+ L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 232 NFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSL 289
N I+D+ L + N ++ +++ +++ LD +T L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDV--TPLAGL 128
Query: 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRI 349
+L L D N++ + + LA T+L+ L + +ANL + L
Sbjct: 129 SNLQVLYLDLNQITN--------ISPLAGLTNLQYLSIGNAQV--SDLTPLANL-SKLTT 177
Query: 350 LTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFM 409
L N + +I + +L NL + L+ N +S + + L + L +
Sbjct: 178 LKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQP 233
Query: 410 PSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456
NL V +++ P ++ + NL+ N +
Sbjct: 234 VFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 28/310 (9%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159
L N I ++ L + L+ ++ I + + L E
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72
Query: 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG 219
N I + L +LTK+ + L + L N+ A + S++ L L + P L
Sbjct: 73 NQ-ITDLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 220 QLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277
LS L L N I+++ L NL+ + G + P L+N S L L +N
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184
Query: 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP 337
++ SL +L+ ++ N++ + LAN ++L ++ L +
Sbjct: 185 ISDI--SPLASLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTLTNQTITNQPV 234
Query: 338 ISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397
NL + + P I + + L N S + V N+
Sbjct: 235 FYNNNLVVPNVVKGPSGAPI---APATISDNGTYASPNLTWNLTS-FINNVSYTFNQSVT 290
Query: 398 LELNANKFSG 407
+ FSG
Sbjct: 291 FKNTTVPFSG 300
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321
+N + ++ +T T+ L + L+ + + ++ + +
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--------IEGVQYLNN 64
Query: 322 LEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
L L L N +A L T + L + N + N+ I L ++ L L
Sbjct: 65 LIGLELKDNQI-----TDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTST 117
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
++ P + L+ L+ L L+ N+ + S L LT L L + + + P L N
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLTP-LAN 171
Query: 440 CKKLQVLNLSSNNL 453
KL L N +
Sbjct: 172 LSKLTTLKADDNKI 185
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 18/239 (7%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
+ + ++ +L +T ++ F E + L L L L N ++
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
L + T++ E S N + + + L ++ + L ++ +T P + S+
Sbjct: 77 D--LAPLKNLTKITELELSGNP-LKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GL-TLPNLKIFAGGVNYFTGS 257
LQVL L N + +I L L+ L + ++ +SD+ L L L N +
Sbjct: 131 LQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-D 187
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
I L++ NL + N ++ + +L + + ++ + N L
Sbjct: 188 IS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-09
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Query: 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
+ L NL G+ L N+ + L K+ +L L+ N L K + ++ +++ +
Sbjct: 59 VQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNE 217
++ P L L+ L+++ L + +T NI + ++LQ L + + +
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP- 168
Query: 218 LGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
L LS L +N ISD+ +LPNL N + P L+N SNL ++
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGS 304
+T + +LV N + G+
Sbjct: 227 QTITN---QPVFYNNNLVVPNVVKGPSGA 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 345 THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK 404
+ + G + + V +L ++ L G ++ E + LN L GLEL N+
Sbjct: 19 ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74
Query: 405 FSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+ + L NLT ++ L + N + ++ + + ++ L+L+S + P
Sbjct: 75 ITDL--APLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP 124
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 5e-13
Identities = 60/394 (15%), Positives = 122/394 (30%), Gaps = 53/394 (13%)
Query: 81 TVLKLESKQLVGSIP--ASIGNLTNLTGINLFQNRFHGQIPEEIGRLQ-KLQDLNLTYNY 137
L L +P GNLT LT + L +F + L L+L +
Sbjct: 124 RHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182
Query: 138 LSGKIPTNL----------------------------SHCTELRSFEASANDFIGQIPDQ 169
+ G +L +L + + + + +
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242
Query: 170 LISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV-----LLLARNNLHGSIPNELGQLSAL 224
++ + ++ V F L + + I E S
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Query: 225 GFFTLYEN---------FISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
+L + + I ++ V + S+ L+F +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
N T ++ + +LK L L +N L + L N +SLE L ++ N
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL----MTKNMSSLETLDVSLNSLNSH 418
Query: 336 MPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+ + +L + N++ G++ + + +L L N + S+P+ + L L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQAL 475
Query: 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429
+ L + +N+ LT L + + +N +
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 64/414 (15%), Positives = 130/414 (31%), Gaps = 47/414 (11%)
Query: 76 SNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPE--EIGRLQKLQDLNL 133
N + L + +L +I + +L ++L N F +P E G L KL L L
Sbjct: 98 FNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153
Query: 134 TYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
+ ++H + I + + + ++ L +
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213
Query: 194 VGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNY 253
+ ++L L L+ L N+ + F + + + +TL +++
Sbjct: 214 NMSVNALGHLQLSNIKL-----NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 254 FTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL 313
N+ L E + +LK L+ + + +
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 314 KFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373
+ + L+ + + + S+ L N+ ++ G L L
Sbjct: 329 ------AEMNIKMLSISDTPFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQT 381
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP-------SSLGNLTVLS------ 420
L L+ N L + +V + LE + + ++ VL+
Sbjct: 382 LILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 421 -------------RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
L + NR SIP + + + LQ LN++SN L ++P V
Sbjct: 441 TGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 74/420 (17%), Positives = 141/420 (33%), Gaps = 45/420 (10%)
Query: 48 LTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGI 107
++QD I+ S++ VG SN +++ ++ L +P + +
Sbjct: 1 MSQDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLT-HVPKDL--PPRTKAL 57
Query: 108 NLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIP 167
+L QN +I L +L+ L L++N +RS + F
Sbjct: 58 SLSQNSISELRMPDISFLSELRVLRLSHN--------------RIRSLDFHVFLF----- 98
Query: 168 DQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP--NELGQLSALG 225
LE + + + L NI +SL+ L L+ N+ +P E G L+ L
Sbjct: 99 -----NQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLT 149
Query: 226 FFTLYENFISDVGLT-LPNLKIFAGGVNYFTGSIPVSLSNA---SNLQVLDFAENGLTGT 281
F L + L + +L + ++ + I + + N VL + +
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209
Query: 282 IPENFGSLKDLVRLNFDQNELGSREIGDL-NFLKFLANCTSLEVLGLAQNGFGGEMPISI 340
+ S+ L L +L L FL L +L + L + + +
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269
Query: 341 ANLS-----THLRI--LTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLN 393
+L I LT+ + L +L + ++ S +
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329
Query: 394 KLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
++ L+ + + + + L +N F S+ K+LQ L L N L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 37/191 (19%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 325
+ L ++N ++ + L +L L N + S + F LE L
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN------QDLEYL 105
Query: 326 GLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385
++ N + N+S + +L L L N+ +
Sbjct: 106 DVSHN--------RLQNISCC--------------------PMASLRHLDLSFNDFD-VL 136
Query: 386 PE--VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKL 443
P G L KL L L+A KF + +L + LL +
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196
Query: 444 QVLNLSSNNLN 454
VL+L + +
Sbjct: 197 TVLHLVFHPNS 207
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 18/192 (9%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 325
S + G + T + L + + L + +++ L
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--------LTGIEYAHNIKDL 71
Query: 326 GLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383
+ + +S ++L L + + + + L +L+LL + +
Sbjct: 72 TINNIHAT-----NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 384 SVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKL 443
S+ I L K+ ++L+ N L L L L ++ + + + KL
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKL 183
Query: 444 QVLNLSSNNLNG 455
L S + G
Sbjct: 184 NQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-11
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 337 PISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396
I+ A + L +T+ + ++ GIE N+ L + + + P I L+ LE
Sbjct: 37 NITEAQM-NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLE 91
Query: 397 GLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456
L + + +L LT L+ L + + + SI + K+ ++LS N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 457 I 457
I
Sbjct: 152 I 152
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
I L+NL + + + L L L+++++ I T ++ ++ S +
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNL 210
S N I I L +L +L+ + + + + +F L L +
Sbjct: 144 SYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 5/140 (3%)
Query: 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
I N+ + + I L L+ L + ++ NLS T L +
Sbjct: 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNE 217
S + I ++ +L K+ I L + +I + L+ L + + +H
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG-- 176
Query: 218 LGQLSALGFFTLYENFISDV 237
+ L + I
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 45/221 (20%)
Query: 166 IPD-QLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224
IPD + + + T+N+T +SL + LA N+ + + +
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANIT------EAQMNSLTYITLANINVT-DLTG-IEYAHNI 68
Query: 225 GFFTLYENFISDVGL--TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI 282
T+ ++ L NL+ T +LS ++L +LD + + +I
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 283 PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIAN 342
+L + ++ N I D + L L+ L + +G + +
Sbjct: 129 LTKINTLPKVNSIDLSYNGA----ITD---IMPLKTLPELKSLNIQFDG--------VHD 173
Query: 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383
GIE+ L+ L + G
Sbjct: 174 YR-------------------GIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-09
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 20/173 (11%)
Query: 167 PDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGF 226
Q+ SLT + + + ++LTG + +++ L + + P + LS L
Sbjct: 40 EAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNP--ISGLSNLER 92
Query: 227 FTLYENFISDVGLT----LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI 282
+ ++ + L +L + + SI ++ + +D + NG I
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 283 PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
+L +L LN + + + + + L L GG+
Sbjct: 153 -MPLKTLPELKSLNIQFDGVHD--------YRGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 7/151 (4%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
+ + +LT I L I ++DL + + + +S + L
Sbjct: 39 TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
D L LT L ++ + S +I + + + L+ N I
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154
Query: 217 ELGQLSALGFFTLYENFISDV-GLT-LPNLK 245
L L L + + + D G+ P L
Sbjct: 155 -LKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 362 PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSR 421
+ + +L+ + L N++ I + ++ L +N + + + + L+ L R
Sbjct: 37 NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLER 92
Query: 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460
L + P+L L +L++S + + +I +
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG 140
L++ K + ++ LT+LT +++ + I +I L K+ ++L+YN
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 141 KIPTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLEIIRLGTSNLTG 188
I L EL+S + + D + KL + + + G
Sbjct: 151 DI-MPLKTLPELKSLNIQFD----GVHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 61/284 (21%), Positives = 97/284 (34%), Gaps = 20/284 (7%)
Query: 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG-LTL 241
+ N + P W S+ L A L+G + L + F + L+L
Sbjct: 14 SCNFSDPKPDW---SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70
Query: 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSL--KDLVRLNFDQ 299
L + A + + + S LQ L +TGT P DL LN
Sbjct: 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130
Query: 300 NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN---- 355
+R+ ++L L+VL +AQ + L L + N
Sbjct: 131 VSWATRDAWLAELQQWLK--PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELG 187
Query: 356 ---LMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF-MPS 411
L+ P+ L L+L SG + +L+GL+L+ N
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247
Query: 412 SLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
S + L+ L + + +P L KL VL+LS N L+
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-10
Identities = 48/277 (17%), Positives = 81/277 (29%), Gaps = 22/277 (7%)
Query: 145 NLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLL 204
S L+ + A+ + +SL +L + + V S LQ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 205 LARNNLHGSIPNELGQLSALGFFTLYENFISDVG----------LTLPNLKIFAGGVNYF 254
L + G+ P L + + L +S P LK+ + +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPEN----FGSLKDLVRLNFDQNELGSREIGDL 310
+ L LD ++N G L L + +
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---PSG 218
Query: 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVN 370
A L+ L L+ N + + L L + + + +P G+
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAK 275
Query: 371 LSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407
LS+L L N L P L ++ L L N F
Sbjct: 276 LSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 17/212 (8%)
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
+ S +L + + L RL + SR + L+ L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL--FGALRVL-GI 94
Query: 320 TSLEVLGLAQNGFGGEMPISIANLS-THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378
+ L+ L L G P + + L IL + N+ + L GL+
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKV 153
Query: 379 NNLSGSV-----PEVIGRLNKLEGLELNANKFSG-------FMPSSLGNLTVLSRLLMEE 426
+++ + E + L L+L+ N G P L VL+
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 427 NRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
G +LQ L+LS N+L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 43/203 (21%)
Query: 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
L +++ Q E++ L L+L+ N G+ + C
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC----------- 196
Query: 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQ 220
P + +L L + G +G A LQ L L+ N+L +
Sbjct: 197 ------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 221 -LSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT 279
S L L + +P L + L VLD + N L
Sbjct: 251 WPSQLNSLNLSFTGLK---------------------QVPKGLP--AKLSVLDLSYNRLD 287
Query: 280 GTIPENFGSLKDLVRLNFDQNEL 302
P L + L+ N
Sbjct: 288 -RNPS-PDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 43/279 (15%), Positives = 74/279 (26%), Gaps = 44/279 (15%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL---QKLQDLNLTYNY 137
+LK + I +L + + R +I R+ LQ+L L
Sbjct: 47 YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106
Query: 138 LSGKIPTNLSHCT--ELRSFEASANDFIGQIPD----QLISLTKLEIIRLGTSNLTGNIP 191
++G P L T +L + + Q L+++ + ++
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166
Query: 192 AWVGNFSSLQVLLLARNNLHGSIPNE----LGQLSALGFFTLYENFISDVGLTLPNLKIF 247
V F +L L L+ N G + L L +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----------- 215
Query: 248 AGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE-NFGSLKDLVRLNFDQNELGS-- 304
+G + LQ LD + N L + L LN L
Sbjct: 216 ------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 305 REIG-----------DLNFLKFLANCTSLEVLGLAQNGF 332
+ + L+ + L L N F
Sbjct: 270 KGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-12
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321
+ + + +T + L + ++ + +++ S ++ + +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--------VQGIQYLPN 69
Query: 322 LEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
+ L L N I L+ +L L + N + ++ +++L L L LE N
Sbjct: 70 VTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN 122
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
+S + L +LE L L NK + + L LT L L +E+N+ I P L
Sbjct: 123 GIS--DINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAG 176
Query: 440 CKKLQVLNLSSNNL 453
KLQ L LS N++
Sbjct: 177 LTKLQNLYLSKNHI 190
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-11
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 25/196 (12%)
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
V+ + +++ + + + ++ + L ++ +L + N+L +K LAN
Sbjct: 40 VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD--------IKPLANL 89
Query: 320 TSLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
+L L L +N +++L L+ L++ +N + +I G+ +L L L L
Sbjct: 90 KNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLG 142
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
N ++ V+ RL KL+ L L N+ S L LT L L + +N + L
Sbjct: 143 NNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DLRA-L 196
Query: 438 GNCKKLQVLNLSSNNL 453
K L VL L S
Sbjct: 197 AGLKNLDVLELFSQEC 212
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-08
Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 49/265 (18%)
Query: 144 TNLSHCTELRSFEASANDFIGQIP-DQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
+ E + ++L S+ ++ ++ G + ++
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTK 72
Query: 203 LLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-GLT-LPNLKIFAGGVNYFTGSIPV 260
L L N L I L L LG+ L EN + D+ L L LK + N + I
Sbjct: 73 LFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DIN- 128
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320
L + L+ L N +T L L L+ + N++ + LA T
Sbjct: 129 GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--------IVPLAGLT 178
Query: 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380
L+ L L++N I++L + L NL +L L
Sbjct: 179 KLQNLYLSKNH--------ISDLR-------------------ALAGLKNLDVLELFSQE 211
Query: 381 LSGSVPEVIGRLNKLEGLELNANKF 405
L ++
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 36/237 (15%)
Query: 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLS 139
L+ K + ++ L ++ I + + + I L + L L N L+
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81
Query: 140 GKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSS 199
I L++ L N + + L L KL+ + L + ++ +I + +
Sbjct: 82 -DI-KPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 135
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259
L+ L L N + I L +L+ L +L +N ISD+
Sbjct: 136 LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIV--------------------- 172
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
L+ + LQ L ++N ++ LK+L L E ++ I + L
Sbjct: 173 -PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-11
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 325
++ + LD N L+ + F L L L + N+L + G L +LE L
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL------KNLETL 90
Query: 326 GLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGS 384
+ N +PI + + +L L + N + ++P + ++L L+ L L N L S
Sbjct: 91 WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 385 VPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKK 442
+P+ V +L L+ L L N+ + LT L L ++ N+ + +P + + +K
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 443 LQVLNLSSN 451
L++L L N
Sbjct: 207 LKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 81 TVLKLESKQLVGSIPASI-GNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYL 138
+L L +L ++PA I L NL + + N+ +P + +L L +L L N L
Sbjct: 64 RLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL 121
Query: 139 SGKIPTNL-SHCTELRSFEASANDFIGQIPDQLI-SLTKLEIIRLGTSNLTGNIPAWV-G 195
+P + T+L N+ + +P + LT L+ +RL + L +P
Sbjct: 122 K-SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD 178
Query: 196 NFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232
+ L+ L L N L L L L EN
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEG 378
+ L L N + L T LR+L + N + +P GI + L NL L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94
Query: 379 NNLSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-- 435
N L ++P V +L L L L+ N+ P +LT L+ L + N + S+P
Sbjct: 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152
Query: 436 --SLGNCKKLQVLNLSSNNLNGTIPKEV 461
L + L+ L L +N L +P+
Sbjct: 153 FDKLTS---LKELRLYNNQLK-RVPEGA 176
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGL 398
+N+ + L + N + ++P L L LL L N L ++P + L LE L
Sbjct: 33 SNIPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90
Query: 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP----SLGNCKKLQVLNLSSNNL 453
+ NK L L+ L ++ N+ + S+PP SL L L+L N L
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNEL 145
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 60/261 (22%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132
CS +N + +V SK+L +IP++I + ++L N+ + RL KL+ L
Sbjct: 12 CSCNNNKNSV-DCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA 192
L N L +P I +L +L L + + L +P
Sbjct: 68 LNDNKLQ-TLPAG--------------------IFKELKNLETL---WVTDNKLQ-ALPI 102
Query: 193 WV-GNFSSLQVLLLARNNLHGSIPNEL-GQLSALGFFTLYENFISDVGLTLPNLKIFAGG 250
V +L L L RN L S+P + L+ L + +L N + +LP G
Sbjct: 103 GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ----SLPK------G 151
Query: 251 VNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGD 309
V F L ++L+ L N L +PE F L +L L D N+L G
Sbjct: 152 V--FDK-----L---TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 310 LNFLKFLANCTSLEVLGLAQN 330
+ L+ L++L L +N
Sbjct: 201 FDSLE------KLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 361 IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
IP I + L L+ N LS + RL KL L LN NK L L
Sbjct: 31 IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 421 RLLMEENRFEGSIPPSL-GNCKKLQVLNLSSNNL 453
L + +N+ + ++P + L L L N L
Sbjct: 89 TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL 121
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 5e-11
Identities = 51/334 (15%), Positives = 109/334 (32%), Gaps = 32/334 (9%)
Query: 135 YNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWV 194
+ Y + H + + + +++ L + W
Sbjct: 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR 288
Query: 195 GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254
+ + +L + N+ QL F ++ S L +
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLND--QLPQHTFRVIWTGSDSQKECVLLKDRPE------- 339
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD------QNELGSREIG 308
+ L + + T + S K+L L + L R +
Sbjct: 340 --CWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALD 396
Query: 309 DLNF----LKFLANCTSLEVLGLAQNGFGGEMPISIANLS----THLRILTMGYNLMHGN 360
L + L++ + +++ + A + ++ +R+L + + +
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455
Query: 361 IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
+ +E L+ ++ L L N L ++P + L LE L+ + N + NL L
Sbjct: 456 LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQ 511
Query: 421 RLLMEENRFEG-SIPPSLGNCKKLQVLNLSSNNL 453
LL+ NR + + L +C +L +LNL N+L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 3e-10
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 23/192 (11%)
Query: 1 MELITVPELQMDKLLQLALPFESLYSKNLESATIEA-DKLALLDFKNHLTQDPLQIMSSW 59
EL + LL + L +L E T++ L +D D L+
Sbjct: 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431
Query: 60 NDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP 119
+SV + V L L K L ++ + L +T ++L NR +P
Sbjct: 432 ENSVLKMEYADVRV---------LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALP 479
Query: 120 EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPD--QLISLTKLE 177
+ L+ L+ L + N L + +++ L+ N + Q L+S +L
Sbjct: 480 PALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536
Query: 178 IIRLGTSNLTGN 189
++ NL GN
Sbjct: 537 LL-----NLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 7e-09
Identities = 48/358 (13%), Positives = 100/358 (27%), Gaps = 64/358 (17%)
Query: 42 LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNL 101
+ ++ +++ W V + L + L +P +
Sbjct: 261 FSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRV 320
Query: 102 TNLTGINLFQ----NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
+ + + ++L L+ + + + L C EL+ E
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEP 379
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNE 217
+ I + +L L + + L A + + + ++
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFST---------------LKAVDPMRAAYLDD 424
Query: 218 LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277
L L L + L L + + + L + LD + N
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL---------TVLC-HLEQLLLVTHLDLSHNR 474
Query: 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP 337
L +P +L+ L L N L + + +AN L+ L L N
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALEN--------VDGVANLPRLQELLLCNN------- 518
Query: 338 ISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+ + + + L LL L+GN+L + RL ++
Sbjct: 519 -RLQQSAAIQPL----------------VSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 4e-10
Identities = 43/258 (16%), Positives = 76/258 (29%), Gaps = 33/258 (12%)
Query: 197 FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTG 256
+ L L L + +N + L + +F
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVF--------- 75
Query: 257 SIPVSLSNASNLQVLDFAE-NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
SN L + + N L PE F +L +L L + + + D++ +
Sbjct: 76 ------SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKI-- 125
Query: 316 LANCTSLEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNL-SL 373
+ +L + N + S LS IL + N + I N L L
Sbjct: 126 --HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182
Query: 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433
+ NNL +V + L+++ + L NL L + +
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KL 239
Query: 434 PPSLGNCKKLQVLNLSSN 451
P L L +L+
Sbjct: 240 PT-LEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 30/217 (13%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
IP L N L F L I + F DL ++ QN++ I F
Sbjct: 23 EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV-IEADVF--- 75
Query: 316 LANCTSLEVLGLAQNGFGGEMPISIANLS-------THLRILTMGYNLMHGNIPVGI-EN 367
+N L + + + ++ ++ +L+ L + + ++P +
Sbjct: 76 -SNLPKLHEIRIEKA-------NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126
Query: 368 LVNLSLLGLEGNNLSGSVPEVI--GRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
+ LL ++ N ++ G + L LN N S+ + L +
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 426 ENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGTIPKEV 461
N E +P +L++S ++ ++P
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG 221
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 39/251 (15%), Positives = 73/251 (29%), Gaps = 31/251 (12%)
Query: 59 WNDSVHFCNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHG 116
N C VT PS+ L+ +L + +L I + QN
Sbjct: 10 SNRVFL-CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 117 QIPEEI-GRLQKLQDLNLT-YNYLSGKIPTN-LSHCTELRSFEASANDFIGQIPDQL-IS 172
I ++ L KL ++ + N L I + L+ S I +PD I
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIH 126
Query: 173 LTKLEIIRLGTSNLTGNIP--AWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY 230
+ ++ + + I ++VG +L L +N + +
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 231 ENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLK 290
N + ++ AS +LD + + +LK
Sbjct: 187 NNNLEELP--------------------NDVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 291 DLVRLNFDQNE 301
L + +
Sbjct: 227 KLRARSTYNLK 237
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 18/211 (8%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
IP +L + + LD + N L +F S +L L+ + E+ + E G L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--- 75
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLG 375
+ L L L N + + + + L+ L + ++ +L L L
Sbjct: 76 ---SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130
Query: 376 LEGNNL-SGSVPEVIGRLNKLEGLELNANKFSGFMP---SSLGNLTVLS-RLLMEENRFE 430
+ N + S +PE L LE L+L++NK L + +L+ L + N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 431 GSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
I P +L+ L L +N L ++P +
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 55/241 (22%)
Query: 167 PDQLISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNEL-GQLSAL 224
S +L+++ L + I + S L L+L N + S+ LS+L
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102
Query: 225 GFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPE 284
E ++ +L + + L+ L+ A N + +
Sbjct: 103 QKLVAVETNLA----SLE----------------NFPIGHLKTLKELNVAHNLIQ-SFKL 141
Query: 285 N--FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIAN 342
F +L +L L+ N++ S DL L + +L L+
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL------HQMPLLNLS-------------- 181
Query: 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402
L + N M+ I G + L L L+ N L + RL L+ + L+
Sbjct: 182 -------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
Query: 403 N 403
N
Sbjct: 234 N 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 30/227 (13%)
Query: 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLS 139
L L L S + L ++L + I + L L L LT N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 140 GKIPTNL-SHCTELRSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWVGNF 197
+ S + L+ A + + + + I L L+ + + + + + F
Sbjct: 90 -SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFKLP-EYF 145
Query: 198 SS---LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254
S+ L+ L L+ N + SI + L NL + N
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTD--------------LRVLHQMPLLNLSLDLSL-NPM 189
Query: 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQN 300
I L+ L N L ++P+ F L L ++ N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 45/247 (18%)
Query: 189 NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFA 248
N+P S + L L+ N L L L I
Sbjct: 25 NLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------- 65
Query: 249 GGVNYFTGSIPVSL-SNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSRE 306
+I + S+L L N + ++ F L L +L + L
Sbjct: 66 --------TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL--AS 114
Query: 307 IGDLNFLKFLANCTSLEVLGLAQNGFGG-EMPISIANLSTHLRILTMGYNLMHGNIPVGI 365
+ + + +L+ L +A N ++P +NL T+L L + N + +I
Sbjct: 115 LENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQ-SIYCTD 168
Query: 366 -ENLVNLSL----LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420
L + L L L N ++ + + +L+ L L+ N+ LT L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227
Query: 421 RLLMEEN 427
++ + N
Sbjct: 228 KIWLHTN 234
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 4/134 (2%)
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEG 378
L L N F I LR + N + +I G E ++ + L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SL 437
N L ++ L L+ L L +N+ + S L+ + L + +N+ ++ P +
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149
Query: 438 GNCKKLQVLNLSSN 451
L LNL +N
Sbjct: 150 DTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 40/180 (22%)
Query: 66 CNWVGVTCS-------PSN--GRVTVLKLESKQLVGSIP-ASIGNLTNLTGINLFQNRFH 115
C V CS P + L+L + + L L IN N+
Sbjct: 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 116 GQIPEEI-GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLT 174
I E + ++ LT N L + + L
Sbjct: 71 -DIEEGAFEGASGVNEILLTSN--------------RLENVQHKMFK----------GLE 105
Query: 175 KLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYEN 232
L+ + L ++ +T + SS+++L L N + ++ L +L L N
Sbjct: 106 SLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-09
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEG 378
++ + L QN P + + LR + + N + + + L +L+ L L G
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SL 437
N ++ + L L+ L LNANK + + +L L+ L + +N+ + +I +
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148
Query: 438 GNCKKLQVLNLSSN 451
+ +Q ++L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
NL + + + N + IP G L + L N +S P+ L L L
Sbjct: 28 TNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGTIP 458
L NK + S L L LL+ N+ + + + L +L+L N L TI
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144
Query: 459 KEV 461
K
Sbjct: 145 KGT 147
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328
+ LD GL F L L LN D N+L + G + L T L LGLA
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLGLA 91
Query: 329 QNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPE 387
N +P+ + + T L L +G N + +P G+ + L L L L N L S+P
Sbjct: 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPA 148
Query: 388 -VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427
+L L+ L L+ N+ + L L + + N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLE 399
+ + L + + L L+ L L+ N L ++ V L +L L
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP----SLGNCKKLQVLNLSSNNL 453
L N+ + +LT L +L + N+ + S+P L L+ L L++N L
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQL 143
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI- 122
C + PS L L+S L A+ LT LT +NL N+ + +
Sbjct: 21 CQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVF 79
Query: 123 GRLQKLQDLNLTYNYLSGKIPTNL-SHCTELRSFEASANDFIGQIPDQLI-SLTKLEIIR 180
L +L L L N L+ +P + H T+L N + +P + LTKL+ +R
Sbjct: 80 DDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELR 137
Query: 181 LGTSNLTGNIPAWVGNF---SSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYEN 232
L T+ L +IPA G F ++LQ L L+ N L S+P+ +L L TL+ N
Sbjct: 138 LNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 17/196 (8%)
Query: 266 SNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEV 324
+ Q L E L TIP + F +L ++ R+ + + L F N + +
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----VTLQQLESHSF-YNLSKVTH 84
Query: 325 LGLAQNGFGGEMPISI-ANLSTHLRILTMGYNLMHGNIP--VGIENLVNLSLLGLEGNNL 381
+ + + L L+ L + + P + + +L + N
Sbjct: 85 IEIRNTRNLTYIDPDALKEL-PLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142
Query: 382 SGSVPE--VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL-- 437
S+P G N+ L+L N F+ + N T L + + +N++ I
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFG 201
Query: 438 GNCKKLQVLNLSSNNL 453
G +L++S ++
Sbjct: 202 GVYSGPSLLDVSQTSV 217
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 10/161 (6%)
Query: 263 SNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321
N S + ++ I + L L L L + DL +
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYST---DI 131
Query: 322 LEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380
+L + N + +P+ + L L + N ++ N L + L N
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190
Query: 381 LSGSVPEVI--GRLNKLEGLELNANKFSGFMPSSLGNLTVL 419
+ + G + L+++ + L +L L
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 14/208 (6%)
Query: 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNL-SHCTELRSFEASA 159
+ + L + L + + ++ + ++ ++ + +++ E
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 160 NDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPN 216
+ I + L L+ + + + L P V + +L + N SIP
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 217 EL--GQLSALGFFTLYENFISDVG---LTLPNLKIFAGGVNYFTGSIPV-SLSNA-SNLQ 269
G + LY N + V L N + I + S
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 270 VLDFAENGLTGTIPEN-FGSLKDLVRLN 296
+LD ++ +T +P LK+L+ N
Sbjct: 209 LLDVSQTSVT-ALPSKGLEHLKELIARN 235
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 28/243 (11%)
Query: 218 LGQLSALGFFTLYENFISDVGL--TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE 275
L+ L + ++D+ L ++ F G + S+ + +NL+ L +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72
Query: 276 NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335
N ++ + L L L+ ++N + +LN + L L L N
Sbjct: 73 NQIS-DL-SPLKDLTKLEELSVNRNR-----LKNLNGIPSA----CLSRLFLDNNEL--- 118
Query: 336 MPISIANLS--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLN 393
+L +L IL++ N + +I + L L +L L GN + + + RL
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI--TNTGGLTRLK 172
Query: 394 KLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
K+ ++L K L + + + + R+ P + N +
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELP 230
Query: 454 NGT 456
T
Sbjct: 231 VYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 24/172 (13%)
Query: 284 ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343
L + V+ N + + L + ++ + S+A +
Sbjct: 13 FPDPGLANAVKQNLGKQSVTD--------LVSQKELSGVQNFNGDNSNI-----QSLAGM 59
Query: 344 S--THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401
T+L+ L + +N + ++ +++L L L + N L I L L L+
Sbjct: 60 QFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLD 114
Query: 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
N+ SL +L L L + N+ + SI LG KL+VL+L N +
Sbjct: 115 NNELRDT--DSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 35/219 (15%)
Query: 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157
L N NL + L +Q+ N + + + + T L+
Sbjct: 15 DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNE 217
S N I + L LTKLE + + + L N+ + L L L N L +
Sbjct: 71 SHNQ-ISDLSP-LKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNEL--RDTDS 123
Query: 218 LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277
L L L ++ N + + V L S L+VLD N
Sbjct: 124 LIHLKNLEILSIRNNKLKSI----------------------VMLGFLSKLEVLDLHGNE 161
Query: 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
+T LK + ++ + + + L
Sbjct: 162 ITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 16/146 (10%)
Query: 310 LNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNLMHGNIPVGIEN 367
+N + + L + + + + ++ + + ++ G++
Sbjct: 9 INQVFPDPGLANAVKQNLGKQSVT-----DLVSQKELSGVQNFNGDNSNIQ-SLA-GMQF 61
Query: 368 LVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427
NL L L N +S + L KLE L +N N+ L+ L ++ N
Sbjct: 62 FTNLKELHLSHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNN 116
Query: 428 RFEGSIPPSLGNCKKLQVLNLSSNNL 453
SL + K L++L++ +N L
Sbjct: 117 EL--RDTDSLIHLKNLEILSIRNNKL 140
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 53/292 (18%)
Query: 120 EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179
L NL ++ + + +++F + + SL ++
Sbjct: 13 FPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNS--------NIQSLAGMQ-- 60
Query: 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV-G 238
F++L+ L L+ N + + L L+ L ++ N + ++ G
Sbjct: 61 ----------------FFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNG 102
Query: 239 LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298
+ L N SL + NL++L N L G L L L+
Sbjct: 103 IPSACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLH 158
Query: 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS--THLRILTMGYNL 356
NE+ + L + + L + L I +
Sbjct: 159 GNEITN--------TGGLTRLKKVNWIDLTGQ------KCVNEPVKYQPELYITNTVKDP 204
Query: 357 MHGNI-PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407
I P I N + + L EV + ++ + F G
Sbjct: 205 DGRWISPYYISNGGSYVDGCVL-WELPVYTDEVSYKFSEYINVGETEAIFDG 255
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 34/216 (15%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
S L+ + N + Q + L++L+L++N +S + + L T+L
Sbjct: 36 SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELS 91
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216
+ N + + I L + L + L + + +L++L + N L SI
Sbjct: 92 VNRNR-LKNLNG--IPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM 145
Query: 217 ELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAEN 276
LG LS L L+ N I++ G L+ + +D
Sbjct: 146 -LGFLSKLEVLDLHGNEITNTG----------------------GLTRLKKVNWIDLTGQ 182
Query: 277 GLTGTIPENFGSLKDLVRL-NFDQNELGSREIGDLN 311
+ L + + D + I +
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGG 218
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 58/289 (20%), Positives = 90/289 (31%), Gaps = 51/289 (17%)
Query: 197 FSSLQVLLLARNNLH----GSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVN 252
QV+ L L I + L AL L N + DVG+ G+
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-----HCVLQGL- 80
Query: 253 YFTGSIPVSLSNASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSREIG 308
+ + +Q L LTG + +L L L+ N LG +
Sbjct: 81 ---------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131
Query: 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL---STHLRILTMGYNLMHGNIPVGI 365
L L LE L L +A++ + LT+ N + G+
Sbjct: 132 LL-CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI---NEAGV 187
Query: 366 ENL--------VNLSLLGLEGNNLS----GSVPEVIGRLNKLEGLELNANKFSG-----F 408
L L L LE ++ + ++ L L L +NK
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247
Query: 409 MPSSLGNLTVLSRLLMEENRFE----GSIPPSLGNCKKLQVLNLSSNNL 453
P L + L L + E G + L + L+ L+L+ N L
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 71/422 (16%), Positives = 138/422 (32%), Gaps = 77/422 (18%)
Query: 74 SPSNGRVTVLKLESKQL----VGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL---- 125
P + V++L+ L I +++ L +NL N + +
Sbjct: 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83
Query: 126 -QKLQDLNLTYNYLSGK----IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180
K+Q L+L L+G + + L L+ S N +G QL+ L+
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLD--- 139
Query: 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLH----GSIPNELGQLSALGFFTLYENFISD 236
L+ L L +L + + L T+ N I++
Sbjct: 140 ---------------PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Query: 237 VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT----GTIPENFGSLKDL 292
G+ ++ G+ + L+ L G+T + S L
Sbjct: 185 AGV-----RVLCQGLK----------DSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229
Query: 293 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL---STHLRI 349
L N+LG + +L L + L L + + G + + + L+
Sbjct: 230 RELALGSNKLGDVGMAEL-CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 350 LTMGYNLMHGN-----IPVGIENLVNLSLLGLEGNNLSG----SVPEVIGRLNKLEGLEL 400
L++ N + +E L L ++ + + V+ + L L++
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 401 NANKF--SGFMPSSLG---NLTVLSRLLMEENRF--EG--SIPPSLGNCKKLQVLNLSSN 451
+ N+ +G G +VL L + + S+ +L L+ L+LS+N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Query: 452 NL 453
L
Sbjct: 409 CL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 68/390 (17%), Positives = 118/390 (30%), Gaps = 77/390 (19%)
Query: 102 TNLTGINLFQNRF-HGQIPEEIGRLQKLQDLNLTYNYLSGK----IPTNLSHCTELRSFE 156
++ +++ + E + LQ+ Q + L L+ I + L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH----G 212
+N+ +G + + L T + +Q L L L G
Sbjct: 63 LRSNE-LGDVGVHCVLQG------LQTPSCK------------IQKLSLQNCCLTGAGCG 103
Query: 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272
+ + L L L L +N + D GL ++ G+ L L+ L
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGL-----QLLCEGL----------LDPQCRLEKLQ 148
Query: 273 FAENGLTGTIPENFGSL----KDLVRLNFDQNELGSREIGDLNFLKFLANCT-SLEVLGL 327
L+ E S+ D L N++ G + L + LE L L
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA--GVRVLCQGLKDSPCQLEALKL 206
Query: 328 AQNGFGGEMPISIANL---STHLRILTMGYNLMHGNIPVGIENLV--------NLSLLGL 376
G + + + LR L +G N + G+ L L L +
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV---GMAELCPGLLHPSSRLRTLWI 263
Query: 377 EGNNLS----GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNL-----TVLSRLLMEEN 427
++ G + V+ L+ L L N+ L L L ++
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323
Query: 428 RFEG----SIPPSLGNCKKLQVLNLSSNNL 453
F L + L L +S+N L
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRL 353
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 36/203 (17%)
Query: 266 SNLQVLDFAENGLTGT-IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEV 324
++Q LD L+ E L+ + D L D++ L +L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE 60
Query: 325 LGLAQNGFGGEMPISIA----NLSTHLRILTMGYNLMH----GNIPVGIENLVNLSLLGL 376
L L N G + S ++ L++ + G + + L L L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 377 EGNNLSGSVPEVIGRL-----NKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431
N L + +++ +LE L+L S L ++
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--------------- 165
Query: 432 SIPPSLGNCKKLQVLNLSSNNLN 454
L + L +S+N++N
Sbjct: 166 -----LRAKPDFKELTVSNNDIN 183
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 41/205 (20%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDLVRLNFDQNELGSREIGDLNFLKF 315
++P SL S +LD + N L+ E L +L L N L
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------A 83
Query: 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLL 374
+L L L+ N +L T + + +L L +L
Sbjct: 84 FVPVPNLRYLDLSSN-----------HLHT---------------LDEFLFSDLQALEVL 117
Query: 375 GLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP---SSLGNLTVLSRLLMEENRFEG 431
L N++ + +L+ L L+ N+ S F L L L + N+ +
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 432 SIPPSLGNCKKLQV--LNLSSNNLN 454
L L L +N L
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDLNLTYNYLSGKIPTN-LSHCT 150
++P S+ + ++L N E RL L L L++N+L+ I +
Sbjct: 32 NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 151 ELRSFEASANDFIGQIPDQ-LISLTKLEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARN 208
LR + S+N + + + L LE++ L +++ + + + LQ L L++N
Sbjct: 89 NLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146
Query: 209 NLHGSIPNE----LGQLSALGFFTLYENFISDV 237
+ P E +L L L N + +
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 28/172 (16%)
Query: 176 LEIIRLGTSNLTGNIPAWV-GNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENF 233
++ L +NL+ W ++L LLL+ N+L+ I +E + L + L N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99
Query: 234 ISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN-FGSLKDL 292
+ TL S+ L+VL N + + N F + L
Sbjct: 100 LH----TLDEF----------------LFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQL 138
Query: 293 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS 344
+L QN++ + + L L +L L+ N + L
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLKKLPLTDLQKLP 187
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 325
+N Q+L +N +T P F SL +L L N+LG+ +G + L T L VL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL------TQLTVL 93
Query: 326 GLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385
L N +P ++ + HL+ L M N + +P GIE L +L+ L L+ N L S+
Sbjct: 94 DLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SI 150
Query: 386 PE-VIGRLNKLEGLELNAN 403
P RL+ L L N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEG 378
T+ ++L L N P +L +L+ L +G N + +PVG+ ++L L++L L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97
Query: 379 NNLSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
N L+ +P V RL L+ L + NK + +P + LT L+ L +++N+ + +
Sbjct: 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF 155
Query: 438 GNCKKLQVLNLSSN 451
L L N
Sbjct: 156 DRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLE 399
A + T+ +IL + N + P ++L+NL L L N L ++P V L +L L+
Sbjct: 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453
L N+ + + L L L M N+ +P + L L L N L
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 31/171 (18%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI- 122
C P+ +L L Q+ P +L NL + L N+ +P +
Sbjct: 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVF 84
Query: 123 GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182
L +L L+L N +L ++ D L L+ + +
Sbjct: 85 DSLTQLTVLDLGTN--------------QLTVLPSAVFD----------RLVHLKELFMC 120
Query: 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYEN 232
+ LT +P + + L L L +N L SIP+ +LS+L L+ N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323
+++ + + + L ++ L N+L I L L T+L
Sbjct: 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD--ISALKEL------TNLT 88
Query: 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLS 382
L L N +P + + T+L+ L + N + ++P G+ + L NL+ L L N L
Sbjct: 89 YLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 383 GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCK 441
V +L L L+L+ N+ LT L L + +N+ + S+P
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 205
Query: 442 KLQVLNLSSN 451
LQ + L N
Sbjct: 206 SLQYIWLHDN 215
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 40/237 (16%), Positives = 69/237 (29%), Gaps = 27/237 (11%)
Query: 233 FISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG-SLKD 291
+D L Y I S+ + L+ + +T E S K+
Sbjct: 78 HFADFNLVPDGWG------GYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131
Query: 292 LVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS---THLR 348
L A C +L+ L L ++ +++ T L
Sbjct: 132 FKVLVLS----SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187
Query: 349 ILTMGYNLMHGNI-PVGIENLV----NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA- 402
L + + + + +E LV NL L L + ++ R +LE L
Sbjct: 188 SLNI--SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245
Query: 403 -----NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ +L L L + +P C +L LNLS +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 26/103 (25%)
Query: 360 NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419
+ + NL+ L +E + L L L
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLE-----------------------LRDLRGLGEL 58
Query: 420 SRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSNNLNGTIPKEV 461
L + ++ + P + +L LNLS N L ++ +
Sbjct: 59 RNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKT 99
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 335 EMPISIANLSTHLRILTMGYNLMHGNIPVG-IENLVNLSLLGLEGNNLSGSVPEVIGRLN 393
+ + +L L + ++ + + L L L + + L P+
Sbjct: 22 DSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80
Query: 394 KLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429
+L L L+ N ++ L+ L L++ N
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 60/485 (12%), Positives = 140/485 (28%), Gaps = 128/485 (26%)
Query: 7 PELQMDKLLQLALPFESLYSKNLESAT-----IEADKLALLD-FKNHLTQDPLQIMSS-W 59
PE ++ L +L + ++ + ++ I + + L K+ ++ L ++ +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 60 NDSV--HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQ 117
N F ++C K L+ + + + + H
Sbjct: 255 NAKAWNAF----NLSC--------------KILLTTRFKQVTDFLS------AATTTHIS 290
Query: 118 IPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLE 177
+ L + +L YL + +L E + P + +S+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPR-EVLTTN-----P-RRLSI---- 332
Query: 178 IIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237
+ S + + W N+ + + L I + L L + +++
Sbjct: 333 ---IAES-IRDGLATW-DNWKHVNC-----DKLTTIIESSLNVLEPAEYRKMFDR----- 377
Query: 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR--- 294
L +F + IP L L ++ + + + L +
Sbjct: 378 ------LSVFPPSAH-----IPTIL-----LSLI---WFDVIKSDVMVV--VNKLHKYSL 416
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVL------------GLAQNGFGGEMPISIAN 342
+ E + I + +L+ + L + P +
Sbjct: 417 VEKQPKE-STISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI---PPYLDQ 471
Query: 343 -----LSTHLRILTMG--YNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395
+ HL+ + L ++ L + + S + LN L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFR-------MVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
+ L+ + ++ N RL+ F I +L K +L ++ +
Sbjct: 525 QQLK----FYKPYICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 456 TIPKE 460
I +E
Sbjct: 578 AIFEE 582
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 360 NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419
IP + L L+GN + VP+ + L ++L+ N+ S S N+T L
Sbjct: 28 GIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 420 SRLLMEENRFEGSIPP----SLGNCKKLQVLNLSSNNLNGTIPK 459
L++ NR IPP L K L++L+L N+++ +P+
Sbjct: 81 LTLILSYNRLR-CIPPRTFDGL---KSLRLLSLHGNDIS-VVPE 119
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 47/314 (14%), Positives = 97/314 (30%), Gaps = 41/314 (13%)
Query: 174 TKLEIIRL-GTSNLTGN-IPAWVGNFSSLQVLLLARNNLH-------GSIPNELGQLSAL 224
LE ++L S T + + + V + ++ LL+ ++ + L L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 225 GFFTLYENFISDVGLT-----LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT 279
F+ IS L +L G ++ + A+NL+
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNED 256
Query: 280 GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339
+PE + +L +L LG +G + L L E +
Sbjct: 257 IGMPEKYMNLVFPRKLCR----LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312
Query: 340 IANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLN------ 393
+ +L +L + + V + L L +E + + G ++
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372
Query: 394 ------KLEGLELNANKFSGF----MPSSLGNLTVLSRLLMEENR------FEGSIPPSL 437
+LE + + + + + + L NL +L++ + + L
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432
Query: 438 GNCKKLQVLNLSSN 451
CKKL+
Sbjct: 433 IGCKKLRRFAFYLR 446
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 40/266 (15%), Positives = 78/266 (29%), Gaps = 22/266 (8%)
Query: 197 FSSLQVLLLA---RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNY 253
F +L+ L L R + IP G + N + + + ++
Sbjct: 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131
Query: 254 FTGSIPVSLSNASNLQVLDFAE-NGLTGTIPENFGS-LKDLVRLNFDQNELGSREIGDLN 311
++ + A +L+ L + +G T + + + + L +++ E
Sbjct: 132 ------LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF--SEKDGKW 183
Query: 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANL---STHLRILTMGY--NLMHGNIPVGIE 366
+ + TSLEVL F P + + L + +G L
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP--SSLGNLTVLSRLLM 424
NL L + + KL L L+ + + L L+
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD--LL 301
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSS 450
+ C L+VL +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRN 327
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 36/290 (12%)
Query: 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTEL 152
+ NL G +L ++ + + +KL L L+Y + +P ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQI 295
Query: 153 RSFEASANDFIGQIPDQLIS-LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH 211
R + + LI LE++ + L+ L + R
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADE 355
Query: 212 GSIPNELGQLSALGFFTLYENF------------ISDVGLT-----LPNLKIFA----GG 250
+ +E G +S G L + I++ L L NL F
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
Query: 251 VNYFTG-----SIPVSLSNASNLQVLDFAEN--GLTGTIPENFGSL-KDLVRLNFDQNEL 302
T + L L+ F GLT G ++ + L
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML-----L 470
Query: 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTM 352
G D ++F C +L+ L + F + LR L +
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 47/394 (11%), Positives = 100/394 (25%), Gaps = 60/394 (15%)
Query: 123 GRLQKLQDLNLTY-NYLSGKIPTNL-SHCTELRSFEASANDF-------IGQIPDQLISL 173
R L+ L L + + ++ +HC ++++ + F + ++ SL
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194
Query: 174 TKLEIIRLGTSNLTGN-IPAWVGNFSSLQVLLLARNNL-----HGSIPNELGQLSALGFF 227
L + ++ + N SL + + + L +
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254
Query: 228 TLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE-NGLTGTIPENF 286
+ L P G +P+ A+ ++ LD T
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314
Query: 287 GSLKDLVRLN------------------------------FDQNELGSREIGDLNFLKFL 316
+L L E + +
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLS---THLRILTMGY------NLMHGNIPVGIEN 367
C LE + + + E SI R++ + + + +
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434
Query: 368 LVNLSLLGLEGN--NLSGSVPEVIGRLNK-LEGLELNANKFSGF-MPSSLGNLTVLSRLL 423
L L+ IG+ + + + L S + L +L
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494
Query: 424 MEENRF-EGSIPPSLGNCKKLQVLNLSSNNLNGT 456
M F E +I ++ L+ L + + T
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEG 378
L L N G + HL L + N + I E ++ L L
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87
Query: 379 NNLSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427
N + + + L++L+ L L N+ S MP S +L L+ L + N
Sbjct: 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 45/235 (19%)
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKD----------LVRLNFDQNELGSREIGDLN 311
+++ +L++ +F++ E +L+ L + N G
Sbjct: 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT--AQEP 113
Query: 312 FLKFLANCTSLEVLGLAQNGFGGE------------MPISIANLSTHLRILTMGYNLMHG 359
+ FL+ T LE L L NG G + A + LR + G N +
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-E 172
Query: 360 N-----IPVGIENLVNLSLLGLEGNNL-----SGSVPEVIGRLNKLEGLELNANKFSG-- 407
N ++ L + + N + + E + +L+ L+L N F+
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232
Query: 408 --FMPSSLGNLTVLSRLLMEENRF--EG--SIPPSLGNC--KKLQVLNLSSNNLN 454
+ +L + L L + + G ++ + LQ L L N +
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 364 GIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLL 423
N V L L G + + + L++ + ++ + N+ L L LL
Sbjct: 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 70
Query: 424 MEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ NR L L L++N+L
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGI-ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
+ + L + N + ++P G+ + L L+ L L N + V +L KL L
Sbjct: 24 TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP-SLGNCKKLQVLNLSSN 451
L+ NK LT L L ++ N+ + S+P LQ + L +N
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLE 399
+ L + N + + L +L+ L L GN L S+P V +L L L
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLN 82
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP----SLGNCKKLQVLNLSSNNL 453
L+ N+ LT L L + N+ + S+P L L+ L L N L
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ---LKDLRLYQNQL 136
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
++ L L N G + + +LE L + ++L L L +L +
Sbjct: 17 SDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+NR G + C L LNLS N +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425
+ L L + G + + LE L L S+L L L +L +
Sbjct: 24 AAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
ENR G + L LNLS N L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.61 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.53 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.5 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.47 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.43 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.43 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.4 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.23 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.2 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.17 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.12 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.94 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.93 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.88 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.75 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.66 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.64 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.63 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.32 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.07 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.6 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.49 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.54 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.35 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=474.22 Aligned_cols=424 Identities=30% Similarity=0.462 Sum_probs=283.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccc---cC------------
Q 037538 31 SATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGS---IP------------ 95 (461)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~---~~------------ 95 (461)
+++.++|++||++||+++. ||. .+++|..+++||.|.||+|+ .++|++|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 3457889999999999997 777 88999988899999999998 48999999999988776 33
Q ss_pred -----------ccccCCCCCCEEecCCCCCcccCch--hccCCCCCCEEeCCCCCCCCCCCcCC-CCCCCCCEEEccCCc
Q 037538 96 -----------ASIGNLTNLTGINLFQNRFHGQIPE--EIGRLQKLQDLNLTYNYLSGKIPTNL-SHCTELRSFEASAND 161 (461)
Q Consensus 96 -----------~~l~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~ 161 (461)
..+..+++|++|+|++|.+.|.+|. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 5678889999999999999988888 89999999999999999887777765 778888888888887
Q ss_pred CCCcCchh---h----------------------cCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCCh
Q 037538 162 FIGQIPDQ---L----------------------ISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 162 ~~~~~~~~---l----------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
+++..|.. + .++++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 77655544 3 3456666666777777665665 77778888888888888777777
Q ss_pred hhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCC-CCCCEEEcccccccccCCccCC------
Q 037538 217 ELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNA-SNLQVLDFAENGLTGTIPENFG------ 287 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~------ 287 (461)
.+..+++|++|++++|.+.... ..+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 7888888888888777663211 123444455555544444444444332 4444444444444444444444
Q ss_pred -------------------CCCCCCEEEcccCcCcccCCCCch-------------------hhhhhcC--CCCCCEEEc
Q 037538 288 -------------------SLKDLVRLNFDQNELGSREIGDLN-------------------FLKFLAN--CTSLEVLGL 327 (461)
Q Consensus 288 -------------------~l~~L~~L~L~~n~l~~~~~~~~~-------------------~~~~l~~--~~~L~~L~L 327 (461)
.+++|++|++++|++.+..+..+. .+..+.. +++|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 444444555544444432111100 0011111 334555555
Q ss_pred cCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc
Q 037538 328 AQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 328 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++
T Consensus 402 ~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 55555555555555544 56666666666665566666666666666666666666666666666666666666666666
Q ss_pred cCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 408 FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 408 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
.+|..+.++++|+.|++++|++++.+|.++..+++|+.|++++|++.|.+|.+
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 66666666666666666666666666666666666666666666666666643
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=442.11 Aligned_cols=412 Identities=23% Similarity=0.343 Sum_probs=344.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCcce---eeEEecCCCCcEEEEEcCCCCcccccCccccCCC
Q 037538 33 TIEADKLALLDFKNHLTQDPLQIM-------SSWNDSVHFCNW---VGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLT 102 (461)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~ 102 (461)
....|+.||.+++.++.++.|... .+|+.+.++|.| .||+|+.. ++|++|+|+++++.|.+|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 345799999999999876666533 389999999999 99999865 8999999999999999999999999
Q ss_pred CCCEEecCCCCC--------------------------------------------------------------------
Q 037538 103 NLTGINLFQNRF-------------------------------------------------------------------- 114 (461)
Q Consensus 103 ~L~~L~L~~n~~-------------------------------------------------------------------- 114 (461)
+|++|+|++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------cccCchhccCCCCCCEEeCCCCCCCCC-----------------CCcCCC--CCCCCCEEEccCCcCCCc
Q 037538 115 ----------HGQIPEEIGRLQKLQDLNLTYNYLSGK-----------------IPTNLS--HCTELRSFEASANDFIGQ 165 (461)
Q Consensus 115 ----------~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~~~ 165 (461)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 34 788899999999999999999975 999999 999999999999999999
Q ss_pred CchhhcCCCCCcEEEccCCC-Ccc-cCCccCCCC------CCCCEEECccCCCcccCCh--hhhcCCCCcEEecCCCCch
Q 037538 166 IPDQLISLTKLEIIRLGTSN-LTG-NIPAWVGNF------SSLQVLLLARNNLHGSIPN--ELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~ 235 (461)
+|+.++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 988 788887776 89999999999999 8888 8999999999999999887
Q ss_pred -hhc--cCCCCCcEEEccCccCccccChhhcCCCC-CCEEEcccccccccCCccCCCCC--CCCEEEcccCcCcccCCCC
Q 037538 236 -DVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPENFGSLK--DLVRLNFDQNELGSREIGD 309 (461)
Q Consensus 236 -~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~ 309 (461)
.+. ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|++.+.
T Consensus 344 g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~---- 417 (636)
T 4eco_A 344 GKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV---- 417 (636)
T ss_dssp EECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT----
T ss_pred cchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc----
Confidence 443 23567899999999988 78888888888 999999999988 6777776654 899999999988873
Q ss_pred chhhhhhc-------CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhc-C-------CCCCee
Q 037538 310 LNFLKFLA-------NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN-L-------VNLSLL 374 (461)
Q Consensus 310 ~~~~~~l~-------~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-l-------~~L~~L 374 (461)
.+..+. .+++|+.|++++|.++ .+|..+....++|++|++++|.++ .+|..+.. . ++|+.|
T Consensus 418 --~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 418 --DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp --TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred --chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 333444 6678888888888888 566665543238888888888887 45543322 2 278888
Q ss_pred ecccCcCccccchhhh--cCCCCCeeccccccCcccCChhhhcCccCCeeec------ccccccccCCccCCCCCCCCEE
Q 037538 375 GLEGNNLSGSVPEVIG--RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM------EENRFEGSIPPSLGNCKKLQVL 446 (461)
Q Consensus 375 ~Ls~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~~L~~L 446 (461)
++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.++++|+.|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 88888888 6777776 78888888888888886 7888888888888888 4577788888888888888888
Q ss_pred EccCCCCcccCCCC
Q 037538 447 NLSSNNLNGTIPKE 460 (461)
Q Consensus 447 ~ls~N~l~~~ip~~ 460 (461)
++++|++ +.||..
T Consensus 572 ~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 572 QIGSNDI-RKVNEK 584 (636)
T ss_dssp ECCSSCC-CBCCSC
T ss_pred ECCCCcC-CccCHh
Confidence 8888888 688865
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=435.60 Aligned_cols=414 Identities=23% Similarity=0.332 Sum_probs=343.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--cce------------eeEEecCCCCcEEEEEcCCCCc
Q 037538 30 ESATIEADKLALLDFKNHLTQDPLQIMSSWNDSV-----HF--CNW------------VGVTCSPSNGRVTVLKLESKQL 90 (461)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~l 90 (461)
.+++..+|+.||++||+++. +| +|.... ++ |.| .||+|+. .++|+.|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34456789999999999996 44 565433 45 999 9999986 48999999999999
Q ss_pred ccccCccccCCCCCCEEec-CCCCCccc----------------------------------------------------
Q 037538 91 VGSIPASIGNLTNLTGINL-FQNRFHGQ---------------------------------------------------- 117 (461)
Q Consensus 91 ~~~~~~~l~~l~~L~~L~L-~~n~~~~~---------------------------------------------------- 117 (461)
.|.+|++++++++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77654433
Q ss_pred ------------------------CchhccCCCCCCEEeCCCCCCCC-----------------CCCcCCC--CCCCCCE
Q 037538 118 ------------------------IPEEIGRLQKLQDLNLTYNYLSG-----------------KIPTNLS--HCTELRS 154 (461)
Q Consensus 118 ------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~ 154 (461)
+|..|.++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999997 3899988 9999999
Q ss_pred EEccCCcCCCcCchhhcCCCCCcEEEccCCC-Ccc-cCCccCCC-------CCCCCEEECccCCCcccCCh--hhhcCCC
Q 037538 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSN-LTG-NIPAWVGN-------FSSLQVLLLARNNLHGSIPN--ELGQLSA 223 (461)
Q Consensus 155 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~-------l~~L~~L~l~~n~~~~~~~~--~l~~l~~ 223 (461)
|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++ +++|++|++++|.++ .+|. .++.+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 77875554 459999999999999 8888 8999999
Q ss_pred CcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCC-CCEEEcccccccccCCccCCCCCC--CCEEEcc
Q 037538 224 LGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPENFGSLKD--LVRLNFD 298 (461)
Q Consensus 224 L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~ 298 (461)
|+.|++++|.+..+. ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|+++
T Consensus 575 L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp CCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred CCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 999999999987554 44678999999999999 88988999999 999999999998 77888777654 9999999
Q ss_pred cCcCcccCCCCchhhhhhc--CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhc--------C
Q 037538 299 QNELGSREIGDLNFLKFLA--NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN--------L 368 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--------l 368 (461)
+|++.+..+. ++..+. .+++|+.|++++|.++ .+|..+....++|+.|++++|.++ .+|..+.. +
T Consensus 653 ~N~l~g~ip~---l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 653 YNKIGSEGRN---ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp SSCTTTTSSS---CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred CCcCCCcccc---chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 9999874221 111222 3457888888888888 677766533348888888888887 55554433 2
Q ss_pred CCCCeeecccCcCccccchhhh--cCCCCCeeccccccCcccCChhhhcCccCCeeeccc------ccccccCCccCCCC
Q 037538 369 VNLSLLGLEGNNLSGSVPEVIG--RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEE------NRFEGSIPPSLGNC 440 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~p~~l~~l 440 (461)
++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|..+.++
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 38888888888888 7777776 88888888888888886 788888888888888865 77888888888888
Q ss_pred CCCCEEEccCCCCcccCCCCC
Q 037538 441 KKLQVLNLSSNNLNGTIPKEV 461 (461)
Q Consensus 441 ~~L~~L~ls~N~l~~~ip~~~ 461 (461)
++|+.|++++|++ +.||..+
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCC
T ss_pred CCCCEEECCCCCC-CccCHhh
Confidence 8888888888888 7888753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=433.10 Aligned_cols=376 Identities=31% Similarity=0.496 Sum_probs=317.6
Q ss_pred CcEEEEEcCCCCcccccCccccCC-CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcC-CCCCCCCCEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNL-TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN-LSHCTELRSF 155 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L 155 (461)
..+++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 456667777777766777666654 77777777777777777777777777888888777777677765 7777788888
Q ss_pred EccCCcCCCcCchhhcCCC-CCcEEEccCCCCcccCCccCCC--CCCCCEEECccCCCcccCChhhhcCCCCcEEecCCC
Q 037538 156 EASANDFIGQIPDQLISLT-KLEIIRLGTSNLTGNIPAWVGN--FSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232 (461)
Q Consensus 156 ~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 232 (461)
++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8888777777777777776 7888888888777777777666 678888888888888888888888999999999888
Q ss_pred Cchh----hccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCC
Q 037538 233 FISD----VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 233 ~l~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 308 (461)
.+.. ....+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---- 504 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG---- 504 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC----
Confidence 7742 33457889999999999988888888889999999999999988888888899999999999998887
Q ss_pred CchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh----------------------
Q 037538 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE---------------------- 366 (461)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---------------------- 366 (461)
.++.++..+++|++|++++|++++.+|..+..++ +|++|++++|.++|.+|..+.
T Consensus 505 --~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 505 --EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred --cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 5677788889999999999999988998888886 899999999988877776543
Q ss_pred ------------------------------------------------cCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 367 ------------------------------------------------NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 367 ------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
.+++|+.||+++|+++|.+|..++.+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 34678999999999999999999999999999
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
+|++|+++|.+|..++++++|+.||+++|+++|.+|..+.++++|+.||+++|+++|.||+.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999963
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.17 Aligned_cols=381 Identities=19% Similarity=0.144 Sum_probs=275.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..+++|++++|.+++..+.++.++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57999999999999888889999999999999999999888999999999999999999999888999999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCc--EEecCCCCch
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG--FFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~l~ 235 (461)
++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999877677899999999999999999874434455589999999999999877777788888877 6777766552
Q ss_pred hh------------------------------------------------------------------------------
Q 037538 236 DV------------------------------------------------------------------------------ 237 (461)
Q Consensus 236 ~~------------------------------------------------------------------------------ 237 (461)
.+
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 21
Q ss_pred -ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCC-c-----
Q 037538 238 -GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD-L----- 310 (461)
Q Consensus 238 -~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~----- 310 (461)
...+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..... +
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 112344555555555554 34445555555555555555555444444444444444444444433211000 0
Q ss_pred -------------h--hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCee
Q 037538 311 -------------N--FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLL 374 (461)
Q Consensus 311 -------------~--~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L 374 (461)
. .+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+. .+..+++|+.|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 0 023455566666666666666655555555554 677777777776655443 36667777777
Q ss_pred ecccCcCccccchhhhcCCCCCeeccccccCccc---CChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCC
Q 037538 375 GLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF---MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451 (461)
Q Consensus 375 ~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 451 (461)
++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 7777777776777777778888888888887752 2356777888888888888888777888888888888888888
Q ss_pred CCcccCCCC
Q 037538 452 NLNGTIPKE 460 (461)
Q Consensus 452 ~l~~~ip~~ 460 (461)
++++.+|+.
T Consensus 511 ~l~~~~~~~ 519 (606)
T 3t6q_A 511 RLTSSSIEA 519 (606)
T ss_dssp CCCGGGGGG
T ss_pred ccCcCChhH
Confidence 888766643
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.15 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=127.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999998888888999999999999999999878888999999999999999999777999999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQL 221 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 221 (461)
++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 9999987777889999999999999999886 578889999999999999998887666544433
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=376.99 Aligned_cols=346 Identities=20% Similarity=0.296 Sum_probs=312.8
Q ss_pred cCccccCCCCCCEEecCCCCCccc-----------------Cchhcc--CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCE
Q 037538 94 IPASIGNLTNLTGINLFQNRFHGQ-----------------IPEEIG--RLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154 (461)
Q Consensus 94 ~~~~l~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 154 (461)
+|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788899999999999999999986 999999 9999999999999999999999999999999
Q ss_pred EEccCCc-CCC-cCchhhcCC------CCCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCChhhhcCCCC
Q 037538 155 FEASAND-FIG-QIPDQLISL------TKLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224 (461)
Q Consensus 155 L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 224 (461)
|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .+.++++|++|++++|.+.|.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 888 899998887 99999999999999 8998 89999999999999999999999 99999999
Q ss_pred cEEecCCCCchhhc---cCCCC-CcEEEccCccCccccChhhcCCC--CCCEEEcccccccccCCccCC-------CCCC
Q 037538 225 GFFTLYENFISDVG---LTLPN-LKIFAGGVNYFTGSIPVSLSNAS--NLQVLDFAENGLTGTIPENFG-------SLKD 291 (461)
Q Consensus 225 ~~L~l~~n~l~~~~---~~l~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~ 291 (461)
++|++++|.+..+. ..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+++..|..+. .+++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 99999999887553 34677 999999999999 7888877765 899999999999999999888 8889
Q ss_pred CCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc-------cccEEEccCCcCcccCchh
Q 037538 292 LVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST-------HLRILTMGYNLMHGNIPVG 364 (461)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~ 364 (461)
|++|++++|+++..+ ...+..+++|+.|++++|.++ .+|........ +|++|++++|.++ .+|..
T Consensus 435 L~~L~Ls~N~l~~lp------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 435 VSSINLSNNQISKFP------KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp EEEEECCSSCCCSCC------THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCEEECcCCccCcCC------HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 999999999998522 234567899999999999998 77765544322 8999999999999 68888
Q ss_pred hh--cCCCCCeeecccCcCccccchhhhcCCCCCeecc------ccccCcccCChhhhcCccCCeeecccccccccCCcc
Q 037538 365 IE--NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL------NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436 (461)
Q Consensus 365 ~~--~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (461)
+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 87 99999999999999997 8999999999999999 56788899999999999999999999999 688988
Q ss_pred CCCCCCCCEEEccCCCCc
Q 037538 437 LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 437 l~~l~~L~~L~ls~N~l~ 454 (461)
+. ++|+.|++++|++.
T Consensus 585 ~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 585 IT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CC--TTCCEEECCSCTTC
T ss_pred Hh--CcCCEEECcCCCCc
Confidence 76 89999999999875
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=366.66 Aligned_cols=373 Identities=23% Similarity=0.248 Sum_probs=253.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..|.++.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 45666666666666666666666666666666666666555666666666666666666665443445555555555555
Q ss_pred cCCcCCC------------------------cCchhhcCCCCCc--EEEccCCCCcccCCcc------------------
Q 037538 158 SANDFIG------------------------QIPDQLISLTKLE--IIRLGTSNLTGNIPAW------------------ 193 (461)
Q Consensus 158 ~~n~~~~------------------------~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~------------------ 193 (461)
++|.+.+ ..+..++.+++|+ .|++++|.+.+..|..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 5555544 3344444444444 4444444443322211
Q ss_pred ---------------------------------------------------------CCCCCCCCEEECccCCCcccCCh
Q 037538 194 ---------------------------------------------------------VGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 194 ---------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
+.++++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 233344444444444444 3444
Q ss_pred hhhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccCh-hhcCCCCCCEEEcccccccccC--CccCCCC
Q 037538 217 ELGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPV-SLSNASNLQVLDFAENGLTGTI--PENFGSL 289 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l 289 (461)
.+..+++|++|++++|.+... ...+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 444445555555555444322 12345555555555555544432 2555566666666666555443 4556666
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH-HHhccccccEEEccCCcCcccCchhhhcC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS-IANLSTHLRILTMGYNLMHGNIPVGIENL 368 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 368 (461)
++|++|++++|++.+ ..+..+..+++|+.|++++|.+++..+.. +..++ +|++|++++|.+.+..|..+..+
T Consensus 376 ~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLS------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTCCEEECCSCSCEE------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTC
T ss_pred CCCCEEECCCCcCCc------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECCCCccCCcCHHHHhCC
Confidence 666666666666654 34566788999999999999998776554 55665 99999999999999889999999
Q ss_pred CCCCeeecccCcCccc---cchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCE
Q 037538 369 VNLSLLGLEGNNLSGS---VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQV 445 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 445 (461)
++|++|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+.+++.| .
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 9999999999999873 33568899999999999999999999999999999999999999999999999999999 9
Q ss_pred EEccCCCCcccCCC
Q 037538 446 LNLSSNNLNGTIPK 459 (461)
Q Consensus 446 L~ls~N~l~~~ip~ 459 (461)
|++++|++++..|.
T Consensus 528 L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 528 LNLASNHISIILPS 541 (606)
T ss_dssp EECCSSCCCCCCGG
T ss_pred EECcCCcccccCHh
Confidence 99999999976664
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=354.54 Aligned_cols=369 Identities=18% Similarity=0.184 Sum_probs=253.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccC-chhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666655666666666666666666665433 44566666666666666666655566666666666666
Q ss_pred ccCCcCCCcCchh--hcCCCCCcEEEccCCCCcccCCcc-CCCCCCCCEEECccCCCcccCChhhhcC--CCCcEEecCC
Q 037538 157 ASANDFIGQIPDQ--LISLTKLEIIRLGTSNLTGNIPAW-VGNFSSLQVLLLARNNLHGSIPNELGQL--SALGFFTLYE 231 (461)
Q Consensus 157 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 231 (461)
+++|.+++..+.. +.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 6666666544433 666666666666666666555544 5666666666666666666555555544 4555555555
Q ss_pred CCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCC---CCCCCEEEcccCcCcccCCC
Q 037538 232 NFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGS---LKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 232 n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~ 308 (461)
|.+..+.... +.......+..+++|++|++++|.+++..|..+.. .++|+.|++++|...+....
T Consensus 190 n~l~~~~~~~------------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 190 ITLQDMNEYW------------LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp CBCTTCSTTC------------TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred Ccccccchhh------------ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 5554322100 00000011223455666666666555554444322 25566666665544332111
Q ss_pred Cch----hhhhh--cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc
Q 037538 309 DLN----FLKFL--ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS 382 (461)
Q Consensus 309 ~~~----~~~~l--~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 382 (461)
... ....+ ...++|+.|++++|.+++..|..+..++ +|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 000 00111 1347899999999999988888888876 9999999999999888889999999999999999999
Q ss_pred cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 383 GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 383 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88888999999999999999999988899999999999999999999976667789999999999999999999883
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=361.36 Aligned_cols=378 Identities=22% Similarity=0.224 Sum_probs=254.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999998877778999999999999999999888889999999999999999998554557999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhh--cCCCCcEEecCCCCch
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG--QLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~ 235 (461)
++|.+.+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999877778899999999999999999988888889999999999999999876666554 4578888888887664
Q ss_pred hhcc-------------------------------CCCCCcEEEccCccCccccChhhcCCCC--CCEEEcccccccccC
Q 037538 236 DVGL-------------------------------TLPNLKIFAGGVNYFTGSIPVSLSNASN--LQVLDFAENGLTGTI 282 (461)
Q Consensus 236 ~~~~-------------------------------~l~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~ 282 (461)
.+.. ..++|+.|++++|.+++..|..+..++. |++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 3211 1134455555555555444444444322 555555555554444
Q ss_pred CccCCCCCCCCEEEcccCcCcccCCCCc-----------------------hhh----hhhcCCCCCCEEEccCCcCccc
Q 037538 283 PENFGSLKDLVRLNFDQNELGSREIGDL-----------------------NFL----KFLANCTSLEVLGLAQNGFGGE 335 (461)
Q Consensus 283 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~----~~l~~~~~L~~L~L~~n~~~~~ 335 (461)
+..+..+++|++|++++|++.+.....+ .++ ..+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 4444555555555555544443221100 001 1344556666666666665544
Q ss_pred cchHHHhcc---------------------------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-h
Q 037538 336 MPISIANLS---------------------------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-E 387 (461)
Q Consensus 336 ~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~ 387 (461)
.+..+..++ ++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 443333322 134455555555665566666677777777777777765544 4
Q ss_pred hhhcCCCCCeeccccccCcc--------------------------cCChhhhcCccCCeeecccccccccCCccCCCCC
Q 037538 388 VIGRLNKLEGLELNANKFSG--------------------------FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 388 ~l~~~~~L~~L~L~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
.+.++++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 56666666666666666543 3455555666666666666666655555566666
Q ss_pred CCCEEEccCCCCcc
Q 037538 442 KLQVLNLSSNNLNG 455 (461)
Q Consensus 442 ~L~~L~ls~N~l~~ 455 (461)
+|+.|++++|++.+
T Consensus 505 ~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 505 KLEILDLQHNNLAR 518 (680)
T ss_dssp TCCEEECCSSCCGG
T ss_pred ccCEEeCCCCCccc
Confidence 66666666666653
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=358.92 Aligned_cols=373 Identities=18% Similarity=0.174 Sum_probs=269.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+..+.++.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46778888888887766777788888888888888887666677788888888888888877666677888888888888
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC----cEEecCCC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL----GFFTLYEN 232 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n 232 (461)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+.+| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8887775544457778888888888887775 467777778888888888877766555555555444 44555444
Q ss_pred Cchhh---------------------------------------------------------------------------
Q 037538 233 FISDV--------------------------------------------------------------------------- 237 (461)
Q Consensus 233 ~l~~~--------------------------------------------------------------------------- 237 (461)
.+..+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 33111
Q ss_pred ----------ccCCCCCcEEEccCccCccccChhh------------------------------------------cCC
Q 037538 238 ----------GLTLPNLKIFAGGVNYFTGSIPVSL------------------------------------------SNA 265 (461)
Q Consensus 238 ----------~~~l~~L~~L~l~~n~~~~~~~~~l------------------------------------------~~~ 265 (461)
...+++|+.+++++|.+++ +|..+ ..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 0112344444444444331 22222 234
Q ss_pred CCCCEEEcccccccccC--CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccc-hHHHh
Q 037538 266 SNLQVLDFAENGLTGTI--PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMP-ISIAN 342 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~ 342 (461)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------EEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------ccccccccCCCCEEEccCCccccccchhhhhc
Confidence 45555555555544332 3444555556666666555543 22236677888888888888776555 34555
Q ss_pred ccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCe
Q 037538 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSR 421 (461)
Q Consensus 343 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 421 (461)
++ +|++|++++|.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus 420 l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 54 8999999999998888888889999999999999987 578888999999999999999999888999999999999
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
|++++|++++..|..+.++++|+.|++++|++.+..|.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999988788899999999999999999998874
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=360.08 Aligned_cols=366 Identities=20% Similarity=0.219 Sum_probs=249.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+.++.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888889999999999999999999888888999999999999999999776777999999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999886 467789999999999999998554555 57889999999999999999888888777666666666555543
Q ss_pred hhc----cCCCCCcEEEccCccCccc------------------------------------------------------
Q 037538 236 DVG----LTLPNLKIFAGGVNYFTGS------------------------------------------------------ 257 (461)
Q Consensus 236 ~~~----~~l~~L~~L~l~~n~~~~~------------------------------------------------------ 257 (461)
.+. ..+++|+.|++++|.+++.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 221 1244455555544444331
Q ss_pred -----------------------------------------------------------cChhh-cCCCCCCEEEccccc
Q 037538 258 -----------------------------------------------------------IPVSL-SNASNLQVLDFAENG 277 (461)
Q Consensus 258 -----------------------------------------------------------~~~~l-~~~~~L~~L~l~~n~ 277 (461)
+|..+ ..+++|++|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 12111 223444444444444
Q ss_pred ccccCC---ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 278 LTGTIP---ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 278 l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
+++..| ..++.+++|++|++++|++++.. .....+..+++|++|++++|+++ .+|..+..++ +|++|++++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-~L~~L~Ls~ 419 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ----KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE-KMRFLNLSS 419 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH----HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-TCCEEECTT
T ss_pred cccccccchhhhhccccCcEEEccCCcccccc----cchhhhhcCCCCCEEECCCCCCc-cCChhhcccc-cccEEECCC
Confidence 443332 12334444444444444443210 01122444444445555444444 3343333332 445555555
Q ss_pred CcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCC
Q 037538 355 NLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP 434 (461)
Q Consensus 355 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 434 (461)
|.+++ +|..+ .++|+.|++++|++++. ...+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus 420 N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 420 TGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred CCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 54442 22211 13455555555555532 246788999999999998 6775 4678999999999999998888
Q ss_pred ccCCCCCCCCEEEccCCCCcccCC
Q 037538 435 PSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
..+..+++|+.|++++|++.+..|
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCcccCEEEecCCCccCCCc
Confidence 889999999999999999988765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=356.13 Aligned_cols=371 Identities=19% Similarity=0.182 Sum_probs=280.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..|.++.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 67999999999998888888999999999999999998777889999999999999999998766678999999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCC---------------------------CCCEEECccCC
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS---------------------------SLQVLLLARNN 209 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------------------------~L~~L~l~~n~ 209 (461)
++|.+.+ .+|..++++++|++|++++|.+++..+..+..++ +|++|++++|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 9999876 6788999999999999999888765444332222 22222222222
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 037538 210 LHG----------------------------------------------------------------------------- 212 (461)
Q Consensus 210 ~~~----------------------------------------------------------------------------- 212 (461)
+.+
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence 110
Q ss_pred ---cCChhhhcCCCCcEEecCCCCchhhc-----------------------cCCCCCcEEEccCccCccc--cChhhcC
Q 037538 213 ---SIPNELGQLSALGFFTLYENFISDVG-----------------------LTLPNLKIFAGGVNYFTGS--IPVSLSN 264 (461)
Q Consensus 213 ---~~~~~l~~l~~L~~L~l~~n~l~~~~-----------------------~~l~~L~~L~l~~n~~~~~--~~~~l~~ 264 (461)
.+| .+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++. +|..+..
T Consensus 296 ~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 296 SIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred cchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 111 2333344555555555442221 2456777777777777655 3667777
Q ss_pred CCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhh-hhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 265 ASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFL-KFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
+++|++|++++|.+++ +|..+..+++|+.|++++|++.+. .+ ..+..+++|+.|++++|.+++..|..+..+
T Consensus 375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV------TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST------TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc------cChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 7888888888887764 456777788888888888877763 22 456778888888888888887777777777
Q ss_pred cccccEEEccCCcCcc-cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCee
Q 037538 344 STHLRILTMGYNLMHG-NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRL 422 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (461)
+ +|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 448 ~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 448 T-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp T-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred C-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 6 88888888888887 367778888888888888888887778888888888888888888888778888888888888
Q ss_pred ecccccccccCCccCCCCC-CCCEEEccCCCCcccCC
Q 037538 423 LMEENRFEGSIPPSLGNCK-KLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 423 ~l~~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~ip 458 (461)
++++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 88888888 6777777776 58888888888876544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=365.11 Aligned_cols=346 Identities=19% Similarity=0.240 Sum_probs=305.5
Q ss_pred cCccccCCCCCCEEecCCCCCcc-----------------cCchhcc--CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCE
Q 037538 94 IPASIGNLTNLTGINLFQNRFHG-----------------QIPEEIG--RLQKLQDLNLTYNYLSGKIPTNLSHCTELRS 154 (461)
Q Consensus 94 ~~~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 154 (461)
+|..+.++++|++|+|++|.+++ .+|..++ .+++|++|++++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3899887 9999999999999999999999999999999
Q ss_pred EEccCCc-CCC-cCchhhcCCC-------CCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCChhhhcCCC
Q 037538 155 FEASAND-FIG-QIPDQLISLT-------KLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPNELGQLSA 223 (461)
Q Consensus 155 L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 223 (461)
|++++|+ +++ .+|..+++++ +|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 888 7888777665 9999999999999 8998 8999999999999999999 888 8999999
Q ss_pred CcEEecCCCCchhhc---cCCCC-CcEEEccCccCccccChhhcCCCC--CCEEEcccccccccCCccC---C--CCCCC
Q 037538 224 LGFFTLYENFISDVG---LTLPN-LKIFAGGVNYFTGSIPVSLSNASN--LQVLDFAENGLTGTIPENF---G--SLKDL 292 (461)
Q Consensus 224 L~~L~l~~n~l~~~~---~~l~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L 292 (461)
|+.|++++|.+..+. ..+++ |+.|++++|.++ .+|..+...+. |++|++++|.+.+.+|... . .+++|
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999999987554 34567 999999999998 78888777654 9999999999998766432 2 34589
Q ss_pred CEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc-------cccEEEccCCcCcccCchhh
Q 037538 293 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST-------HLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~~ 365 (461)
+.|++++|+++.. -...+..+++|+.|++++|.++ .+|..+..... +|++|++++|.++ .+|..+
T Consensus 676 ~~L~Ls~N~L~~l------p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 676 STVTLSYNEIQKF------PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp EEEECCSSCCCSC------CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred CEEEccCCcCCcc------CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 9999999999842 1233458899999999999998 77776554322 8999999999999 688888
Q ss_pred h--cCCCCCeeecccCcCccccchhhhcCCCCCeecccc------ccCcccCChhhhcCccCCeeecccccccccCCccC
Q 037538 366 E--NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA------NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437 (461)
Q Consensus 366 ~--~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (461)
. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 7 89999999999999997 798999999999999976 788899999999999999999999999 6899887
Q ss_pred CCCCCCCEEEccCCCCcc
Q 037538 438 GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 438 ~~l~~L~~L~ls~N~l~~ 455 (461)
. ++|+.||+++|++..
T Consensus 826 ~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 826 T--PQLYILDIADNPNIS 841 (876)
T ss_dssp C--SSSCEEECCSCTTCE
T ss_pred c--CCCCEEECCCCCCCc
Confidence 6 699999999999863
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=366.21 Aligned_cols=380 Identities=19% Similarity=0.166 Sum_probs=259.6
Q ss_pred cceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccC-chhccCCCCCCEEeCCCCCCCCCCCc
Q 037538 66 CNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLSGKIPT 144 (461)
Q Consensus 66 c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~ 144 (461)
|.|..|.+ ...++++|+|++|.+.+..+..+.++++|++|++++|...+.+ |.+|..+++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34666655 2368999999999999888889999999999999999666555 77899999999999999999988899
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchh--hcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhhcC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQ--LISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELGQL 221 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 221 (461)
.|.++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998866665 8899999999999999986654 568899999999999999887777666554
Q ss_pred --CCC------------------------------cEEecCCCCchhh-----c--------------------------
Q 037538 222 --SAL------------------------------GFFTLYENFISDV-----G-------------------------- 238 (461)
Q Consensus 222 --~~L------------------------------~~L~l~~n~l~~~-----~-------------------------- 238 (461)
++| +.|++++|.+... .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 444 4555554432100 0
Q ss_pred -----------cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCC
Q 037538 239 -----------LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREI 307 (461)
Q Consensus 239 -----------~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (461)
...++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 328 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--- 328 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC---
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc---
Confidence 002456777777777766666667777777777777777777777777777777777777777765
Q ss_pred CCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC--------------------------
Q 037538 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI-------------------------- 361 (461)
Q Consensus 308 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------- 361 (461)
..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..
T Consensus 329 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 329 ---LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp ---CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred ---cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccc
Confidence 3344566777888888888877655555555554 7777777777665311
Q ss_pred --------------chhhhcCCCCCeeecccCcCccccch-hhhcCCCCCeeccccccCc-----ccCChhhhcCccCCe
Q 037538 362 --------------PVGIENLVNLSLLGLEGNNLSGSVPE-VIGRLNKLEGLELNANKFS-----GFMPSSLGNLTVLSR 421 (461)
Q Consensus 362 --------------p~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~ 421 (461)
+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 11123556666666666666532211 1222334444444444433 122233444555555
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++++|++++..|..+..+++|+.|++++|+++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 555555555555555555555555555555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=326.55 Aligned_cols=293 Identities=32% Similarity=0.517 Sum_probs=205.8
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--eeeEEecCCC--CcEEEEEcCCCCccc--ccCccccCCCCCC
Q 037538 32 ATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSPSN--GRVTVLKLESKQLVG--SIPASIGNLTNLT 105 (461)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~ 105 (461)
.|.++|+.||++||+++. +|. .+.+|..+.+||. |.||+|+... ++|++|+++++.+.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 589999999999999996 665 6789988889998 9999998654 789999999999988 8888899999999
Q ss_pred EEecCC-CCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 106 GINLFQ-NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 106 ~L~L~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
+|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999985 8888888888888888888888888888788888888888888888888888778888888888888888888
Q ss_pred CCcccCCccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 185 NLTGNIPAWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 185 ~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
.+++.+|..+..++ +|++|++++|.+++.+|.. +.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--------------------------------------------~~ 195 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------------------------------------------FA 195 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--------------------------------------------GG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChH--------------------------------------------Hh
Confidence 87777777777766 6777777776666555544 33
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.++ |++|++++|.+++..|..+..+++|+.|++++|++++ ..+. +..+++|++|++++|.+++.+|..+..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------ecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 333 6666666666666666666666666666666665543 1111 3334445555555544444444444333
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCc
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 380 (461)
+ +|++|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 268 ~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 268 K-FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp T-TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3 4444444444444434332 334444444444443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=339.20 Aligned_cols=361 Identities=19% Similarity=0.228 Sum_probs=289.6
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+..+.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999998777788999999999999999999877889999999999999999998 67766 8999999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCC--CEEECccCCC--cccCChhhhc------------
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL--QVLLLARNNL--HGSIPNELGQ------------ 220 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~------------ 220 (461)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999987 578999999999999999999886 346667777 9999999998 6666655544
Q ss_pred --------------CCCCcEEecCCCC------------------------------chhh-----c--cCCCCCcEEEc
Q 037538 221 --------------LSALGFFTLYENF------------------------------ISDV-----G--LTLPNLKIFAG 249 (461)
Q Consensus 221 --------------l~~L~~L~l~~n~------------------------------l~~~-----~--~~l~~L~~L~l 249 (461)
+++|+.+++++|. +... . ...++|+.|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 4455555555553 2110 0 01347788888
Q ss_pred cCccCccccChhh-----cCCCCCCEEEcccccccccCCc--------------------------cCCCCCCCCEEEcc
Q 037538 250 GVNYFTGSIPVSL-----SNASNLQVLDFAENGLTGTIPE--------------------------NFGSLKDLVRLNFD 298 (461)
Q Consensus 250 ~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~L~ 298 (461)
++|.++|.+|..+ .++++|+.+++++|.+ .+|. .+..+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 8888877777776 6666666666555554 2220 12677889999999
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccchHHHhccccccEEEccCCcCcccCchh-hhcCCCCCeee
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPISIANLSTHLRILTMGYNLMHGNIPVG-IENLVNLSLLG 375 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ 375 (461)
+|++++ ..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|.+++.+|.. +..+++|+.|+
T Consensus 333 ~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 333 NNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp SSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred CCccCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 998887 455667888999999999999986 5666777776 8999999999998756654 77889999999
Q ss_pred cccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc-CCCCCCCCEEEccCCCCc
Q 037538 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 376 Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~ 454 (461)
+++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 999999888777664 78999999999998 78888889999999999999999 56664 889999999999999998
Q ss_pred ccC
Q 037538 455 GTI 457 (461)
Q Consensus 455 ~~i 457 (461)
+..
T Consensus 482 c~c 484 (520)
T 2z7x_B 482 CSC 484 (520)
T ss_dssp CCH
T ss_pred ccC
Confidence 754
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=340.93 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++++|.+.+..+.++.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 35666666666665444445666667777777766666555556666777777777777666666666666666666666
Q ss_pred cCCcCCCcCchhhc--CCCCCcEEEccCCCCcccC---------------------------------------------
Q 037538 158 SANDFIGQIPDQLI--SLTKLEIIRLGTSNLTGNI--------------------------------------------- 190 (461)
Q Consensus 158 ~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~--------------------------------------------- 190 (461)
++|.+++..+..+. .+++|++|++++|.+.+..
T Consensus 153 ~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred cCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 66665544443322 2344444444444433222
Q ss_pred ------CccCCCCC--CCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 191 ------PAWVGNFS--SLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 191 ------~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
|..+..++ +|++|++++|.+.+..|..++.+++|++|++++|.+.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 22222232 3777777777776666666777777777777766653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=354.38 Aligned_cols=374 Identities=22% Similarity=0.234 Sum_probs=257.4
Q ss_pred CcEEEEEcCCCCccccc-CccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcC--CCCCCCCCE
Q 037538 78 GRVTVLKLESKQLVGSI-PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTN--LSHCTELRS 154 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~ 154 (461)
.+++.|++++|...+.+ |.++.++++|++|+|++|.+.+..|..|..+++|++|++++|.+++.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45677777777554444 556777777777777777777666777777777777777777776555544 667777777
Q ss_pred EEccCCcCCCcCc-hhhcCCCCCcEEEccCCCCcccCCc--------------------------cCCCCCC------CC
Q 037538 155 FEASANDFIGQIP-DQLISLTKLEIIRLGTSNLTGNIPA--------------------------WVGNFSS------LQ 201 (461)
Q Consensus 155 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------~l~~l~~------L~ 201 (461)
|++++|.+.+..+ ..++++++|++|++++|.+++..+. .+..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 7777777665433 4566777777777776666543332 2222222 77
Q ss_pred EEECccCCCcccCChhhhc--------------------------------------CCCCcEEecCCCCchhh----cc
Q 037538 202 VLLLARNNLHGSIPNELGQ--------------------------------------LSALGFFTLYENFISDV----GL 239 (461)
Q Consensus 202 ~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~~~----~~ 239 (461)
+|++++|.+++..+..+.. .++|+.|++++|.+... ..
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777777665544433322 15677777777776443 34
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.... +..+.++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l 361 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ------DQTFKFL 361 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC------SSCSCSC
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC------hhhhcCC
Confidence 5677777777777777777777777777777777777777666777777777777777777776532 2234455
Q ss_pred CCCCEEEccCCcCcc------------------cc----------------------chHHHhccccccEEEccCCcCcc
Q 037538 320 TSLEVLGLAQNGFGG------------------EM----------------------PISIANLSTHLRILTMGYNLMHG 359 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~------------------~~----------------------~~~~~~~~~~L~~L~l~~n~l~~ 359 (461)
++|+.|++++|.+++ .+ +..+..++ +|++|++++|.+++
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccc
Confidence 555555555555432 11 11123444 89999999999886
Q ss_pred cCch-hhhcCCCCCeeecccCcCc-----cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccC
Q 037538 360 NIPV-GIENLVNLSLLGLEGNNLS-----GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSI 433 (461)
Q Consensus 360 ~~p~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 433 (461)
..+. .+..+++|+.|++++|.+. +..+..+.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 4432 3456789999999999987 344456788899999999999999888888999999999999999998766
Q ss_pred CccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 434 PPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 434 p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
|..+. ++|+.|++++|+++|.+|..
T Consensus 521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 521 HNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred hhhhh--ccccEEECCCCcCCCCChhH
Confidence 66665 78999999999999888764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=336.75 Aligned_cols=372 Identities=20% Similarity=0.175 Sum_probs=287.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..+++|+|++|.+++..+.+|.++++|++|+|++|++++..+.+|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999777789999999999999999999777888999999999999999999666678999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCc----EEecCCC
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALG----FFTLYEN 232 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n 232 (461)
++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997767789999999999999999875 4678889999999999999999876665554333221 2222222
Q ss_pred Cchh----------------------------------------------------------------------------
Q 037538 233 FISD---------------------------------------------------------------------------- 236 (461)
Q Consensus 233 ~l~~---------------------------------------------------------------------------- 236 (461)
.+..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 2100
Q ss_pred -------------------------------hccCCCCCcEEEccCccCccccC-------------------hhhcCCC
Q 037538 237 -------------------------------VGLTLPNLKIFAGGVNYFTGSIP-------------------VSLSNAS 266 (461)
Q Consensus 237 -------------------------------~~~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~~~ 266 (461)
.......++.+++.+|.+.+..+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00011234444444443322111 1122356
Q ss_pred CCCEEEccccccccc--CC-----------------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 267 NLQVLDFAENGLTGT--IP-----------------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 267 ~L~~L~l~~n~l~~~--~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
+|+.+++++|.+... .+ ..+..+++|+.+++..+..... .....+..+++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~l~~ 446 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSLRN 446 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST-----TSSCTTTTCTT
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc-----ccccccccccc
Confidence 677777777765322 22 2344455555555555544332 12234677889
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL 400 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 400 (461)
++.++++.|.+.+..+..+...+ .+++|++++|... +..|..+..+++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 99999999999877776666665 8999999999754 457788899999999999999999888999999999999999
Q ss_pred ccccCcccCChhhhcCccCCeeecccccccccCCccCCCC-CCCCEEEccCCCCcc
Q 037538 401 NANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC-KKLQVLNLSSNNLNG 455 (461)
Q Consensus 401 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~ 455 (461)
++|++++..|..|..+++|+.|++++|++++..|..+..+ ++|+.|++++|++.-
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999998888999999999999999999999999999888 689999999999864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=332.29 Aligned_cols=369 Identities=18% Similarity=0.182 Sum_probs=272.8
Q ss_pred EcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCC
Q 037538 84 KLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFI 163 (461)
Q Consensus 84 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 163 (461)
+-++.+++ .+|..+. +++++|++++|.+++..+.+|..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 33344444 4565443 68999999999999878888999999999999999999777888999999999999999999
Q ss_pred CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc-cCChhhhcCCCCcEEecCCCCchhhc----
Q 037538 164 GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG-SIPNELGQLSALGFFTLYENFISDVG---- 238 (461)
Q Consensus 164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~---- 238 (461)
+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 8888899999999999999999996555579999999999999999986 57999999999999999999886542
Q ss_pred cCCCCC----cEEEccCccCccc---------------------------------------------------------
Q 037538 239 LTLPNL----KIFAGGVNYFTGS--------------------------------------------------------- 257 (461)
Q Consensus 239 ~~l~~L----~~L~l~~n~~~~~--------------------------------------------------------- 257 (461)
..+++| ..+++++|.+++.
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 123334 5666666554432
Q ss_pred ------------------------cChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCc---
Q 037538 258 ------------------------IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDL--- 310 (461)
Q Consensus 258 ------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 310 (461)
.|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+...+...+
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccccccc
Confidence 3344555678888888888776 456666555 66666666655543221100
Q ss_pred ------------------------------------hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 311 ------------------------------------NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 311 ------------------------------------~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
..+..+..+++|+.|++++|.+.+..+ .+..++ +|++|++++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~ 405 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLE-QLEHLDFQH 405 (570)
T ss_dssp CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCT-TCCEEECTT
T ss_pred CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccC-CCCEEEccC
Confidence 012333444445555555554443222 233333 566666666
Q ss_pred CcCcccCc-hhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChhhhcCccCCeeeccccccccc
Q 037538 355 NLMHGNIP-VGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 355 n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 66665444 35667778888888888887777777888888888888888887 56788888888888888888888887
Q ss_pred CCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 433 IPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 433 ~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.|..+..+++|+.|++++|++++..|.
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 788888888888888888888866554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=332.64 Aligned_cols=362 Identities=22% Similarity=0.230 Sum_probs=285.1
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+.+..+.++.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57899999999998777788999999999999999998877888999999999999999988 67766 8899999999
Q ss_pred cCCcCCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCC--CEEECccCCC--cccCChhhhc------------
Q 037538 158 SANDFIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSL--QVLLLARNNL--HGSIPNELGQ------------ 220 (461)
Q Consensus 158 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~------------ 220 (461)
++|++.+ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999886 4568899999999999999988753 34445555 9999999988 6666655544
Q ss_pred --------------CCCCcEEecCCCCc----------------------------h-----hh--ccCCCCCcEEEccC
Q 037538 221 --------------LSALGFFTLYENFI----------------------------S-----DV--GLTLPNLKIFAGGV 251 (461)
Q Consensus 221 --------------l~~L~~L~l~~n~l----------------------------~-----~~--~~~l~~L~~L~l~~ 251 (461)
+++|+.+++++|.. . .+ ....++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 33566666666531 0 00 01124788888888
Q ss_pred ccCccccChhh-----cCC--------------------------CCCCEEEcccccccccCCccCCCCCCCCEEEcccC
Q 037538 252 NYFTGSIPVSL-----SNA--------------------------SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300 (461)
Q Consensus 252 n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (461)
|.++|.+|..+ .++ .+|++|++++|.+.... ....+++|++|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 88887777655 222 23556666666553221 1267889999999999
Q ss_pred cCcccCCCCchhhhhhcCCCCCCEEEccCCcCcc--ccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCeeecc
Q 037538 301 ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGG--EMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLLGLE 377 (461)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls 377 (461)
++++ ..+..+.++++|+.|++++|++++ .+|..+..++ +|++|++++|.+++.+|. .+..+++|+.|+++
T Consensus 364 ~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 364 VFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp CCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred cccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 9987 456677889999999999999985 3445566666 999999999999985554 47788999999999
Q ss_pred cCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc-CCCCCCCCEEEccCCCCccc
Q 037538 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS-LGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 378 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~ 456 (461)
+|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999887776654 79999999999998 78888779999999999999999 56665 89999999999999999876
Q ss_pred CC
Q 037538 457 IP 458 (461)
Q Consensus 457 ip 458 (461)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=316.46 Aligned_cols=331 Identities=18% Similarity=0.194 Sum_probs=278.0
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC-CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI-PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 180 (461)
++|++|++++|.+++..|..|..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999987555 56799999999999999999988899999999999999
Q ss_pred ccCCCCcccCCcc--CCCCCCCCEEECccCCCcccCChh-hhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccc
Q 037538 181 LGTSNLTGNIPAW--VGNFSSLQVLLLARNNLHGSIPNE-LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGS 257 (461)
Q Consensus 181 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~ 257 (461)
+++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+ ++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~~ 169 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV--------------------KSI 169 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB--------------------SCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc--------------------ccc
Confidence 9999998755544 889999999999999999877765 67777666666666554 444
Q ss_pred cChhhcCC--CCCCEEEcccccccccCCcc--------CCCCCCCCEEEcccCcCcccCCCCchhhhhhcC---CCCCCE
Q 037538 258 IPVSLSNA--SNLQVLDFAENGLTGTIPEN--------FGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN---CTSLEV 324 (461)
Q Consensus 258 ~~~~l~~~--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~---~~~L~~ 324 (461)
.+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++ ..+..+.. .++|+.
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE------SMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH------HHHHHHHHHTTTCCEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc------cchhhhhccccccceee
Confidence 44445443 67889999999887655443 3366899999999999987 44444433 489999
Q ss_pred EEccCCcCcccc----------chHHHhc-cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCC
Q 037538 325 LGLAQNGFGGEM----------PISIANL-STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLN 393 (461)
Q Consensus 325 L~L~~n~~~~~~----------~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 393 (461)
|++++|...+.. +..+..+ .++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 999988654321 1112211 13899999999999999999999999999999999999988888999999
Q ss_pred CCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 394 KLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+ +|.
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCH
Confidence 99999999999998889999999999999999999999889999999999999999999985 443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=323.63 Aligned_cols=362 Identities=19% Similarity=0.202 Sum_probs=294.2
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 6777666 89999999999999877889999999999999999999877899999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC--cEEecCCCCc--h
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL--GFFTLYENFI--S 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 235 (461)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56766 89999999999999987 578899999999999999999986 457778888 9999999887 1
Q ss_pred h-hcc-----------------------------CCCCCcEEEccCcc-------CccccChhhcC--------------
Q 037538 236 D-VGL-----------------------------TLPNLKIFAGGVNY-------FTGSIPVSLSN-------------- 264 (461)
Q Consensus 236 ~-~~~-----------------------------~l~~L~~L~l~~n~-------~~~~~~~~l~~-------------- 264 (461)
. ... .+++|+.+++++|. +.+.+| .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 1 111 13344444444443 222222 1222
Q ss_pred -------------CCCCCEEEcccccccccCCccC-----CCCCCCCEEEcccCcCcccCCCCchhhh------------
Q 037538 265 -------------ASNLQVLDFAENGLTGTIPENF-----GSLKDLVRLNFDQNELGSREIGDLNFLK------------ 314 (461)
Q Consensus 265 -------------~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------ 314 (461)
.++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ ..+.. .+..
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~--~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS--YIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH--HHHHHHHTCCCSEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchh--hhhcccccCceeEEEc
Confidence 3478888888888888888877 7788877777777776 21100 0000
Q ss_pred ---------hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCcCcc
Q 037538 315 ---------FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNNLSG 383 (461)
Q Consensus 315 ---------~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~ 383 (461)
....+++|++|++++|++++.+|..+..++ +|++|++++|.+++ .+|..+..+++|++|++++|.+.+
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 015788999999999999988888887776 99999999999986 566788999999999999999997
Q ss_pred ccchh-hhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 384 SVPEV-IGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 384 ~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
.+|.. +..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 67764 77889999999999999988777664 79999999999999 78988889999999999999998 67764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=323.47 Aligned_cols=376 Identities=17% Similarity=0.184 Sum_probs=280.3
Q ss_pred CcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCc
Q 037538 65 FCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPT 144 (461)
Q Consensus 65 ~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 144 (461)
.|.|.|+ |+. ++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888877 743 455555 5666554 8999999999999988888999999999999999999988888
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCC-hhhhcCC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLS 222 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~ 222 (461)
.|.++++|++|++++|.+.+..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999986 457789999999999999999555555 6899999
Q ss_pred CCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccC--C-ccCCCCCCCCEE
Q 037538 223 ALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI--P-ENFGSLKDLVRL 295 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L 295 (461)
+|++|++++|.+... ...+++|+.|+++.|.+.......+..+++|++|++++|.+++.. + .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 999999999988643 345788999999999876433333456899999999999887642 1 111222333333
Q ss_pred EcccCcC----------------------------cccCCC-------------------------------C-------
Q 037538 296 NFDQNEL----------------------------GSREIG-------------------------------D------- 309 (461)
Q Consensus 296 ~L~~n~l----------------------------~~~~~~-------------------------------~------- 309 (461)
++++|.+ .+.... .
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 3332222 110000 0
Q ss_pred --------------chhhhhh-cCCCCCCEEEccCCcCccccchH---HHhccccccEEEccCCcCcccCc--hhhhcCC
Q 037538 310 --------------LNFLKFL-ANCTSLEVLGLAQNGFGGEMPIS---IANLSTHLRILTMGYNLMHGNIP--VGIENLV 369 (461)
Q Consensus 310 --------------~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~ 369 (461)
..++..+ ..+++|++|++++|.+++.+|.. +..++ +|++|++++|++++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCC
Confidence 0122222 46788888888888888766543 34444 78888888888875432 4577788
Q ss_pred CCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChh------------------hhcCccCCeeecccccccc
Q 037538 370 NLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSS------------------LGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~ 431 (461)
+|++|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|+.|++++|+++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 8888888888887 677777777777777777777652 2222 136778888888888887
Q ss_pred cCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 432 SIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 432 ~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.+|. ...+++|+.|++++|++++.+|.
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 6666 45688899999999998876664
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=312.43 Aligned_cols=342 Identities=29% Similarity=0.389 Sum_probs=286.0
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.|++.++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 468899999988863 44 47889999999999999985 444 8999999999999999985443 889999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.+..+
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC
Confidence 99998764 33 8899999999999999884 33 48889999999996 455433 2388999999999999988654
Q ss_pred c--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 238 G--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 238 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
. ..+++|+.|++++|.+++..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.. .
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~ 260 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--------P 260 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------G
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--------h
Confidence 3 457899999999999987665 77789999999999998754 46788999999999999987632 1
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+++|+.|++++|.+++..+ +..++ +|++|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 7788999999999999986444 55555 89999999999987544 7889999999999999997655 7789999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999865 578899999999999999998777 8889999999999999886
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=309.35 Aligned_cols=316 Identities=19% Similarity=0.216 Sum_probs=252.0
Q ss_pred CCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcC
Q 037538 87 SKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQI 166 (461)
Q Consensus 87 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 166 (461)
+++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..
T Consensus 20 ~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 20 RKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp SCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 34444 4565443 68999999999999877888999999999999999999777889999999999999999988666
Q ss_pred chhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcE
Q 037538 167 PDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKI 246 (461)
Q Consensus 167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~ 246 (461)
+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++ |+.
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------L~~ 156 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--------------------LEQ 156 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT--------------------CCE
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC--------------------CCE
Confidence 667888999999999999998888888889999999999999888766666665544 444
Q ss_pred EEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEE
Q 037538 247 FAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326 (461)
Q Consensus 247 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 326 (461)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .++.......+|+.|+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD------TMTPNCLYGLNLTSLS 230 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC------EECTTTTTTCCCSEEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc------ccCcccccCccccEEE
Confidence 5555555555555678889999999999999988888888899999999999887655 3333344455888888
Q ss_pred ccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc
Q 037538 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 327 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
+++|++++..+..+..++ +|++|++++|.+++..+..+..+++|+.|+|++|++.+..|..+..+++|+.|++++|+++
T Consensus 231 l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 888888743334555555 8888888888888777777888888888888888888777888888888888888888888
Q ss_pred ccCChhhhcCccCCeeeccccccccc
Q 037538 407 GFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 407 ~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+..+..|..+++|+.|++++|++...
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred eeCHhHcCCCcccCEEEccCCCccCc
Confidence 76666778888888888888888743
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=298.65 Aligned_cols=349 Identities=16% Similarity=0.164 Sum_probs=233.4
Q ss_pred CCCCCCCCCCcc-eeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCC
Q 037538 56 MSSWNDSVHFCN-WVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLT 134 (461)
Q Consensus 56 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 134 (461)
++.|..+.+||. |.+..|.... +.+............-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 467887767664 5555554211 1111111111111122346899999999999885444557889999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccC
Q 037538 135 YNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSI 214 (461)
Q Consensus 135 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 214 (461)
+|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.++...+..+.++++|++|++++|.+.+..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998777778999999999999999998888888999999999999999998444444688999999999999999877
Q ss_pred ChhhhcCCCCcEEecCCCCchhhc-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 215 PNELGQLSALGFFTLYENFISDVG-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
+..+..+++|++|++++|.+..+. ..+++|+.+++++|.+++ +...++|++|++++|.+..... ...++|+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~ 229 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELT 229 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCC
T ss_pred hhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc---ccccccc
Confidence 778888899999999888876543 336677777777776653 2334567777777777664422 2235677
Q ss_pred EEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCe
Q 037538 294 RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSL 373 (461)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 373 (461)
.|++++|.+++. ..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++ +|..+..+++|+.
T Consensus 230 ~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 230 ILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp EEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred EEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 777777766542 3455666777777777766665566665554 66666666666664 3444455666666
Q ss_pred eecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 374 LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 374 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
|++++|++. .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++++
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 666666666 4555566666666666666666533 2 4555666666666666654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=308.45 Aligned_cols=343 Identities=24% Similarity=0.326 Sum_probs=178.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCC-------------CEEeCCCCCCCCCCCc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKL-------------QDLNLTYNYLSGKIPT 144 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~p~ 144 (461)
.++++++++++.+ +.+|++++++++|++|++++|.+.|.+|.+++.+++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5788888998888 7888889999999999999988888888888877654 888888888773 444
Q ss_pred CCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC
Q 037538 145 NLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL 224 (461)
Q Consensus 145 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 224 (461)
. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3577777777777765 5542 3566666666666653 2221 1466666666666664 45 46666666
Q ss_pred cEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccc-------------------cCCcc
Q 037538 225 GFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTG-------------------TIPEN 285 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-------------------~~~~~ 285 (461)
++|++++|.+..+....++|++|++++|.+++ +| .+..+++|++|++++|.+++ .+| .
T Consensus 156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~ 232 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-E 232 (454)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-C
T ss_pred CEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-c
Confidence 66666666665554445566666666666654 34 35555555555555555443 233 2
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCch
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPV 363 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~ 363 (461)
++.+++|++|++++|++++.+. ..++|+.|++++|.+++ +|.. .++|++|++++|.+++ .+|.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCCCT
T ss_pred cCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCcCC
Confidence 5555566666666665554211 11344444444444442 2211 1244444444444443 1111
Q ss_pred hh-------------hcC-CCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 364 GI-------------ENL-VNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 364 ~~-------------~~l-~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
.+ ..+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|++++|++
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 11 112 467777777777764 4443 467888888888887 4565 467888888888888
Q ss_pred cc--cCCccCCCC-------------CCCCEEEccCCCCcc--cCCCCC
Q 037538 430 EG--SIPPSLGNC-------------KKLQVLNLSSNNLNG--TIPKEV 461 (461)
Q Consensus 430 ~~--~~p~~l~~l-------------~~L~~L~ls~N~l~~--~ip~~~ 461 (461)
++ .+|.++..+ ++|+.|++++|++.| .+|.++
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SSCCCCCTTCCEEECCC--------------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 87 677777776 778888888888887 788653
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=315.44 Aligned_cols=357 Identities=19% Similarity=0.204 Sum_probs=284.2
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.++++++++++ +|..+. +++++|++++|.+++..+.+|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999984 776654 89999999999999777789999999999999999999888999999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcc-cCCccCCCCCCCCEEECccCCCcccCChhhhcCCCC--cEEecCCCCc--h
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTG-NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL--GFFTLYENFI--S 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 235 (461)
+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 56766 89999999999999986 4568899999999999999999863 45555555 9999999877 2
Q ss_pred hhc------------------------------cCCCCCcEEEccCcc----------------------------Cccc
Q 037538 236 DVG------------------------------LTLPNLKIFAGGVNY----------------------------FTGS 257 (461)
Q Consensus 236 ~~~------------------------------~~l~~L~~L~l~~n~----------------------------~~~~ 257 (461)
... ..+++|+.++++.|. +++.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 110 123345555555542 1110
Q ss_pred ----cChhhcCCCCCCEEEcccccccccCCccC-----CCCCC--------------------------CCEEEcccCcC
Q 037538 258 ----IPVSLSNASNLQVLDFAENGLTGTIPENF-----GSLKD--------------------------LVRLNFDQNEL 302 (461)
Q Consensus 258 ----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~--------------------------L~~L~L~~n~l 302 (461)
++.. ...++|++|++++|.+++.+|..+ ..++. |++|++++|.+
T Consensus 265 ~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 1111 122478888888888888888765 33333 44444444444
Q ss_pred cccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc--cCchhhhcCCCCCeeecccCc
Q 037538 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG--NIPVGIENLVNLSLLGLEGNN 380 (461)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~ 380 (461)
.... ....+++|++|++++|.+++.+|..+..++ +|++|++++|++++ .+|..+..+++|+.|++++|.
T Consensus 344 ~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 344 IHMV--------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp CCCC--------CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cccc--------CccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 3211 115788999999999999988888888776 99999999999986 335668899999999999999
Q ss_pred Cccccch-hhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 381 LSGSVPE-VIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 381 l~~~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 9985665 477889999999999999987776654 79999999999998 78888889999999999999998 7876
Q ss_pred C
Q 037538 460 E 460 (461)
Q Consensus 460 ~ 460 (461)
+
T Consensus 491 ~ 491 (562)
T 3a79_B 491 G 491 (562)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=304.15 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=247.5
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|+++++.+.+. | .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++ ++ ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 6789999999999864 4 68999999999999999986 44 8899999999999999985 44 889999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|++++ ++ ++.+++|++|++++|.+++ + .++++++|++|++++|...+.+ .+..+++|++|++++|.+..+
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9999986 44 8899999999999999996 3 3788999999999999766666 478899999999999988765
Q ss_pred c-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 238 G-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 238 ~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
. ..+++|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++.+.
T Consensus 186 ~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--------- 250 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--------- 250 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---------
T ss_pred ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---------
Confidence 4 4578899999999999875 37888999999999999987 45 7889999999999999987542
Q ss_pred cCCCCCC----------EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchh--------hhcCCCCCeeeccc
Q 037538 317 ANCTSLE----------VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG--------IENLVNLSLLGLEG 378 (461)
Q Consensus 317 ~~~~~L~----------~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~l~~L~~L~Ls~ 378 (461)
..+++|+ .|++++|.+.+.+|. ..++ +|+.|++++|...+.+|.. +.++++|+.|++++
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCR-KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccc-cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 2334444 444445544444442 2222 5666666666554444421 33345555555555
Q ss_pred CcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 379 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|++++. + ++.+++|+.|++++|++++ ++.|..|++++|.+.|. .++..|+.+++++|+++|.||
T Consensus 328 N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 328 TELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred Cccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 555542 2 5555556666666555553 13344445555555543 234567888999999999999
Q ss_pred CCC
Q 037538 459 KEV 461 (461)
Q Consensus 459 ~~~ 461 (461)
.++
T Consensus 392 ~~~ 394 (457)
T 3bz5_A 392 PDL 394 (457)
T ss_dssp TTC
T ss_pred hhH
Confidence 753
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=310.48 Aligned_cols=352 Identities=16% Similarity=0.164 Sum_probs=240.8
Q ss_pred CCCCCCCCCCCCCCCcc----eeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCC
Q 037538 51 DPLQIMSSWNDSVHFCN----WVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQ 126 (461)
Q Consensus 51 ~~~~~~~~w~~~~~~c~----w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 126 (461)
+.+..++.|.++.+||. |.++.|+. .++-........+ .-..+++++.+++++|.+....+..+..++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~--~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~ 75 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFR 75 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESC--SSGGGCCCSEEEESSCEESEECTHHHHHCC
T ss_pred cccccccCCCCCCcCcccCcCceeEecCc------eecccccccccCc--ccccCCCceEEEeeCCCCCCcCHHHHccCC
Confidence 34455788988777764 55444431 1111111111111 122467889999999988865555678889
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|.+++..|..|+.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 99999999999987777789999999999999999988777788899999999999999885555556889999999999
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhhc-cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVG-LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
+|.+.+..|..++.+++|++|++++|.+..+. ..+++|+.+++++|.+++ +...++|++|++++|.+....+..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc
Confidence 99998888888888888888888888776543 336677777777776654 334456777777777776443321
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
.++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+++ +|..+
T Consensus 231 ---~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~ 297 (597)
T 3oja_B 231 ---NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVA-LNLYG 297 (597)
T ss_dssp ---CSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSCCCE-EECSS
T ss_pred ---CCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCCCCC-CCccc
Confidence 25677777777776641 3456667777777777777766666666665 67777777777665 34455
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccccccc
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 55667777777777766 5566666667777777777776643 2 44556677777777766543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=310.75 Aligned_cols=366 Identities=18% Similarity=0.192 Sum_probs=285.7
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. +.+++|+|++|+|++..+.+|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5666553 57999999999999777788999999999999999999777778999999999999999999777778999
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc-cCChhhhcCCCCcEEecCCCCchhhcc-------CCC-C
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG-SIPNELGQLSALGFFTLYENFISDVGL-------TLP-N 243 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~l~-~ 243 (461)
+++|++|++++|++++..+..++++++|++|++++|.+.+ ..|..++.+++|++|++++|.+..+.. .++ .
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999997666779999999999999999975 467889999999999999998854320 000 0
Q ss_pred -----------------------CcEEEccCccCccc-------------------------------------------
Q 037538 244 -----------------------LKIFAGGVNYFTGS------------------------------------------- 257 (461)
Q Consensus 244 -----------------------L~~L~l~~n~~~~~------------------------------------------- 257 (461)
++.+++..|.....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 11222222211000
Q ss_pred -------------------------------------cChhhcCCCCCCEEEcccccccccCCc----------------
Q 037538 258 -------------------------------------IPVSLSNASNLQVLDFAENGLTGTIPE---------------- 284 (461)
Q Consensus 258 -------------------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~---------------- 284 (461)
....+.....++.|++.+|.+.+..+.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 000122345677888888766543222
Q ss_pred ---cCCCCCCCCEEEcccCcCcccCCCC-------------------chhhhhhcCCCCCCEEEccCCcCccccchH-HH
Q 037538 285 ---NFGSLKDLVRLNFDQNELGSREIGD-------------------LNFLKFLANCTSLEVLGLAQNGFGGEMPIS-IA 341 (461)
Q Consensus 285 ---~~~~l~~L~~L~L~~n~l~~~~~~~-------------------~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-~~ 341 (461)
....+++|+.++++.|.+....... ......+..+++|+.++++.++.....+.. +.
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccc
Confidence 2235788999999999876432110 011233455677777777777665444433 33
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 420 (461)
.+. +++.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|+
T Consensus 443 ~l~-~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 443 SLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccc-ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 444 8999999999999988888999999999999999865 45778899999999999999999999999999999999
Q ss_pred eeecccccccccCCccCCCCCCCCEEEccCCCCcccCCCCC
Q 037538 421 RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~~~ 461 (461)
.|+|++|+|++..|..+.++++|++|++++|++++..|+++
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 99999999998888899999999999999999998877653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=300.15 Aligned_cols=314 Identities=18% Similarity=0.168 Sum_probs=272.5
Q ss_pred eeeEEecCC---------CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCC
Q 037538 68 WVGVTCSPS---------NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138 (461)
Q Consensus 68 w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (461)
|..+.|... ...++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 456666532 25789999999999988888999999999999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhh
Q 037538 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNEL 218 (461)
Q Consensus 139 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 218 (461)
++..+..|.++++|++|++++|++.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 96555678999999999999999998888999999999999999999998888899999999999999999986555566
Q ss_pred hcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 037538 219 GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFD 298 (461)
Q Consensus 219 ~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 298 (461)
..+++| +.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|+++
T Consensus 173 ~~l~~L--------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 173 SHLHGL--------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TTCTTC--------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred cccCCC--------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 665554 455555556666666788899999999999998888888877777899999999
Q ss_pred cCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeeccc
Q 037538 299 QNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEG 378 (461)
Q Consensus 299 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 378 (461)
+|+++. .....+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..|..+..+++|+.|++++
T Consensus 233 ~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 233 HCNLTA------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp SSCCCS------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred CCcccc------cCHHHhcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 999986 2235678899999999999999976666677776 999999999999998899999999999999999
Q ss_pred CcCccccchhhhcCCCCCeeccccccCccc
Q 037538 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 379 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
|.+++..+..|..+++|+.|++++|++.+.
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999987777889999999999999999743
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=292.50 Aligned_cols=326 Identities=26% Similarity=0.355 Sum_probs=279.8
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++++.|+++++.+. .+|. +..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34689999999999987 4664 88899999999999999854 44 8999999999999999986544 999999999
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh--hccCCCCCcEEEccCccCcc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD--VGLTLPNLKIFAGGVNYFTG 256 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~l~~L~~L~l~~n~~~~ 256 (461)
|++++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|++|++++ .+.. ....+++|+.|++++|.+++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCC
Confidence 99999999854 33 8899999999999999985 33 589999999999974 3322 13568999999999999876
Q ss_pred ccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc
Q 037538 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336 (461)
Q Consensus 257 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 336 (461)
. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|++++. ..+..+++|+.|++++|.+++..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCG
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccch
Confidence 4 358899999999999999987655 77899999999999998763 35678999999999999998655
Q ss_pred chHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcC
Q 037538 337 PISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNL 416 (461)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l 416 (461)
+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+
T Consensus 260 ~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 260 P--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp G--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred h--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 4 55665 99999999999987544 8899999999999999996544 7899999999999999997665 7899
Q ss_pred ccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 417 TVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
++|+.|++++|++++. ..+.++++|+.|++++|++++.+|
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 9999999999999975 578999999999999999998766
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=277.72 Aligned_cols=305 Identities=26% Similarity=0.387 Sum_probs=182.0
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++|++|+++++.+. .++. +..+++|++|++++|.++ .++. +..+++|++|++++|.++. + +.+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 3455555555555554 2332 445555555555555554 2222 5555555555555555543 2 235555555555
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|.+.+ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.. ..+
T Consensus 116 ~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------------------~~~ 172 (347)
T 4fmz_A 116 YLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--------------------VTP 172 (347)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC--------------------CGG
T ss_pred ECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC--------------------chh
Confidence 555555553 222 4555555555555554432222 24444444444444333221 111
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 339 (461)
+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+.. .+..+++|++|++++|.+++..+
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred --hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCCcc--
Confidence 4455566666666665553322 555666666666666665421 14556677777777776664332
Q ss_pred HHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccC
Q 037538 340 IANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419 (461)
Q Consensus 340 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 419 (461)
+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 239 ~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 44444 777777777777642 3577788888888888888753 357788888888888888888888888888889
Q ss_pred CeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 420 SRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999998886655 778888999999998875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=279.62 Aligned_cols=310 Identities=17% Similarity=0.177 Sum_probs=269.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 57889999999887554455788999999999999999777778999999999999999999877888999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.+..+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999854444578999999999999999987788899999999999999999854 367889999999999999876
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
.. .+.|+.+++++|.+... |. ...++|++|++++|.+++. ..+..+++|++|++++|.+++ ..+..+.
T Consensus 202 ~~-~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~ 269 (390)
T 3o6n_A 202 AI-PIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------IMYHPFV 269 (390)
T ss_dssp EC-CSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE------EESGGGT
T ss_pred CC-CCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC------cChhHcc
Confidence 54 67899999999998764 32 2347999999999999864 578999999999999999987 4567788
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|+.|++++|++++ ++..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.++.. + +..+++|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~-~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCC-CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 99999999999999984 555555555 9999999999998 5677788999999999999999854 3 678899999
Q ss_pred eccccccCccc
Q 037538 398 LELNANKFSGF 408 (461)
Q Consensus 398 L~L~~n~l~~~ 408 (461)
|++++|++.+.
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 99999999854
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=286.37 Aligned_cols=304 Identities=20% Similarity=0.181 Sum_probs=219.6
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
..+..+.++++|++|++++|.+++ +| .+..+++|++|++++|++++ +| ++.+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 334467789999999999999985 45 68999999999999999985 44 88999999999999999874 3 889
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCC-chhh-ccCCCCCcEEEcc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF-ISDV-GLTLPNLKIFAGG 250 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~l~~L~~L~l~ 250 (461)
+++|++|++++|.+++ ++ +.++++|++|++++|.+++. + ++.+++|++|++++|. +..+ ...+++|+.|+++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 9999999999999996 44 88999999999999999963 3 8889999999999984 3332 2457888999999
Q ss_pred CccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 251 VNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 251 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
+|.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++. + +..+++|+.|++++|
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-------p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-------D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-------C--CTTCTTCSEEECCSS
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-------C--ccccCCCCEEEeeCC
Confidence 998887 44 77888899999999888865 377888899999999888763 1 567788899999998
Q ss_pred cCccccchHHHhcc------ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchh--------hhcCCCCC
Q 037538 331 GFGGEMPISIANLS------THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEV--------IGRLNKLE 396 (461)
Q Consensus 331 ~~~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--------l~~~~~L~ 396 (461)
.+++..+..+..+. .+|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.. +.++++|+
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 88865433222111 023344444444444444 345566666666666655554431 22334444
Q ss_pred eeccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 397 GLELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
+|++++|++++. .++.+++|+.|++++|+++
T Consensus 322 ~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 322 YLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEECTTCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred EEECCCCccccc---ccccCCcCcEEECCCCCCC
Confidence 555555555442 1444455555555555444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=292.20 Aligned_cols=311 Identities=16% Similarity=0.175 Sum_probs=272.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.+++.++++++.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46788999999887665666788999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 99999966556679999999999999999988888899999999999999999864 367789999999999999876
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
.. .+.|+.|++++|.++...+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+ ..+..+.
T Consensus 208 ~~-~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~ 275 (597)
T 3oja_B 208 AI-PIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK------IMYHPFV 275 (597)
T ss_dssp EC-CTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE------EESGGGT
T ss_pred cC-CchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC------CCHHHhc
Confidence 54 67899999999998754332 2 3689999999999986 4778999999999999999987 5567788
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|+.|++++|.+++ +|..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence 99999999999999985 565555555 9999999999998 5788889999999999999999854 3 677899999
Q ss_pred eccccccCcccC
Q 037538 398 LELNANKFSGFM 409 (461)
Q Consensus 398 L~L~~n~l~~~~ 409 (461)
|++++|++.+..
T Consensus 350 L~l~~N~~~~~~ 361 (597)
T 3oja_B 350 LTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCEEHHH
T ss_pred EEeeCCCCCChh
Confidence 999999998653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=267.91 Aligned_cols=303 Identities=25% Similarity=0.367 Sum_probs=233.7
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 678999999999864 44 48899999999999999984 555 9999999999999999984 44 6899999999999
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
++|.+.+. +. +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..+
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99998854 33 889999999999999766444 448899999999999999985433 77777777777776655432
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
. . +..+++|+++++++|.+.+..+ +..+++|++|++++|++++.. . +.
T Consensus 193 ~---------------------~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------~-~~ 240 (347)
T 4fmz_A 193 S---------------------P-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------P-LA 240 (347)
T ss_dssp G---------------------G-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------G-GT
T ss_pred c---------------------c-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------c-hh
Confidence 1 1 5566777777777777665433 666777777777777776521 1 56
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.+++|++|++++|.+++ + ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 67777778887777764 2 2344444 788888888887753 35778888999999999888888888888899999
Q ss_pred eccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
|++++|++++..| +..+++|+.|++++|+|+
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999886555 778889999999998875
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=279.37 Aligned_cols=325 Identities=22% Similarity=0.303 Sum_probs=161.6
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
+++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|++++ +| .++++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 44555555555543 3321 2455555555555542 2210 1355555555555553 44 35555555555555
Q ss_pred CCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc
Q 037538 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (461)
+|++++ +|.. ..+|++|++++|.+++ +| .+.++++|++|++++|.+++ +|.. .++|++|++++|.+..+.
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP 231 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc
Confidence 555543 3322 1355555555555553 33 34555555555555555543 2221 134555555555443322
Q ss_pred --cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 239 --LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 239 --~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
..+++|+.|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~--------- 294 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE--------- 294 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC---------
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC---------
Confidence 234455555555555543 2221 2455555555555543 2221 2456666666665554210
Q ss_pred cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 317 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
-.++|+.|++++|.+++ ++ ..+++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|+
T Consensus 295 -~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp -CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred -cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 11567777777777764 22 233489999999999986 5643 589999999999999 5676 478999
Q ss_pred eeccccccCcc--cCChhhhcC-------------ccCCeeecccccccc--cCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 397 GLELNANKFSG--FMPSSLGNL-------------TVLSRLLMEENRFEG--SIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 397 ~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.+.+|.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 99999999998 788888887 889999999999997 6665 456678899999888774
Q ss_pred C
Q 037538 460 E 460 (461)
Q Consensus 460 ~ 460 (461)
+
T Consensus 435 ~ 435 (454)
T 1jl5_A 435 A 435 (454)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=302.63 Aligned_cols=376 Identities=17% Similarity=0.103 Sum_probs=298.2
Q ss_pred CcEEEEEcCCCCcccccCcc-ccCCCCCCEEecCCCCCcc----cCchhccCCCCCCEEeCCCCCCCCCCCcCC-CCCC-
Q 037538 78 GRVTVLKLESKQLVGSIPAS-IGNLTNLTGINLFQNRFHG----QIPEEIGRLQKLQDLNLTYNYLSGKIPTNL-SHCT- 150 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~- 150 (461)
.++++|+++++.+....... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46899999999987554333 6789999999999999875 356778889999999999999875333222 2344
Q ss_pred ---CCCEEEccCCcCCC----cCchhhcCCCCCcEEEccCCCCcccCCccC-----CCCCCCCEEECccCCCcccC----
Q 037538 151 ---ELRSFEASANDFIG----QIPDQLISLTKLEIIRLGTSNLTGNIPAWV-----GNFSSLQVLLLARNNLHGSI---- 214 (461)
Q Consensus 151 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~---- 214 (461)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999884 568889999999999999999875443322 23568999999999998643
Q ss_pred ChhhhcCCCCcEEecCCCCchhhc---------cCCCCCcEEEccCccCccc----cChhhcCCCCCCEEEccccccccc
Q 037538 215 PNELGQLSALGFFTLYENFISDVG---------LTLPNLKIFAGGVNYFTGS----IPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~---------~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
+..+..+++|++|++++|.+.... ...++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 566778899999999999985432 2366999999999999874 577788899999999999998764
Q ss_pred C-----CccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc----cccccEEEc
Q 037538 282 I-----PENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL----STHLRILTM 352 (461)
Q Consensus 282 ~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~----~~~L~~L~l 352 (461)
. +..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+++..+..+... .++|++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 3 23344689999999999999863211 256778889999999999999986655555443 248999999
Q ss_pred cCCcCccc----CchhhhcCCCCCeeecccCcCccccchhhhc-----CCCCCeeccccccCcc----cCChhhhcCccC
Q 037538 353 GYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGSVPEVIGR-----LNKLEGLELNANKFSG----FMPSSLGNLTVL 419 (461)
Q Consensus 353 ~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L 419 (461)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99999865 5666778899999999999998765655543 6799999999999996 788899999999
Q ss_pred CeeecccccccccCCcc----C-CCCCCCCEEEccCCCCcc
Q 037538 420 SRLLMEENRFEGSIPPS----L-GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~----l-~~l~~L~~L~ls~N~l~~ 455 (461)
+.|++++|++++..... + .....|+.|++.++.+..
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999999998652222 2 124568888888887754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=274.02 Aligned_cols=272 Identities=21% Similarity=0.288 Sum_probs=167.3
Q ss_pred ccccCcHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCcceeeEEecC--------CCCcEEEEEcCCCCcccccCc
Q 037538 29 LESATIEADKLALLDFKNHLTQDPLQIMSSW----NDSVHFCNWVGVTCSP--------SNGRVTVLKLESKQLVGSIPA 96 (461)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~l~~~~~~ 96 (461)
+...+..+++.||++||..+..++.+....| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|.
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 4556778899999999998866776667788 4567899999999952 2256777777777776 6666
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC----
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS---- 172 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---- 172 (461)
.+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..++.
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 6777777777777777777 67777777777777777777776 66777777777777777777666666665543
Q ss_pred -----CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEE
Q 037538 173 -----LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIF 247 (461)
Q Consensus 173 -----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L 247 (461)
+++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|.
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~------------------------------- 223 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP------------------------------- 223 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-------------------------------
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-------------------------------
Confidence 555555555555554 444445555555555555555442 333
Q ss_pred EccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEc
Q 037538 248 AGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 327 (461)
Q Consensus 248 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 327 (461)
.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ .++..+.++++|+.|++
T Consensus 224 -------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 224 -------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL------TLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp -------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC------BCCTTGGGCTTCCEEEC
T ss_pred -------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh------hcchhhhcCCCCCEEeC
Confidence 34444444444444444444444444445555555555544443 33333444555555555
Q ss_pred cCCcCccccchHHHhccccccEEEccCCc
Q 037538 328 AQNGFGGEMPISIANLSTHLRILTMGYNL 356 (461)
Q Consensus 328 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 356 (461)
++|.+.+.+|..+..++ +++.+++..+.
T Consensus 285 ~~n~~~~~iP~~l~~L~-~L~~l~l~~~~ 312 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLP-ANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCCCCGGGGGSC-TTCEEECCGGG
T ss_pred CCCCchhhccHHHhhcc-CceEEeCCHHH
Confidence 55555555555555554 45555554443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.97 Aligned_cols=252 Identities=29% Similarity=0.502 Sum_probs=179.7
Q ss_pred CCCCEEEccCCcCCC--cCchhhcCCCCCcEEEccC-CCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcE
Q 037538 150 TELRSFEASANDFIG--QIPDQLISLTKLEIIRLGT-SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGF 226 (461)
Q Consensus 150 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 226 (461)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-------- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-------- 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--------
Confidence 456677777777766 6666777777777777764 66666666666666666666666666665555444
Q ss_pred EecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccC
Q 037538 227 FTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSRE 306 (461)
Q Consensus 227 L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 306 (461)
.++++|++|++++|.+++.+|..+..+++|++|++++|++++
T Consensus 122 ------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-- 163 (313)
T 1ogq_A 122 ------------------------------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-- 163 (313)
T ss_dssp ------------------------------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--
T ss_pred ------------------------------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--
Confidence 444455555555555555555555555555555555555544
Q ss_pred CCCchhhhhhcCCC-CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc
Q 037538 307 IGDLNFLKFLANCT-SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385 (461)
Q Consensus 307 ~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 385 (461)
.++..+..++ +|+.|++++|.+++.+|..+..+ .|++|++++|.+++..|..+..+++|+.|++++|.+++.+
T Consensus 164 ----~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 164 ----AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ----ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ----cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 3344445555 67777777777776777777666 3888888888888778888888888888888888888666
Q ss_pred chhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCC-Ccc
Q 037538 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN-LNG 455 (461)
Q Consensus 386 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~ 455 (461)
|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.. .++++|+.+++++|+ +.|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 65 777888999999999988888888888889999999999998888886 778888889999988 555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=259.44 Aligned_cols=289 Identities=18% Similarity=0.206 Sum_probs=186.0
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5667777776665 4554432 466777777777665555566666777777777766666556666666666666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.++ .+|..+. ++|++|++++|.+.+..+. .+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~--------------------------------------------~~ 141 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKS--------------------------------------------VF 141 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH--------------------------------------------HH
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHh--------------------------------------------Hh
Confidence 66665 3444332 4566666666655543333 34
Q ss_pred cCCCCCCEEEcccccccc--cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 263 SNASNLQVLDFAENGLTG--TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++..+. .+ .++|++|++++|.+++..+..+
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------GL--PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------SC--CTTCSEEECTTSCCCEECTGGG
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------cc--cccCCEEECCCCcCCccCHHHh
Confidence 444555555555554432 344455555556666665555553221 11 1567777777777766556666
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhc-----
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN----- 415 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~----- 415 (461)
..++ +|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 213 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 213 KGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred cCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 6665 7777777777777766667778888888888888887 67777888888888888888888665555543
Q ss_pred -CccCCeeecccccccc--cCCccCCCCCCCCEEEccCCC
Q 037538 416 -LTVLSRLLMEENRFEG--SIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 416 -l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.+.++.+++++|++.. ..|..+..+..++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678889999998853 456788888999999999885
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=296.64 Aligned_cols=352 Identities=18% Similarity=0.176 Sum_probs=282.4
Q ss_pred CCCCEEecCCCCCcccCch-hccCCCCCCEEeCCCCCCCC----CCCcCCCCCCCCCEEEccCCcCCCcCchhhc-CCC-
Q 037538 102 TNLTGINLFQNRFHGQIPE-EIGRLQKLQDLNLTYNYLSG----KIPTNLSHCTELRSFEASANDFIGQIPDQLI-SLT- 174 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~- 174 (461)
++|++|++++++++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5789999999999754333 37789999999999999874 3466788899999999999998765444443 355
Q ss_pred ---CCcEEEccCCCCcc----cCCccCCCCCCCCEEECccCCCcccCChhhhc-----CCCCcEEecCCCCchhh-----
Q 037538 175 ---KLEIIRLGTSNLTG----NIPAWVGNFSSLQVLLLARNNLHGSIPNELGQ-----LSALGFFTLYENFISDV----- 237 (461)
Q Consensus 175 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----- 237 (461)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 45788999999999999999998655544433 56899999999988642
Q ss_pred ---ccCCCCCcEEEccCccCccccChhhc-----CCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCccc
Q 037538 238 ---GLTLPNLKIFAGGVNYFTGSIPVSLS-----NASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 238 ---~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
...+++|+.|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23468999999999998866554443 367999999999999864 466778899999999999998763
Q ss_pred CCCCchh-hhhhcCCCCCCEEEccCCcCccc----cchHHHhccccccEEEccCCcCcccCchhhhcC-----CCCCeee
Q 037538 306 EIGDLNF-LKFLANCTSLEVLGLAQNGFGGE----MPISIANLSTHLRILTMGYNLMHGNIPVGIENL-----VNLSLLG 375 (461)
Q Consensus 306 ~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ 375 (461)
... .+ ...+..+++|+.|++++|.+++. ++..+...+ +|++|++++|.+.+..+..+... ++|++|+
T Consensus 243 ~~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 243 GMA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 211 11 22334689999999999999864 566666665 99999999999986555444432 6999999
Q ss_pred cccCcCccc----cchhhhcCCCCCeeccccccCcccCChhhhc-----CccCCeeecccccccc----cCCccCCCCCC
Q 037538 376 LEGNNLSGS----VPEVIGRLNKLEGLELNANKFSGFMPSSLGN-----LTVLSRLLMEENRFEG----SIPPSLGNCKK 442 (461)
Q Consensus 376 Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~ 442 (461)
+++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|+.|++++|++++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 999999875 5677788899999999999998766665553 6899999999999997 78888889999
Q ss_pred CCEEEccCCCCccc
Q 037538 443 LQVLNLSSNNLNGT 456 (461)
Q Consensus 443 L~~L~ls~N~l~~~ 456 (461)
|+.|++++|++++.
T Consensus 400 L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 400 LRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSSCCHH
T ss_pred ccEEECCCCCCCHH
Confidence 99999999999753
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=262.16 Aligned_cols=288 Identities=20% Similarity=0.203 Sum_probs=184.8
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4554442 466666666666664445556666666666666666665555666666666666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.++ .+|..+. ++|++|++++|.+.+..+ ..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~--------------------------------------------~~~ 143 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK--------------------------------------------GVF 143 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS--------------------------------------------GGG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCH--------------------------------------------hHh
Confidence 66655 3444333 455555555555553322 334
Q ss_pred cCCCCCCEEEccccccc--ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 263 SNASNLQVLDFAENGLT--GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
..+++|++|++++|.++ +..+..+..+ +|+.|++++|++++.+. .+ .++|++|++++|.+++..+..+
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-------DL--PETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------SS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-------cc--cCCCCEEECCCCcCCccCHHHh
Confidence 44555555555555553 2344455555 66666666666554221 11 1567777777777765555556
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhc-----
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN----- 415 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~----- 415 (461)
..++ +|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 214 ~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 214 LRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp TTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred cCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 6655 7788888888877766667788888888888888888 77777888888888888888888666666654
Q ss_pred -CccCCeeeccccccc--ccCCccCCCCCCCCEEEccCCC
Q 037538 416 -LTVLSRLLMEENRFE--GSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 416 -l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
.+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367889999999887 5667788889999999999885
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=253.17 Aligned_cols=286 Identities=19% Similarity=0.284 Sum_probs=197.5
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
.++++++.+. .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 35 ~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 35 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4445555554 4555443 789999999999997777789999999999999999998889999999999999999999
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc--cCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG--SIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 185 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--- 185 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---
Confidence 87 5666554 799999999999997777778999999999999999863 555666666666666666554432
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++.. +..+..+
T Consensus 186 ------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l 239 (330)
T 1xku_A 186 ------------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANT 239 (330)
T ss_dssp ------------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGS
T ss_pred ------------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCC
Confidence 222221 56777777777776666666666666666666666665421 2233444
Q ss_pred CCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh------cCC
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG------RLN 393 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~------~~~ 393 (461)
++|++|+++ +|.++ .+|..+..+++|++|++++|++++..+..|. ...
T Consensus 240 ~~L~~L~L~-------------------------~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 240 PHLRELHLN-------------------------NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TTCCEEECC-------------------------SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCEEECC-------------------------CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 445555554 44444 3444555556666666666666544333332 235
Q ss_pred CCCeeccccccCcc--cCChhhhcCccCCeeeccccc
Q 037538 394 KLEGLELNANKFSG--FMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 394 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+++.+++++|.+.. ..|..|..++.++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 67777777777752 455677777888888887774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=256.92 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=197.4
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccC
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 159 (461)
++.++++++++. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 456777777776 5666553 7999999999999977788899999999999999999987889999999999999999
Q ss_pred CcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc--cCChhhhcCCCCcEEecCCCCchhh
Q 037538 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG--SIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|++|++++|.+..
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9988 5666655 899999999999997666678999999999999999863 445555444 55555555544332
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+.
T Consensus 187 --------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------~~~~~~ 238 (332)
T 2ft3_A 187 --------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------ENGSLS 238 (332)
T ss_dssp --------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------CTTGGG
T ss_pred --------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------ChhHhh
Confidence 222222 5677777777777766666666666666666666666542 122344
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhc------
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR------ 391 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------ 391 (461)
.+++|+.|++++|+++ . +|..+..+++|+.|++++|++++..+..+..
T Consensus 239 ~l~~L~~L~L~~N~l~-~-------------------------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-R-------------------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp GCTTCCEEECCSSCCC-B-------------------------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCCCCCEEECCCCcCe-e-------------------------cChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 4455555555555444 3 4444555555555555555555443333332
Q ss_pred CCCCCeeccccccCc--ccCChhhhcCccCCeeeccccc
Q 037538 392 LNKLEGLELNANKFS--GFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 392 ~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
..+|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 345677777777765 4556667777777777777664
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=245.48 Aligned_cols=286 Identities=19% Similarity=0.237 Sum_probs=179.2
Q ss_pred CCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC
Q 037538 58 SWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY 137 (461)
Q Consensus 58 ~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 137 (461)
.|......|.|.++ |+ .++++++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 35556677888776 53 3456665 5666554 589999999999987666689999999999999999
Q ss_pred CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCc--cCCCCCCCCEEECccCC-CcccC
Q 037538 138 LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNN-LHGSI 214 (461)
Q Consensus 138 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~-~~~~~ 214 (461)
+++..|..+.++++|++|++++|++++..+..+.++++|++|++++|.+.+ +|. .+.++++|++|++++|. +.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC
Confidence 987777889999999999999999886555558889999999999998884 444 67788888888888874 44333
Q ss_pred ChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 037538 215 PNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVR 294 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 294 (461)
+..+.. +++|++|++++|.+++..|..+..+++|++
T Consensus 167 ~~~~~~--------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 167 RKDFAG--------------------------------------------LTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TTTTTT--------------------------------------------CCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred HHHccC--------------------------------------------CCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 333333 344444444444444444444444444444
Q ss_pred EEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH--hccccccEEEccCCcCcc----cCchhhhcC
Q 037538 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA--NLSTHLRILTMGYNLMHG----NIPVGIENL 368 (461)
Q Consensus 295 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~----~~p~~~~~l 368 (461)
|++++|+++. .....+..+++|+.|++++|.+++..+..+. .....++.++++++.+.+ .+|..+..+
T Consensus 203 L~l~~n~l~~------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 203 LILHMKQHIL------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEECSCSTT------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred ecCCCCcccc------chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 4444444432 1111222344455555555444432222211 111245555555555543 355566777
Q ss_pred CCCCeeecccCcCccccchh-hhcCCCCCeeccccccCcccC
Q 037538 369 VNLSLLGLEGNNLSGSVPEV-IGRLNKLEGLELNANKFSGFM 409 (461)
Q Consensus 369 ~~L~~L~Ls~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~~ 409 (461)
++|+.|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 77777777777777 44544 467777777777777776543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=242.40 Aligned_cols=254 Identities=18% Similarity=0.200 Sum_probs=144.7
Q ss_pred CCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecC
Q 037538 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY 230 (461)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 230 (461)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444443333344444444444444444444444444455555555555555543222224444444444443
Q ss_pred CCCchhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccc-cccccCCccCCCCCCCCEEEcccCcCcccCCC
Q 037538 231 ENFISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAEN-GLTGTIPENFGSLKDLVRLNFDQNELGSREIG 308 (461)
Q Consensus 231 ~n~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 308 (461)
+|.+..+ .+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++
T Consensus 133 ~n~l~~l--------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---- 188 (353)
T 2z80_A 133 GNPYKTL--------------------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---- 188 (353)
T ss_dssp TCCCSSS--------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----
T ss_pred CCCCccc--------------------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc----
Confidence 3332211 11 24667889999999998 4666667788889999999999998876
Q ss_pred CchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh---cCCCCCeeecccCcCcc--
Q 037538 309 DLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE---NLVNLSLLGLEGNNLSG-- 383 (461)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~-- 383 (461)
..+..+..+++|++|++++|.++ .+|..+....++|++|++++|.+++..+..+. ..+.++.++++++.+.+
T Consensus 189 --~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 189 --YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp --ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred --cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 34556777888888888888876 45554443334788888888887764443322 23455566666655544
Q ss_pred --ccchhhhcCCCCCeeccccccCcccCChh-hhcCccCCeeeccccccccc
Q 037538 384 --SVPEVIGRLNKLEGLELNANKFSGFMPSS-LGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 384 --~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 432 (461)
.+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|++++.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 24445555555555555555555 33333 35555555555555555543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=236.34 Aligned_cols=288 Identities=20% Similarity=0.227 Sum_probs=197.2
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCC--
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSG-- 140 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-- 140 (461)
.+.|.|.++.|... +++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.++.
T Consensus 4 ~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 34588988888642 232 3444332 688888998888884344457888889999998888772
Q ss_pred CCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChhhh
Q 037538 141 KIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNELG 219 (461)
Q Consensus 141 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 219 (461)
..+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence 23556667888999999888877 466678888999999999988885544 5678888999999999988877777777
Q ss_pred cCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 220 QLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 220 ~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
.+++|++|++++|.+... .+|..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 148 ~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQEN-------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp TCTTCCEEECTTCEEGGG-------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCcCCCEEECCCCccccc-------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 766666666666544320 2445566667777777777777766666777777777777777
Q ss_pred CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCc--hhhhcCCCCCeeecc
Q 037538 300 NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIP--VGIENLVNLSLLGLE 377 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~Ls 377 (461)
|++++.. ...+..+++|+.|++++|.+++..+..+..++++|++|++++|++++..+ .....+...+.+.+.
T Consensus 209 N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~ 282 (306)
T 2z66_A 209 NNFFSLD------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282 (306)
T ss_dssp SCCSBCC------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSC
T ss_pred CccCccC------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcc
Confidence 7776522 22355667777777777777766666666654477777777777765321 112223344455666
Q ss_pred cCcCccccchhhhc
Q 037538 378 GNNLSGSVPEVIGR 391 (461)
Q Consensus 378 ~n~l~~~~~~~l~~ 391 (461)
.+.+....|..+.+
T Consensus 283 ~~~~~C~~p~~~~g 296 (306)
T 2z66_A 283 VERMECATPSDKQG 296 (306)
T ss_dssp GGGCBEEESGGGTT
T ss_pred ccccccCCchhhCC
Confidence 66776666666554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-31 Score=275.25 Aligned_cols=372 Identities=13% Similarity=0.062 Sum_probs=214.8
Q ss_pred cEEEEEcCCCCcccccCccccC-C-CCCCEEecCCCC-Ccc-cCchhccCCCCCCEEeCCCCCCCCC----CCcCCCCCC
Q 037538 79 RVTVLKLESKQLVGSIPASIGN-L-TNLTGINLFQNR-FHG-QIPEEIGRLQKLQDLNLTYNYLSGK----IPTNLSHCT 150 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~-l-~~L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~ 150 (461)
++++|+++++.+.+..+..+.. + .+|++|++++|. +.. .++.....+++|++|++++|.+++. ++..+..++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 4555555555444333333332 1 225555555543 111 1112223455555555555554432 122233445
Q ss_pred CCCEEEccCCcCC----CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc---ccCChhhhcCCC
Q 037538 151 ELRSFEASANDFI----GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH---GSIPNELGQLSA 223 (461)
Q Consensus 151 ~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~ 223 (461)
+|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+.++++|++|+++..... +..+..+..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 5555555555544 1223333445555555555555442 3444445555555555432211 122233444555
Q ss_pred CcEEecCCCC---chhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 037538 224 LGFFTLYENF---ISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 224 L~~L~l~~n~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
|+.+.++++. +......+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 5555554432 23333456678888888877655433 3456778888888874433333344445677888888883
Q ss_pred -----------CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEcc----CCcCccc----
Q 037538 300 -----------NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMG----YNLMHGN---- 360 (461)
Q Consensus 300 -----------n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~---- 360 (461)
+.+++. .+......+++|+.|+++.+.+++..+..+....++|+.|+++ .|.+++.
T Consensus 352 g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp CCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred CccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 445431 2334455688888888888888877777776633488888886 5566642
Q ss_pred -CchhhhcCCCCCeeecccCc--Cccccchhhh-cCCCCCeeccccccCccc-CChhhhcCccCCeeeccccccccc-CC
Q 037538 361 -IPVGIENLVNLSLLGLEGNN--LSGSVPEVIG-RLNKLEGLELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGS-IP 434 (461)
Q Consensus 361 -~p~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p 434 (461)
++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|+.|++++|++++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 34446678888888887543 6655555554 378899999998888763 344557788899999999888755 33
Q ss_pred ccCCCCCCCCEEEccCCCCccc
Q 037538 435 PSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 435 ~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
.....+++|+.|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 4445688899999999988754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=235.64 Aligned_cols=232 Identities=21% Similarity=0.263 Sum_probs=113.1
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
.+++|++++|.++ .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444443 33444444444444444444444 34444444444444444444444 344444444455555555
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccC
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENF 286 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 286 (461)
+|.+.+.+|..+... .++..+..+++|++|++++|.++ .+|..+
T Consensus 159 ~n~~~~~~p~~~~~~-----------------------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l 202 (328)
T 4fcg_A 159 ACPELTELPEPLAST-----------------------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASI 202 (328)
T ss_dssp EETTCCCCCSCSEEE-----------------------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGG
T ss_pred CCCCccccChhHhhc-----------------------------------cchhhhccCCCCCEEECcCCCcC-cchHhh
Confidence 544444444332210 01112344566666666666665 455555
Q ss_pred CCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh
Q 037538 287 GSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
..+++|++|++++|++++ ++..+..+++|++|++++| .+.+.+|..+.
T Consensus 203 ~~l~~L~~L~L~~N~l~~-------l~~~l~~l~~L~~L~Ls~n-------------------------~~~~~~p~~~~ 250 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-------LGPAIHHLPKLEELDLRGC-------------------------TALRNYPPIFG 250 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-------CCGGGGGCTTCCEEECTTC-------------------------TTCCBCCCCTT
T ss_pred cCCCCCCEEEccCCCCCc-------CchhhccCCCCCEEECcCC-------------------------cchhhhHHHhc
Confidence 555555555555555542 1122334444444444444 44444444455
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
.+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|+.++++++|+.+++..+.+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 555555555555555555555555555555555555555555555555555555555554443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=230.10 Aligned_cols=248 Identities=20% Similarity=0.219 Sum_probs=156.5
Q ss_pred CEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCC--cCchhhcCCCCCcEEEcc
Q 037538 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIG--QIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 105 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~ 182 (461)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 56777787777 5665443 588899999998884333457888899999999888763 336677788888888888
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
+|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++ +|+.|++++|.+++..+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR--------------------NLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT--------------------TCCEEECTTSCCEECSTTT
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc--------------------CCCEEECCCCcCCccchhh
Confidence 88877 466667778888888888887774433 2343333 3444444444444455556
Q ss_pred hcCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHH
Q 037538 262 LSNASNLQVLDFAENGLTG-TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISI 340 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 340 (461)
+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.+++..+..+
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------cCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 6667777777777777765 456666667777777777766665 223344555666666666666554333333
Q ss_pred HhccccccEEEccCCcCcccCchhhhcCC-CCCeeecccCcCcc
Q 037538 341 ANLSTHLRILTMGYNLMHGNIPVGIENLV-NLSLLGLEGNNLSG 383 (461)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~ 383 (461)
..++ +|++|++++|.+++..|..+..++ +|+.|++++|.+.+
T Consensus 220 ~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 KCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCT-TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCcc-cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 3333 455555555555544444444442 45555555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=221.43 Aligned_cols=226 Identities=21% Similarity=0.214 Sum_probs=172.5
Q ss_pred EEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 81 TVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 81 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 455433 478999999999998777778899999999999999998777888999999999999999
Q ss_pred c-CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 161 D-FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 161 ~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
. +....|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----- 165 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----- 165 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-----
Confidence 7 6666678888999999999999999877778888889999999999988865555566655555555555443
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ..+..+..+
T Consensus 166 ---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l 224 (285)
T 1ozn_A 166 ---------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------LPTEALAPL 224 (285)
T ss_dssp ---------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------CCHHHHTTC
T ss_pred ---------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc------CCHHHcccC
Confidence 33333456677788888888888877777777778888888888887775 333456677
Q ss_pred CCCCEEEccCCcCccc
Q 037538 320 TSLEVLGLAQNGFGGE 335 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~ 335 (461)
++|+.|++++|.+...
T Consensus 225 ~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cccCEEeccCCCccCC
Confidence 7777777777776643
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=222.08 Aligned_cols=225 Identities=22% Similarity=0.210 Sum_probs=116.8
Q ss_pred CEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 105 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 445433 346666666666666544455666666666666666666555566666666666666666
Q ss_pred C-CcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 185 N-LTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 185 ~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
. +....+..+..+++|++|++++|.+.+..+. .+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------~~~ 126 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG--------------------------------------------LFR 126 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------------------------------------------TTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHh--------------------------------------------Hhh
Confidence 5 4443355555556666666666555543333 333
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.+++|++|++++|.+++..+..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..|..+..+
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 4444555555555444443344444455555555554444311 1123334444444444444443334333333
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcc
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 383 (461)
+ +|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 201 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 201 G-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp T-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred c-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 3 44445555554444333445555555555555555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-30 Score=264.17 Aligned_cols=371 Identities=15% Similarity=0.155 Sum_probs=278.4
Q ss_pred CcEEEEEcCCCCcc---cccCcccc------------CCCCCCEEecCCCCCcccCchhccC-C-CCCCEEeCCCCC-CC
Q 037538 78 GRVTVLKLESKQLV---GSIPASIG------------NLTNLTGINLFQNRFHGQIPEEIGR-L-QKLQDLNLTYNY-LS 139 (461)
Q Consensus 78 ~~v~~L~l~~~~l~---~~~~~~l~------------~l~~L~~L~L~~n~~~~~~~~~l~~-l-~~L~~L~Ls~n~-l~ 139 (461)
+++++|+++++... +.+|...+ .+++|++|++++|.+++..+..+.. + .+|++|++++|. +.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 56888998775431 22222222 6899999999999888766666665 3 349999999886 22
Q ss_pred C-CCCcCCCCCCCCCEEEccCCcCCCc----CchhhcCCCCCcEEEccCCCCc----ccCCccCCCCCCCCEEECccCCC
Q 037538 140 G-KIPTNLSHCTELRSFEASANDFIGQ----IPDQLISLTKLEIIRLGTSNLT----GNIPAWVGNFSSLQVLLLARNNL 210 (461)
Q Consensus 140 ~-~~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~ 210 (461)
. .++.....+++|++|++++|.+++. ++....++++|++|++++|.++ +.++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1223334789999999999988665 4445677899999999999987 33445566789999999999998
Q ss_pred cccCChhhhcCCCCcEEecCCCCch-------hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCC
Q 037538 211 HGSIPNELGQLSALGFFTLYENFIS-------DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP 283 (461)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 283 (461)
.+ ++..+..+++|+.|+++..... .....+++|+.+.++.+ ..+.+|..+..+++|++|++++|.+++...
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 85 7788999999999999753221 12244678999999875 344577778889999999999998765543
Q ss_pred -ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC-----------CcCccccchHHHhccccccEEE
Q 037538 284 -ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ-----------NGFGGEMPISIANLSTHLRILT 351 (461)
Q Consensus 284 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------n~~~~~~~~~~~~~~~~L~~L~ 351 (461)
..+..+++|++|+++ +.+... .+......+++|++|++++ +.+++.....+....++|++|+
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~-----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDR-----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHH-----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHhCcCCCEEecc-CccCHH-----HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 346889999999999 444431 4555567889999999993 5666543333333234999999
Q ss_pred ccCCcCcccCchhhhc-CCCCCeeecc----cCcCccc-----cchhhhcCCCCCeecccccc--CcccCChhhhc-Ccc
Q 037538 352 MGYNLMHGNIPVGIEN-LVNLSLLGLE----GNNLSGS-----VPEVIGRLNKLEGLELNANK--FSGFMPSSLGN-LTV 418 (461)
Q Consensus 352 l~~n~l~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~l~~~~~L~~L~L~~n~--l~~~~~~~~~~-l~~ 418 (461)
+..+.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+..+.. +++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 9999998877777765 8999999997 6677753 55557789999999998654 77666666654 899
Q ss_pred CCeeecccccccc-cCCccCCCCCCCCEEEccCCCCccc
Q 037538 419 LSRLLMEENRFEG-SIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 419 L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
|+.|++++|++++ .++..+..+++|+.|++++|++++.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 9999999999987 4455668899999999999998653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=244.18 Aligned_cols=287 Identities=22% Similarity=0.283 Sum_probs=177.0
Q ss_pred CCCCCCCCCCcceeeEEe------cCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCC
Q 037538 56 MSSWNDSVHFCNWVGVTC------SPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQ 129 (461)
Q Consensus 56 ~~~w~~~~~~c~w~gv~c------~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 129 (461)
+..|....++|.|.+..+ ......++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 455766778899866432 111135889999999987 6777665 78999999999988 5665 578899
Q ss_pred EEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC
Q 037538 130 DLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN 209 (461)
Q Consensus 130 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (461)
+|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|.
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence 9999999887 5665 67889999999998875 444 56788999999988884 5553 4788888888888
Q ss_pred CcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCC
Q 037538 210 LHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSL 289 (461)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 289 (461)
+++ +|. .+++|+.|++++|.+..+...+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+
T Consensus 153 l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~ 220 (622)
T 3g06_A 153 LAS-LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LP 220 (622)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CC
T ss_pred CCC-cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CC
Confidence 874 343 2456777777777666655545556666666655553 2221 2455555555555542 222 12
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCC
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV 369 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 369 (461)
++|+.|++++|++++.+ ..+++|+.|++++|+++ .+|. ..++|+.|++++|.++ .+|..+..++
T Consensus 221 ~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 45555555555554321 12344555555555544 2332 1124445555555444 3344444444
Q ss_pred CCCeeecccCcCccccchhh
Q 037538 370 NLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~~~l 389 (461)
+|+.|+|++|.+++..|..+
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHH
Confidence 55555555555444444433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=230.06 Aligned_cols=233 Identities=21% Similarity=0.183 Sum_probs=172.8
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.+
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 3444333 57777788777777666777777777888888777777666677777777888888777777655566777
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVG--LTLPNLKIFAG 249 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l 249 (461)
+++|++|++++|.+....+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 7778888888777775555567777778888877744333333 35677777777777777775543 34667888888
Q ss_pred cCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++..+ +..+..+++|+.|++++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCS
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC------hHHhccccCCCEEEccC
Confidence 888888877888888888888888888888888888888888888888888887632 33456778888888888
Q ss_pred CcCc
Q 037538 330 NGFG 333 (461)
Q Consensus 330 n~~~ 333 (461)
|.+.
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 8765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-29 Score=236.48 Aligned_cols=268 Identities=18% Similarity=0.203 Sum_probs=180.8
Q ss_pred CCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCC-cccCchhcc-------CCCCC
Q 037538 57 SSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRF-HGQIPEEIG-------RLQKL 128 (461)
Q Consensus 57 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~-~~~~~~~l~-------~l~~L 128 (461)
..|.....|+.+..+.......+++.++++++.+ .+|..+... |++|++++|.+ .+.+|..+. .+++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 4565544555555443322225677778888888 667655544 88899999988 446776665 78999
Q ss_pred CEEeCCCCCCCCCCCcCC--CCCCCCCEEEccCCcCCCcCchhhcCC-----CCCcEEEccCCCCcccCCccCCCCCCCC
Q 037538 129 QDLNLTYNYLSGKIPTNL--SHCTELRSFEASANDFIGQIPDQLISL-----TKLEIIRLGTSNLTGNIPAWVGNFSSLQ 201 (461)
Q Consensus 129 ~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (461)
++|++++|.+++.+|..+ ..+++|++|++++|++++. |..++++ ++|++|++++|.+.+..+..+.++++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 999999999998888876 8899999999999999876 7777776 8999999999999877778899999999
Q ss_pred EEECccCCCccc--CChhh--hcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEcccc
Q 037538 202 VLLLARNNLHGS--IPNEL--GQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAEN 276 (461)
Q Consensus 202 ~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n 276 (461)
+|++++|++.+. .+..+ ..+++|++|++++|.+..+. .++ ..+..+++|++|++++|
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------------------GVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------------------HHHHHHHHTTCCCSEEECTTS
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------------------HHHHHHHhcCCCCCEEECCCC
Confidence 999999988754 23333 66667777777666654221 111 22344556666666666
Q ss_pred cccccCC-ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCC
Q 037538 277 GLTGTIP-ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYN 355 (461)
Q Consensus 277 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n 355 (461)
.+++..| ..+..+++|++|++++|+++.. +..+. ++|++|++++|++++. |. +..++ +|++|++++|
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N 306 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGN 306 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTC
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCC
Confidence 6655443 3344556666666666666532 11122 5666666666666643 43 44444 6666777666
Q ss_pred cCcc
Q 037538 356 LMHG 359 (461)
Q Consensus 356 ~l~~ 359 (461)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=233.90 Aligned_cols=269 Identities=23% Similarity=0.277 Sum_probs=204.1
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999998 7887665 79999999999998 6666 5789999999999987 4565 7799999999
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChh
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 261 (461)
++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+..+...+++|+.|++++|.+++ +|
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc--
Confidence 9999884 555 56889999999999884 5543 478889999998888776667788888888888775 44
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
..+++|++|++++|.+++ +|. .+++|+.|++++|.++..+. .+++|+.|++++|.+++ +|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls~N~L~~-lp---- 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS-LP---- 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSC-CC----
T ss_pred -ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----------CCCCCCEEEccCCccCc-CC----
Confidence 445788888888888774 333 24678888888887775321 23678888888887774 44
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCc
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 417 (461)
...++|++|++++|.+++ +|. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 122377888888887773 554 5577778888888777 6677777778888888888887777776665443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=227.62 Aligned_cols=233 Identities=20% Similarity=0.208 Sum_probs=158.4
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|+++...+..+..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 3444333 56667777777766555566666777777777777666555566666777777777777666555555666
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC-hhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEc
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP-NELGQLSALGFFTLYENFISDVG--LTLPNLKIFAG 249 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l 249 (461)
+++|++|++++|.+....+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence 7777777777776665555566666777777776643332333 35666666677776666665443 33567777777
Q ss_pred cCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC
Q 037538 250 GVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ 329 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 329 (461)
++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|+|++|+++..+ +..+..+++|+.|++++
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP------HDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC------TTTTSSCTTCCEEECCS
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC------hhHhccccCCCEEEcCC
Confidence 777777777777888888888888888888777778888888888888888887632 34456778888888888
Q ss_pred CcCc
Q 037538 330 NGFG 333 (461)
Q Consensus 330 n~~~ 333 (461)
|.+.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8764
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=229.64 Aligned_cols=246 Identities=19% Similarity=0.213 Sum_probs=145.6
Q ss_pred CCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCC
Q 037538 152 LRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYE 231 (461)
Q Consensus 152 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 231 (461)
.+.++.++..++ .+|..+. +++++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-- 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-- 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC--
Confidence 456777766665 4665544 57888888888888777777888888888888888887665555555444333333
Q ss_pred CCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccC-cCcccCCCCc
Q 037538 232 NFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN-ELGSREIGDL 310 (461)
Q Consensus 232 n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 310 (461)
++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++| .+...
T Consensus 131 ------------------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i----- 187 (452)
T 3zyi_A 131 ------------------FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI----- 187 (452)
T ss_dssp ------------------CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----
T ss_pred ------------------CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----
Confidence 334444344445666677777777777666555556666666666666663 23221
Q ss_pred hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhh
Q 037538 311 NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIG 390 (461)
Q Consensus 311 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 390 (461)
....+.++++|+.|++++|+++ + +| .+..+++|+.|+|++|.+++..|..+.
T Consensus 188 -~~~~~~~l~~L~~L~L~~n~l~-------------------------~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 188 -SEGAFEGLFNLKYLNLGMCNIK-------------------------D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCS-------------------------S-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred -ChhhccCCCCCCEEECCCCccc-------------------------c-cc-cccccccccEEECcCCcCcccCccccc
Confidence 1123444555555555555554 2 22 244455555555555555555555555
Q ss_pred cCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCC
Q 037538 391 RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 391 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 453 (461)
++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 555555555555555555555555555666666666655544444555555666666666554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-28 Score=232.66 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=147.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcC-CCcCchhhc-------CCCCCcEEEccCCCCcccCCccC
Q 037538 123 GRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDF-IGQIPDQLI-------SLTKLEIIRLGTSNLTGNIPAWV 194 (461)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l 194 (461)
+..++|++|++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666665 445444332 56666666665 234555554 67788888888888877777765
Q ss_pred --CCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEE
Q 037538 195 --GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD 272 (461)
Q Consensus 195 --~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 272 (461)
..+++|++|++++|.+++. |..++.+.. ..+++|++|+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~---------------------------------------~~~~~L~~L~ 155 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQ---------------------------------------WLKPGLKVLS 155 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHT---------------------------------------TCCTTCCEEE
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHH---------------------------------------hhcCCCcEEE
Confidence 7778888888888888755 554443211 0125666666
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh--cCCCCCCEEEccCCcCcc--ccchHHHhcccccc
Q 037538 273 FAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL--ANCTSLEVLGLAQNGFGG--EMPISIANLSTHLR 348 (461)
Q Consensus 273 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~~L~ 348 (461)
+++|.+++..+..+..+++|++|++++|++.+.. ..+..+ ..+++|++|++++|++++ .++..
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------- 222 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER----GLISALCPLKFPTLQVLALRNAGMETPSGVCSA--------- 222 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH----HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH---------
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCCCcCcch----HHHHHHHhccCCCCCEEECCCCcCcchHHHHHH---------
Confidence 6666666666666666777777777776654310 122233 566677777777776652 11111
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-hhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
.+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|
T Consensus 223 ---------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 223 ---------------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp ---------------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred ---------------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 12234444555555555444332 22333455555555555555 4454443 56666666666
Q ss_pred cccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 428 RFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 428 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
++++. |. +..+++|+.|++++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66643 44 5666666666666666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=231.51 Aligned_cols=267 Identities=17% Similarity=0.180 Sum_probs=167.5
Q ss_pred CCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECcc
Q 037538 128 LQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR 207 (461)
Q Consensus 128 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (461)
++..+++.+.+...+...+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566665543333344456677888888887777666777777778888887777775443 66777777777777
Q ss_pred CCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC
Q 037538 208 NNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG 287 (461)
Q Consensus 208 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 287 (461)
|.+++.. ..++|++|++++|.+ ++..+. .+++|++|++++|.+++..+..+.
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l--------------------~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNI--------------------SRVSCS---RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCC--------------------SEEEEC---CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred Ccccccc-----CCCCcCEEECCCCcc--------------------CCcCcc---ccCCCCEEECCCCCCCCccchhhh
Confidence 7766321 224555555555544 433222 235566666666666665555666
Q ss_pred CCCCCCEEEcccCcCcccCCCCchhhhhh-cCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh
Q 037538 288 SLKDLVRLNFDQNELGSREIGDLNFLKFL-ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
.+++|++|++++|.+++. .+..+ ..+++|++|++++|.+++. +... .+ ++|++|++++|.+++. |..+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~-~l-~~L~~L~Ls~N~l~~l-~~~~~ 211 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQYNFIYDV-KGQV-VF-AKLKTLDLSSNKLAFM-GPEFQ 211 (317)
T ss_dssp GGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECTTSCCCEE-ECCC-CC-TTCCEEECCSSCCCEE-CGGGG
T ss_pred ccCCCCEEECCCCCCCcc------cHHHHhhccCcCCEEECCCCcCccc-cccc-cc-ccCCEEECCCCcCCcc-hhhhc
Confidence 666666666666666552 12222 3456677777777666533 2211 22 3677777777777753 33467
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChhhhcCccCCeeecccc-cccccCCc
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSSLGNLTVLSRLLMEEN-RFEGSIPP 435 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~ 435 (461)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.+++++| .++|..|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 7777777777777777 46666777777777777777777 666777777777777777743 45555444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=225.93 Aligned_cols=236 Identities=21% Similarity=0.187 Sum_probs=208.3
Q ss_pred eeeEEecCC---------CCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCC
Q 037538 68 WVGVTCSPS---------NGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYL 138 (461)
Q Consensus 68 w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (461)
|..+.|... ...++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456677532 25689999999999988889999999999999999999987888999999999999999999
Q ss_pred CCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEECccCCCcccCChh
Q 037538 139 SGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP-AWVGNFSSLQVLLLARNNLHGSIPNE 217 (461)
Q Consensus 139 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 217 (461)
++..+..+..+++|++|++++|.+....+..+.++++|++|++++|+..+.++ ..+.++++|++|++++|.++ .+| .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 96666689999999999999999997777789999999999999965444444 47889999999999999998 455 5
Q ss_pred hhcCCCCcEEecCCCCchhh----ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCC
Q 037538 218 LGQLSALGFFTLYENFISDV----GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLV 293 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 293 (461)
+..+++|+.|++++|.+..+ ...+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 88999999999999998654 35688999999999999998899999999999999999999988888899999999
Q ss_pred EEEcccCcCccc
Q 037538 294 RLNFDQNELGSR 305 (461)
Q Consensus 294 ~L~L~~n~l~~~ 305 (461)
.|++++|.+...
T Consensus 283 ~L~L~~Np~~Cd 294 (440)
T 3zyj_A 283 RIHLHHNPWNCN 294 (440)
T ss_dssp EEECCSSCEECS
T ss_pred EEEcCCCCccCC
Confidence 999999988653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-28 Score=230.75 Aligned_cols=267 Identities=17% Similarity=0.187 Sum_probs=160.7
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccC
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 159 (461)
....+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555543333333445566666666666665555566666666666666666653332 55566666666666
Q ss_pred CcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhcc
Q 037538 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGL 239 (461)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 239 (461)
|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.++
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~---------------------------- 133 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT---------------------------- 133 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC----------------------------
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC----------------------------
Confidence 655421 1224555555555555432222 1334444444444444
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccC-CCCCCCCEEEcccCcCcccCCCCchhhhhhcC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENF-GSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 318 (461)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.. ....
T Consensus 134 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~ 189 (317)
T 3o53_A 134 ----------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVV 189 (317)
T ss_dssp ----------------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCC
T ss_pred ----------------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccc
Confidence 3333344555666666666666665555544 35666777777777665431 1223
Q ss_pred CCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCe
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEG 397 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~ 397 (461)
+++|++|++++|++++ +|..+..++ +|++|++++|.+++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 6777888888887774 444466655 88888888888874 6777888889999999999988 677888888889999
Q ss_pred eccccc-cCcccCCh
Q 037538 398 LELNAN-KFSGFMPS 411 (461)
Q Consensus 398 L~L~~n-~l~~~~~~ 411 (461)
+++.++ .+.+..|.
T Consensus 267 l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 267 VAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHSSSSC
T ss_pred EECCCchhccCCchh
Confidence 998854 34554443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-29 Score=256.86 Aligned_cols=369 Identities=15% Similarity=0.129 Sum_probs=234.5
Q ss_pred CcEEEEEcCCCCcccccCcccc-CCCCCCEEecCCC-CCccc-CchhccCCCCCCEEeCCCCCCCCCCCc----CCCCCC
Q 037538 78 GRVTVLKLESKQLVGSIPASIG-NLTNLTGINLFQN-RFHGQ-IPEEIGRLQKLQDLNLTYNYLSGKIPT----NLSHCT 150 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~ 150 (461)
.++++|+++++.+.+..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+. ....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4567777777766655544443 4677777777776 44322 333344677777777777765543322 223566
Q ss_pred CCCEEEccCCc--CCC-cCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCC-------CcccCChhhhc
Q 037538 151 ELRSFEASAND--FIG-QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNN-------LHGSIPNELGQ 220 (461)
Q Consensus 151 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~ 220 (461)
+|++|++++|. +.. .++..+.++++|++|++++|...+.++..+.++++|++|+++.+. +. .++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhc
Confidence 77777777665 211 111223446777777777763222355556666777777755443 12 23335566
Q ss_pred CCCCcEE-ecCCCC---chhhccCCCCCcEEEccCccCccccC-hhhcCCCCCCEEEccccccccc-CCccCCCCCCCCE
Q 037538 221 LSALGFF-TLYENF---ISDVGLTLPNLKIFAGGVNYFTGSIP-VSLSNASNLQVLDFAENGLTGT-IPENFGSLKDLVR 294 (461)
Q Consensus 221 l~~L~~L-~l~~n~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 294 (461)
+++|+.+ .+.... +..+...+++|+.|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 6666666 333322 22222346889999999988765433 33567889999999888 4322 2223345788999
Q ss_pred EEccc---------CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEcc--C----CcCcc
Q 037538 295 LNFDQ---------NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMG--Y----NLMHG 359 (461)
Q Consensus 295 L~L~~---------n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~ 359 (461)
|++.+ +.+++. ........+++|+.|.++.+.+++.....+....++|+.|+++ + +.+++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~-----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQ-----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHH-----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEEecCcccccccCCCCCHH-----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 98844 344331 2223334588999998888888876666665433489999998 3 44542
Q ss_pred -----cCchhhhcCCCCCeeecccCcCccccchhhhc-CCCCCeeccccccCcccCChhh-hcCccCCeeeccccccccc
Q 037538 360 -----NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGR-LNKLEGLELNANKFSGFMPSSL-GNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 360 -----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~ 432 (461)
.++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 1223366788999999977 676665556655 8889999999999877666555 6689999999999998765
Q ss_pred CCc-cCCCCCCCCEEEccCCCCc
Q 037538 433 IPP-SLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 433 ~p~-~l~~l~~L~~L~ls~N~l~ 454 (461)
.+. ....+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 444 4455889999999999874
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=204.31 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=157.1
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
.++|.|.|+.|.-. ..++.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999988643 45678999999887 4666554 68999999999998666668889999999999999988555
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55568899999999999988876666778888999999998888876667778888888888888888754444455544
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcC
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 302 (461)
+|++|++++| .+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n--------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNN--------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSS--------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCC--------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4444444433 33333334455566666666666666655555566666666666666655
Q ss_pred cc
Q 037538 303 GS 304 (461)
Q Consensus 303 ~~ 304 (461)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 43
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=231.92 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC-CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG-SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
+|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.+ ....+++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------~~~~l~~ 192 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAK 192 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTT
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------ccccCCC
Confidence 333444444444444444455556666666666666655555543 4566666666666665421 1223556
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCc-cccchhhhcCCCCCeecc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLS-GSVPEVIGRLNKLEGLEL 400 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L 400 (461)
|+.|++++|.+++ +|..+..++ +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 193 L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 193 LKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 6666666666654 333344443 66666666666664 4555666666666666666665 455555666666666665
Q ss_pred c
Q 037538 401 N 401 (461)
Q Consensus 401 ~ 401 (461)
.
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=228.09 Aligned_cols=234 Identities=19% Similarity=0.219 Sum_probs=152.6
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYF 254 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~ 254 (461)
+|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+..+.. .++|+.|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-GPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-CTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-CCCcCEEECcCCcC
Confidence 44444554444444334444444555555555554443332 4444445555555444443332 35666667777766
Q ss_pred ccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc-CCCCCCEEEccCCcCc
Q 037538 255 TGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA-NCTSLEVLGLAQNGFG 333 (461)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~L~~n~~~ 333 (461)
++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++ ..+..+. .+++|+.|++++|.++
T Consensus 112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------EEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------cChHHHhhhCCcccEEecCCCccc
Confidence 655443 34778888888888888777788888888888888888876 3334443 6788888888888887
Q ss_pred cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc-ccCChh
Q 037538 334 GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS-GFMPSS 412 (461)
Q Consensus 334 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~ 412 (461)
+..+. ..+ ++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 183 ~~~~~--~~l-~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKGQ--VVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEECC--CCC-TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--ccC-CCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 54221 123 378888888888876444 47777888888888888874 6777777788888888888877 566677
Q ss_pred hhcCccCCeeecc
Q 037538 413 LGNLTVLSRLLME 425 (461)
Q Consensus 413 ~~~l~~L~~L~l~ 425 (461)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 7777777777775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=202.73 Aligned_cols=208 Identities=22% Similarity=0.246 Sum_probs=152.3
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L 322 (461)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+.++++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL------ALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc------ChhhhcCCccc
Confidence 466666666766665555677777888888888877766666777778888888888877762 33456677788
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCccc-CchhhhcCCCCCeeecccCcCccccchhhhcCCCCC----e
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN-IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE----G 397 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~----~ 397 (461)
++|++++|.+++..+..+..++ +|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 8888888877755444555555 788888888887753 577788888888888888888876666676666666 7
Q ss_pred eccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 398 LELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
|++++|++++..+..+. ..+|+.|++++|++++..+..+.++++|+.|++++|++.+..|
T Consensus 182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 88888888865554443 4478888888888886655667888888888888888887665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-27 Score=243.99 Aligned_cols=370 Identities=15% Similarity=0.120 Sum_probs=261.9
Q ss_pred CcEEEEEcCCCCccccc---C------------ccccCCCCCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCC-CCCC
Q 037538 78 GRVTVLKLESKQLVGSI---P------------ASIGNLTNLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYN-YLSG 140 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~---~------------~~l~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~ 140 (461)
++++.++++++...... | .....+++|++|++++|.+++..+..+. .+++|++|++++| .+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 56788888876532211 1 1124678899999999988876666665 6889999999988 4432
Q ss_pred C-CCcCCCCCCCCCEEEccCCcCCCcCchhhc----CCCCCcEEEccCCC--Cccc-CCccCCCCCCCCEEECccCCCcc
Q 037538 141 K-IPTNLSHCTELRSFEASANDFIGQIPDQLI----SLTKLEIIRLGTSN--LTGN-IPAWVGNFSSLQVLLLARNNLHG 212 (461)
Q Consensus 141 ~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~~~~ 212 (461)
. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +... ++....++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 1 344445788999999999887665444443 66789999999886 2211 11223456899999999884444
Q ss_pred cCChhhhcCCCCcEEecCCCCc----------hhhccCCCCCcEEE-ccCccCccccChhhcCCCCCCEEEccccccccc
Q 037538 213 SIPNELGQLSALGFFTLYENFI----------SDVGLTLPNLKIFA-GGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l----------~~~~~~l~~L~~L~-l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
.++..+..+++|+.|+++.+.. ......+++|+.+. +... ..+.++..+..+++|++|++++|.+++.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 4777888889999998765532 11224577888883 3322 2234555556789999999999987654
Q ss_pred CC-ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccC---------CcCccccchHHHhccccccEEE
Q 037538 282 IP-ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQ---------NGFGGEMPISIANLSTHLRILT 351 (461)
Q Consensus 282 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~---------n~~~~~~~~~~~~~~~~L~~L~ 351 (461)
.. ..+..+++|++|++++| ++.. .+......+++|++|++++ +.+++.....+....++|++|.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~-----~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDA-----GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHH-----HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHH-----HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 33 33678899999999988 4431 3444455689999999943 4555444444444234999999
Q ss_pred ccCCcCcccCchhhh-cCCCCCeeecc--c----CcCcc-----ccchhhhcCCCCCeeccccccCcccCChhhhc-Ccc
Q 037538 352 MGYNLMHGNIPVGIE-NLVNLSLLGLE--G----NNLSG-----SVPEVIGRLNKLEGLELNANKFSGFMPSSLGN-LTV 418 (461)
Q Consensus 352 l~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~-----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~ 418 (461)
+..+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 998998876655554 58999999999 4 45552 2333467889999999987 777666667766 899
Q ss_pred CCeeecccccccccCCccC-CCCCCCCEEEccCCCCcc
Q 037538 419 LSRLLMEENRFEGSIPPSL-GNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ls~N~l~~ 455 (461)
|+.|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 9999999999987666555 668999999999999864
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=217.10 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=95.9
Q ss_pred CCCCEEEcccccccccCC----ccCCCCC-CCCEEEcccCcCcccCCCCchhhhhhcCC-CCCCEEEccCCcCccc----
Q 037538 266 SNLQVLDFAENGLTGTIP----ENFGSLK-DLVRLNFDQNELGSREIGDLNFLKFLANC-TSLEVLGLAQNGFGGE---- 335 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~---- 335 (461)
++|++|++++|.+++..+ ..+..++ +|++|++++|++++.... .+...+..+ ++|++|++++|.+++.
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 688888888888875433 3344454 888888888888763322 334455566 4888888888888753
Q ss_pred cchHHHhccccccEEEccCCcCcccCch----hhhcCCCCCeeecccCcCccc-------cchhhhcCCCCCeecccccc
Q 037538 336 MPISIANLSTHLRILTMGYNLMHGNIPV----GIENLVNLSLLGLEGNNLSGS-------VPEVIGRLNKLEGLELNANK 404 (461)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~-------~~~~l~~~~~L~~L~L~~n~ 404 (461)
++..+....++|++|++++|.+++..+. .+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4444544444788888888887764442 235567788888888874432 23345567777788888887
Q ss_pred CcccCChhh
Q 037538 405 FSGFMPSSL 413 (461)
Q Consensus 405 l~~~~~~~~ 413 (461)
+.+..+..+
T Consensus 296 l~~~~~~~~ 304 (362)
T 3goz_A 296 IHPSHSIPI 304 (362)
T ss_dssp CCGGGCHHH
T ss_pred CCCcchHHH
Confidence 776544444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=192.61 Aligned_cols=214 Identities=20% Similarity=0.195 Sum_probs=149.4
Q ss_pred ccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC
Q 037538 93 SIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLIS 172 (461)
Q Consensus 93 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 172 (461)
.+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4455443 57889999999888766667888889999999999888666667888899999999999888777788888
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCccc-CChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS-IPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------------- 164 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------------- 164 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--------------
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC--------------
Confidence 89999999998888876666788888899999988888753 577777777776666666655432
Q ss_pred ccCccccChhhcCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEc
Q 037538 252 NYFTGSIPVSLSNASNLQ----VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 327 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 327 (461)
.+..+..+++|+ +|++++|.+++..+..+. ..+|+.|++++|++++.+ ...+..+++|+.|++
T Consensus 165 ------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 165 ------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVP------DGIFDRLTSLQKIWL 231 (276)
T ss_dssp ------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCC------TTTTTTCCSCCEEEC
T ss_pred ------CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecC------HhHhcccccccEEEc
Confidence 222333333333 666666666654444333 235666666666665422 223455666666666
Q ss_pred cCCcCccc
Q 037538 328 AQNGFGGE 335 (461)
Q Consensus 328 ~~n~~~~~ 335 (461)
++|.+.+.
T Consensus 232 ~~N~~~c~ 239 (276)
T 2z62_A 232 HTNPWDCS 239 (276)
T ss_dssp CSSCBCCC
T ss_pred cCCccccc
Confidence 66666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-25 Score=213.14 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=171.7
Q ss_pred EEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCC----ccCCCCC-CCCEEECccCCCcccCChhhhcCCCCcEEec
Q 037538 155 FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP----AWVGNFS-SLQVLLLARNNLHGSIPNELGQLSALGFFTL 229 (461)
Q Consensus 155 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 229 (461)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4555566665555555555556666666666654433 4455555 56666666666665545444432
Q ss_pred CCCCchhhccCCCCCcEEEccCccCccccCh----hhcCC-CCCCEEEcccccccccCCcc----CCC-CCCCCEEEccc
Q 037538 230 YENFISDVGLTLPNLKIFAGGVNYFTGSIPV----SLSNA-SNLQVLDFAENGLTGTIPEN----FGS-LKDLVRLNFDQ 299 (461)
Q Consensus 230 ~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~L~~ 299 (461)
+....++|++|++++|.+++..+. .+... ++|++|++++|.+++..+.. +.. .++|++|++++
T Consensus 75 -------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 75 -------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp -------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred -------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 000012333333333444333333 34444 79999999999998766544 334 36999999999
Q ss_pred CcCcccCCCCchhhhhhcCCC-CCCEEEccCCcCccccchHHHhc----cccccEEEccCCcCccc----Cchhhhc-CC
Q 037538 300 NELGSREIGDLNFLKFLANCT-SLEVLGLAQNGFGGEMPISIANL----STHLRILTMGYNLMHGN----IPVGIEN-LV 369 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~p~~~~~-l~ 369 (461)
|.+++.... .+...+...+ +|++|++++|.+++..+..+... +++|++|++++|.+++. ++..+.. .+
T Consensus 148 N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 148 NDLGIKSSD--ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp SCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred CcCCHHHHH--HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 998864322 4455666666 89999999999987776555432 23899999999998863 4445555 45
Q ss_pred CCCeeecccCcCccccc----hhhhcCCCCCeeccccccCcccC-------ChhhhcCccCCeeecccccccccCCc
Q 037538 370 NLSLLGLEGNNLSGSVP----EVIGRLNKLEGLELNANKFSGFM-------PSSLGNLTVLSRLLMEENRFEGSIPP 435 (461)
Q Consensus 370 ~L~~L~Ls~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (461)
+|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+..+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 89999999999986544 33466788999999999855332 33566788899999999998766443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=192.82 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=126.1
Q ss_pred CcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|+++..+ ...+.++++|+
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~------~~~~~~l~~L~ 88 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP------AGIFKELKNLE 88 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC------TTTTSSCTTCC
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC------hhhhcCCCCCC
Confidence 3444444444442 333222 45666666666666555556666666666666666665421 22345566666
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
+|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 666666666643333344444 6777777777776666666667777777777777777555555667777777777777
Q ss_pred cCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 77765555677777777777777777755555566777777777777776543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=215.75 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=142.1
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCC--CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNL--TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGK 141 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 141 (461)
.|..|.++.|++ ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 455788887754 34677888777665 3344455 6777777777777655444 45677777777777766543
Q ss_pred -CCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC-CCccc-CCccCCCCCCCCEEECccC-CCccc-CCh
Q 037538 142 -IPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS-NLTGN-IPAWVGNFSSLQVLLLARN-NLHGS-IPN 216 (461)
Q Consensus 142 -~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~ 216 (461)
+|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 5556666777777777777666666666666777777777766 45542 4444555666666666666 55532 344
Q ss_pred hhhcCC-CCcEEecCCCCchhhccCCCCCcEEEccCccCc-cccChhhcCCCCCCEEEccccc-ccccCCccCCCCCCCC
Q 037538 217 ELGQLS-ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFT-GSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSLKDLV 293 (461)
Q Consensus 217 ~l~~l~-~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 293 (461)
.+..++ +|++|++++|.+ .++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRK------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp HHHHSCTTCCEEECCSCGG------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred HHHhcccCCCEEEeCCCcc------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 444444 444444444311 222 2344455666777777777776 5555555666666677
Q ss_pred EEEcccCc-CcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 294 RLNFDQNE-LGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 294 ~L~L~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
+|++++|. +.. .....+.++++|+.|++++|
T Consensus 251 ~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIP------ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCG------GGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCH------HHHHHHhcCCCCCEEeccCc
Confidence 77776663 222 12234455666666666655
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-25 Score=215.26 Aligned_cols=248 Identities=17% Similarity=0.214 Sum_probs=155.7
Q ss_pred CCccCCCCCCCCEEECccCCCcccCChh----hhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh---
Q 037538 190 IPAWVGNFSSLQVLLLARNNLHGSIPNE----LGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL--- 262 (461)
Q Consensus 190 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l--- 262 (461)
++..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+. .+++.+|..+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-----------------~l~~~~~~~~~~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-----------------RVKDEIPEALRLL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-----------------SCGGGSHHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-----------------ccccchhHHHHHH
Confidence 4455556677777777777776543332 445566666666554332 2333344333
Q ss_pred ----cCCCCCCEEEcccccccc----cCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC---------CCCCEE
Q 037538 263 ----SNASNLQVLDFAENGLTG----TIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC---------TSLEVL 325 (461)
Q Consensus 263 ----~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~---------~~L~~L 325 (461)
..+++|++|++++|.+++ .++..+..+++|++|++++|.++..... .+...+..+ ++|++|
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--KIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--HHHHHHHHHhhhhhcccCCCCcEE
Confidence 566777777777777765 3555666677777777777776542111 222333333 677777
Q ss_pred EccCCcCc-cccc---hHHHhccccccEEEccCCcCcc-----cCchhhhcCCCCCeeecccCcCc----cccchhhhcC
Q 037538 326 GLAQNGFG-GEMP---ISIANLSTHLRILTMGYNLMHG-----NIPVGIENLVNLSLLGLEGNNLS----GSVPEVIGRL 392 (461)
Q Consensus 326 ~L~~n~~~-~~~~---~~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~~ 392 (461)
++++|+++ +.++ ..+...+ +|++|++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred ECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 77777776 3333 2344444 77777777777762 23335667777777777777775 4566677777
Q ss_pred CCCCeeccccccCccc----CChhhhc--CccCCeeecccccccc----cCCccC-CCCCCCCEEEccCCCCcccC
Q 037538 393 NKLEGLELNANKFSGF----MPSSLGN--LTVLSRLLMEENRFEG----SIPPSL-GNCKKLQVLNLSSNNLNGTI 457 (461)
Q Consensus 393 ~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~i 457 (461)
++|+.|+|++|++++. ++..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777788877777754 4555533 7777788888877776 466666 55777788888888777654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=194.60 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=106.5
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34455555555555554 222 24555555555555555543 2 24555555555555555555444444555555555
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--------------------~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT--------------------ELDLSYNQLQSLP 173 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC--------------------EEECCSSCCCCCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC--------------------EEECCCCCcCccC
Confidence 55555555544444455555555555555555533333333333222 2223333333333
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccch
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPI 338 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 338 (461)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++++.++++.|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCcccC
Confidence 3344555666666666666665555555666666666666665543 234555555555555555555
Q ss_pred HHHhc
Q 037538 339 SIANL 343 (461)
Q Consensus 339 ~~~~~ 343 (461)
++..+
T Consensus 241 ~~~~~ 245 (272)
T 3rfs_A 241 SAGSV 245 (272)
T ss_dssp TTSCB
T ss_pred ccccc
Confidence 44433
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=197.48 Aligned_cols=223 Identities=23% Similarity=0.217 Sum_probs=148.5
Q ss_pred EEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccc
Q 037538 202 VLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT 279 (461)
Q Consensus 202 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 279 (461)
.+++..+.+... .....+++|+.|++++|.+..+. ..+++|+.|++++|.+++. ..+..+++|++|++++|.++
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC
Confidence 334444444322 34567788888888888775442 3467777777777777652 35677777777777777777
Q ss_pred ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcc
Q 037538 280 GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHG 359 (461)
Q Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (461)
+..+..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSL------PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQS 171 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCC
T ss_pred ccChhHhcCCcCCCEEECCCCcCCcc------CHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCc
Confidence 66666677777777777777777652 233456667777777777777754444445554 77777777777776
Q ss_pred cCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCC
Q 037538 360 NIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439 (461)
Q Consensus 360 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 439 (461)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. ++.|+.+++..|.++|.+|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 5555566777777777777777766666667777777777777766532 445667777777777777776665
Q ss_pred CCC
Q 037538 440 CKK 442 (461)
Q Consensus 440 l~~ 442 (461)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-25 Score=216.36 Aligned_cols=173 Identities=22% Similarity=0.273 Sum_probs=98.6
Q ss_pred cChhhcCCCCCCEEEcccccccccCCccC----CCC---------CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCE
Q 037538 258 IPVSLSNASNLQVLDFAENGLTGTIPENF----GSL---------KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEV 324 (461)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~ 324 (461)
+|..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|+++..... .+...+..+++|++
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--EWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--HHHHHHHHCTTCCE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--HHHHHHHhCCCcCE
Confidence 34445555666666666665543322222 222 5666666666666532110 12234556666666
Q ss_pred EEccCCcCccc-----cchHHHhccccccEEEccCCcCc----ccCchhhhcCCCCCeeecccCcCccc----cchhhhc
Q 037538 325 LGLAQNGFGGE-----MPISIANLSTHLRILTMGYNLMH----GNIPVGIENLVNLSLLGLEGNNLSGS----VPEVIGR 391 (461)
Q Consensus 325 L~L~~n~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~ 391 (461)
|++++|+++.. .+..+..++ +|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 66666666521 222333443 6677777777664 44566666667777777777776654 3444432
Q ss_pred --CCCCCeeccccccCcc----cCChhh-hcCccCCeeecccccccccC
Q 037538 392 --LNKLEGLELNANKFSG----FMPSSL-GNLTVLSRLLMEENRFEGSI 433 (461)
Q Consensus 392 --~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 433 (461)
+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6677777777777765 356555 45677777777777776554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=204.46 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=131.2
Q ss_pred CCcEEEccCCCCcccCCccCCCC--CCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh-----hccCCCCCcEE
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNF--SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD-----VGLTLPNLKIF 247 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~l~~L~~L 247 (461)
.++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.. ....+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887766 3344555 7788888888888766554 4456667777766665432 22345555555
Q ss_pred EccCccCccccChhhcCCCCCCEEEcccc-ccccc-CCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCCC-CCC
Q 037538 248 AGGVNYFTGSIPVSLSNASNLQVLDFAEN-GLTGT-IPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCT-SLE 323 (461)
Q Consensus 248 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~~-~L~ 323 (461)
++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .++..+..++ +|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETIT 198 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCC
Confidence 55555555555555555555555555555 34432 3334445555555555555 55431 1334445555 555
Q ss_pred EEEccCC--cCc-cccchHHHhccccccEEEccCCc-CcccCchhhhcCCCCCeeecccCc-CccccchhhhcCCCCCee
Q 037538 324 VLGLAQN--GFG-GEMPISIANLSTHLRILTMGYNL-MHGNIPVGIENLVNLSLLGLEGNN-LSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 324 ~L~L~~n--~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L 398 (461)
+|++++| .++ +.++..+..++ +|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 5555555 333 23344344443 55555555555 444444455555555555555553 221111234455555555
Q ss_pred ccccccCcccCChhhhcC-ccCCeeecccccccccCCccCC
Q 037538 399 ELNANKFSGFMPSSLGNL-TVLSRLLMEENRFEGSIPPSLG 438 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~ 438 (461)
++++| ++.. .+..+ ..+..|++++|++++..|..++
T Consensus 278 ~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 55555 2221 12222 2244444555555555554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-23 Score=190.70 Aligned_cols=178 Identities=25% Similarity=0.314 Sum_probs=112.2
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
+++++|++++|.+++..+..+..+++|++|++++|.+++... ...+++|+.|++++|+++ .+|..+..++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~- 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP- 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------CSCCTTCCEEECCSSCCS-SCCCCTTTCT-
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------CCCCCcCCEEECCCCcCC-cCchhhccCC-
Confidence 455666666666655555556666666666666665554221 134566666666666665 4555444444
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 66666666666665555666667777777777777765555556667777777777777765444556667777777777
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|+++ .+|..+..+++|+.+++++|++.
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77776 56666666667777777777664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=184.04 Aligned_cols=191 Identities=23% Similarity=0.266 Sum_probs=140.0
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
+|+.|.|.+|.. ..++++++++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 578899999963 3457888888886 5665554 688888888888887777778888888888888888887777
Q ss_pred cCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCC
Q 037538 144 TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSA 223 (461)
Q Consensus 144 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 223 (461)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 148 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------- 148 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH--------
Confidence 778888888888888888876666677778888888888887775555556677777777777777664333
Q ss_pred CcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 224 LGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 224 L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 149 ------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 ------------------------------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ------------------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ------------------------------------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 23445566666666666666655556667777777777777766
Q ss_pred c
Q 037538 304 S 304 (461)
Q Consensus 304 ~ 304 (461)
.
T Consensus 193 c 193 (251)
T 3m19_A 193 C 193 (251)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=194.92 Aligned_cols=202 Identities=19% Similarity=0.125 Sum_probs=155.6
Q ss_pred CCCCcEEEccCccCccccChhh--cCCCCCCEEEcccccccccCC----ccCCCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSL--SNASNLQVLDFAENGLTGTIP----ENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
.++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+ ..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------FSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------CCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------hhHH
Confidence 3557777777777777777776 778888888888888876544 234568888888888888876 3345
Q ss_pred hhcCCCCCCEEEccCCcCccc--cch--HHHhccccccEEEccCCcCcccCch----hhhcCCCCCeeecccCcCccccc
Q 037538 315 FLANCTSLEVLGLAQNGFGGE--MPI--SIANLSTHLRILTMGYNLMHGNIPV----GIENLVNLSLLGLEGNNLSGSVP 386 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~--~~~--~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~ 386 (461)
.+..+++|++|++++|++.+. ++. .+..++ +|++|++++|.++. ++. .+..+++|++|+|++|.+.+..|
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 567788888888888887643 211 123444 88999999998863 222 24678999999999999998778
Q ss_pred hhhhcC---CCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 387 EVIGRL---NKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 387 ~~l~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 777776 69999999999999 6787764 8999999999999963 44 6778999999999999975
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=183.87 Aligned_cols=201 Identities=20% Similarity=0.188 Sum_probs=86.3
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+ . +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 33444444444444444 3333222 344444444444443333444444444444444444432211 1 34444444
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+ ++..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--------------------~~~~ 140 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL--------------------KTLP 140 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC--------------------CCCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC--------------------CccC
Confidence 444444444 3444444444444444444444433333333333333333333222 2222
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcC
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 332 (461)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++. ++..+...++|+.+++++|.+
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-------IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCCCSEEECCSCCB
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-------cChhhcccccCCeEEeCCCCc
Confidence 2233444555555555555554433444455555555555555542 222233334555555555544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=191.16 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=129.5
Q ss_pred CCCCEEecCCCCCcccCch---hccCCCCCCEEeCCCCCCCCCCCcCC--CCCCCCCEEEccCCcCCCcCc----hhhcC
Q 037538 102 TNLTGINLFQNRFHGQIPE---EIGRLQKLQDLNLTYNYLSGKIPTNL--SHCTELRSFEASANDFIGQIP----DQLIS 172 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~ 172 (461)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877532111 12235679999999999998888887 889999999999999887555 34567
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCccc--C--ChhhhcCCCCcEEecCCCCchhhc-------cCC
Q 037538 173 LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS--I--PNELGQLSALGFFTLYENFISDVG-------LTL 241 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~-------~~l 241 (461)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.+..+. ..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999877778888999999999999987642 1 122356777777777777764321 223
Q ss_pred CCCcEEEccCccCccccChhhcCC---CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNA---SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 444444444444444444333333 34444444444444 2333332 34444444444444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=178.99 Aligned_cols=179 Identities=27% Similarity=0.346 Sum_probs=88.9
Q ss_pred CcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
.+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|+
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~ 86 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------SAGVFDDLTELG 86 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc------CHhHhccCCcCC
Confidence 445555555544 2333332 3555555555555555555555555555555555555441 222334444555
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 403 (461)
+|++++|++ ++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 87 ~L~L~~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 87 TLGLANNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp EEECTTSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 555555544 4433444445555555555555555433334445555555555555
Q ss_pred cCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 404 KFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55544444455555555555555555544444455555555555555555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=177.14 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=145.8
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC-CCCCCCcCCCCCCCCCEEEccC-CcCCCcCchhhcCCCCCcEE
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY-LSGKIPTNLSHCTELRSFEASA-NDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 179 (461)
+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 488999999999987666688889999999999997 7755556788899999999998 88887666788899999999
Q ss_pred EccCCCCcccCCccCCCCCCCC---EEECccC-CCcccCChhhhcCCCCc-EEecCCCCchhhccCCCCCcEEEccCccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQ---VLLLARN-NLHGSIPNELGQLSALG-FFTLYENFISDVGLTLPNLKIFAGGVNYF 254 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~l~~L~~L~l~~n~~ 254 (461)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+..+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i----------------- 171 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV----------------- 171 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-----------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-----------------
Confidence 999999885 665 77888888 9999999 88866666677777777 777766655432
Q ss_pred ccccChhhcCCCCCCEEEccccc-ccccCCccCCCC-CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 255 TGSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSL-KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
|......++|++|++++|. +++..+..|..+ ++|+.|++++|+++..+.. .+++|+.|+++++
T Consensus 172 ----~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 172 ----QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARNT 236 (239)
T ss_dssp ----CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTTC
T ss_pred ----CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccCc
Confidence 2222222567777777774 665556666667 7777777777777653221 3566777777654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=170.99 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
...|.|.++.|... +++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..
T Consensus 4 ~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 45689999998642 222 334333 468999999999998666667889999999999999998666
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66778999999999999999876666788999999999999999976666788999999999999999976666678888
Q ss_pred CCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 223 ALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
+|++|++++|.+. ..+++++.++++.|.++|.+|.+++
T Consensus 149 ~L~~L~l~~N~~~---~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWD---CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBC---CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCee---cCCCCHHHHHHHHHhCCceeeccCc
Confidence 8888888777543 1233444444444444444444333
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=178.00 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=159.2
Q ss_pred CCCcEEEccCccCccccChhhcCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEccc-CcCcccCCCCchhhhhhcCC
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG-LTGTIPENFGSLKDLVRLNFDQ-NELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~ 319 (461)
++++.|++++|.+++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |+++..+ +..+.++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~------~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID------PDALKEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC------TTSEECC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC------HHHhCCC
Confidence 356777777777776666678888999999999996 8777677888899999999998 8887632 3456788
Q ss_pred CCCCEEEccCCcCccccchHHHhcccccc---EEEccCC-cCcccCchhhhcCCCCC-eeecccCcCccccchhhhcCCC
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLR---ILTMGYN-LMHGNIPVGIENLVNLS-LLGLEGNNLSGSVPEVIGRLNK 394 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~~~~ 394 (461)
++|+.|++++|.+++ +|. +..+. +|+ +|++++| .+++..+..+..+++|+ .|++++|.++ .+|......++
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~ 180 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK 180 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred CCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCC
Confidence 899999999998885 665 55554 777 9999999 88877777788999999 9999999998 56554444489
Q ss_pred CCeecccccc-CcccCChhhhcC-ccCCeeecccccccccCCccCCCCCCCCEEEccCCC
Q 037538 395 LEGLELNANK-FSGFMPSSLGNL-TVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN 452 (461)
Q Consensus 395 L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 452 (461)
|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9999999995 887777889999 999999999999984 5554 57889999998864
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=181.98 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=133.6
Q ss_pred hhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 037538 218 LGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRL 295 (461)
Q Consensus 218 l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 295 (461)
...+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456778888888888775542 346777788887777765443 77777788888887777653 357777777888
Q ss_pred EcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeee
Q 037538 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLG 375 (461)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 375 (461)
++++|++++. ..+..+++|+.|++++|.+++..+ +..++ +|++|++++|.+++. +. +..+++|+.|+
T Consensus 113 ~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 113 DLTSTQITDV--------TPLAGLSNLQVLYLDLNQITNISP--LAGLT-NLQYLSIGNAQVSDL-TP-LANLSKLTTLK 179 (308)
T ss_dssp ECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred ECCCCCCCCc--------hhhcCCCCCCEEECCCCccCcCcc--ccCCC-CccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence 8877777652 126677777777777777764332 44554 777777777777753 32 67777777777
Q ss_pred cccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 376 LEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 376 Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 77777774332 667777777777777777443 36777777777777777764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=178.45 Aligned_cols=192 Identities=23% Similarity=0.385 Sum_probs=96.6
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 3455555555555554 233 35555555555555555552 222 55555555555555555432 245555556666
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. +. +
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--------------------~~-~ 167 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--------------------DL-T 167 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--------------------CC-G
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC--------------------CC-h
Confidence 666655553 22 25555566666666665553221 444444444444443332 21 1
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCc
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 333 (461)
. +..+++|++|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|.++
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEEEEEE
T ss_pred h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEEccCCeee
Confidence 1 4445555555555555543322 455555555555555555421 1455556666666666554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-21 Score=192.23 Aligned_cols=201 Identities=22% Similarity=0.313 Sum_probs=146.3
Q ss_pred CCCCCCCc-----ceeeE-EecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEe
Q 037538 59 WNDSVHFC-----NWVGV-TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLN 132 (461)
Q Consensus 59 w~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 132 (461)
|.....+| .|.++ .|.. .+++.|+++++++.+ +|..+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 44444556 68888 6763 579999999999986 77655 389999999999998 677 4578999999
Q ss_pred CCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcc
Q 037538 133 LTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHG 212 (461)
Q Consensus 133 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 212 (461)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 99999995 777 665 99999999999987 666 68999999999999985 665 57899999999999986
Q ss_pred cCChhhhcCCCCcEEecCCCCchhhccCCCCC-------cEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 213 SIPNELGQLSALGFFTLYENFISDVGLTLPNL-------KIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 213 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
+|. +. ++|+.|++++|.+..+..-..+| +.|++++|.++ .+|..+..+++|++|++++|.+++.+|..
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 666 54 78888888888776544311133 44455554444 24444444444555555555444444433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=164.89 Aligned_cols=173 Identities=23% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 266 SNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
+++++|++++|.+++..+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+..+..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 100 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL------PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT- 100 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc------ChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc-
Confidence 4566666666666554444555666666666666665542 122345556666666666666543333344444
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecc
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLME 425 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 425 (461)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .++.|+.|+++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 66666666666665555555666677777777776665544456666677777777776553 34566666777
Q ss_pred cccccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 426 ENRFEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 426 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
.|+++|.+|..++.++. +...|...|.
T Consensus 174 ~n~~~g~ip~~~~~l~~----~~~~C~~~~~ 200 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVAP----DSAKCSGSGK 200 (208)
T ss_dssp HHHCTTTBBCTTSSBCT----TCSBBTTTCC
T ss_pred HHhCCceeeccCccccC----CccccccCCC
Confidence 77777777766665554 4444444443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=179.86 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=110.4
Q ss_pred CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEcc
Q 037538 103 NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLG 182 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (461)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777776664 55544 256777777777666 555 345666666666666664 554 443 66666666
Q ss_pred CCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhh
Q 037538 183 TSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSL 262 (461)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 262 (461)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------------------~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----------------------LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------------------CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----------------------cCCCcCEEECCCCCCCC-cch-h
Confidence 666664 444 45666666666666653 332 23455555555555554 444 4
Q ss_pred cCCCCCCEEEcccccccccCCccCCCCCCC-------CEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccc
Q 037538 263 SNASNLQVLDFAENGLTGTIPENFGSLKDL-------VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 335 (461)
. ++|++|++++|.++ .+|. +.. +| +.|++++|+++. ++..+..+++|+.|++++|.+++.
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-------IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-------CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-------cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 3 67777777777776 4444 433 55 666666666653 334444566666666666666666
Q ss_pred cchHHHhc
Q 037538 336 MPISIANL 343 (461)
Q Consensus 336 ~~~~~~~~ 343 (461)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 66665544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=159.73 Aligned_cols=163 Identities=23% Similarity=0.258 Sum_probs=131.7
Q ss_pred CCCCCCCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCC
Q 037538 57 SSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYN 136 (461)
Q Consensus 57 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 136 (461)
..|..+.+.|.|.++.|... .+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 44666778999999999642 232 4555443 88999999999999877888899999999999999
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCCh
Q 037538 137 YLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPN 216 (461)
Q Consensus 137 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 216 (461)
++.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 997555566788999999999999998766677888999999999999988 7788888899999999999999866666
Q ss_pred hhhcCCCCcEEecCCCCch
Q 037538 217 ELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~ 235 (461)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 6777888888887777664
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=172.10 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=115.2
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc-CcCcccCCCCchhhhhhcCC-CCCCEEEccC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ-NELGSREIGDLNFLKFLANC-TSLEVLGLAQ 329 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~ 329 (461)
|+++...|..+..+++|++|++++|.++...+..+....++..+++.+ +++..... ..+..+ ..++.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~------~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER------NSFVGLSFESVILWLNK 163 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT------TSSTTSBSSCEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc------cchhhcchhhhhhcccc
Confidence 344444456678889999999999999877776777777888888866 55655322 223333 4688899999
Q ss_pred CcCccccchHHHhccccccEEEccC-CcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCccc
Q 037538 330 NGFGGEMPISIANLSTHLRILTMGY-NLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 330 n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
|+++ .++....... +++++++.+ |.++...+..|..+++|+.|++++|+++. +|.. .+.+|+.|.+.++.-...
T Consensus 164 N~i~-~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp SCCC-EECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCC
T ss_pred cccc-CCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCc
Confidence 9998 5655555544 789999976 45554333467889999999999999984 4432 244555555555544446
Q ss_pred CChhhhcCccCCeeeccccc
Q 037538 409 MPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 409 ~~~~~~~l~~L~~L~l~~n~ 428 (461)
+| .+.++++|+.+++.++.
T Consensus 239 lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CC-CTTTCCSCCEEECSCHH
T ss_pred CC-CchhCcChhhCcCCCCc
Confidence 67 57888999999987654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=171.72 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=146.2
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
+.|.|..|.|.. ++++ .+|..+ .+++++|+|++|+++...+.+|..+++|++|+|++|++.+.+|
T Consensus 7 C~C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 7 CHCSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SEEETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred cEeeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 347777777753 3344 556555 3678899999999885445578888899999999888766555
Q ss_pred c-CCCCCCCCCE-EEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccC-CCcccCChhhhc
Q 037538 144 T-NLSHCTELRS-FEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARN-NLHGSIPNELGQ 220 (461)
Q Consensus 144 ~-~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~ 220 (461)
. .|.++++++. +.+++|+++...|..|.++++|++|++++|.+....+..+....++..+++.++ .+....+..+..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 4 5677877765 555667777666777888888888888888887555555555666777777553 344222222332
Q ss_pred CCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccc-ccccccCCccCCCCCCCCEEEccc
Q 037538 221 LSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE-NGLTGTIPENFGSLKDLVRLNFDQ 299 (461)
Q Consensus 221 l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~ 299 (461)
+. ..++.|++++|.++. ++.......+|+++++.+ |.++...+..|..+++|++|++++
T Consensus 152 ~~-------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 152 LS-------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp SB-------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred cc-------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 21 123344444444442 333334455677777764 444433334566777777777777
Q ss_pred CcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccC
Q 037538 300 NELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGY 354 (461)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (461)
|+++..+.. .+.+|+.|.+.++.--..+|. +..++ +|+.+++.+
T Consensus 212 N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP~-l~~l~-~L~~l~l~~ 255 (350)
T 4ay9_X 212 TRIHSLPSY---------GLENLKKLRARSTYNLKKLPT-LEKLV-ALMEASLTY 255 (350)
T ss_dssp SCCCCCCSS---------SCTTCCEEECTTCTTCCCCCC-TTTCC-SCCEEECSC
T ss_pred CCcCccChh---------hhccchHhhhccCCCcCcCCC-chhCc-ChhhCcCCC
Confidence 776653221 134555555544432223442 33333 455555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=153.34 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=129.0
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
.+.|.|..+.|. +++++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 8 ~C~C~~~~v~c~------------~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 8 ACTCSNNIVDCR------------GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TSEEETTEEECT------------TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CCEECCCEEEcC------------CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 345667666664 34444 4555444 68999999999998767778889999999999999998777
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 222 (461)
|..|.++++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 88899999999999999999865555678899999999999999987788888999999999999999977777788888
Q ss_pred CCcEEecCCCCch
Q 037538 223 ALGFFTLYENFIS 235 (461)
Q Consensus 223 ~L~~L~l~~n~l~ 235 (461)
+|+.|++++|.+.
T Consensus 153 ~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEeCCCCcC
Confidence 8888888888764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=162.47 Aligned_cols=183 Identities=25% Similarity=0.334 Sum_probs=135.2
Q ss_pred ecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 037538 228 TLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR 305 (461)
Q Consensus 228 ~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (461)
.+..+.+.+.. ..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++.
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC
Confidence 34444443321 2367788888888887653 3 47778888888888888876544 78888888888888887652
Q ss_pred CCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc
Q 037538 306 EIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV 385 (461)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 385 (461)
..+..+++|+.|++++|++++ + ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 106 --------~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 --------SSLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp --------GGGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred --------hhhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 236778888888888888874 3 3455555 788888888888754 46778888888888888887554
Q ss_pred chhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccc
Q 037538 386 PEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 386 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4 7788888888888888875 33 47788888888888888875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=154.40 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=82.3
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccccc
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLR 348 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~ 348 (461)
+.+++++|.++. +|..+. +.+++|++++|++++... ...+..+++|+.|++++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~-----~~~~~~l~~L~~L~L~~N~i~--------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEA-----TGIFKKLPQLRKINFSNNKIT--------------- 70 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECC-----CCCGGGCTTCCEEECCSSCCC---------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCc-----hhhhccCCCCCEEECCCCcCC---------------
Confidence 477777777763 444332 345666666666654211 112344455555555555544
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|+.|++++|+
T Consensus 71 ----------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 71 ----------DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp ----------EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred ----------EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 4444445555555555555555554444445555555555555555555555555555555555555555
Q ss_pred ccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 429 FEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 429 l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
+++..|..+..+++|+.|++++|++.+
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 555555555555555555555555543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.72 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=129.7
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCc-hhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIP-EEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
.++++++.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555666665 4666553 467899999999987644 45889999999999999999777778999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS 235 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 235 (461)
.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999888888999999999999999999888889999999999999999999888888998888888888888764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=153.75 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=77.7
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccccc
Q 037538 269 QVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLR 348 (461)
Q Consensus 269 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~ 348 (461)
+.++++++.++. +|..+. ++++.|++++|++++.. +..+..+++|+.|++++|.+++..|..+..++ +|+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIP------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLN 83 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCC
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcC------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCC
Confidence 567777777663 444332 56666666666666422 22344555566666655555544444444443 455
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccc
Q 037538 349 ILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 349 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55555555543333334444555555555555554444444445555555555555544444444444555555555544
Q ss_pred cc
Q 037538 429 FE 430 (461)
Q Consensus 429 l~ 430 (461)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 43
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-20 Score=191.10 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=126.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEe---
Q 037538 33 TIEADKLALLDFKNHLTQDPLQIMSSWND-SVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGIN--- 108 (461)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~--- 108 (461)
..+.++.+++++..+.....+.....|.. ....+.|.++.+.. ++++.+++.++.+.. .+..+.....|+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence 45677889999988765444555556643 34567788877764 789999998888764 333333333333333
Q ss_pred --cCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCC
Q 037538 109 --LFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNL 186 (461)
Q Consensus 109 --L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 186 (461)
++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 2233333 45677888999999999999988 78888888999999999999988 7888899999999999999999
Q ss_pred cccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc-cCC----CCCcEEEccCccCccccChh
Q 037538 187 TGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG-LTL----PNLKIFAGGVNYFTGSIPVS 261 (461)
Q Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l----~~L~~L~l~~n~~~~~~~~~ 261 (461)
+ .+|..++++++|++|++++|.++ .+|..++.+++|++|++++|.+.... ..+ .....+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 8 77888999999999999999987 77888999999999999999885321 101 1112356788888887774
Q ss_pred hcCCCCCCEEEcccc--------cccccCCccCCCCCCCCEEEcccCcCc
Q 037538 262 LSNASNLQVLDFAEN--------GLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 262 l~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
.|+.|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 4556666666 223333334455556666667777664
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=159.16 Aligned_cols=184 Identities=24% Similarity=0.286 Sum_probs=147.8
Q ss_pred ECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccccccc
Q 037538 204 LLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 204 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
.+..+.+.+. ..+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC
Confidence 3444444432 23567888999999999886543 457899999999999987554 88999999999999998763
Q ss_pred CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccC
Q 037538 282 IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI 361 (461)
Q Consensus 282 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 361 (461)
+.+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+++..
T Consensus 106 --~~l~~l~~L~~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 --SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIV 172 (291)
T ss_dssp --GGGTTCTTCCEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCG
T ss_pred --hhhccCCCCCEEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccch
Confidence 3488999999999999998762 3567889999999999999854 4566665 8999999999998754
Q ss_pred chhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCccc
Q 037538 362 PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGF 408 (461)
Q Consensus 362 p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 408 (461)
+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 4 8889999999999999985 44 488899999999999998753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=173.63 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=105.7
Q ss_pred CEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccc
Q 037538 201 QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGL 278 (461)
Q Consensus 201 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 278 (461)
..+.+..+.+.+.. .+..+++|+.|++++|.+..+. ..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCccccc--chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 33444444544332 2566777888888777765432 335666666666666665433 56666666666666666
Q ss_pred cccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCc
Q 037538 279 TGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMH 358 (461)
Q Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (461)
.+. +.+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..++ +|+.|++++|.+.
T Consensus 100 ~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 100 KDL--SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQIS 166 (605)
T ss_dssp CCC--TTSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCC
T ss_pred CCC--hhhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCC
Confidence 532 2456666666666666666541 2345556666666666666532 3344443 5666666666665
Q ss_pred ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcc
Q 037538 359 GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 359 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+..| +..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|++++
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 4433 55556666666666666532 2 35555666666666665554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=163.02 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=67.8
Q ss_pred CCCEEecCCCCCcccCchhcc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 103 NLTGINLFQNRFHGQIPEEIG-RLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|++++|++....+..|.++++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555544444444 5555555555555555444444555555555555555555444444555555555555
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhh---hcCCCCcEEecCCCCch
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNEL---GQLSALGFFTLYENFIS 235 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~ 235 (461)
++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555554444555555555555555555553222222 34555555555555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=151.61 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccc
Q 037538 268 LQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHL 347 (461)
Q Consensus 268 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L 347 (461)
.+.++.+++.++ .+|..+. ++|++|++++|++.+ ..+..+..+++|+.|++++|++++..+..+..++ +|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QL 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-Cc
Confidence 456777666665 3443332 566666666666665 2233445556666666666655422222233333 55
Q ss_pred cEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 348 RILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 348 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55555555555444444444555555555555554 44444455555555555555555433344444555555555555
Q ss_pred ccc
Q 037538 428 RFE 430 (461)
Q Consensus 428 ~l~ 430 (461)
++.
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=175.00 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=89.8
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.+.+ + +.+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 44555666666666554 233 35556666666666665553222 5555566666666555543 2 24555555555
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..++ +|+.|++++|.+++..
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~--------------------~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT--------------------KLDTLSLEDNQISDIV 169 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT--------------------TCSEEECCSSCCCCCG
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC--------------------CCCEEECcCCcCCCch
Confidence 5555555553 1 2345555555555555555532 3344433 4444444444444433
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 304 (461)
| +..+++|++|++++|.+++. +.+..+++|+.|+|++|.+.+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 3 55556666666666655542 235555666666666665554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=148.83 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=92.0
Q ss_pred cCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHh
Q 037538 263 SNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIAN 342 (461)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 342 (461)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+.. ...+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--------~~~l~~l~---------------------- 88 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--------YNPISGLS---------------------- 88 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--------CGGGTTCT----------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--------chhhhcCC----------------------
Confidence 34456666666666655 233 35555555555555553322 11233344
Q ss_pred ccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccccc-CcccCChhhhcCccCCe
Q 037538 343 LSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANK-FSGFMPSSLGNLTVLSR 421 (461)
Q Consensus 343 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 421 (461)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.
T Consensus 89 ---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 89 ---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp ---TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred ---CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 55555555555555455556666777777777777776666667777777777777776 44 344 5667777777
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 422 LLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 422 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 164 L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 164 LNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777777764 33 56677777777777777754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-18 Score=148.91 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred CCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCC
Q 037538 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 240 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 319 (461)
.+++|+.+++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++ ..+..+..+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTS------DKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBG------GGSCCCTTC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCc------ccChhhcCC
Confidence 3678999999999998 556 6889999999999999765 34578899999999999999986 344456677
Q ss_pred CCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeec
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 399 (461)
++|+.|++++|.+++..+..+..++ +|++|++++|...+.+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 7777777777777655555554443 55555555554212233 34444455555555544442 22 334444444444
Q ss_pred cccccC
Q 037538 400 LNANKF 405 (461)
Q Consensus 400 L~~n~l 405 (461)
+++|++
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 444443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=160.26 Aligned_cols=175 Identities=21% Similarity=0.188 Sum_probs=121.2
Q ss_pred cEEecCCCCchhhccCCC-CCcEEEccCccCccccChhhc-CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcC
Q 037538 225 GFFTLYENFISDVGLTLP-NLKIFAGGVNYFTGSIPVSLS-NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNEL 302 (461)
Q Consensus 225 ~~L~l~~n~l~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 302 (461)
+.++++++.+..+...++ .++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 577888887777665443 467788888887776666666 777888888888887777777777778888888888877
Q ss_pred cccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh---hcCCCCCeeecccC
Q 037538 303 GSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI---ENLVNLSLLGLEGN 379 (461)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~Ls~n 379 (461)
+.. .+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..+..+ ..+++|+.|+|++|
T Consensus 101 ~~~------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 101 HTL------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CcC------CHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 652 233456677777777777777765566666665 77777777777775333333 45777777777777
Q ss_pred cCccccchhhhcCCC--CCeeccccccCc
Q 037538 380 NLSGSVPEVIGRLNK--LEGLELNANKFS 406 (461)
Q Consensus 380 ~l~~~~~~~l~~~~~--L~~L~L~~n~l~ 406 (461)
++++..+..+..++. ++.|+|++|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 777555556666665 367777777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-20 Score=191.37 Aligned_cols=184 Identities=19% Similarity=0.143 Sum_probs=85.9
Q ss_pred CCCCcEEEccCccCccccChhhcCCCCCCEEEccccc-------------ccccCCccCCCCCCCCEEE-cccCcCcccC
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG-------------LTGTIPENFGSLKDLVRLN-FDQNELGSRE 306 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 306 (461)
.+.|+.|+++.|.++ .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 344555555555554 456666666666666665543 2333444444444555544 3333221100
Q ss_pred CCCc--hhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccc
Q 037538 307 IGDL--NFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGS 384 (461)
Q Consensus 307 ~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 384 (461)
...+ .....+. ...|+.|++++|.+++ +|. +..++ +|+.|++++|.++ .+|..++.+++|+.|+|++|.+++
T Consensus 427 ~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 427 SKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 0000 0000000 0135555555555543 343 44443 5555555555555 444455555555555555555553
Q ss_pred cchhhhcCCCCCeeccccccCcccC-ChhhhcCccCCeeeccccccccc
Q 037538 385 VPEVIGRLNKLEGLELNANKFSGFM-PSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 385 ~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+| .++.+++|+.|+|++|++++.. |..++.+++|+.|++++|++++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 34 4555555555555555555443 55555555555555555555543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=142.98 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=89.9
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCch-hhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPV-GIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
+.+++++|+++ .+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45666666664 4554332 2667777777776654443 36677777777777777776667777777777777777
Q ss_pred cccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777776666667777777777777777777777777777777777777777766543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=151.57 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=93.9
Q ss_pred CCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+.+++.++++++.++ .++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455566666666665 233 3566677777777777666 444 56667777777777777664333 6667777777
Q ss_pred EccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccC
Q 037538 180 RLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++++|++++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+. +. +
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--------------------~~-~ 144 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--------------------SI-V 144 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--------------------BC-G
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--------------------CC-h
Confidence 777777664 332 222 6677777777766642 23444444444444443332 11 1
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELG 303 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (461)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 244455555555555555543 34445555555555555444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=151.61 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=133.9
Q ss_pred CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
.++..++++.+.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++. +. +..+++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-------~~-l~~l~~ 86 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-------SP-LKDLTK 86 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCSS
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-------hh-hccCCC
Confidence 34556667777776533 46778899999999998874 34 688889999999999998863 22 778899
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
|+.|++++|++++ ++.... ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|+++
T Consensus 87 L~~L~L~~N~l~~-l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 87 LEELSVNRNRLKN-LNGIPS---ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLH 158 (263)
T ss_dssp CCEEECCSSCCSC-CTTCCC---SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECT
T ss_pred CCEEECCCCccCC-cCcccc---CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECC
Confidence 9999999999875 433222 489999999999886 33 588889999999999999854 4 67888999999999
Q ss_pred cccCcccCChhhhcCccCCeeeccccccccc
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGS 432 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 432 (461)
+|++++. ..+..+++|+.|++++|++++.
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999865 6788889999999999998865
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-19 Score=183.03 Aligned_cols=209 Identities=19% Similarity=0.133 Sum_probs=154.7
Q ss_pred CCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc-hhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEE-
Q 037538 195 GNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI-SDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLD- 272 (461)
Q Consensus 195 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~- 272 (461)
..++.|+.|++++|.+. .+|..++.+++|+.|++++|.. ..... .+..+...+..|..++.+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL--------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH--------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 45677888888888886 6788888888888888865531 11100 0111233455666777777777777
Q ss_pred cccccccccCCc-----cCC--CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccc
Q 037538 273 FAENGLTGTIPE-----NFG--SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLST 345 (461)
Q Consensus 273 l~~n~l~~~~~~-----~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 345 (461)
++.|.+.....- .+. ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~- 486 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALAALR- 486 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT-
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhhcCC-
Confidence 454433211000 000 013599999999999863 33 788899999999999999 8899998887
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCcccc-chhhhcCCCCCeeccccccCcccCCh---hhhcCccCCe
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSV-PEVIGRLNKLEGLELNANKFSGFMPS---SLGNLTVLSR 421 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 421 (461)
+|+.|++++|.+++ +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|++++|++++..|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999997 67 7999999999999999999876 99999999999999999999976543 2445788888
Q ss_pred eec
Q 037538 422 LLM 424 (461)
Q Consensus 422 L~l 424 (461)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=137.92 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=109.4
Q ss_pred CCCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 319 CTSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
.++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 366777777777776 56666666665 888888888888764 56788889999999999998778888878899999
Q ss_pred eccccccCccc-CChhhhcCccCCeeecccccccccCC---ccCCCCCCCCEEEccCCCCcccCCCC
Q 037538 398 LELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGSIP---PSLGNCKKLQVLNLSSNNLNGTIPKE 460 (461)
Q Consensus 398 L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~ip~~ 460 (461)
|++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999988853 22678888999999999999986554 47888999999999999886 56653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-17 Score=173.52 Aligned_cols=225 Identities=20% Similarity=0.176 Sum_probs=118.4
Q ss_pred CCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccccc
Q 037538 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENG 277 (461)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 277 (461)
+.++.|++.+|.+.. .+.. .++.++++.|.+.. +++..|.+. ..+..+..++.|+.|+|++|.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~ 235 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE----------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQ 235 (727)
T ss_dssp ------------------------------------------------------------------CCCCCCEEECTTSC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC----------cccccccee-cChhhhccCCCCcEEECCCCC
Confidence 457778887777764 2322 23444555544332 223334433 346678888999999999998
Q ss_pred ccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcC
Q 037538 278 LTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357 (461)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 357 (461)
+. .+|..+..+++|++|+|++|.++. ++..+.++++|+.|+|++|.++ .+|..+..+. +|++|++++|.+
T Consensus 236 l~-~l~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l 305 (727)
T 4b8c_D 236 IF-NISANIFKYDFLTRLYLNGNSLTE-------LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF-QLKYFYFFDNMV 305 (727)
T ss_dssp CS-CCCGGGGGCCSCSCCBCTTSCCSC-------CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT-TCSEEECCSSCC
T ss_pred CC-CCChhhcCCCCCCEEEeeCCcCcc-------cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC-CCCEEECCCCCC
Confidence 87 566667788999999999998873 4566788899999999999998 7888888876 899999999998
Q ss_pred cccCchhhhcCCCCCeeecccCcCccccchhhhcCCC-CCeeccccccCcccCChhhhcCccCCeeecccc--------c
Q 037538 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNK-LEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN--------R 428 (461)
Q Consensus 358 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~ 428 (461)
+ .+|..+..+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|..+ +.|+++.| .
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~ 378 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDS 378 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------
T ss_pred C-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCC
Confidence 7 67888999999999999999999888887765432 2347899999998888654 45556655 3
Q ss_pred ccccCCccCCCCCCCCEEEccCCCCccc
Q 037538 429 FEGSIPPSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 429 l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
+.+..+..+..+..++...++.|-+.+.
T Consensus 379 l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 379 LQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -----------------------CCCGG
T ss_pred ccccccchhhcccccceeeeeccccccc
Confidence 4444444556677777888888887643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=134.89 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=108.9
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCch-hccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCC
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPE-EIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 160 (461)
.+++++++++ .+|..+. .++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455566664 5666554 3899999999999865554 4888999999999999999888889999999999999999
Q ss_pred cCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC
Q 037538 161 DFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215 (461)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 215 (461)
++++..+..+.++++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9988888888899999999999999998888888889999999999998876543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=131.27 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=105.8
Q ss_pred CCCCCEEecCCCCCc-ccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEE
Q 037538 101 LTNLTGINLFQNRFH-GQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEII 179 (461)
Q Consensus 101 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 179 (461)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67888788888999999999888754 678888999999999998887788888888999999
Q ss_pred EccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEecC
Q 037538 180 RLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTLY 230 (461)
Q Consensus 180 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~ 230 (461)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999988853 34678888999999999999886655 478888888888775
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=133.00 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred CCCCCCEEecCCCCCc-ccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 100 NLTNLTGINLFQNRFH-GQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 100 ~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888888888886 66777777888888888888887744 67778888888888888887767777777888888
Q ss_pred EEccCCCCccc-CCccCCCCCCCCEEECccCCCcccCC---hhhhcCCCCcEEecCCCCchh
Q 037538 179 IRLGTSNLTGN-IPAWVGNFSSLQVLLLARNNLHGSIP---NELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 179 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~ 236 (461)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888888753 22567788888888888888875544 367777777777777766544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=132.44 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=90.6
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
.+.+++++++++ .+|..+ ++++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 345666666655 344322 2367777777777776555556777777777777777775555556777777777777
Q ss_pred cccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 777776666667777777888887777775545556777777888888887776544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=128.61 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=110.1
Q ss_pred CCCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCC
Q 037538 63 VHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
...|.|.++.|.. +++. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 4 ~C~C~~~~l~~~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEecC------------CCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 3457888777753 3343 344333 378999999999998666667889999999999999998666
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCC
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIP 215 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 215 (461)
+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6678899999999999999987777778889999999999999986555556788999999999999886544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=151.68 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=171.5
Q ss_pred CCCCCEEecCCCCCcccCchhccC-CCCCCEEeCCCCCCC--CCCCcCCCCCCCCCEEEccCCcCCCcCchhhcC-----
Q 037538 101 LTNLTGINLFQNRFHGQIPEEIGR-LQKLQDLNLTYNYLS--GKIPTNLSHCTELRSFEASANDFIGQIPDQLIS----- 172 (461)
Q Consensus 101 l~~L~~L~L~~n~~~~~~~~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~----- 172 (461)
+.+++.|.++++ +.+.....+.. +++|++|||++|++. ...+. .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 567888888764 22111223333 778888888888776 11111 122234444444422 1234555
Q ss_pred ---CCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEc
Q 037538 173 ---LTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAG 249 (461)
Q Consensus 173 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l 249 (461)
+++|+.+++.+ .++...+..|.++++|+++++.+|.+....+..|..+.++..+....+.....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~------------ 163 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF------------ 163 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc------------
Confidence 88888888887 67655566777888888888888877644445554444433333322110000
Q ss_pred cCccCccccChhhcCCCCCC-EEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEcc
Q 037538 250 GVNYFTGSIPVSLSNASNLQ-VLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328 (461)
Q Consensus 250 ~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 328 (461)
........+..+..|+ .+.+.... .++. .....-....++..+.+.
T Consensus 164 ----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~--------------------------~~~~~~~~~~~~~~l~~~ 210 (329)
T 3sb4_A 164 ----KNRWEHFAFIEGEPLETTIQVGAMG---KLED--------------------------EIMKAGLQPRDINFLTIE 210 (329)
T ss_dssp ----STTTTTSCEEESCCCEEEEEECTTC---CHHH--------------------------HHHHTTCCGGGCSEEEEE
T ss_pred ----cccccccccccccccceeEEecCCC---cHHH--------------------------HHhhcccCccccceEEEe
Confidence 0000011122233333 22221110 0000 000111123445555555
Q ss_pred CCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC-eeccccccCcc
Q 037538 329 QNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE-GLELNANKFSG 407 (461)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~-~L~L~~n~l~~ 407 (461)
++-.. .....+....++|+.+++++|+++...+.+|.++++|+.+++++| +....+..|.++++|+ .+.+.+ .++.
T Consensus 211 ~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 211 GKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp ECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred eeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 44221 112222222347888888888888766678889999999999987 7656667788999999 999988 7776
Q ss_pred cCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEc
Q 037538 408 FMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNL 448 (461)
Q Consensus 408 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 448 (461)
.-+.+|.+|++|+.+++++|.++...+.+|.+|++|+.+..
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66789999999999999999998776778999999998753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=133.17 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=88.6
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.++++++.++ .+|..+ ++++++|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 455432 236777777777776 4566677777777777777777766666677777777777777
Q ss_pred ccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666667777777777777777777555556777777777777777764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=132.13 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCCEEEccCCcCc-cccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 320 TSLEVLGLAQNGFG-GEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 320 ~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
++++.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 55555555554 677777777776654 456677777777777777776677777677777777
Q ss_pred ccccccCccc-CChhhhcCccCCeeecccccccccCC---ccCCCCCCCCEEEccC
Q 037538 399 ELNANKFSGF-MPSSLGNLTVLSRLLMEENRFEGSIP---PSLGNCKKLQVLNLSS 450 (461)
Q Consensus 399 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~ 450 (461)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777753 33667777788888888887776544 4667777788777763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-16 Score=146.93 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=140.5
Q ss_pred CCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCC
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~ 320 (461)
+++|+.+.+.. .++..-+..|..|++|+++++.+|.+....+.+|..+.++..+....+..... ... -...++.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~-i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF-KNR-WEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT-STT-TTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc-ccc-cccccccccc
Confidence 34444444444 44433345677888888888888888767777787777666666554211000 000 0112345566
Q ss_pred CCC-EEEccCCcCccccchHHHhc---cccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 321 SLE-VLGLAQNGFGGEMPISIANL---STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 321 ~L~-~L~L~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
.|+ .+.+... +.++..+... ..++..+.+.++-...........+++|+.++|++|+++...+..|.++++|+
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 666 5555433 2344433321 23677777766533222222223489999999999999966667899999999
Q ss_pred eeccccccCcccCChhhhcCccCC-eeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 397 GLELNANKFSGFMPSSLGNLTVLS-RLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
.+++.+| ++..-+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+. .|++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 9999998 7766778999999999 999998 777666789999999999999999886 4443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=127.40 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=99.0
Q ss_pred EEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCc
Q 037538 82 VLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161 (461)
Q Consensus 82 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 161 (461)
.+++++++++ .+|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3455566665 5565443 68889999999887 677888888899999999998887667778888888888888888
Q ss_pred CCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCc
Q 037538 162 FIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLH 211 (461)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 211 (461)
+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777777888888888888888888555556777888888888888775
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-15 Score=126.56 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=53.1
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCCh--hhhcCccCCeee
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS--SLGNLTVLSRLL 423 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~ 423 (461)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 455555555555432 23445555555555555555332233355555555555555554 3333 455555555555
Q ss_pred cccccccccCCcc----CCCCCCCCEEEccCCCC
Q 037538 424 MEENRFEGSIPPS----LGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 424 l~~n~l~~~~p~~----l~~l~~L~~L~ls~N~l 453 (461)
+++|+++ .+|.. +..+++|+.||+++|.+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555 33332 45555555555555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=123.72 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=103.6
Q ss_pred cccCCCCCCEEecCCCCCcccCchhccCCC-CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCC
Q 037538 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQ-KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTK 175 (461)
Q Consensus 97 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 175 (461)
.+.++.+|+.|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3566788888888888887 4554 44444 889999998888853 57888889999999999888654455588889
Q ss_pred CcEEEccCCCCcccCCc--cCCCCCCCCEEECccCCCcccCCh----hhhcCCCCcEEecCCCCchh
Q 037538 176 LEIIRLGTSNLTGNIPA--WVGNFSSLQVLLLARNNLHGSIPN----ELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 176 L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~ 236 (461)
|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|. .+..+++|+.|+++.|...+
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999886 4555 6778889999999999887 4555 37888888888888877644
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-16 Score=137.98 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=84.7
Q ss_pred hcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH
Q 037538 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA 341 (461)
Q Consensus 262 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 341 (461)
+.....++.++++++.+++..|. ++ .++..+..+++|++|++++|.+++ +| .+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-------~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~ 67 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-------KMDATLSTLKACKHLALSTNNIEK-IS-SLS 67 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-------CCHHHHHHTTTCSEEECSEEEESC-CC-CHH
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-------hhhHHHhcCCCCCEEECCCCCCcc-cc-ccc
Confidence 44456667777777777665554 00 122234444555555555555543 33 444
Q ss_pred hccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCC-hhhhcCccCC
Q 037538 342 NLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP-SSLGNLTVLS 420 (461)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 420 (461)
.++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 68 ~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 68 GME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 443 5555555555555 344444555556666666665553 33 35555566666666666553211 3455566666
Q ss_pred eeecccccccccCCcc----------CCCCCCCCEEEccCCCCc
Q 037538 421 RLLMEENRFEGSIPPS----------LGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 421 ~L~l~~n~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 454 (461)
.|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666665544432 45566666665 44443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-12 Score=124.68 Aligned_cols=268 Identities=10% Similarity=0.088 Sum_probs=133.3
Q ss_pred CCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEEC
Q 037538 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLL 205 (461)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (461)
..++.+.+.++ ++..-...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+...-...|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444332 221223334443 4555555433 332223334442 455555543 333333344555555555555
Q ss_pred ccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCcc
Q 037538 206 ARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPEN 285 (461)
Q Consensus 206 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 285 (461)
..|.+.......|. ..+|+.+.+..+ ++..-...|..+++|+.+++.++ ++.....+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~---------------------l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT---------------------LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT---------------------CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc---------------------hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 55555422222222 233333333321 11112234555666666666553 33333444
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhh
Q 037538 286 FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGI 365 (461)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 365 (461)
|.+ .+|+.+.+.. .+... -..+|.+|++|+.+++.++.+.. +......+.+|
T Consensus 245 F~~-~~L~~i~lp~-~i~~I------~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF 296 (401)
T 4fdw_A 245 FRE-SGITTVKLPN-GVTNI------ASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCL 296 (401)
T ss_dssp TTT-CCCSEEEEET-TCCEE------CTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTT
T ss_pred ccc-CCccEEEeCC-CccEE------ChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHh
Confidence 544 5666666632 23221 12345566666666665554320 01112334456
Q ss_pred hcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCC-CCC
Q 037538 366 ENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCK-KLQ 444 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~ 444 (461)
.+|++|+.+++.+ .+...-...|.++.+|+.+.+..+ ++..-..+|.++ +|+.+++++|.+....+..|..++ .++
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 6677777777763 355444556667777777777544 554555667777 777777777776654455666663 566
Q ss_pred EEEccCCC
Q 037538 445 VLNLSSNN 452 (461)
Q Consensus 445 ~L~ls~N~ 452 (461)
.+.+..+.
T Consensus 374 ~l~vp~~~ 381 (401)
T 4fdw_A 374 VIRVPAES 381 (401)
T ss_dssp EEEECGGG
T ss_pred EEEeCHHH
Confidence 77666554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-16 Score=136.05 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=88.6
Q ss_pred CCCCcEEEccCccCccccCh------hhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPV------SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
...++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----------- 83 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----------- 83 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-----------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-----------
Confidence 45666677777777776665 67777777888887777765 34 5555556666666655554
Q ss_pred hhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc-hhhhcCC
Q 037538 315 FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP-EVIGRLN 393 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~ 393 (461)
.+|..+..++ +|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..++
T Consensus 84 --------------------~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 84 --------------------KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140 (198)
T ss_dssp --------------------SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred --------------------cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence 2333333322 55555555555553 23 35555566666666666653211 3455566
Q ss_pred CCCeeccccccCcccCCh----------hhhcCccCCeeeccccccc
Q 037538 394 KLEGLELNANKFSGFMPS----------SLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~ 430 (461)
+|++|++++|++++..|. .+..+++|+.|| +|.++
T Consensus 141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666666666544333 256677777665 55554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-12 Score=123.43 Aligned_cols=327 Identities=11% Similarity=0.013 Sum_probs=187.5
Q ss_pred CccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCC
Q 037538 95 PASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLT 174 (461)
Q Consensus 95 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 174 (461)
..+|.++++|+.+.+.. .++..-..+|..|++|+.+++..+ ++..-...|.++.+|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 45677888888888864 355444567888888888888654 44333456777777777666433 2223334455554
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc---hhhccCCCCCcEEEccC
Q 037538 175 KLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI---SDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~l~~L~~L~l~~ 251 (461)
.++......... .....|.++++|+.+.+.++... .....+..+.+|+.+.+..+-- ......+..|+.+.+..
T Consensus 141 ~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 141 FKEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 333333222221 22345667777777777654322 3334566666777766655411 11122344455444443
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG 331 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 331 (461)
+... +........+|+.+.+.+. ++......+..+..++.+.+..+...- ....+..++.++.+......
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-------~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-------GGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-------CSCTTTTCTTCCEEEECSSE
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCccee-------eccccccccccceeccCcee
Confidence 3221 1222334466777776543 232334456677777777776653321 12345566777777665543
Q ss_pred CccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCCh
Q 037538 332 FGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS 411 (461)
Q Consensus 332 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 411 (461)
+.. ..+... .+|+.+.+..+ +......+|.++.+|+.+++.++ ++..-...|.+|.+|+.+.+..+ ++..-..
T Consensus 288 i~~---~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 288 VPE---KTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ECT---TTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ecc---cccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 221 112222 36777777654 44444556777888888888644 55344567778888888888766 5545566
Q ss_pred hhhcCccCCeeecccccccccCCccCCCCCCCCEE
Q 037538 412 SLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVL 446 (461)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 446 (461)
+|.+|++|+.+++..+ ++ .+..+|.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7888888888888654 22 334567777777664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=117.24 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
.+.+++++|+++ .+|..+ ++++++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 455666666655 344332 1255556666665555555555555555555555555554444444555555555555
Q ss_pred cccCcccCChhhhcCccCCeeecccccccc
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+|++++..+..|..+++|+.|++++|+++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 555554444445555555555555555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=119.30 Aligned_cols=321 Identities=14% Similarity=0.068 Sum_probs=221.3
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+.+..+ ++..-..+|.++++|+.+++.++ ++..-..+|..+.+|+.+.+..+ +...-...|.++..++....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 46888888743 55445678999999999999765 54344567889999998887654 33234455666654444333
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCc--h
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFI--S 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--~ 235 (461)
... ......+|.++++|+.+.+..+. .......+.++.+|+.+.+..+ +.......+..+..|+.+.+..+.. .
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred ccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence 322 22334568889999999987654 3244556778889999988766 4434456677888888887766543 2
Q ss_pred hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 236 DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 236 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
+.......|+.+.+.... +..-...+..+..++.+.+..+... .....|..+..++.+......+.. ..
T Consensus 224 ~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~---------~~ 292 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE---------KT 292 (394)
T ss_dssp TTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---------TT
T ss_pred hhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---------cc
Confidence 333445677877775432 2223346778899999999877443 455678889999998887654432 34
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+.+|+.+.+..+ ++..-...+.... +|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++..-...|.+|.+|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 677899999998764 4422233444444 8999999754 66555678899999999999876 664556789999999
Q ss_pred CeeccccccCcccCChhhhcCccCCee
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRL 422 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (461)
+.+.+..+ +. .+..+|.+|++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999866 33 345788889888765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=114.70 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=65.9
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777665 5554332 3667777777776666666666666677777777766654444456666666666666
Q ss_pred ccCcccCChhhhcCccCCeeeccccccc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
|++++..+..|..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=120.10 Aligned_cols=263 Identities=10% Similarity=0.060 Sum_probs=174.3
Q ss_pred CCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEE
Q 037538 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIR 180 (461)
Q Consensus 101 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 180 (461)
+..++.+.+.+ .++..-..+|..+ +|+.+.+..+ ++..-...|.++ +|+.+.+.. .+...-..+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46667777654 3443344556664 6888887665 543444456663 678887764 45544556677788888888
Q ss_pred ccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh---ccCCCCCcEEEccCccCccc
Q 037538 181 LGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV---GLTLPNLKIFAGGVNYFTGS 257 (461)
Q Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~l~~L~~L~l~~n~~~~~ 257 (461)
+.+|+++......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +..+ ...-.+|+.+.+. +.++..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNI 262 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEE
Confidence 887777743333444 577888887744 55455566777788888887664 2222 1222678888874 445544
Q ss_pred cChhhcCCCCCCEEEccccccc-----ccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcC
Q 037538 258 IPVSLSNASNLQVLDFAENGLT-----GTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGF 332 (461)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 332 (461)
-...|..|++|+.+++.+|.+. ...+..|.++++|+.+.+.+ .+...+ ..+|.+|++|+.+++..+ +
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~------~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG------QGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC------TTTTTTCCSCCEEEECTT-C
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh------hhhhcCCCCccEEEECcc-c
Confidence 4667888999999999887664 34566888999999999984 355422 346788899999999654 4
Q ss_pred ccccchHHHhccccccEEEccCCcCcccCchhhhcCC-CCCeeecccCcCc
Q 037538 333 GGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV-NLSLLGLEGNNLS 382 (461)
Q Consensus 333 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~ 382 (461)
+..-...+... +|+.+++.+|......+..|.+++ +++.|.+..+.+.
T Consensus 335 ~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 42223334443 899999999987766666677774 7888888877654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=111.60 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34444444444443334444444444444444444443333334444555555555555443333344555555555555
Q ss_pred cCCCc
Q 037538 207 RNNLH 211 (461)
Q Consensus 207 ~n~~~ 211 (461)
+|.+.
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 55554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-14 Score=136.98 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=131.4
Q ss_pred CCCCCEEEcccccccccCCcc----CC-CCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH
Q 037538 265 ASNLQVLDFAENGLTGTIPEN----FG-SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 339 (461)
.+.|++|++++|.++...... +. ..++|++|+|++|.++... .......+++|+.|++++|.+++.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 368999999999987653333 22 3379999999999987621 2222334568999999999998655444
Q ss_pred HHh----ccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccc----cchhhhcCCCCCeeccccccCcc
Q 037538 340 IAN----LSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNANKFSG 407 (461)
Q Consensus 340 ~~~----~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~ 407 (461)
+.. ..++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|+.|+|++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 432 124899999999998752 444557789999999999999753 35566778899999999999985
Q ss_pred c----CChhhhcCccCCeeecccccccccCCccCCCC---C--CCCEEE--ccCCCCcc
Q 037538 408 F----MPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC---K--KLQVLN--LSSNNLNG 455 (461)
Q Consensus 408 ~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l---~--~L~~L~--ls~N~l~~ 455 (461)
. ++..+..+++|+.|+|++|.|++.....+..+ . .++.+. +.+|.++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3 44556678999999999999986544444322 2 277777 77777654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=110.34 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
+|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 44444444444443334444444444444444444443323333445555555555555543323335555555555555
Q ss_pred cCCCc
Q 037538 207 RNNLH 211 (461)
Q Consensus 207 ~n~~~ 211 (461)
+|.+.
T Consensus 114 ~N~~~ 118 (174)
T 2r9u_A 114 NNPWD 118 (174)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 55554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-14 Score=139.22 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=129.9
Q ss_pred CCCCcEEEccCccCccccChhhcC-----CCCCCEEEcccccccccCCccC-CCCCCCCEEEcccCcCcccCCCCchhhh
Q 037538 241 LPNLKIFAGGVNYFTGSIPVSLSN-----ASNLQVLDFAENGLTGTIPENF-GSLKDLVRLNFDQNELGSREIGDLNFLK 314 (461)
Q Consensus 241 l~~L~~L~l~~n~~~~~~~~~l~~-----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (461)
.+.++.+++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|+|++|.+++.... .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~--~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK--DLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH--HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH--HHHH
Confidence 467999999999987654443332 3689999999998875533333 3456899999999998763221 2223
Q ss_pred hh-cCCCCCCEEEccCCcCccc----cchHHHhccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccc-
Q 037538 315 FL-ANCTSLEVLGLAQNGFGGE----MPISIANLSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGS- 384 (461)
Q Consensus 315 ~l-~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~- 384 (461)
.+ ...++|++|++++|.++.. ++..+...+ +|++|++++|.+++. ++..+...++|+.|+|++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 33 3578899999999998753 333334444 899999999998753 345667788999999999999853
Q ss_pred ---cchhhhcCCCCCeeccccccCcccCChhhhcCcc-----CCeee--cccccccc
Q 037538 385 ---VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV-----LSRLL--MEENRFEG 431 (461)
Q Consensus 385 ---~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~--l~~n~l~~ 431 (461)
++..+...++|++|+|++|.+++.....+..+.. |+.+. +.+|.+..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3445556789999999999998665555554321 66666 66666653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=116.17 Aligned_cols=102 Identities=23% Similarity=0.201 Sum_probs=52.4
Q ss_pred EEccCC-cCcccCchhhhcCCCCCeeeccc-CcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 350 LTMGYN-LMHGNIPVGIENLVNLSLLGLEG-NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 350 L~l~~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
++++++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 444 55555555555553 5555444445555555555555555555555555555555555555555
Q ss_pred cccccCCccCCCCCCCCEEEccCCCCc
Q 037538 428 RFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 428 ~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
+|++..+..+..++ |+.|++++|++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555553
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=104.17 Aligned_cols=318 Identities=10% Similarity=0.100 Sum_probs=164.4
Q ss_pred ccccCCC-CCCEEecCCCCCcccCchhccCCCCCCEEeCCCCC---CCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhc
Q 037538 96 ASIGNLT-NLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNY---LSGKIPTNLSHCTELRSFEASANDFIGQIPDQLI 171 (461)
Q Consensus 96 ~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 171 (461)
.+|.+++ .|+.+.+..+ ++..-..+|..|++|+.+.+..+. ++..-...|.++.+|+.+.+..+ ++.....++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4777777543 443445567777777777776542 33223345666666666655433 3323334566
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccC
Q 037538 172 SLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251 (461)
Q Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~ 251 (461)
++.+|+.+.+..+. .......+..+.+|+.+.+..+ +.......+. ...|+.+.+..+..
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~----------------- 194 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT----------------- 194 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-----------------
T ss_pred hhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-----------------
Confidence 66677777665432 2233344556666666666543 2211122222 23444444433211
Q ss_pred ccCccccChhhcCCCCCCEEEcccccccccCC-------------ccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcC
Q 037538 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIP-------------ENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 252 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 318 (461)
......+..+.+++......+......- ..+.....+..+.+... +.. .-..+|.+
T Consensus 195 ----~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~------i~~~aF~~ 263 (394)
T 4gt6_A 195 ----RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR------IETHAFDS 263 (394)
T ss_dssp ----EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE------ECTTTTTT
T ss_pred ----ccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceE------cccceeee
Confidence 1111233444445444443322211000 00111222333333211 111 11234667
Q ss_pred CCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
+..|+.+.+..+... .....+.... .|+.+.+. +.++.....+|.+|.+|+.+++.++ ++..-...|.+|.+|+.+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 777777777654322 1122233333 77777775 3444445567888899999999764 554445678889999999
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCc
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 454 (461)
.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+..|+.+.+..|.+.
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99754 654556789999999999999876542 46777888999988877653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=111.49 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=78.2
Q ss_pred cceeeEEecCCCCcEEEEEcCCC-CcccccCccccCCCCCCEEecCC-CCCcccCchhccCCCCCCEEeCCCCCCCCCCC
Q 037538 66 CNWVGVTCSPSNGRVTVLKLESK-QLVGSIPASIGNLTNLTGINLFQ-NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIP 143 (461)
Q Consensus 66 c~w~gv~c~~~~~~v~~L~l~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 143 (461)
|.|..+.|. ++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|
T Consensus 8 C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 777666664 33 454 4676 88888888888885 88887666778888888888888888887777
Q ss_pred cCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCc
Q 037538 144 TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLT 187 (461)
Q Consensus 144 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 187 (461)
..|.++++|++|+|++|++++..+..+..++ |++|++.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7778888888888888887754444444444 777777777665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-09 Score=100.13 Aligned_cols=321 Identities=12% Similarity=0.110 Sum_probs=185.5
Q ss_pred EEEEEcCCCCcccccCccccCCCCCCEEecCCCC---CcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 037538 80 VTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR---FHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156 (461)
Q Consensus 80 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 156 (461)
++.+.+... ++..-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++..-...+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555542 443445678899999999998763 54344567889999999888665 4434456788999999999
Q ss_pred ccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchh
Q 037538 157 ASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISD 236 (461)
Q Consensus 157 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 236 (461)
+..+ ........+..+.+|+.+.+..+ +.......+. ..+|+.+.+..+-.. .....+..+..++......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 9654 33344557888999999999765 3323333443 467898888765433 334566677777776665443322
Q ss_pred hccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhh
Q 037538 237 VGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316 (461)
Q Consensus 237 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 316 (461)
....+ ...+...............+..+.+.+ .+......+|..+..|+.+.+..+... .-..++
T Consensus 220 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF 284 (394)
T 4gt6_A 220 IDNVL-------YEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-------IGTGAF 284 (394)
T ss_dssp SSSCE-------EEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTT
T ss_pred cccee-------ecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-------ecCccc
Confidence 11100 000000000000011123334444432 223233445667777777776554322 112345
Q ss_pred cCCCCCCEEEccCCcCccccch-HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 317 ANCTSLEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 317 ~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
.+++.|+.+.+.. .++ .++. .+.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-...|.+|.+|
T Consensus 285 ~~c~~L~~i~l~~-~i~-~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFSS-RIT-ELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECCT-TCC-EECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccCCC-ccc-ccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 6677777777753 333 2333 233333 7777777654 44444567888899999998654 554455678889999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999998876532 4667778888887776544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=103.35 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=99.4
Q ss_pred hhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 037538 217 ELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLN 296 (461)
Q Consensus 217 ~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 296 (461)
...++++|+.|.+......... ++... .+.+...+..+++|++|++++|.-. .++. + .+++|++|+
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~----------is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~ 199 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQE----------ISWIE-QVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLE 199 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCC----------GGGCB-CCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEE
T ss_pred hhhhcchhhheeecCcchhhcc----------ccccc-ccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEE
Confidence 3556778888877654221100 00000 1123455667788888888776311 1222 3 367888888
Q ss_pred cccCcCcccCCCCchhhhhhc--CCCCCCEEEccC--CcCccc-----cchHHH-hccccccEEEccCCcCcccCchhhh
Q 037538 297 FDQNELGSREIGDLNFLKFLA--NCTSLEVLGLAQ--NGFGGE-----MPISIA-NLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 297 L~~n~l~~~~~~~~~~~~~l~--~~~~L~~L~L~~--n~~~~~-----~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
+..+.+.. .....+. .+|+|+.|+|+. +...+. +...+. ...++|++|++.+|.+.+..+..+.
T Consensus 200 L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 200 IISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp EECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred EecCCCCh------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 88777654 3333333 678888888753 211111 001111 1123667777766666543333332
Q ss_pred ---cCCCCCeeecccCcCcccc----chhhhcCCCCCeeccccccCcccCChhhhc-CccCCeeeccccc
Q 037538 367 ---NLVNLSLLGLEGNNLSGSV----PEVIGRLNKLEGLELNANKFSGFMPSSLGN-LTVLSRLLMEENR 428 (461)
Q Consensus 367 ---~l~~L~~L~Ls~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 428 (461)
.+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+++.....+.. + ...+++++++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3566777777776666532 223344566777777777666443333432 2 2455666555
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=102.65 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=117.7
Q ss_pred CCCcEEEccCCCCcc-cC-------CccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCc
Q 037538 174 TKLEIIRLGTSNLTG-NI-------PAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLK 245 (461)
Q Consensus 174 ~~L~~L~l~~n~l~~-~~-------~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~ 245 (461)
..++.|.+....+.+ .. ..+..++++|+.|.+........- +. .+....+..+...+|+|+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~---is--------~~~~~~L~~ll~~~P~L~ 175 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQE---IS--------WIEQVDLSPVLDAMPLLN 175 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCC---GG--------GCBCCBCHHHHHTCTTCC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcc---cc--------cccccCHHHHHhcCCCCc
Confidence 467788888765442 11 223446789999998765331100 00 000112223333345555
Q ss_pred EEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCC--CCCCCCEEEccc--CcCccc-CCCCchhhhhh--cC
Q 037538 246 IFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFG--SLKDLVRLNFDQ--NELGSR-EIGDLNFLKFL--AN 318 (461)
Q Consensus 246 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-~~~~~~~~~~l--~~ 318 (461)
.|.++++.-. .++. +. .++|++|++..+.+.......+. .+|+|+.|+|+. +...+. ... .+...+ ..
T Consensus 176 ~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~--~l~~~l~~~~ 250 (362)
T 2ra8_A 176 NLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN--VFRPLFSKDR 250 (362)
T ss_dssp EEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG--GTGGGSCTTT
T ss_pred EEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH--HHHHHHhcCC
Confidence 5555544211 1222 22 56777887777766544333332 577788877753 111111 000 111122 34
Q ss_pred CCCCCEEEccCCcCccccchHHHh--ccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccccchhhhc-
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIAN--LSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGSVPEVIGR- 391 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~- 391 (461)
+|+|+.|++.+|.+++..+..+.. ..++|++|+++.|.+.+. ++..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 788888888888877555444443 224888999988888753 3334456788999999999887654444443
Q ss_pred CCCCCeecccccc
Q 037538 392 LNKLEGLELNANK 404 (461)
Q Consensus 392 ~~~L~~L~L~~n~ 404 (461)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3557777776
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-07 Score=88.04 Aligned_cols=314 Identities=10% Similarity=0.036 Sum_probs=132.6
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
....+|+.+.+.. .++..-..+|..|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ +......+|.. .+|+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3345566666643 233233455667777777777543 432333455554 4555555432 22111223333 36666
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
+.+..+- .......+.+. +++.+.+..+ +.......+..+..++...+..+......... ... + .....
T Consensus 118 i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-----~~~--~-~~~~~ 186 (379)
T 4h09_A 118 FEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-----VLY--N-KNKTI 186 (379)
T ss_dssp EECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETT-----EEE--E-TTSSE
T ss_pred ccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccc-----eec--c-cccce
Confidence 6665432 21222223332 4444443332 22122334445555555554433221100000 000 0 00001
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccch
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPI 338 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 338 (461)
...+..+..+..+.+.... .......+..+.+++.+.+..+ +.. ....++.++..|+.+.+..+ ++..-..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~------i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT------LGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp EEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE------ECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred eccccccccccccccccce-eEEeecccccccccceeeeccc-eeE------EccccccCCccceEEEcCCC-ccEeCcc
Confidence 1112223333333333221 1122233444445555554332 111 11123344455555555433 2211111
Q ss_pred HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCcc
Q 037538 339 SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTV 418 (461)
Q Consensus 339 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 418 (461)
.+.... +|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.++.+|+.+.+..+ ++..-..+|.+|++
T Consensus 258 aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 258 LLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 222222 4555555432 22233345556666666666666555444455666666666666543 44333456666666
Q ss_pred CCeeecccccccccCCccCCCCC
Q 037538 419 LSRLLMEENRFEGSIPPSLGNCK 441 (461)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l~ 441 (461)
|+.+.+..+ ++..-..+|.+++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 666666443 3323334555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-06 Score=81.27 Aligned_cols=312 Identities=15% Similarity=0.081 Sum_probs=180.9
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..++.+.+.. +++..-..+|.++.+|+.+++..+ ++..-..+|..+ +|+.+.+..+ +...-...|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 3466666653 355444568999999999999754 554445667776 6888877654 43222334544 48999998
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
..+ +.......+.+. +|+.+.+..+ ++......+..+..++.+.+..+................... ..
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 189 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL--------ES 189 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE--------EE
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee--------cc
Confidence 754 222223344444 5666666543 333344567778888888877654331111000000000000 00
Q ss_pred ccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhc
Q 037538 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317 (461)
Q Consensus 238 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 317 (461)
......+..+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.. -..++.
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I------~~~aF~ 260 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI------GSFLLQ 260 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE------CTTTTT
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe------Cccccc
Confidence 0111222222222211 1122234556677777777654 33344556777788888887654 3321 123566
Q ss_pred CCCCCCEEEccCCcCccccch-HHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCC
Q 037538 318 NCTSLEVLGLAQNGFGGEMPI-SIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLE 396 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 396 (461)
++.+|+.+.+..+ +. .++. .+.... +|+.+.+.++.++..-..+|.+|.+|+.++|..+ ++..-...|.+|.+|+
T Consensus 261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 261 NCTALKTLNFYAK-VK-TVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TCTTCCEEEECCC-CS-EECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeehhcccccccc-ce-ecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 7778888887643 33 2332 333333 8888888888777666678889999999999754 5544456788999999
Q ss_pred eeccccccCcccCChhhhcCccC
Q 037538 397 GLELNANKFSGFMPSSLGNLTVL 419 (461)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L 419 (461)
.+.+..+ ++..-..+|.+++.+
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTSSCC
T ss_pred EEEECCc-cCEEchhHhhCCCCC
Confidence 9999765 554556678777544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=86.47 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=22.6
Q ss_pred cCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCCCCCCEEEccCCcCc
Q 037538 285 NFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 285 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 333 (461)
.+...++|++|+|++| .++..... .+...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~--~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHH--HHHHHHHhCCCcCEEECcCCCCC
Confidence 3444555555555555 55432111 23334444555555555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-10 Score=99.72 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCCCCCEEEccCCcCCC--cCchhhcCCCCCcEEEccCCCCcccCCccCCCCC--CCCEEECccCCCcccCC-------
Q 037538 147 SHCTELRSFEASANDFIG--QIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFS--SLQVLLLARNNLHGSIP------- 215 (461)
Q Consensus 147 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~------- 215 (461)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356677777777777765 4456666777777777777777743 2233333 78888888888876555
Q ss_pred hhhhcCCCCcEEec
Q 037538 216 NELGQLSALGFFTL 229 (461)
Q Consensus 216 ~~l~~l~~L~~L~l 229 (461)
..+..+++|+.|+=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23667788877763
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-08 Score=86.26 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=26.6
Q ss_pred CCCCCeeecccCcCccc----cchhhhcCCCCCeecc--ccccCccc----CChhhhcCccCCeeecccccc
Q 037538 368 LVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLEL--NANKFSGF----MPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 368 l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 429 (461)
.++|++|+|++|.+... +...+...++|++|+| ++|.++.. +.+.+...++|+.|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34444444444444432 2233333444444444 44444422 222333344555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.4e-08 Score=87.73 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=50.3
Q ss_pred hcCCCCCeeecccCcCcc--ccchhhhcCCCCCeeccccccCcccCChhhhcCc--cCCeeecccccccccCCc------
Q 037538 366 ENLVNLSLLGLEGNNLSG--SVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT--VLSRLLMEENRFEGSIPP------ 435 (461)
Q Consensus 366 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 435 (461)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..++ +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777765 3445556677777777777777643 2333333 677777777777765542
Q ss_pred -cCCCCCCCCEEE
Q 037538 436 -SLGNCKKLQVLN 447 (461)
Q Consensus 436 -~l~~l~~L~~L~ 447 (461)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245567777665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-07 Score=79.17 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=48.1
Q ss_pred cccEEEccCCcCcccCchhhhcCCCCCeeecccCc-CccccchhhhcC----CCCCeecccccc-CcccCChhhhcCccC
Q 037538 346 HLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN-LSGSVPEVIGRL----NKLEGLELNANK-FSGFMPSSLGNLTVL 419 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 419 (461)
.|+.|++++|.++..--..+..+++|++|+|++|. +++.--..+... ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56667777666655444445666666666666663 554333334432 356666666663 554444455566666
Q ss_pred Ceeeccccc
Q 037538 420 SRLLMEENR 428 (461)
Q Consensus 420 ~~L~l~~n~ 428 (461)
+.|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-06 Score=70.00 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=48.8
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCc-CccccchHHHhc---cccccEEEccCCc-CcccCchh
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNG-FGGEMPISIANL---STHLRILTMGYNL-MHGNIPVG 364 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~p~~ 364 (461)
..|+.|+++++.++. .-...+.++++|+.|+|++|. +++..-..+... .++|++|++++|. +++.--..
T Consensus 61 ~~L~~LDLs~~~Itd------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCG------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccH------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 356677777766655 333445667777777777764 554443444432 1256666666664 55433344
Q ss_pred hhcCCCCCeeecccCc
Q 037538 365 IENLVNLSLLGLEGNN 380 (461)
Q Consensus 365 ~~~l~~L~~L~Ls~n~ 380 (461)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5556666666666664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=4.7e-05 Score=65.20 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=10.5
Q ss_pred hhhhcCCCCCCEEEccCCcCc
Q 037538 313 LKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 313 ~~~l~~~~~L~~L~L~~n~~~ 333 (461)
..++...+.|+.|+|++|.+.
T Consensus 63 a~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCB
T ss_pred HHHHhhCCCcCEEEccCCCCC
Confidence 344444455555555555554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=7.9e-05 Score=63.78 Aligned_cols=91 Identities=11% Similarity=0.209 Sum_probs=58.7
Q ss_pred hcCCCCCCEEEcccc-ccccc----CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc
Q 037538 262 LSNASNLQVLDFAEN-GLTGT----IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM 336 (461)
Q Consensus 262 l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 336 (461)
+.+-+.|++|++++| .+... +.+.+..-+.|+.|+|++|++++.... .+..++...+.|+.|+|+.|.|++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCHHH
Confidence 445577888888875 66432 334556677888888888888764333 45566777788888888888887544
Q ss_pred chHHHhc---cccccEEEccC
Q 037538 337 PISIANL---STHLRILTMGY 354 (461)
Q Consensus 337 ~~~~~~~---~~~L~~L~l~~ 354 (461)
...+... ...|++|++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHhhCCceeEEECCC
Confidence 3333221 12455555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0025 Score=50.68 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred CeeecccCcCc-cccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccccccc
Q 037538 372 SLLGLEGNNLS-GSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 372 ~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888876 35665443 46888888888888665667788888888888888764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0041 Score=49.45 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=46.6
Q ss_pred cEEEccCCcCc-ccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCc
Q 037538 348 RILTMGYNLMH-GNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFS 406 (461)
Q Consensus 348 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 406 (461)
..++.+++.++ ..+|..+. ++|+.|+|++|+++..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 35665433 57999999999999666677889999999999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 461 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-28 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 7e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 8e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 7e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 111 bits (277), Expect = 4e-28
Identities = 75/301 (24%), Positives = 107/301 (35%), Gaps = 37/301 (12%)
Query: 34 IEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSPSNG--RVTVLKLESKQ 89
DK ALL K L +SSW + CN W+GV C RV L L
Sbjct: 4 NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 90 LVG--SIPASIGNLTNLTGINLFQN-RFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNL 146
L IP+S+ NL L + + G IP I +L +L L +T+ +SG IP L
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 147 SHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206
S L + + S N G +P + SL L I + ++G IP G+FS L +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 207 RNN---------------------------LHGSIPNELGQLSALGFFTLYENFISDVGL 239
N + + F
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 240 TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQ 299
NL N G++P L+ L L+ + N L G IP+ G+L+ +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300
Query: 300 N 300
N
Sbjct: 301 N 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 20/281 (7%)
Query: 168 DQLISLTKLEIIRLGTSNLTGN--IPAWVGNFSSLQVLLLARN-NLHGSIPNELGQLSAL 224
D ++ + L NL IP+ + N L L + NL G IP + +L+ L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 225 GFFTLYENFISDVGLT----LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTG 280
+ + +S + L N +G++P S+S+ NL + F N ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 281 TIPENFGSLKDLVR-LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339
IP+++GS L + +N L + L S E S
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS---------RNMLEGDAS 214
Query: 340 IANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399
+ S + NL+ L L N + G++P+ + +L L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNC 440
++ N G +P GNL N+ P L C
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--LPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.6 bits (140), Expect = 4e-10
Identities = 61/271 (22%), Positives = 96/271 (35%), Gaps = 16/271 (5%)
Query: 195 GNFSSLQVLLLARNNLHG--SIPNELGQLSALGFFTLYENF-----ISDVGLTLPNLKIF 247
+ L L+ NL IP+ L L L F + I L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 248 AGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREI 307
+G+IP LS L LDF+ N L+GT+P + SL +LV + FD N +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN 367
L ++ L +++A + +L +++ G+ +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 368 LVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427
+ N +G L GL+L N+ G +P L L L L + N
Sbjct: 227 HLA--------KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 428 RFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
G IP GN ++ V ++N P
Sbjct: 279 NLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 59 WNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI 118
+ + + L L + ++ G++P + L L +N+ N G+I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 119 PEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCT 150
P + G LQ+ N P L CT
Sbjct: 285 P-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAND 161
NL G++L NR +G +P+ + +L+ L LN+++N L G+IP + + N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
Query: 162 FIGQIP 167
+ P
Sbjct: 303 CLCGSP 308
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 84.7 bits (208), Expect = 1e-18
Identities = 82/372 (22%), Positives = 129/372 (34%), Gaps = 44/372 (11%)
Query: 97 SIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFE 156
S +L +T + + + + L L +N + N L+ P L + T+L
Sbjct: 39 SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94
Query: 157 ASANDFIGQIPDQLISLTKLE---------------IIRLGTSNLTGNIPAWVGNFSSLQ 201
+ N P ++ + L L+ N + + S L
Sbjct: 95 MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154
Query: 202 VLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG--LTLPNLKIFAGGVNYFTGSIP 259
L + L L+ L + N +SD+ L NL+ N + P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214
Query: 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC 319
+ +NL L N L SL +L L+ N++ + L L+
Sbjct: 215 LG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--------LAPLSGL 262
Query: 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGN 379
T L L L N P++ T+ + N I NL NL+ L L N
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFN 317
Query: 380 NLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGN 439
N+S P + L KL+ L NK S SSL NLT ++ L N+ P L N
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371
Query: 440 CKKLQVLNLSSN 451
++ L L+
Sbjct: 372 LTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 34/223 (15%)
Query: 54 QIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNR 113
++ + + +T + L L QL ++ +LTNLT ++L N+
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252
Query: 114 FHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISL 173
P + L KL +L L N +S P N+ + + +L
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL----NENQLEDISPISNL 306
Query: 174 TKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF 233
L + L +N++ P V + + LQ L A N + S + L L+ + + + N
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQ 362
Query: 234 ISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAEN 276
ISD+ L+N + + L +
Sbjct: 363 ISDL----------------------TPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 4e-08
Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 49/343 (14%)
Query: 144 TNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVL 203
T L+ + + + D + Q L +T L+ RLG ++ G V ++L +
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQI 71
Query: 204 LLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263
+ N L P L L+ L + N I+D+ + + + L
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 264 NASNLQVLDFAENGLTG-----------TIPENFGSLKDLVRLNFDQNELGSREIGDLNF 312
N +NL L+ + N ++ + N E ++
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189
Query: 313 LKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLS 372
+ LA T+LE L N P+ I T+L L++ N + + +L NL+
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLT 244
Query: 373 LLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP--------------------SS 412
L L N +S P + L KL L+L AN+ S P S
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302
Query: 413 LGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
+ NL L+ L + N P + + KLQ L ++N ++
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 42 LDFKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSN-GRVTVLKLESKQLVGSIPASIGN 100
L PL +++ + N + SN +T L L + P + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327
Query: 101 LTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASAN 160
LT L + N+ + L + L+ +N +S P L++ T + +
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 5e-05
Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 38/228 (16%)
Query: 261 SLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF----- 315
+ +NL ++F+ N LT P +L LV + + N++
Sbjct: 61 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118
Query: 316 -------------------------LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRIL 350
+++ ++L L Q G + L+ +
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410
+ + + + L NL L N +S P I L+ L LN N+
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--I 234
Query: 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+L +LT L+ L + N+ P L KL L L +N ++ P
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.7 bits (182), Expect = 2e-15
Identities = 51/275 (18%), Positives = 84/275 (30%), Gaps = 12/275 (4%)
Query: 66 CNWVGVTCS-------PSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHG 116
C+ V CS P + +L L++ ++ NL NL + L N+
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 117 QIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKL 176
P L KL+ L L+ N L ELR E + + L + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 177 EIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGF-FTLYENFIS 235
E+ +G L + +A N+ L+ L +
Sbjct: 130 ELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 188
Query: 236 DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRL 295
L NL N + SL+N +L+ L N L +P K + +
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247
Query: 296 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQN 330
N + + D + S + L N
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.2 bits (147), Expect = 5e-11
Identities = 47/284 (16%), Positives = 86/284 (30%), Gaps = 32/284 (11%)
Query: 174 TKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENF 233
++ L + +T N +L L+L N + P L L L +N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 234 ISDVGLTLP-NLKIFAGGVNYFTGSIPVSLSNASNLQVLDF--AENGLTGTIPENFGSLK 290
+ ++ +P L+ N T + + + V++ +G F +K
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 291 DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRIL 350
L + + + G SL L L N S+ L +L L
Sbjct: 151 KLSYIRIADTNITTIPQG---------LPPSLTELHLDGNKITKVDAASLKGL-NNLAKL 200
Query: 351 TMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410
+ +N + + N +L L L N L VP + ++ + L+ N S
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLN 454
+ P ++L SN +
Sbjct: 260 NDF------------------CPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.5 bits (140), Expect = 4e-10
Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 32/258 (12%)
Query: 198 SSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGS 257
+L L N + + L NL N +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNL--------------------KNLHTLILINNKISKI 70
Query: 258 IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
P + + L+ L ++N L + +L++L + ++ LN + +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLE 377
T+ G + + L + + + IP G+ +L+ L L+
Sbjct: 131 LGTN-------PLKSSGIENGAFQGM-KKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 179
Query: 378 GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSL 437
GN ++ + LN L L L+ N S SL N L L + N+ +P L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238
Query: 438 GNCKKLQVLNLSSNNLNG 455
+ K +QV+ L +NN++
Sbjct: 239 ADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 3e-07
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 14/192 (7%)
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 326
+L+V+ ++ GL +P++ D L+ N++ + GD N +L L
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDF------KNLKNLHTLI 61
Query: 327 LAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386
L N P + A L L L + N + + L L + E + SV
Sbjct: 62 LINNKISKISPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120
Query: 387 EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVL 446
+ ++ +E L N K SG + + LS + + + +IP L L L
Sbjct: 121 NGLNQMIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 176
Query: 447 NLSSNNLNGTIP 458
+L N +
Sbjct: 177 HLDGNKITKVDA 188
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 6e-11
Identities = 44/265 (16%), Positives = 73/265 (27%), Gaps = 34/265 (12%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI----- 118
C G+ P + L ++ AS NLT + L N
Sbjct: 18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 119 --------------------PEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158
P L +L L+L L P L+
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNEL 218
N D L L + L + ++ SL LLL +N + P+
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 219 GQLSALGFFTLYENFISDVGLTLP----NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFA 274
L L L+ N +S + L+ N + + + LQ +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGS 256
Query: 275 ENGLTGTIPENFG--SLKDLVRLNF 297
+ + ++P+ LK L +
Sbjct: 257 SSEVPCSLPQRLAGRDLKRLAANDL 281
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 1e-10
Identities = 41/221 (18%), Positives = 72/221 (32%), Gaps = 22/221 (9%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLK-- 314
++PV + + Q + N ++ +F + ++L L N L + L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 315 -----------------FLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLM 357
L L L E+ + L+ L + N +
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 358 HGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLT 417
+L NL+ L L GN +S L+ L+ L L+ N+ + P + +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 418 VLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
L L + N +L + LQ L L+ N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 3e-10
Identities = 53/271 (19%), Positives = 82/271 (30%), Gaps = 18/271 (6%)
Query: 190 IPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSAL----GFFTLYENFISDVGLTLPNLK 245
+P + ++ Q + L N + L + + L L+
Sbjct: 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 246 IFAGGVNYFTGSI-PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGS 304
N S+ P + L L GL P F L L L N L +
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 305 REIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVG 364
+ +L L L N + L L L + N + P
Sbjct: 144 LPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHA 196
Query: 365 IENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424
+L L L L NNLS E + L L+ L LN N + + L +
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRG 255
Query: 425 EENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455
+ S+P L + L++N+L G
Sbjct: 256 SSSEVPCSLPQRLAG---RDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 5e-10
Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 13/198 (6%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 316
++P L + +L +EN L L +LN D+ E ++ L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVDGTLPVL 79
Query: 317 ANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGL 376
+ G +P + R+ ++ + G + L
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG------ 133
Query: 377 EGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS 436
N L P ++ KLE L L N + L L L LL++EN +IP
Sbjct: 134 --NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 437 LGNCKKLQVLNLSSNNLN 454
L L N
Sbjct: 191 FFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 35/229 (15%), Positives = 60/229 (26%), Gaps = 28/229 (12%)
Query: 72 TCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDL 131
S + V + + L ++P + + T ++L +N + + +L L
Sbjct: 5 EVSKVASHLEV-NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 132 NLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP 191
NL + L + + S N + + +P
Sbjct: 61 NL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LP 116
Query: 192 AWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGV 251
L + N ++P L + N
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN------------------- 157
Query: 252 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300
N T L+ NL L EN L TIP+ F L N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 44/190 (23%), Positives = 68/190 (35%), Gaps = 24/190 (12%)
Query: 66 CNWVGVTCSPSN--GRVTVLKLESKQLVGSIPASIGNLTNLTGINL-------------- 109
C+ +T P + T+L L L A++ T LT +NL
Sbjct: 17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 110 -------FQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDF 162
+ +P L L L++++N L+ L EL+ N+
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 163 IGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLS 222
P L KLE + L +NLT + +L LLL N+L+ +IP
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195
Query: 223 ALGFFTLYEN 232
L F L+ N
Sbjct: 196 LLPFAFLHGN 205
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 13/278 (4%)
Query: 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238
+ L NL ++ + + + R+ + + + L + I
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62
Query: 239 L-----TLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFA--ENGLTGTIPENFGSLKD 291
L L+ + + I +L+ SNL L+ + + S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 292 LVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILT 351
L LN + + + T L + G +N ++ + + +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 352 MGYNLMHGNIPVGIENLVNLSLLGLEG-NNLSGSVPEVIGRLNKLEGLELNANKFSGFMP 410
++ + L L L L ++ +G + L+ L++ G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 411 SSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNL 448
L L + + F P++GN K ++ +
Sbjct: 243 LLKEALP---HLQINCSHFTTIARPTIGNKKNQEIWGI 277
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 34/274 (12%), Positives = 70/274 (25%), Gaps = 27/274 (9%)
Query: 95 PASIGNLTNLTGINLFQNRFH-GQIPEEIGRLQKLQDLNLTYNYLSGK-IPTNLSHCTEL 152
P G L + I R Q E ++Q ++L+ + + + LS C++L
Sbjct: 14 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73
Query: 153 RSFEASANDFIGQIPDQLISLTKLEII-------------RLGTSNLTGNIPAWVGNFSS 199
++ I + L + L + + S+ + +
Sbjct: 74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133
Query: 200 LQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIP 259
+ H S LS + + V + +
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193
Query: 260 VSLSNASNLQVLDFAE-NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318
+ LQ L + + G + L L + D
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV------FGIVPDGTLQLLKEA 247
Query: 319 CTSLEVL-----GLAQNGFGGEMPISIANLSTHL 347
L++ +A+ G + I + L
Sbjct: 248 LPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRL 281
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 262 LSNASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLA 317
S L+VL A+ ++ + + + L L+ N LG + G L ++ +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESVR 422
Query: 318 -NCTSLEVLGLAQNGFGGEMPISIANLST---HLRILT 351
LE L L + EM + L LR+++
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 1e-04
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 369 VNLSLLGLEGNNLSGS-VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427
+++ L ++ LS + E++ L + + + L+ + + +
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS------------ 49
Query: 428 RFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPKEV 461
+L L LNL SN L V
Sbjct: 50 --------ALRVNPALAELNLRSNELGDVGVHCV 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 6e-04
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 9/129 (6%)
Query: 56 MSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFH 115
+ HF + + +++ +LE + + L + L
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382
Query: 116 GQ----IPEEIGRLQKLQDLNLTYNYLSGKIPTNLS-----HCTELRSFEASANDFIGQI 166
+ + L++L+L+ N L L L + ++
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442
Query: 167 PDQLISLTK 175
D+L +L K
Sbjct: 443 EDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 7e-04
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 103 NLTGINLFQNRF-HGQIPEEIGRLQKLQDLNLTYNYLSGK----IPTNLSHCTELRSFEA 157
++ +++ + E + LQ+ Q + L L+ I + L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAW 193
+N+ ++ + ++ +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 8e-04
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 318 NCTSLEVLGLAQNGFGGEMPISIANL---STHLRILTMGYNLMHGNIPVGI-----ENLV 369
+ L VL LA S+A + LR L + N + + + +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 370 NLSLLGLEGNNLSGSVPEVIGRLNK 394
L L L S + + + L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.001
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 393 NKLEGLELNANKFSG----FMPSSLGNLTVLSRLLMEENRFEGSIPPSLG-----NCKKL 443
+ L L L S + ++L L L + N + L L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 444 QVLNLSSNNLNGTIPKEV 461
+ L L + + +
Sbjct: 429 EQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 295 LNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL---STHLRILT 351
L+ ++ E+ D + + L +V+ L G I++ + L L
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 352 MGYNLMHGNIPVGIENLVNLSLLGLEGNNLSG 383
+ N + + + ++ +L
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (83), Expect = 0.004
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 357 MHGNIPVGIENLVNLSLLGLEGNNLSG----SVPEVIGRLNKLEGLELNANKFSGFMPSS 412
+ + L +L L ++S S+ + + L L+L+ N
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416
Query: 413 LG-----NLTVLSRLLMEENRFEGSIPPSLG----NCKKLQVL 446
L +L +L++ + + + L + L+V+
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 5e-06
Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 15/216 (6%)
Query: 241 LPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN 300
L N A G + T V+ ++ + L G+T E L +L+ L N
Sbjct: 18 LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73
Query: 301 ELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGN 360
++ + + ++ + + + +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 361 IPVGIENLVNLSLLGLE-------GNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSL 413
+ + + + N+S L N S + L+KL L+ + NK S P L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 414 GNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLS 449
+L L + ++ N+ P L N L ++ L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 27/216 (12%), Positives = 54/216 (25%), Gaps = 26/216 (12%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159
L N I ++ + + L + L+ ++ + + L E
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTG------------------NIPAWVGNFSSLQ 201
N P + ++ + + S+LQ
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 202 VLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVS 261
VL L N + P + L L N + P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 262 LSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNF 297
L++ NL + N ++ P + +L +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 7e-06
Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 4/147 (2%)
Query: 73 CSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEI-GRLQKLQDL 131
C P + L+ + + NLT + + + + L +L++L
Sbjct: 5 CCPHG--SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61
Query: 132 NLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIP 191
+ + L P L S N + L+ E++ G
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121
Query: 192 AWVGNFSSLQVLLLARNNLHGSIPNEL 218
W+ + + + L L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 6e-05
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 348 RILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSG 407
R+L + + + + +E L+ ++ L L N L P + L LE L A+ +
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLE--VLQASDNAL 55
Query: 408 FMPSSLGNLTVLSRLLMEENRFEG-SIPPSLGNCKKLQVLNLSSNNLNG 455
+ NL L LL+ NR + + L +C +L +LNL N+L
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 8e-05
Identities = 23/244 (9%), Positives = 56/244 (22%), Gaps = 23/244 (9%)
Query: 66 CNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRL 125
C+ C ++ IP+ + N + +
Sbjct: 8 CSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF 52
Query: 126 QKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSN 185
L+ + ++ N + I ++ + + L SN
Sbjct: 53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112
Query: 186 --LTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLY------ENFISDV 237
+ + +L + N +I + L+ + +
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172
Query: 238 GLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNF 297
++ N AS +LD + + +LK L +
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Query: 298 DQNE 301
+
Sbjct: 233 YNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.003
Identities = 31/223 (13%), Positives = 51/223 (22%), Gaps = 26/223 (11%)
Query: 257 SIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSR---------EI 307
IP L N L F L F DL ++ QN++
Sbjct: 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 308 GDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIEN 367
++ N + + IS + + + N
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 368 LVNLSL------------LGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGN 415
+ + L L N + E + N
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199
Query: 416 LTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458
+ L + R L N KKL+ + NL +P
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLP 239
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 379 NNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLG 438
N S + + LE L ++ NK P+ L L N +P
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPRLERLI---ASFNHLA-EVPELPQ 324
Query: 439 NCKKLQVLNLSSNNLNG 455
N L+ L++ N L
Sbjct: 325 N---LKQLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 44 FKNHLTQDPLQIMSSWNDSVHFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTN 103
+ L + ++ + + + L + + +L+ +PA L
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER 308
Query: 104 LTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELR 153
L N ++PE L++ L++ YN L + P +LR
Sbjct: 309 L---IASFNHL-AEVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 208 NNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASN 267
N I + +L + N + ++ P L+ N+ +P N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPELP---QN 325
Query: 268 LQVLDFAENGLTGTIPENFGSLKDLVRLN 296
L+ L N L P+ S++DL R+N
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDL-RMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 36.7 bits (83), Expect = 0.004
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 108 NLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIP 167
+ N +I L++LN++ N L ++P L AS N + ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH-LAEVP 320
Query: 168 DQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQV 202
+ +L +L + N P + L++
Sbjct: 321 ELPQNLKQLHV----EYNPLREFPDIPESVEDLRM 351
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 18/210 (8%)
Query: 93 SIPASIG------NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNL 146
++P I NL + + + L + + + + +
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGI 64
Query: 147 SHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206
+ + + N P + + ++ S
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL----- 119
Query: 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNAS 266
+ S N L L L L N I+D+ + K+ + S V L+ +
Sbjct: 120 -EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178
Query: 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLN 296
LQ L ++N ++ LK+L L
Sbjct: 179 KLQNLYLSKNHISD--LRALAGLKNLDVLE 206
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.2 bits (82), Expect = 0.004
Identities = 24/196 (12%), Positives = 51/196 (26%), Gaps = 12/196 (6%)
Query: 100 NLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASA 159
L L + + + L ++ L + + + L S
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71
Query: 160 NDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELG 219
N P + ++ ++ + + L
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 220 QLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLT 279
+L L N ISD+ + + + L+N + L+ LD + N ++
Sbjct: 132 RL------ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 185
Query: 280 GTIPENFGSLKDLVRL 295
L +L L
Sbjct: 186 D--ISVLAKLTNLESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.6 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.27 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.18 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.43 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.29 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.89 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.71 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.5 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=2.6e-40 Score=312.00 Aligned_cols=293 Identities=32% Similarity=0.505 Sum_probs=199.5
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--eeeEEecCCC--CcEEEEEcCCCCccc--ccCccccCCCCCC
Q 037538 32 ATIEADKLALLDFKNHLTQDPLQIMSSWNDSVHFCN--WVGVTCSPSN--GRVTVLKLESKQLVG--SIPASIGNLTNLT 105 (461)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~ 105 (461)
.|.++|++||++||+++. +|. .+++|..++|||. |.||+|+..+ .||++|+|+++++.| .+|++++++++|+
T Consensus 2 ~c~~~e~~aLl~~k~~~~-~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~ 79 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHHCC-CCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence 599999999999999997 443 5889998899994 9999998643 489999999998876 4678888888888
Q ss_pred EEecCC-CCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 106 GINLFQ-NRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 106 ~L~L~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
+|+|++ |+++|.+|.+|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.++++|+++++++|
T Consensus 80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n 159 (313)
T d1ogqa_ 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence 888876 6787788888888888888888888887777777777777888888777777777777777777777777777
Q ss_pred CCcccCCccCCCCCCC-CEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhc
Q 037538 185 NLTGNIPAWVGNFSSL-QVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLS 263 (461)
Q Consensus 185 ~l~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 263 (461)
.+.+.+|..+..+.++ +.++++.|++++..|.. +.
T Consensus 160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~--------------------------------------------~~ 195 (313)
T d1ogqa_ 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------------------------------------------FA 195 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--------------------------------------------GG
T ss_pred cccccccccccccccccccccccccccccccccc--------------------------------------------cc
Confidence 7777677666666554 56666666665544433 33
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhc
Q 037538 264 NASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANL 343 (461)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 343 (461)
.+. ...++++++...+.+|..+..+++++.++++++.+.+ .. ..+..+++|+.|++++|+++|.+|..+..+
T Consensus 196 ~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~------~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L 267 (313)
T d1ogqa_ 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------BG-GGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccc------cc-cccccccccccccCccCeecccCChHHhCC
Confidence 332 3356666666666666666666666666666665543 11 123444555555555555555555544444
Q ss_pred cccccEEEccCCcCcccCchhhhcCCCCCeeecccCc
Q 037538 344 STHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNN 380 (461)
Q Consensus 344 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 380 (461)
+ +|++|++++|+++|.+|+ ++++++|+.+++++|+
T Consensus 268 ~-~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 268 K-FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp T-TCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred C-CCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 3 455555555555544442 3444445555555544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=4.9e-31 Score=248.04 Aligned_cols=256 Identities=28% Similarity=0.507 Sum_probs=181.6
Q ss_pred CCCEEEccCCcCCC--cCchhhcCCCCCcEEEccC-CCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEE
Q 037538 151 ELRSFEASANDFIG--QIPDQLISLTKLEIIRLGT-SNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFF 227 (461)
Q Consensus 151 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 227 (461)
+++.|+++++.+.+ .+|+.++++++|++|++++ |+++|.+|..++++++|++|++++|++.+..+..+..+..|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L--- 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL--- 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC---
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh---
Confidence 56777777777765 4667777777777777775 66777777777777777777777777766555544443332
Q ss_pred ecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCC
Q 037538 228 TLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREI 307 (461)
Q Consensus 228 ~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (461)
+.++++.|.+.+.+|..+.++++++++++++|.+.+.+|..+.
T Consensus 128 -----------------~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-------------------- 170 (313)
T d1ogqa_ 128 -----------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-------------------- 170 (313)
T ss_dssp -----------------CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--------------------
T ss_pred -----------------cccccccccccccCchhhccCcccceeeccccccccccccccc--------------------
Confidence 2333333333444555555555555555555555555444443
Q ss_pred CCchhhhhhcCCCCC-CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccc
Q 037538 308 GDLNFLKFLANCTSL-EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVP 386 (461)
Q Consensus 308 ~~~~~~~~l~~~~~L-~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 386 (461)
.+..+ +.+++++|++++..|..+..+ ....+++..+...+.+|..+..+++++.+++++|.+.+.++
T Consensus 171 ----------~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 238 (313)
T d1ogqa_ 171 ----------SFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp ----------CCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred ----------ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 33333 566666777766666666555 45678888888888888888888999999999999987655
Q ss_pred hhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCC-Cccc-CCCC
Q 037538 387 EVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNN-LNGT-IPKE 460 (461)
Q Consensus 387 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~-ip~~ 460 (461)
.++.+++|+.|++++|+++|.+|+.|+++++|+.|+|++|+++|.+|+ +.++++|+.+++++|+ +.|. +|+.
T Consensus 239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~c 312 (313)
T d1ogqa_ 239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCCC
Confidence 577888999999999999999999999999999999999999998885 5778899999999998 5664 6653
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=6e-28 Score=233.14 Aligned_cols=338 Identities=27% Similarity=0.319 Sum_probs=233.4
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
..+++|++++++++. + +.+..+++|++|++++|++++ ++. +.++++|++|++++|.+.+ ++ .++.+++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Ccc-ccCCccccccccccccccc-cc-ccccccccccccc
Confidence 356777777776653 2 345667777777777777763 332 6677777777777777663 22 2666777777777
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCch--
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFIS-- 235 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-- 235 (461)
+++.+++..+ ......+.......+.+....+................ .....+.............|...
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (384)
T d2omza2 118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVSDI 190 (384)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccccc
Confidence 7666654322 23344555555555544422221111111111111111 11123344444444555544432
Q ss_pred hhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 236 DVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 236 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
.....+++++.+.++.|.+++..| ...+++|++|++++|.++.. +.+..+++|+.+++++|++++. ..
T Consensus 191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~ 258 (384)
T d2omza2 191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--------AP 258 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GG
T ss_pred cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC--------Cc
Confidence 233457888999999998887654 45678999999999998753 4678899999999999998763 23
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+++|+.|+++++.+++..+ +..+. .++.+.+..|.+.+ + ..+..+++++.|++++|++++.. .+..+++|
T Consensus 259 ~~~~~~L~~L~l~~~~l~~~~~--~~~~~-~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L 331 (384)
T d2omza2 259 LSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 331 (384)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred ccccccCCEeeccCcccCCCCc--ccccc-cccccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCC
Confidence 6778999999999999885432 44454 89999999999885 3 35788999999999999999653 37889999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCC
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSN 451 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 451 (461)
+.|++++|++++ ++ .+.++++|+.|++++|++++..| +.++++|+.|++++|
T Consensus 332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999999984 44 68999999999999999997654 889999999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3.7e-26 Score=220.43 Aligned_cols=316 Identities=25% Similarity=0.316 Sum_probs=234.2
Q ss_pred CcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 037538 78 GRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEA 157 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 157 (461)
.++++|++++|.+++. + .+.++++|++|++++|.+.+ ++ .+..+++|+.|+++++.+++..+ ......+.....
T Consensus 66 ~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~ 139 (384)
T d2omza2 66 NNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 139 (384)
T ss_dssp TTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred CCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-cc-ccccccccccccccccccccccc--cccccccccccc
Confidence 6799999999999854 3 38999999999999999984 44 38899999999999998874332 345567777777
Q ss_pred cCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh
Q 037538 158 SANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV 237 (461)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 237 (461)
..+.+....+.................. ...+...+.........+... .......+++++.+++++|.+..+
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~ 212 (384)
T d2omza2 140 SSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDI 212 (384)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCC
T ss_pred ccccccccccccccccccccccccccch-----hhhhccccccccccccccccc--cccccccccccceeeccCCccCCC
Confidence 7776654333322222233332222221 122334455555555555543 334566777788888887776554
Q ss_pred c--cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhh
Q 037538 238 G--LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKF 315 (461)
Q Consensus 238 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (461)
. ...++|+.+++++|.++. + ..+..+++|+.+++++|.+++.. .+..+++|++++++++++.+. ..
T Consensus 213 ~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--------~~ 280 (384)
T d2omza2 213 TPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--------SP 280 (384)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--------GG
T ss_pred CcccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC--------Cc
Confidence 2 346778888888888775 2 35778899999999999988654 378889999999999988753 23
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..++.++.++++.|.+++ ++ .+..+. +++.+++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|
T Consensus 281 ~~~~~~l~~l~~~~n~l~~-~~-~~~~~~-~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L 353 (384)
T d2omza2 281 LAGLTALTNLELNENQLED-IS-PISNLK-NLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNI 353 (384)
T ss_dssp GTTCTTCSEEECCSSCCSC-CG-GGGGCT-TCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred ccccccccccccccccccc-cc-ccchhc-ccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCC
Confidence 6678899999999999875 22 345554 8999999999998643 37889999999999999984 44 58899999
Q ss_pred CeeccccccCcccCChhhhcCccCCeeecccc
Q 037538 396 EGLELNANKFSGFMPSSLGNLTVLSRLLMEEN 427 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 427 (461)
++|++++|++++..| +.++++|+.|+|++|
T Consensus 354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999999996544 889999999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=4.1e-25 Score=206.40 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeec
Q 037538 320 TSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399 (461)
Q Consensus 320 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 399 (461)
++|+.|++++|..++..+..+...+ .+++|++++|.+.+..+..+.++++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 171 ~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 171 PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248 (305)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred CccCEEECCCCcCCCCChhHhhccc-cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence 3444444444444433333333332 4444444444444444444444555555555555544 3344444455555555
Q ss_pred cccccCc
Q 037538 400 LNANKFS 406 (461)
Q Consensus 400 L~~n~l~ 406 (461)
+++|+++
T Consensus 249 Ls~N~i~ 255 (305)
T d1xkua_ 249 LHNNNIS 255 (305)
T ss_dssp CCSSCCC
T ss_pred CCCCccC
Confidence 5555544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.1e-24 Score=203.40 Aligned_cols=274 Identities=20% Similarity=0.252 Sum_probs=201.4
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECc
Q 037538 127 KLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLA 206 (461)
Q Consensus 127 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (461)
.++.++-++.+++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+....|..+.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 6677888888887 7777664 678888888888875545568888888888888888886667778888888888888
Q ss_pred cCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccC
Q 037538 207 RNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENF 286 (461)
Q Consensus 207 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 286 (461)
+|+++ .+|..+ ...++.|++.+|.+.+..+..+
T Consensus 88 ~n~l~-~l~~~~----------------------------------------------~~~l~~L~~~~n~l~~l~~~~~ 120 (305)
T d1xkua_ 88 KNQLK-ELPEKM----------------------------------------------PKTLQELRVHENEITKVRKSVF 120 (305)
T ss_dssp SSCCS-BCCSSC----------------------------------------------CTTCCEEECCSSCCCBBCHHHH
T ss_pred CCccC-cCccch----------------------------------------------hhhhhhhhccccchhhhhhhhh
Confidence 88776 333211 1234444444444443333334
Q ss_pred CCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhh
Q 037538 287 GSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIE 366 (461)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 366 (461)
.....+..+....+...... .....+..+++|+.+++++|.+. .+|..+ .++++.|++++|..++..+..+.
T Consensus 121 ~~~~~~~~l~~~~n~~~~~~----~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~ 192 (305)
T d1xkua_ 121 NGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLK 192 (305)
T ss_dssp TTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGT
T ss_pred hccccccccccccccccccC----CCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhh
Confidence 44445555555544332211 22334566777888888888776 444332 34899999999999998999999
Q ss_pred cCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCcc------CCCC
Q 037538 367 NLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPS------LGNC 440 (461)
Q Consensus 367 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~------l~~l 440 (461)
.++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.+|..+++|+.|++++|+|+..-... +...
T Consensus 193 ~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~ 271 (305)
T d1xkua_ 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271 (305)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhccc
Confidence 9999999999999999888889999999999999999998 67889999999999999999998543233 3457
Q ss_pred CCCCEEEccCCCCc-ccCCC
Q 037538 441 KKLQVLNLSSNNLN-GTIPK 459 (461)
Q Consensus 441 ~~L~~L~ls~N~l~-~~ip~ 459 (461)
.+|+.|++++|++. ..+|+
T Consensus 272 ~~L~~L~L~~N~~~~~~~~~ 291 (305)
T d1xkua_ 272 ASYSGVSLFSNPVQYWEIQP 291 (305)
T ss_dssp CCCSEEECCSSSSCGGGSCG
T ss_pred CCCCEEECCCCcCccCcCCH
Confidence 88999999999985 45553
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.8e-24 Score=195.84 Aligned_cols=205 Identities=23% Similarity=0.184 Sum_probs=96.6
Q ss_pred CCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECcc-CCCcccCChhhhcCCCCcEEec
Q 037538 151 ELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLAR-NNLHGSIPNELGQLSALGFFTL 229 (461)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l 229 (461)
.+++|++++|+++...+..|.++++|++|++++|.+....+..+..++.++.++... +.+....+..+..+++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 345555555555433333455555555555555555544444444444555544332 2222222222333222222222
Q ss_pred CCCCchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCC
Q 037538 230 YENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGD 309 (461)
Q Consensus 230 ~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 309 (461)
++|. +....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++...
T Consensus 113 ~~n~--------------------~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l---- 168 (284)
T d1ozna_ 113 DRCG--------------------LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV---- 168 (284)
T ss_dssp TTSC--------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE----
T ss_pred CCcc--------------------cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc----
Confidence 2221 1111222344455666666666666655555555555555555555555441
Q ss_pred chhhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhh
Q 037538 310 LNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVI 389 (461)
Q Consensus 310 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l 389 (461)
.+.++.++++|+.++++ +|.+++..|..|..+++|++|++++|.+.+..+..+
T Consensus 169 --~~~~f~~l~~L~~l~l~-------------------------~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~ 221 (284)
T d1ozna_ 169 --PERAFRGLHSLDRLLLH-------------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (284)
T ss_dssp --CTTTTTTCTTCCEEECC-------------------------SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred --chhhhccccccchhhhh-------------------------hccccccChhHhhhhhhccccccccccccccccccc
Confidence 12233444444444444 444444444555555555555555555555444555
Q ss_pred hcCCCCCeeccccccCc
Q 037538 390 GRLNKLEGLELNANKFS 406 (461)
Q Consensus 390 ~~~~~L~~L~L~~n~l~ 406 (461)
..+++|++|++++|++.
T Consensus 222 ~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 222 APLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccccCEEEecCCCCC
Confidence 55555555555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.2e-23 Score=191.32 Aligned_cols=221 Identities=21% Similarity=0.211 Sum_probs=159.4
Q ss_pred cCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc-CCcCC
Q 037538 85 LESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS-ANDFI 163 (461)
Q Consensus 85 l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~-~n~~~ 163 (461)
.++.+++ .+|..+. +.+++|+|++|+|+...+.+|..+++|++|++++|.+....+..+..+..++.+... .+.+.
T Consensus 18 c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 18 CPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp CCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 3444454 5565543 578999999999986666678899999999999999887777778888888888765 44555
Q ss_pred CcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCC
Q 037538 164 GQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPN 243 (461)
Q Consensus 164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~ 243 (461)
...+..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..+..+++|+.|++++
T Consensus 95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~------------ 162 (284)
T d1ozna_ 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG------------ 162 (284)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS------------
T ss_pred cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc------------
Confidence 55577788889999999999888766666777788888888888888855555555544444444444
Q ss_pred CcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCC
Q 037538 244 LKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 323 (461)
Q Consensus 244 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~ 323 (461)
|.+++..+..+.++++|+++++++|.+++..|..|..+++|++|++++|++.+ ..+.++.++++|+
T Consensus 163 --------N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~L~ 228 (284)
T d1ozna_ 163 --------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------LPTEALAPLRALQ 228 (284)
T ss_dssp --------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------CCHHHHTTCTTCC
T ss_pred --------CcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc------ccccccccccccC
Confidence 44444444566677777777777777777777777777777777777777765 3445666777777
Q ss_pred EEEccCCcCcc
Q 037538 324 VLGLAQNGFGG 334 (461)
Q Consensus 324 ~L~L~~n~~~~ 334 (461)
.|++++|.+..
T Consensus 229 ~L~l~~N~l~C 239 (284)
T d1ozna_ 229 YLRLNDNPWVC 239 (284)
T ss_dssp EEECCSSCEEC
T ss_pred EEEecCCCCCC
Confidence 77777776654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.4e-22 Score=181.64 Aligned_cols=176 Identities=26% Similarity=0.318 Sum_probs=95.9
Q ss_pred CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcccc
Q 037538 267 NLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTH 346 (461)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~ 346 (461)
++++|+|++|.+++..+..|..+++|++|+|++|+++..+ .+..+++|++|++++|++++ .+..+..++ +
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~ 101 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------VDGTLPVLGTLDLSHNQLQS-LPLLGQTLP-A 101 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--------CCSCCTTCCEEECCSSCCSS-CCCCTTTCT-T
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--------cccccccccccccccccccc-ccccccccc-c
Confidence 4555555555555444444555555555555555544311 12334555555555555542 233333333 5
Q ss_pred ccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeeccc
Q 037538 347 LRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEE 426 (461)
Q Consensus 347 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 426 (461)
|++|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++++.+++++|++++..++.|..+++|+.|+|++
T Consensus 102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 181 (266)
T d1p9ag_ 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (266)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence 55555555555544445555556666666666666544444555566666666666666655555566666666666666
Q ss_pred ccccccCCccCCCCCCCCEEEccCCCC
Q 037538 427 NRFEGSIPPSLGNCKKLQVLNLSSNNL 453 (461)
Q Consensus 427 n~l~~~~p~~l~~l~~L~~L~ls~N~l 453 (461)
|+|+ .+|+.+..+++|+.|++++|++
T Consensus 182 N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 6665 5565555666666666666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.1e-21 Score=175.89 Aligned_cols=177 Identities=21% Similarity=0.182 Sum_probs=120.7
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSL 322 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L 322 (461)
++++|++++|.+++..+..+.++++|++|++++|.++.. + .++.+++|++|++++|+++.. +..+..+++|
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~l~~L 102 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQSL-------PLLGQTLPAL 102 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSSC-------CCCTTTCTTC
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccccc-------cccccccccc
Confidence 455666666666554455677777777777777777633 2 345677777777777777642 2345666777
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.|++++|.+.+..+..+..+. ++++|++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|+|++
T Consensus 103 ~~L~l~~~~~~~~~~~~~~~l~-~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 181 (266)
T d1p9ag_ 103 TVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (266)
T ss_dssp CEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccccccceeecccccccc-ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence 7777777777644444444443 777777777777766666666777777777777777766666677777777777777
Q ss_pred ccCcccCChhhhcCccCCeeeccccccc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFE 430 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 430 (461)
|+++ .+|+.+..+++|+.|+|++|++.
T Consensus 182 N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 7777 67777777777777777777654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=3.7e-19 Score=168.52 Aligned_cols=313 Identities=24% Similarity=0.271 Sum_probs=211.2
Q ss_pred cEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcc
Q 037538 79 RVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEAS 158 (461)
Q Consensus 79 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 158 (461)
++++|++++++++ .+|+. .++|++|++++|+++ .+|.. +.+|+.|++++|+++ .++.. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 4678999999987 56753 578999999999998 77764 458999999999887 44432 1469999999
Q ss_pred CCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhc
Q 037538 159 ANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVG 238 (461)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 238 (461)
+|.+. .+|. ++.+++|++|+++++.+.. .+. ....+..+.+..+.... ...+..++.++.+.+..|......
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~ 178 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP 178 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred ccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhccccccc--cccccccccceecccccccccccc
Confidence 99987 4554 6789999999999988873 332 24567788887766542 345777888899999888877665
Q ss_pred cCCCCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcC
Q 037538 239 LTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN 318 (461)
Q Consensus 239 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 318 (461)
......+.+....+.+. .++ ....++.++.+++++|.... .+ ....++..+.+..+.+.... ..
T Consensus 179 ~~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~----------~~ 242 (353)
T d1jl5a_ 179 DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLP----------EL 242 (353)
T ss_dssp CCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCC----------CC
T ss_pred ccccccccccccccccc-ccc-cccccccccccccccccccc-cc---cccccccccccccccccccc----------cc
Confidence 54455556665555443 232 35567888888888876542 22 33456777777777665421 12
Q ss_pred CCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCee
Q 037538 319 CTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGL 398 (461)
Q Consensus 319 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 398 (461)
.+.+...++..+.+.+. ..++......++..+.+.+. ...+++|++|++++|+++ .+|.. +++|+.|
T Consensus 243 ~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L 309 (353)
T d1jl5a_ 243 PQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERL 309 (353)
T ss_dssp CTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred ccccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEE
Confidence 34566677666655421 12222455666666666532 233577888888888887 56643 4678888
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEc
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNL 448 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 448 (461)
++++|+++ .+|+. +++|+.|++++|+++ .+|... ..|+.|.+
T Consensus 310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence 88888887 45643 456788888888876 566532 34555554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-22 Score=200.28 Aligned_cols=377 Identities=17% Similarity=0.115 Sum_probs=262.8
Q ss_pred CcEEEEEcCCCCccccc-CccccCCCCCCEEecCCCCCcc----cCchhccCCCCCCEEeCCCCCCCCC----CCcCCC-
Q 037538 78 GRVTVLKLESKQLVGSI-PASIGNLTNLTGINLFQNRFHG----QIPEEIGRLQKLQDLNLTYNYLSGK----IPTNLS- 147 (461)
Q Consensus 78 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~- 147 (461)
.+++.||++++++.+.. ...+..+++++.|+|++|.++. .+...+..+++|++|+|++|.++.. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999997542 3445678999999999999874 2456678899999999999988521 222332
Q ss_pred CCCCCCEEEccCCcCCCc----CchhhcCCCCCcEEEccCCCCcccCCcc----CC-CCCCCCEEECccCCCccc----C
Q 037538 148 HCTELRSFEASANDFIGQ----IPDQLISLTKLEIIRLGTSNLTGNIPAW----VG-NFSSLQVLLLARNNLHGS----I 214 (461)
Q Consensus 148 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~L~l~~n~~~~~----~ 214 (461)
...+|++|++++|.+++. ++..+..+++|++|++++|.++...... +. .................. .
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 345899999999998753 4566788999999999999887432111 11 223444555555444311 1
Q ss_pred ChhhhcCCCCcEEecCCCCchhh---------ccCCCCCcEEEccCccCccc----cChhhcCCCCCCEEEccccccccc
Q 037538 215 PNELGQLSALGFFTLYENFISDV---------GLTLPNLKIFAGGVNYFTGS----IPVSLSNASNLQVLDFAENGLTGT 281 (461)
Q Consensus 215 ~~~l~~l~~L~~L~l~~n~l~~~---------~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~ 281 (461)
...+.....++.+.++.+..... .........+....+.+... ....+...+.++.+++.+|.+...
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 13345667888899888776432 12234566777777765432 223455678999999999876432
Q ss_pred -----CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHH----hccccccEEEc
Q 037538 282 -----IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIA----NLSTHLRILTM 352 (461)
Q Consensus 282 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~----~~~~~L~~L~l 352 (461)
..........++.+++++|.+...... .....+...+.++.+++++|.++......+. .....|+.+++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l 319 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 319 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred ccchhhcccccccccccccccccccccccccc--cccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 233456678999999999988753221 3445567789999999999998754333332 22347999999
Q ss_pred cCCcCcccCch----hhhcCCCCCeeecccCcCccc----cchhhh-cCCCCCeeccccccCccc----CChhhhcCccC
Q 037538 353 GYNLMHGNIPV----GIENLVNLSLLGLEGNNLSGS----VPEVIG-RLNKLEGLELNANKFSGF----MPSSLGNLTVL 419 (461)
Q Consensus 353 ~~n~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~----~~~~l~-~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L 419 (461)
++|.++..... .+...++|++|+|++|++++. +++.+. ..+.|+.|+|++|++++. +++.+..+++|
T Consensus 320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 399 (460)
T d1z7xw1 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399 (460)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence 99998765333 344567899999999999754 333443 467799999999999853 45567788999
Q ss_pred CeeecccccccccCCcc----CC-CCCCCCEEEccCCCCccc
Q 037538 420 SRLLMEENRFEGSIPPS----LG-NCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~----l~-~l~~L~~L~ls~N~l~~~ 456 (461)
++|+|++|+|++..... +. +...|+.|++.+|.+.+.
T Consensus 400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence 99999999998643332 32 345799999999998754
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=3.2e-18 Score=161.99 Aligned_cols=302 Identities=23% Similarity=0.281 Sum_probs=206.4
Q ss_pred CCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEc
Q 037538 102 TNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRL 181 (461)
Q Consensus 102 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 181 (461)
.++++|+++++.++ .+|+. +++|++|++++|+++ .+|..+ .+|+.|++++|+++. +++ + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 47899999999998 67853 568999999999998 778654 578999999998763 332 1 146999999
Q ss_pred cCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhh--ccCCCCCcEEEccCccCccccC
Q 037538 182 GTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDV--GLTLPNLKIFAGGVNYFTGSIP 259 (461)
Q Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~l~~L~~L~l~~n~~~~~~~ 259 (461)
++|.+. .+|. ++.+++|++++++++.+... +.. ...+..+.+..+..... ...++.++.+.++.|.......
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~ 179 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 179 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred cccccc-cccc-hhhhccceeecccccccccc-ccc---cccccchhhccccccccccccccccceeccccccccccccc
Confidence 999988 5564 67889999999999988733 322 34556666655544322 2346677888888777653221
Q ss_pred hhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchH
Q 037538 260 VSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPIS 339 (461)
Q Consensus 260 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 339 (461)
.....+.+...++.+. .. ..+..++.|+.+++++|...... ....++..+.+.++.+... +.
T Consensus 180 ----~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~~~----------~~~~~l~~~~~~~~~~~~~-~~- 241 (353)
T d1jl5a_ 180 ----LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKTLP----------DLPPSLEALNVRDNYLTDL-PE- 241 (353)
T ss_dssp ----CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSSCC----------SCCTTCCEEECCSSCCSCC-CC-
T ss_pred ----cccccccccccccccc-cc-ccccccccccccccccccccccc----------ccccccccccccccccccc-cc-
Confidence 1233455555555443 22 33567788888888887665421 2235677788887776532 21
Q ss_pred HHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccC
Q 037538 340 IANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVL 419 (461)
Q Consensus 340 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 419 (461)
....+...++..+.+.+.. . -.......++..+.+.+ + ...+++|++|++++|+++ .+|.. +++|
T Consensus 242 ---~~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~-~---~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L 306 (353)
T d1jl5a_ 242 ---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-L---CDLPPSLEELNVSNNKLI-ELPAL---PPRL 306 (353)
T ss_dssp ---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-E---CCCCTTCCEEECCSSCCS-CCCCC---CTTC
T ss_pred ---ccccccccccccccccccc-c---ccchhcccccccCcccc-c---cccCCCCCEEECCCCccC-ccccc---cCCC
Confidence 1235666776666654321 1 11344566666666663 2 234689999999999998 57743 5789
Q ss_pred CeeecccccccccCCccCCCCCCCCEEEccCCCCcccCCC
Q 037538 420 SRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIPK 459 (461)
Q Consensus 420 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip~ 459 (461)
+.|++++|+|+ .+|+. +++|+.|++++|++. ++|.
T Consensus 307 ~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 307 ERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp CEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred CEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence 99999999998 67764 468999999999987 6663
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.8e-21 Score=188.26 Aligned_cols=351 Identities=19% Similarity=0.191 Sum_probs=237.2
Q ss_pred CCCEEecCCCCCccc-CchhccCCCCCCEEeCCCCCCCC----CCCcCCCCCCCCCEEEccCCcCCCc----Cchhhc-C
Q 037538 103 NLTGINLFQNRFHGQ-IPEEIGRLQKLQDLNLTYNYLSG----KIPTNLSHCTELRSFEASANDFIGQ----IPDQLI-S 172 (461)
Q Consensus 103 ~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~-~ 172 (461)
+|+.||++++++++. +..-+..++++++|+|++|.++. .++..+..+++|++|++++|.++.. +.+.+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 578999999999863 23445678899999999998873 3345567899999999999987532 222232 2
Q ss_pred CCCCcEEEccCCCCccc----CCccCCCCCCCCEEECccCCCcccCChhhh-----cCCCCcEEecCCCCchh-------
Q 037538 173 LTKLEIIRLGTSNLTGN----IPAWVGNFSSLQVLLLARNNLHGSIPNELG-----QLSALGFFTLYENFISD------- 236 (461)
Q Consensus 173 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~------- 236 (461)
..+|++|++++|.+++. ++..+..+++|++|++++|.++......+. .................
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999998754 345677889999999999998743222221 11223334444333311
Q ss_pred -hccCCCCCcEEEccCccCcccc----Chhh-cCCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCcccC
Q 037538 237 -VGLTLPNLKIFAGGVNYFTGSI----PVSL-SNASNLQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSRE 306 (461)
Q Consensus 237 -~~~~l~~L~~L~l~~n~~~~~~----~~~l-~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~ 306 (461)
.....+.++.+.++.+...... ...+ ........+++.++.+... ....+...+.++.+.+..|.+....
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 1123567788888877654321 1111 2234667788887765422 1123456788999999998875421
Q ss_pred CCCchhhhhhcCCCCCCEEEccCCcCccccc----hHHHhccccccEEEccCCcCcccCchhh-----hcCCCCCeeecc
Q 037538 307 IGDLNFLKFLANCTSLEVLGLAQNGFGGEMP----ISIANLSTHLRILTMGYNLMHGNIPVGI-----ENLVNLSLLGLE 377 (461)
Q Consensus 307 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~Ls 377 (461)
... ...........++.+++++|.+..... ..+.... .++.+++++|.++......+ .....|+.++++
T Consensus 243 ~~~-~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~-~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 243 MAE-LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred cch-hhcccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhcccccccccccccccc
Confidence 110 223445567899999999998864322 2333443 89999999999875332222 234689999999
Q ss_pred cCcCccccch----hhhcCCCCCeeccccccCccc----CChhhh-cCccCCeeeccccccccc----CCccCCCCCCCC
Q 037538 378 GNNLSGSVPE----VIGRLNKLEGLELNANKFSGF----MPSSLG-NLTVLSRLLMEENRFEGS----IPPSLGNCKKLQ 444 (461)
Q Consensus 378 ~n~l~~~~~~----~l~~~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~ 444 (461)
+|.++..... .+...++|++|+|++|++++. +++.+. ..+.|+.|++++|.|++. +++.+..+++|+
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence 9999865433 344567999999999999754 334443 467899999999999853 455677789999
Q ss_pred EEEccCCCCcc
Q 037538 445 VLNLSSNNLNG 455 (461)
Q Consensus 445 ~L~ls~N~l~~ 455 (461)
.||+++|+|+.
T Consensus 401 ~L~Ls~N~i~~ 411 (460)
T d1z7xw1 401 ELDLSNNCLGD 411 (460)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCcCCH
Confidence 99999999874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=4.6e-17 Score=144.26 Aligned_cols=188 Identities=22% Similarity=0.359 Sum_probs=108.5
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..+.+|++|++.+|+++ .++ .+..+++|++|++++|.+++.. .+..+++|+++++++|.++. + +.+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccc
Confidence 44566666666666665 342 3666666666666666665322 25666666666666665542 2 24556666666
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCcccc
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSI 258 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~ 258 (461)
++++++...+. ..+...+.++.+.++.+.+... ..+..+++|+.|++++| .+++.
T Consensus 112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n--------------------~~~~~- 166 (227)
T d1h6ua2 112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNA--------------------QVSDL- 166 (227)
T ss_dssp EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSS--------------------CCCCC-
T ss_pred ccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccc--------------------ccccc-
Confidence 66666655432 2244556666666666665432 22444444555544444 33321
Q ss_pred ChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEcc
Q 037538 259 PVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLA 328 (461)
Q Consensus 259 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 328 (461)
..++++++|++|++++|.+++. + .+..+++|++|++++|++++. ..+.++++|+.|+++
T Consensus 167 -~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i--------~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 -TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV--------SPLANTSNLFIVTLT 225 (227)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC--------GGGTTCTTCCEEEEE
T ss_pred -hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC--------cccccCCCCCEEEee
Confidence 1255667777777777766642 2 366667777777777776642 125667777777765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=4.6e-17 Score=144.26 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=138.3
Q ss_pred CCCcEEEccCccCccccChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCC
Q 037538 242 PNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 321 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 321 (461)
.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..+ +..+++++.+++++|.++.. ..+.++++
T Consensus 41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--------~~l~~l~~ 108 (227)
T d1h6ua2 41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------SAIAGLQS 108 (227)
T ss_dssp HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------GGGTTCTT
T ss_pred CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--------cccccccc
Confidence 345555555555543 2 247778888888888888875433 78888888888888877642 24667888
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELN 401 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 401 (461)
|+.++++++...+..+ +...+ .++.+.++.+.+... ..+..+++|+.|++++|.+.+.. .++++++|+.|+++
T Consensus 109 L~~l~l~~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls 181 (227)
T d1h6ua2 109 IKTLDLTSTQITDVTP--LAGLS-NLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKAD 181 (227)
T ss_dssp CCEEECTTSCCCCCGG--GTTCT-TCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred ccccccccccccccch--hcccc-chhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccC
Confidence 9999998887764322 23333 788888888887643 34677889999999999887443 37889999999999
Q ss_pred cccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccC
Q 037538 402 ANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSS 450 (461)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~ 450 (461)
+|++++ ++ .++++++|+.|++++|++++. + .+.++++|+.|++++
T Consensus 182 ~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 182 DNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp SSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred CCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 999885 33 488899999999999999854 4 378899999999874
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-17 Score=148.52 Aligned_cols=206 Identities=14% Similarity=0.092 Sum_probs=132.6
Q ss_pred CCcEEEccCccCccccChhhcCCCCCCEEEcccccccccC-CccCCCCCCCCEEEccc-CcCcccCCCCchhhhhhcCCC
Q 037538 243 NLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI-PENFGSLKDLVRLNFDQ-NELGSREIGDLNFLKFLANCT 320 (461)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~~ 320 (461)
++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..+++++++.+.. |.+.. ..+..+.+++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~------~~~~~~~~l~ 103 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY------INPEAFQNLP 103 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE------ECTTSEECCT
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc------cccccccccc
Confidence 5666666666666444456777888888888888776543 34677778888887764 45544 2334567778
Q ss_pred CCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCC-CCCeeecccCcCccccchhhhcCCCCCe-e
Q 037538 321 SLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLV-NLSLLGLEGNNLSGSVPEVIGRLNKLEG-L 398 (461)
Q Consensus 321 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~~~~L~~-L 398 (461)
+|+.+++++|++....+.........+..+...++.+....+..+..++ .++.+++++|+++. ++.......+++. +
T Consensus 104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~ 182 (242)
T d1xwdc1 104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELN 182 (242)
T ss_dssp TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEE
T ss_pred cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccc
Confidence 8888888888776332222211112455555566666655455555543 67788888888884 4433334445444 4
Q ss_pred ccccccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 399 ELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
.+.+|+++..-+..|..+++|++|++++|+++...+..|.++++|+.+++.+.+ ++|
T Consensus 183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~---~lp 239 (242)
T d1xwdc1 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239 (242)
T ss_dssp CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS---CSC
T ss_pred cccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC---cCC
Confidence 567788875445568888999999999999885445567777777777765432 555
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.2e-16 Score=139.68 Aligned_cols=165 Identities=27% Similarity=0.384 Sum_probs=122.2
Q ss_pred CCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccccchHHHhcc
Q 037538 265 ASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEMPISIANLS 344 (461)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 344 (461)
+.+|++|++++|.++.. ..+..+++|++|++++|++++.. .+..+++|+.|++++|++++ ++ .+..++
T Consensus 45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--------~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~ 112 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--------PLANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (210)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--------ccccCccccccccccccccc-cc-cccccc
Confidence 45677777777777643 23667778888888887776521 24567788888888887763 44 355554
Q ss_pred ccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeec
Q 037538 345 THLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLM 424 (461)
Q Consensus 345 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 424 (461)
+|+.+++++|.+.. + ..+..++.++.+++++|.+++. ..+..+++|+.+++++|++++ ++ .++++++|+.|++
T Consensus 113 -~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 113 -KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYL 185 (210)
T ss_dssp -TCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred -cccccccccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEEC
Confidence 78888888887763 3 3577888899999999888743 346778899999999999885 33 4788999999999
Q ss_pred ccccccccCCccCCCCCCCCEEEccC
Q 037538 425 EENRFEGSIPPSLGNCKKLQVLNLSS 450 (461)
Q Consensus 425 ~~n~l~~~~p~~l~~l~~L~~L~ls~ 450 (461)
++|++++ +| .+.++++|+.|++++
T Consensus 186 s~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 9999874 55 588899999999875
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.5e-17 Score=150.02 Aligned_cols=209 Identities=19% Similarity=0.214 Sum_probs=116.7
Q ss_pred CCCcEEEccCccCccc-cChhhcCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCC
Q 037538 242 PNLKIFAGGVNYFTGS-IPVSLSNASNLQVLDFAENGLTGTIPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANC 319 (461)
Q Consensus 242 ~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~ 319 (461)
.+|++++++++.++.. ++..+..+++|++|+++++.+++..+..+..+++|++|+++++ .+++. .+...+..+
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~l~~~~ 120 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSSC 120 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHHC
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccchhhHHH
Confidence 3555666665555433 2334556677777777777666665666666677777777664 34431 223334556
Q ss_pred CCCCEEEccCC-cCccc-cchHHHhccccccEEEccCCc--Cccc-CchhhhcCCCCCeeecccCc-CccccchhhhcCC
Q 037538 320 TSLEVLGLAQN-GFGGE-MPISIANLSTHLRILTMGYNL--MHGN-IPVGIENLVNLSLLGLEGNN-LSGSVPEVIGRLN 393 (461)
Q Consensus 320 ~~L~~L~L~~n-~~~~~-~~~~~~~~~~~L~~L~l~~n~--l~~~-~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~ 393 (461)
++|++|+++++ .+++. +...+....++|+.|+++++. ++.. +.....++++|++|++++|. +++.....+.+++
T Consensus 121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~ 200 (284)
T d2astb2 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200 (284)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence 77777777764 33322 222333444467777776642 3321 22233456777777777653 5555566666777
Q ss_pred CCCeeccccc-cCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcccCC
Q 037538 394 KLEGLELNAN-KFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNGTIP 458 (461)
Q Consensus 394 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ip 458 (461)
+|++|++++| .+++.....++++++|+.|++++|.-.+.++.....+++|+ +..+++++..|
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~ 263 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIAR 263 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCC
Confidence 7777777774 45655556666777777777776622222222223344443 35555554433
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-16 Score=143.17 Aligned_cols=222 Identities=18% Similarity=0.125 Sum_probs=117.1
Q ss_pred CEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCC
Q 037538 153 RSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232 (461)
Q Consensus 153 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 232 (461)
++++.++..++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+...++.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~---------------- 71 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---------------- 71 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS----------------
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec----------------
Confidence 45666665555 4554432 3566677776666643333456666666666666665533321
Q ss_pred CchhhccCCCCCcEEEccCccCccccChhhcCCCCCCEEEccc-ccccccCCccCCCCCCCCEEEcccCcCcccCCCCch
Q 037538 233 FISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASNLQVLDFAE-NGLTGTIPENFGSLKDLVRLNFDQNELGSREIGDLN 311 (461)
Q Consensus 233 ~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 311 (461)
..+..+++++++++.. |.+....+..|.++++|+.+++++|++.....
T Consensus 72 ---------------------------~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~---- 120 (242)
T d1xwdc1 72 ---------------------------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD---- 120 (242)
T ss_dssp ---------------------------SSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC----
T ss_pred ---------------------------cccccccccccccccccccccccccccccccccccccccchhhhccccc----
Confidence 1233334444444332 23333334444444455555554444432211
Q ss_pred hhhhhcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCee-ecccCcCccccchhhh
Q 037538 312 FLKFLANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLL-GLEGNNLSGSVPEVIG 390 (461)
Q Consensus 312 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-~Ls~n~l~~~~~~~l~ 390 (461)
...+...+.+..+...++.+....+..+..++..++.+++.+|+++...+.. ...++++.+ ++++|+++...+..|.
T Consensus 121 -~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~ 198 (242)
T d1xwdc1 121 -VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFH 198 (242)
T ss_dssp -CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTT
T ss_pred -ccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhccccccccccccccHHHhc
Confidence 1112223334444444444442223333334446777777777777544433 334444444 4566777743344577
Q ss_pred cCCCCCeeccccccCcccCChhhhcCccCCeeeccc
Q 037538 391 RLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEE 426 (461)
Q Consensus 391 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 426 (461)
++++|++|++++|+++...+..|.+++.|+.+++.+
T Consensus 199 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred CCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 788888888888888754455677777777776643
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=2.5e-16 Score=137.53 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=47.6
Q ss_pred CCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEE
Q 037538 125 LQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLL 204 (461)
Q Consensus 125 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (461)
+.+|++|++++|.+++ ++ .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence 3445555555555442 22 244455555555555555432 2 23455555555555555542 22 344555555555
Q ss_pred CccCCCcccCChhhhcCCCCcEEecCCCC
Q 037538 205 LARNNLHGSIPNELGQLSALGFFTLYENF 233 (461)
Q Consensus 205 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 233 (461)
+++|.+.. + ..+..++.++.+++++|.
T Consensus 119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~ 145 (210)
T d1h6ta2 119 LEHNGISD-I-NGLVHLPQLESLYLGNNK 145 (210)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSC
T ss_pred cccccccc-c-cccccccccccccccccc
Confidence 55555432 1 234444444444444443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=5e-17 Score=139.94 Aligned_cols=135 Identities=23% Similarity=0.343 Sum_probs=111.3
Q ss_pred CCcceeeEEecCCCCcEEEEEcCCCCcccccCccccCCCCCCEEecCCCCCcccC-chhccCCCCCCEEeCCCCCCCCCC
Q 037538 64 HFCNWVGVTCSPSNGRVTVLKLESKQLVGSIPASIGNLTNLTGINLFQNRFHGQI-PEEIGRLQKLQDLNLTYNYLSGKI 142 (461)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (461)
+.|.|..|.|. +++++ .+|+.+. +++++|+|++|.|++.+ +..|..+++|++|++++|.+.+..
T Consensus 6 C~C~~~~v~Cs------------~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~ 70 (192)
T d1w8aa_ 6 CHCEGTTVDCT------------GRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70 (192)
T ss_dssp SEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred CEEcCCEEEEe------------CCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc
Confidence 34666666664 44555 5666553 78999999999997644 566788999999999999999888
Q ss_pred CcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCCccc
Q 037538 143 PTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGS 213 (461)
Q Consensus 143 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 213 (461)
+..+..+++|++|++++|++.+..+..|.++++|++|+|++|.+++..+..|..+++|+++++++|.+...
T Consensus 71 ~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 88899999999999999999987788899999999999999999977777888999999999999988743
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=7.1e-16 Score=133.41 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEE
Q 037538 125 LQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLL 204 (461)
Q Consensus 125 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (461)
+.++++|++++|.+. .+ ..+..+++|++|++++|++++.. .++++++|++|++++|.+.. ++ .+.+++.|++++
T Consensus 39 l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccccc
Confidence 445555555555544 22 23445555555555555554321 14555555555555555442 22 244555555555
Q ss_pred CccCCCc
Q 037538 205 LARNNLH 211 (461)
Q Consensus 205 l~~n~~~ 211 (461)
+++|...
T Consensus 113 l~~~~~~ 119 (199)
T d2omxa2 113 LFNNQIT 119 (199)
T ss_dssp CCSSCCC
T ss_pred ccccccc
Confidence 5555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=8e-16 Score=133.09 Aligned_cols=124 Identities=24% Similarity=0.309 Sum_probs=75.2
Q ss_pred cCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcE
Q 037538 99 GNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEI 178 (461)
Q Consensus 99 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 178 (461)
..++++++|+++++.+. .+. .+..+++|++|++++|++++ ++ .++++++|++|++++|.+.. ++ .+.++++|+.
T Consensus 37 ~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~ 110 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG 110 (199)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred HHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-cc-cccCCccccccccccccccc-cc-cccccccccc
Confidence 34566777777777665 332 36667777777777777763 22 26677777777777776653 22 3667777777
Q ss_pred EEccCCCCcccCCccCCCCCCCCEEECccCCCcccCChhhhcCCCCcEEecCCC
Q 037538 179 IRLGTSNLTGNIPAWVGNFSSLQVLLLARNNLHGSIPNELGQLSALGFFTLYEN 232 (461)
Q Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 232 (461)
|+++++.... ...+..+++|+.+++++|++.. + ..+..+++++.|++.+|
T Consensus 111 L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n 160 (199)
T d2omxa2 111 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSN 160 (199)
T ss_dssp EECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSS
T ss_pred cccccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccc
Confidence 7777776653 2335667777777777776652 2 23444444444444333
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=2.8e-16 Score=135.21 Aligned_cols=128 Identities=25% Similarity=0.305 Sum_probs=73.3
Q ss_pred EEEccCCcCccccchHHHhccccccEEEccCCcCcccC-chhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 324 VLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNI-PVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 324 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+++.++++++ .+|..+ ++++++|++++|.+++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|+|++
T Consensus 12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 4555555554 444332 235566666666655422 33445566666666666666655555566666666666666
Q ss_pred ccCcccCChhhhcCccCCeeecccccccccCCccCCCCCCCCEEEccCCCCcc
Q 037538 403 NKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPPSLGNCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 455 (461)
|+++...+++|.++++|+.|+|++|+|++..|..|..+++|+++++++|++..
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 66665555556666666666666666665555556666666666666666543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.4e-16 Score=144.33 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=29.6
Q ss_pred cCCCCCCEEEcccc-cccccCCccCCCCCCCCEEEcccC-cCcccCCCCchhhhhhcCCCCCCEEEccCC
Q 037538 263 SNASNLQVLDFAEN-GLTGTIPENFGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCTSLEVLGLAQN 330 (461)
Q Consensus 263 ~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 330 (461)
..+++|++|++++| .+++.....+..+++|++|++++| .+++ .....+.++++|+.|+++++
T Consensus 172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~------~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------ETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG------GGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh------HHHHHHhcCCCCCEEeeeCC
Confidence 34555666666554 344444444555555555555553 3333 22223344455555555444
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.60 E-value=8.6e-16 Score=144.85 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=146.2
Q ss_pred ccCCCCCCCCEEECccCCCcccCC----hhhhcCCCCcEEecCCCCchhhccCCCCCcEEEccCccCccccChhhcCCCC
Q 037538 192 AWVGNFSSLQVLLLARNNLHGSIP----NELGQLSALGFFTLYENFISDVGLTLPNLKIFAGGVNYFTGSIPVSLSNASN 267 (461)
Q Consensus 192 ~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 267 (461)
..+.+..++++|++++|.+..... ..+...++|+.++++++......... ......+...+..+++
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~----------~~~~~~l~~~l~~~~~ 94 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI----------PEALRLLLQALLKCPK 94 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS----------HHHHHHHHHHHTTCTT
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccccc----------chHHHHHHHHHhhCCC
Confidence 344456677777777776653222 23344455555555544321110000 0000012233455677
Q ss_pred CCEEEccccccccc----CCccCCCCCCCCEEEcccCcCcccCCCCc-------hhhhhhcCCCCCCEEEccCCcCcccc
Q 037538 268 LQVLDFAENGLTGT----IPENFGSLKDLVRLNFDQNELGSREIGDL-------NFLKFLANCTSLEVLGLAQNGFGGEM 336 (461)
Q Consensus 268 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------~~~~~l~~~~~L~~L~L~~n~~~~~~ 336 (461)
|++|++++|.++.. +...+...++|++|++++|.++......+ .........+.|+.+++++|.++...
T Consensus 95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~ 174 (344)
T d2ca6a1 95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 174 (344)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccc
Confidence 77777777776543 22234456777778777776653211000 00111235677888888887776332
Q ss_pred c----hHHHhccccccEEEccCCcCccc-----CchhhhcCCCCCeeecccCcCccc----cchhhhcCCCCCeeccccc
Q 037538 337 P----ISIANLSTHLRILTMGYNLMHGN-----IPVGIENLVNLSLLGLEGNNLSGS----VPEVIGRLNKLEGLELNAN 403 (461)
Q Consensus 337 ~----~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n 403 (461)
. ..+.... .++++++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++|++++|
T Consensus 175 ~~~l~~~l~~~~-~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n 253 (344)
T d2ca6a1 175 MKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253 (344)
T ss_dssp HHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred cccccchhhhhh-hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence 2 2233333 788888888877532 223456678888888888887643 3455667888888888888
Q ss_pred cCcccCCh----hhhc--CccCCeeeccccccccc----CCccCC-CCCCCCEEEccCCCCcc
Q 037538 404 KFSGFMPS----SLGN--LTVLSRLLMEENRFEGS----IPPSLG-NCKKLQVLNLSSNNLNG 455 (461)
Q Consensus 404 ~l~~~~~~----~~~~--l~~L~~L~l~~n~l~~~----~p~~l~-~l~~L~~L~ls~N~l~~ 455 (461)
.+++.... .+.. .+.|+.|++++|+|+.. +...+. +++.|+.|++++|++..
T Consensus 254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 88754333 3333 35788888888888653 233332 56788889998888864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=6.4e-16 Score=145.75 Aligned_cols=138 Identities=21% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCcccc-----chHHHhccccccEEEccCCcCccc----
Q 037538 290 KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGEM-----PISIANLSTHLRILTMGYNLMHGN---- 360 (461)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~---- 360 (461)
+.|+.+.+++|.++..... .+...+..++.+++|++++|.++... ...+... ++|+.|++++|.++..
T Consensus 158 ~~L~~l~l~~n~i~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~ 234 (344)
T d2ca6a1 158 PPLRSIICGRNRLENGSMK--EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSA 234 (344)
T ss_dssp CCCCEEECCSSCCTGGGHH--HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHH
T ss_pred cccceeecccccccccccc--cccchhhhhhhhcccccccccccccccccchhhhhcch-hhhccccccccccccccccc
Confidence 4445555555444332111 23333444555555555555544221 1112222 2555555555554422
Q ss_pred CchhhhcCCCCCeeecccCcCccccchh----hhc--CCCCCeeccccccCccc----CChhhh-cCccCCeeecccccc
Q 037538 361 IPVGIENLVNLSLLGLEGNNLSGSVPEV----IGR--LNKLEGLELNANKFSGF----MPSSLG-NLTVLSRLLMEENRF 429 (461)
Q Consensus 361 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~--~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l 429 (461)
+...+..+++|++|+|++|.+++..... +.. .+.|+.|++++|+++.. +...+. +++.|+.|++++|++
T Consensus 235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 2233455566666666666665432222 222 24566666666666532 222332 355666666666666
Q ss_pred c
Q 037538 430 E 430 (461)
Q Consensus 430 ~ 430 (461)
.
T Consensus 315 ~ 315 (344)
T d2ca6a1 315 S 315 (344)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-14 Score=120.06 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=95.3
Q ss_pred ccCCCCCCEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCc
Q 037538 98 IGNLTNLTGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLE 177 (461)
Q Consensus 98 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 177 (461)
+.+..++++|+|++|+|+ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 456778888888888887 56666677888888899888887 443 578888888899988888765555566788889
Q ss_pred EEEccCCCCcccC-CccCCCCCCCCEEECccCCCcccC---ChhhhcCCCCcEEe
Q 037538 178 IIRLGTSNLTGNI-PAWVGNFSSLQVLLLARNNLHGSI---PNELGQLSALGFFT 228 (461)
Q Consensus 178 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~ 228 (461)
+|++++|++...- ...+..+++|+++++++|.++... +..+..+++|++|+
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 9999888887421 135677888888888888876322 12466777777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=6.8e-14 Score=110.48 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=56.8
Q ss_pred CEEecCCCCCcccCchhccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCC
Q 037538 105 TGINLFQNRFHGQIPEEIGRLQKLQDLNLTYNYLSGKIPTNLSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTS 184 (461)
Q Consensus 105 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (461)
|.|++++|+++ .++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++. +| .+.++++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 34556666655 333 2555566666666666655 455555566666666666665553 22 3556666666666666
Q ss_pred CCcccC-CccCCCCCCCCEEECccCCCc
Q 037538 185 NLTGNI-PAWVGNFSSLQVLLLARNNLH 211 (461)
Q Consensus 185 ~l~~~~-~~~l~~l~~L~~L~l~~n~~~ 211 (461)
+++... ...+..+++|+++++++|.+.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 655321 134555666666666666654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=7.3e-14 Score=110.29 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=66.4
Q ss_pred CEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecccc
Q 037538 323 EVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNA 402 (461)
Q Consensus 323 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 402 (461)
+.|++++|+++ .++ .+..+. +|++|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~-~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCC-CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence 45777777776 343 255554 6777777777776 355566677777777777777763 33 366677777777777
Q ss_pred ccCcccC-ChhhhcCccCCeeecccccccc
Q 037538 403 NKFSGFM-PSSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 403 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 431 (461)
|++++.. ...+..+++|+.|++++|++++
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 7776332 2456667777777777777653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3e-14 Score=118.30 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=67.5
Q ss_pred CCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCe
Q 037538 318 NCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEG 397 (461)
Q Consensus 318 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 397 (461)
++.++++|++++|+++ .++..+..+. +|+.|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|+.
T Consensus 16 n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence 3445555555555554 2333222332 55566666665553 22 3555666666666666666433334455666666
Q ss_pred eccccccCcccC-ChhhhcCccCCeeecccccccccCCc----cCCCCCCCCEEE
Q 037538 398 LELNANKFSGFM-PSSLGNLTVLSRLLMEENRFEGSIPP----SLGNCKKLQVLN 447 (461)
Q Consensus 398 L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~ 447 (461)
|++++|+++... ...+..+++|+.|++++|+++. .|. .+..+++|+.||
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 666666665321 1345666666666666666653 232 345566666665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.27 E-value=2.3e-13 Score=116.88 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=51.6
Q ss_pred hcCCCCCCEEEccCCcCccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCC
Q 037538 316 LANCTSLEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKL 395 (461)
Q Consensus 316 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 395 (461)
+..+++|+.|++++|+++ .++ .+..+. +|++|++++|.++ .+|.....+++|+.|++++|+++. + ..+..+++|
T Consensus 44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L 117 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNL 117 (198)
T ss_dssp HHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHS
T ss_pred HhcccccceeECcccCCC-Ccc-cccCCc-cccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccc
Confidence 344444455555544444 222 233333 4555555555544 233333333455555555555542 2 224455555
Q ss_pred CeeccccccCcccCC-hhhhcCccCCeeecccccccc
Q 037538 396 EGLELNANKFSGFMP-SSLGNLTVLSRLLMEENRFEG 431 (461)
Q Consensus 396 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 431 (461)
+.|++++|+++.... ..+..+++|+.|++++|+++.
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccchhccccccccccCCCccceeecCCCcccc
Confidence 555555555542211 245555555555555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.1e-11 Score=100.02 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCEEEccCCcCccccchHHHhccccccEEEccCCc-CcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeecc
Q 037538 322 LEVLGLAQNGFGGEMPISIANLSTHLRILTMGYNL-MHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLEL 400 (461)
Q Consensus 322 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 400 (461)
.+.++.+++++. ..|..+..++ ++++|++.+|+ ++...+.+|.++++|+.|+|++|+++...+..|..+++|++|+|
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 444555555444 3333333333 45555554332 44333344444555555555555554433444455555555555
Q ss_pred ccccCcccCChhhhcCccCCeeecccccc
Q 037538 401 NANKFSGFMPSSLGNLTVLSRLLMEENRF 429 (461)
Q Consensus 401 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 429 (461)
++|+++...+..+ ....|+.|+|++|++
T Consensus 88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 88 SFNALESLSWKTV-QGLSLQELVLSGNPL 115 (156)
T ss_dssp CSSCCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred cCCCCcccChhhh-ccccccccccCCCcc
Confidence 5555542222222 222355555555544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=8.2e-13 Score=113.36 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=103.9
Q ss_pred CCCEEEccCCc-CccccchHHHhccccccEEEccCCcCcccCchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeec
Q 037538 321 SLEVLGLAQNG-FGGEMPISIANLSTHLRILTMGYNLMHGNIPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLE 399 (461)
Q Consensus 321 ~L~~L~L~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 399 (461)
..+.+++++.. -...++..+..+. +|++|++++|.++. ++ .+..+++|+.|++++|.++ .++.....+++|+.|+
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~-~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~ 99 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTT-TCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred ccceeeeecccCchhhhhhHHhccc-ccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence 34555555431 1125667788887 99999999999984 54 5889999999999999998 5666666678999999
Q ss_pred cccccCcccCChhhhcCccCCeeecccccccccCC-ccCCCCCCCCEEEccCCCCccc
Q 037538 400 LNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIP-PSLGNCKKLQVLNLSSNNLNGT 456 (461)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~ 456 (461)
+++|+++.. +.+..+++|+.|++++|++++... ..+..+++|+.|++++|++...
T Consensus 100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 999999843 468889999999999999985322 4688999999999999998643
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.1e-10 Score=95.54 Aligned_cols=64 Identities=25% Similarity=0.204 Sum_probs=27.7
Q ss_pred CCCCCCCCEEEccCCcCCCcCchhhcCCCCCcEEEccCCCCcccCCccCCCCCCCCEEECccCCC
Q 037538 146 LSHCTELRSFEASANDFIGQIPDQLISLTKLEIIRLGTSNLTGNIPAWVGNFSSLQVLLLARNNL 210 (461)
Q Consensus 146 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 210 (461)
|.++++|+.|++++|+++...+.+|.++++|++|+|++|+++ .+|.......+|++|++++|.+
T Consensus 52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred hccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence 444444444444444444333344444444444444444444 2333222223455555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.8e-08 Score=82.76 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=54.5
Q ss_pred hhhhcCCCCCeeecccCcCccc--cchhhhcCCCCCeeccccccCcccCChhhhcCccCCeeecccccccccCCc-----
Q 037538 363 VGIENLVNLSLLGLEGNNLSGS--VPEVIGRLNKLEGLELNANKFSGFMPSSLGNLTVLSRLLMEENRFEGSIPP----- 435 (461)
Q Consensus 363 ~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~----- 435 (461)
.....+++|++|+|++|+++.. ++..+..+++|+.|++++|+++..-+-.+.....|+.+++++|++++....
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~ 138 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence 3445677777777777777643 234566677788888888877743332333445677788888877654432
Q ss_pred --cCCCCCCCCEEE
Q 037538 436 --SLGNCKKLQVLN 447 (461)
Q Consensus 436 --~l~~l~~L~~L~ 447 (461)
.+..+|+|+.||
T Consensus 139 ~~i~~~~P~L~~LD 152 (162)
T d1koha1 139 SAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHTTSTTCCEET
T ss_pred HHHHHHCCCCCEEC
Confidence 245677777775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1e-07 Score=78.05 Aligned_cols=78 Identities=26% Similarity=0.202 Sum_probs=53.1
Q ss_pred cccEEEccCCcCccc--CchhhhcCCCCCeeecccCcCccccchhhhcCCCCCeeccccccCcccCCh-------hhhcC
Q 037538 346 HLRILTMGYNLMHGN--IPVGIENLVNLSLLGLEGNNLSGSVPEVIGRLNKLEGLELNANKFSGFMPS-------SLGNL 416 (461)
Q Consensus 346 ~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-------~~~~l 416 (461)
+|++|++++|.++.. ++..+..+++|+.|++++|.+....+........|+.|++++|++.....+ .+..+
T Consensus 66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~ 145 (162)
T d1koha1 66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145 (162)
T ss_dssp TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence 666666666666542 234566788888888888888854333444556788888888888755442 35668
Q ss_pred ccCCeee
Q 037538 417 TVLSRLL 423 (461)
Q Consensus 417 ~~L~~L~ 423 (461)
|+|+.||
T Consensus 146 P~L~~LD 152 (162)
T d1koha1 146 PKLLRLD 152 (162)
T ss_dssp TTCCEET
T ss_pred CCCCEEC
Confidence 8888875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.04 E-value=2.5e-06 Score=69.87 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=9.0
Q ss_pred hhcCCCCCCEEEccCCcCc
Q 037538 315 FLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 315 ~l~~~~~L~~L~L~~n~~~ 333 (461)
++...+.|+.|++++|.++
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAIS 57 (167)
T ss_dssp HHTTCSCCCEEECTTSCCB
T ss_pred HHhhCCccceeeccccccc
Confidence 3444444555555554443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.89 E-value=5.4e-06 Score=67.75 Aligned_cols=69 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCCCCEEEcccc-ccccc----CCccCCCCCCCCEEEcccCcCcccCCCCchhhhhhcCCCCCCEEEccCCcCccc
Q 037538 265 ASNLQVLDFAEN-GLTGT----IPENFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAQNGFGGE 335 (461)
Q Consensus 265 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 335 (461)
.++|++|+++++ .++.. +...+...++|++|++++|.++..... .+...+...+.|++|++++|.+++.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~--~la~~L~~n~~L~~L~L~~n~i~~~ 87 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTPE 87 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH--HHhhhhhhcccccceeeehhhcchH
Confidence 456666666653 34322 222345556677777777766543222 3344555667777777777766643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.71 E-value=1.8e-05 Score=64.38 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=12.2
Q ss_pred hhhhhcCCCCCCEEEccCCcCc
Q 037538 312 FLKFLANCTSLEVLGLAQNGFG 333 (461)
Q Consensus 312 ~~~~l~~~~~L~~L~L~~n~~~ 333 (461)
+..++..+++|++|++++|.++
T Consensus 38 l~~al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 38 CAEALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp HHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHhcCCccCeeeccCCccc
Confidence 3344455566666666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.50 E-value=3.2e-05 Score=62.90 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=66.3
Q ss_pred hhhcCCCCCCEEEccC-CcCccccch----HHHhccccccEEEccCCcCccc----CchhhhcCCCCCeeecccCcCccc
Q 037538 314 KFLANCTSLEVLGLAQ-NGFGGEMPI----SIANLSTHLRILTMGYNLMHGN----IPVGIENLVNLSLLGLEGNNLSGS 384 (461)
Q Consensus 314 ~~l~~~~~L~~L~L~~-n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~ 384 (461)
....+.++|++|++++ +.++...-. .+...+ +|++|++++|.++.. +...+...++++.+++++|.+...
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~ 89 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 89 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence 3445678888888887 456533222 222333 678888888876543 222345567777777777777543
Q ss_pred ----cchhhhcCCCCCeec--cccccCcc----cCChhhhcCccCCeeeccccc
Q 037538 385 ----VPEVIGRLNKLEGLE--LNANKFSG----FMPSSLGNLTVLSRLLMEENR 428 (461)
Q Consensus 385 ----~~~~l~~~~~L~~L~--L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~ 428 (461)
+...+...++|+.++ +++|.+.. .+.+.+..++.|+.|+++.+.
T Consensus 90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 224455566676533 34555543 233445566667777666554
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