Citrus Sinensis ID: 037539
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | 2.2.26 [Sep-21-2011] | |||||||
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.762 | 0.485 | 0.315 | 6e-44 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.631 | 0.376 | 0.330 | 5e-43 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.654 | 0.362 | 0.333 | 6e-43 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.635 | 0.331 | 0.340 | 1e-42 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.651 | 0.408 | 0.327 | 4e-42 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.575 | 0.313 | 0.353 | 2e-40 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.644 | 0.353 | 0.332 | 3e-40 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.774 | 0.385 | 0.316 | 4e-40 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.683 | 0.501 | 0.291 | 6e-40 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.601 | 0.373 | 0.325 | 1e-39 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 181/574 (31%), Positives = 257/574 (44%), Gaps = 100/574 (17%)
Query: 54 FFLNTVSVTKSSDWFQVVAKLHSLKSL--VLFSCALPPVNPSFIWH----FNLSTSIETL 107
F L+ V+ S + ++ S K + VL+ P + +W N++ ++ L
Sbjct: 14 FCLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVAL 73
Query: 108 DLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYN 167
+LSD NL + P + +LK SL S+ L + L G IP G+ SL+ L LS+N
Sbjct: 74 NLSDLNL-DGEISPAIGDLK------SLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFN 126
Query: 168 KLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTI 226
+LSG I L LE L L+ N GPIP L +L+ L N L+G I
Sbjct: 127 ELSGDIPFSISKLK------QLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEI 180
Query: 227 DKSLSQLSKLESLSLDGNSLR---AISLCILTS-------PIGISDSIPDWFWDLSNKLS 276
+ + L+ L L GN+L + LC LT ++ SIP+ + +
Sbjct: 181 PRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCT-AFQ 239
Query: 277 YLNLSNNHFRGKLPD----LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
L+LS N G++P L + L N LSG +P L +L+L+ N LSG I
Sbjct: 240 VLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSI 299
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE------ 386
P +G L L LH+N+LTG +P L N S+L L+L N + G IP +G+
Sbjct: 300 PPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFD 359
Query: 387 -----------------SLQNLIVLSLKSNKFHGNIPYQFE------------NEYK--- 414
S NL L++ NKF G IP F+ N K
Sbjct: 360 LNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPI 419
Query: 415 ----STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF 470
S +G + LDLS+NK++G IP + DL L+ +NLSRNH+TG + G L S+
Sbjct: 420 PVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIME 479
Query: 471 LDLSRNLFSGSIPCSLSQLS-----------------------GLGVLDLSYNNLSGKIP 507
+DLS N SG IP L+QL L VL++S+NNL G IP
Sbjct: 480 IDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIP 539
Query: 508 SGTQLQSFNASVYAGNLELCGLPLANMCLDEEST 541
F+ + GN LCG L + C D T
Sbjct: 540 KNNNFSRFSPDSFIGNPGLCGSWLNSPCHDSRRT 573
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Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 143/433 (33%), Positives = 211/433 (48%), Gaps = 40/433 (9%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
T+++TL L N L + + L N+K +L L+L ++L G IP G M S+
Sbjct: 286 TALDTLSLHTNKL-TGPIPSTLGNIK------TLAVLHLYLNQLNGSIPPELGEMESMID 338
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVN 220
L +S NKL+G SFG + +LE L+LR N +GPIP + + L LD N
Sbjct: 339 LEISENKLTGPVPD-----SFGKLT-ALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTN 392
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNL 280
G + ++ + KLE+L+LD N +P D + L +
Sbjct: 393 NFTGFLPDTICRGGKLENLTLDDNHFEG--------------PVPKSLRDCKS-LIRVRF 437
Query: 281 SNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
N F G + + +L F DLS+N G L W +L L+NN ++G IP
Sbjct: 438 KGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPE 497
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395
+ + + L+L +NR+TG+LP + N +++ L L N + G+IP+ I L NL L
Sbjct: 498 IWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGI-RLLTNLEYLD 556
Query: 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455
L SN+F IP N L + ++LS N LD IPE + L L L+LS N L
Sbjct: 557 LSSNRFSSEIPPTLNN-----LPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLD 611
Query: 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSF 515
G I+ + L +L+ LDLS N SG IP S + L +D+S+NNL G IP ++
Sbjct: 612 GEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNA 671
Query: 516 NASVYAGNLELCG 528
+ GN +LCG
Sbjct: 672 PPDAFEGNKDLCG 684
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 217/468 (46%), Gaps = 61/468 (13%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
TS+ETL L N+L V P +M SLK LYL ++L G IPK G + + +
Sbjct: 277 TSLETLALYGNSL----VGPIP---SEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVN 220
+ S N LSG+ + +S L LYL N TG IP L +L L +N
Sbjct: 330 IDFSENLLSGEIPVELSKIS------ELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSIN 383
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAI--SLCILTSPIGISD--------SIPDWFWD 270
L G I L+ + L L NSL + L SP+ + D IP +
Sbjct: 384 SLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQ 443
Query: 271 LSNKLSYLNLSNNHFRGKLPDLSLRFD-----------------------------DLSS 301
SN L LNL +N G +P LR +L
Sbjct: 444 QSN-LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQ 502
Query: 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR 361
N SG LP +L L+LA N+ S +P+ + L+N+ T N+ +N LTG +PS +
Sbjct: 503 NRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIA 562
Query: 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVR 421
N L+ LDL +N+ G +P +G SL L +L L N+F GNIP+ N L +
Sbjct: 563 NCKMLQRLDLSRNSFIGSLPPELG-SLHQLEILRLSENRFSGNIPFTIGN-----LTHLT 616
Query: 422 CLDLSSNKLDGAIPEEIMDLVGL-IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG 480
L + N G+IP ++ L L IA+NLS N +G I P+IG L L +L L+ N SG
Sbjct: 617 ELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSG 676
Query: 481 SIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCG 528
IP + LS L + SYNNL+G++P Q+ + + GN LCG
Sbjct: 677 EIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 220/449 (48%), Gaps = 54/449 (12%)
Query: 92 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151
P +W L LDL NN + P K+ +L S + LEG +P
Sbjct: 418 PEDLWKLPLMA----LDLDSNNF--TGEIP-----KSLWKSTNLMEFTASYNRLEGYLPA 466
Query: 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP-HLGGFS 210
GN SLK+L LS N+L+G+ + I L+ SL L L N F G IP LG +
Sbjct: 467 EIGNAASLKRLVLSDNQLTGEIPREIGKLT------SLSVLNLNANMFQGKIPVELGDCT 520
Query: 211 SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWD 270
SL L N L G I ++ L++L+ L L N+L S SIP
Sbjct: 521 SLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNL--------------SGSIP----- 561
Query: 271 LSNKLSYLNLSNNHFRGKLPDLSL----RFDDLSSNLLSGGLPDCWLHFDRLFILNLANN 326
S +Y + + ++PDLS DLS N LSG +P+ L ++L+NN
Sbjct: 562 -SKPSAYFH------QIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNN 614
Query: 327 RLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386
LSG+IP S+ L N+ L+L N LTG +P + N +L+ L+L N + G IP G
Sbjct: 615 HLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG- 673
Query: 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446
L +L+ L+L NK G +P N L + +DLS N L G + E+ + L+
Sbjct: 674 LLGSLVKLNLTKNKLDGPVPASLGN-----LKELTHMDLSFNNLSGELSSELSTMEKLVG 728
Query: 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506
L + +N TG I ++G LT L++LD+S NL SG IP + L L L+L+ NNL G++
Sbjct: 729 LYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEV 788
Query: 507 PSGTQLQSFNASVYAGNLELCGLPLANMC 535
PS Q + ++ +GN ELCG + + C
Sbjct: 789 PSDGVCQDPSKALLSGNKELCGRVVGSDC 817
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Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 159/486 (32%), Positives = 228/486 (46%), Gaps = 81/486 (16%)
Query: 102 TSIETLDLS----DNNLPSSSVYPWLLNLK---------------AFQHMVSLKSLYLSD 142
T +E LDL D +P S Y L+LK ++ +L LYL
Sbjct: 174 TRLEHLDLGGNYFDGEIPRS--YGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGY 231
Query: 143 -SELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG 201
++ GGIP FG + +L L L+ L G + NL +LE L+L+ N+ TG
Sbjct: 232 YNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLK------NLEVLFLQTNELTG 285
Query: 202 PIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260
+P LG +SL+ L N L G I LS L KL+ +L N L
Sbjct: 286 SVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHG------------ 333
Query: 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLP-----DLSLRFDDLSSNLLSGGLPDCWLHF 315
IP++ +L + L L L +N+F GK+P + +L DLS+N L+G +P+
Sbjct: 334 --EIPEFVSELPD-LQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFG 390
Query: 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375
RL IL L NN L G +P+ +G +W L N LT KLP L L +L+L+ N
Sbjct: 391 RRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNF 450
Query: 376 IFGEIPTWIGESLQ--NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433
+ GEIP + Q +L ++L +N+ G IP N L ++ L L +N+L G
Sbjct: 451 LTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRN-----LRSLQILLLGANRLSGQ 505
Query: 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493
IP EI L L+ +++SRN+ +G P+ G+ SL +LDLS N SG IP +SQ+ L
Sbjct: 506 IPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILN 565
Query: 494 VL------------------------DLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGL 529
L D S+NN SG +P+ Q FN + + GN LCG
Sbjct: 566 YLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNPFLCGF 625
Query: 530 PLANMC 535
+N C
Sbjct: 626 S-SNPC 630
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Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 197/402 (49%), Gaps = 44/402 (10%)
Query: 113 NLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ 172
NLPSS + L++L + + + G IP GN L L L N LSG
Sbjct: 241 NLPSS-----------LGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGS 289
Query: 173 YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLS 231
+ I L+ LE L+L N G IP +G S+L+ L +N L+G+I S+
Sbjct: 290 IPREIGQLT------KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIG 343
Query: 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD 291
+LS LE + N S SIP + S+ L L L N G +P
Sbjct: 344 RLSFLEEFMISDNKF--------------SGSIPTTISNCSS-LVQLQLDKNQISGLIPS 388
Query: 292 LSLRFDDLS-----SNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346
L+ SN L G +P L L+L+ N L+G IP + L N+ L
Sbjct: 389 ELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLL 448
Query: 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP 406
L +N L+G +P + N S L L L N I GEIP+ IG SL+ + L SN+ HG +P
Sbjct: 449 LISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIG-SLKKINFLDFSSNRLHGKVP 507
Query: 407 YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466
+ + ++ +DLS+N L+G++P + L GL L++S N +G I +G L
Sbjct: 508 DEI-----GSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562
Query: 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
SL+ L LS+NLFSGSIP SL SGL +LDL N LSG+IPS
Sbjct: 563 SLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPS 604
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 152/457 (33%), Positives = 220/457 (48%), Gaps = 56/457 (12%)
Query: 114 LPSSSVYPWLLN---LKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS 170
L S SVY +L+ K + L +L+L D++L G +PK G + +L+K+ L N L
Sbjct: 253 LQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLH 312
Query: 171 GQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKS 229
G + I + SL + L N F+G IP G S+L+ L N + G+I
Sbjct: 313 GPIPEEIG------FMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSI 366
Query: 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGI--------------SDSIPDWFWDLSNKL 275
LS +KL +D N + + + IG+ +IPD N L
Sbjct: 367 LSNCTKLVQFQIDANQISGL----IPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQN-L 421
Query: 276 SYLNLSNNHFRGKLPDLSLRFDDLS-----SNLLSGGLPDCWLHFDRLFILNLANNRLSG 330
L+LS N+ G LP + +L+ SN +SG +P + L L L NNR++G
Sbjct: 422 QALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITG 481
Query: 331 KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390
+IP +GFL N+ L+L N L+G +P + N QL++L+L N + G +P + SL
Sbjct: 482 EIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSL-SSLTK 540
Query: 391 LIVLSLKSNKFHGNIP----------------YQFENEYKSTLGL---VRCLDLSSNKLD 431
L VL + SN G IP F E S+LG ++ LDLSSN +
Sbjct: 541 LQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNIS 600
Query: 432 GAIPEEIMDLVGL-IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490
G IPEE+ D+ L IALNLS N L G I +I L L LD+S N+ SG + +LS L
Sbjct: 601 GTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLE 659
Query: 491 GLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527
L L++S+N SG +P + + GN LC
Sbjct: 660 NLVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGLC 696
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 179/565 (31%), Positives = 252/565 (44%), Gaps = 83/565 (14%)
Query: 71 VAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLS-DNNLPSSSVYPWLLNLKAF 129
++K SLK L L + +L P ++ +E DL NN ++ P + NL
Sbjct: 356 LSKCQSLKQLDLSNNSLAGSIPEALFEL-----VELTDLYLHNNTLEGTLSPSISNLTNL 410
Query: 130 QHMV------------------SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG 171
Q +V L+ L+L ++ G IP+ GN SLK + + N G
Sbjct: 411 QWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEG 470
Query: 172 QYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSL 230
+ I L L L+LR N+ G +P LG L L N L+G+I S
Sbjct: 471 EIPPSIGRLK------ELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSF 524
Query: 231 SQLSKLESLSLDGNSLRA------ISLCILTS-------------PI------------- 258
L LE L L NSL+ ISL LT P+
Sbjct: 525 GFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTN 584
Query: 259 -GISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP-------DLSLRFDDLSSNLLSGGLPD 310
G D IP + S L L L N GK+P +LSL D+SSN L+G +P
Sbjct: 585 NGFEDEIPLELGN-SQNLDRLRLGKNQLTGKIPWTLGKIRELSLL--DMSSNALTGTIPL 641
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370
+ +L ++L NN LSG IP +G L+ + L L +N+ LP+ L N ++L VL
Sbjct: 642 QLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLS 701
Query: 371 LEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL 430
L+ N++ G IP IG +L L VL+L N+F G++P + L + L LS N L
Sbjct: 702 LDGNSLNGSIPQEIG-NLGALNVLNLDKNQFSGSLP-----QAMGKLSKLYELRLSRNSL 755
Query: 431 DGAIPEEIMDLVGLI-ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL 489
G IP EI L L AL+LS N+ TG I IG L+ L+ LDLS N +G +P S+ +
Sbjct: 756 TGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815
Query: 490 SGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDD 549
LG L++S+NNL GK+ Q + A + GN LCG PL+ + G
Sbjct: 816 KSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQQGLSAR 873
Query: 550 SDTLEDEDDQFITLGFYVSSILSFF 574
S + +G + I FF
Sbjct: 874 SVVIISAISALTAIGLMILVIALFF 898
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 160/549 (29%), Positives = 238/549 (43%), Gaps = 124/549 (22%)
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYS---QVIQNLSFGCV--- 185
++ L+ + ++ L G IP F N+ L LS N + + + NL + V
Sbjct: 253 LIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYN 312
Query: 186 ------------VNSLEGLYLRWNDFTGPIPHLGGFSS--LEAWSLDVNCLNGTIDKSLS 231
+ SLE +YL+ N FTGPI SS L+ L N L+G I +S+S
Sbjct: 313 SFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESIS 372
Query: 232 QLSKLESLSLDGNSL---------RAISLCILT-SPIGISDSIPDWFWDLSNK------- 274
+L LE L + N+ + ++L L S + +P W L+
Sbjct: 373 RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSF 432
Query: 275 ------------LSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFD- 316
+ L+L++N F+G +P + SL F DLS+NL SG +P C +F
Sbjct: 433 SSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSG 492
Query: 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
+ LNL +N SG +PD + +L++ +N+L GK P L N L ++++E N I
Sbjct: 493 SIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKI 552
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNI---------------------------PYQF 409
P+W+ ESL +L VL+L+SNKF+G + PY F
Sbjct: 553 KDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYF 611
Query: 410 EN-----------------------EYKSTLGLV---------------RCLDLSSNKLD 431
N Y + +V R +D S NK++
Sbjct: 612 SNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKIN 671
Query: 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSG 491
G IPE + L L LNLS N T I + LT L+ LD+SRN SG IP L+ LS
Sbjct: 672 GNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSF 731
Query: 492 LGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDDSD 551
L ++ S+N L G +P GTQ Q S + N L G L ++C D + P + D
Sbjct: 732 LSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGAL-NPTSQLPED 788
Query: 552 TLEDEDDQF 560
E E++ F
Sbjct: 789 LSEAEENMF 797
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 206/443 (46%), Gaps = 69/443 (15%)
Query: 135 LKSLYLSDSELEGGIPKFFGNMCSLKKLRLSY-----NKLS---GQYSQVIQNLSFGC-- 184
L+ L +S +EL G IP GN+ +L++L + Y N L G S++++ + C
Sbjct: 192 LEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGL 251
Query: 185 ---------VVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234
+ L+ L+L+ N FTG I LG SSL++ L N G I S SQL
Sbjct: 252 TGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLK 311
Query: 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-- 292
L L+L N L +IP++ ++ +L L L N+F G +P
Sbjct: 312 NLTLLNLFRNKLYG--------------AIPEFIGEMP-ELEVLQLWENNFTGSIPQKLG 356
Query: 293 ---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHN 349
L DLSSN L+G LP +RL L N L G IPDS+G ++ + +
Sbjct: 357 ENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGE 416
Query: 350 NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF 409
N L G +P L +L ++L+ N + GE+P G +L +SL +N+ G++P
Sbjct: 417 NFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAI 476
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
N L V+ L L NK G+IP EI L L L+ S N +G I P+I L
Sbjct: 477 GN-----LSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLT 531
Query: 470 FLDLSRNLFSG------------------------SIPCSLSQLSGLGVLDLSYNNLSGK 505
F+DLSRN SG SIP +++ + L +D SYNNLSG
Sbjct: 532 FVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGL 591
Query: 506 IPSGTQLQSFNASVYAGNLELCG 528
+PS Q FN + + GN LCG
Sbjct: 592 VPSTGQFSYFNYTSFVGNSHLCG 614
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| 225462661 | 1485 | PREDICTED: LRR receptor-like serine/thre | 0.898 | 0.376 | 0.362 | 1e-102 | |
| 225466147 | 1024 | PREDICTED: LRR receptor-like serine/thre | 0.778 | 0.472 | 0.383 | 1e-102 | |
| 359490576 | 972 | PREDICTED: LRR receptor-like serine/thre | 0.908 | 0.581 | 0.344 | 1e-100 | |
| 147834202 | 1270 | hypothetical protein VITISV_011552 [Viti | 0.887 | 0.434 | 0.378 | 1e-100 | |
| 224105895 | 963 | predicted protein [Populus trichocarpa] | 0.951 | 0.614 | 0.352 | 2e-98 | |
| 359490560 | 1010 | PREDICTED: LRR receptor-like serine/thre | 0.810 | 0.499 | 0.377 | 3e-96 | |
| 147795695 | 1680 | hypothetical protein VITISV_022720 [Viti | 0.827 | 0.306 | 0.375 | 5e-95 | |
| 302143722 | 750 | unnamed protein product [Vitis vinifera] | 0.797 | 0.661 | 0.406 | 1e-94 | |
| 224125666 | 938 | predicted protein [Populus trichocarpa] | 0.890 | 0.590 | 0.369 | 3e-94 | |
| 147807651 | 971 | hypothetical protein VITISV_018647 [Viti | 0.909 | 0.582 | 0.337 | 2e-93 |
| >gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 290/799 (36%), Positives = 373/799 (46%), Gaps = 240/799 (30%)
Query: 59 VSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSF-IWHFNLSTSIETLDLSDNNLPSS 117
V+++K+ W Q V K+ +L L L + LPP++P+ I H N STS+ L+L +N+L +S
Sbjct: 168 VNLSKAIHWPQAVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDL-TS 226
Query: 118 SVYPWLLNLK-------------------AFQHMVSLKSLYLSDSELEGGIPK------- 151
S+YPWLLN AF +M +L L LS ++LEG IPK
Sbjct: 227 SIYPWLLNFSSCLVHLDLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLV 286
Query: 152 ---------------FFGNMCSLKKLRLSYNKLSGQYSQVIQNLS--------------- 181
FGNM +L L S N+L G+ + ++ L
Sbjct: 287 TLDLSWNHLHGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGL 346
Query: 182 -----FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQL--- 233
C N+LE L L N F G P L GFS L L+ N LNGT+ +S+ QL
Sbjct: 347 LEKDFLACSNNTLEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQL 406
Query: 234 ----------------------SKLESLSLDGNSL------------RAISL----CIL- 254
SKL L L NSL +AI + C L
Sbjct: 407 QVLSLRSNSLRGTVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLG 466
Query: 255 -----------------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP------- 290
S GI++ +P+WFW ++ LS+ N+SNNH G LP
Sbjct: 467 PHFPNWLRTQKHLSMLDISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLPNLTSHLS 526
Query: 291 -------------------------DLS---------------------LRFDDLSSNLL 304
DLS L DLS+N L
Sbjct: 527 YLGMDISSNCLEGSIPQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLSHLDLSNNRL 586
Query: 305 SGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFS 364
SG LP C + L +LNLANN SGKI +S+G ++ TL+L NN LTG LP L+N
Sbjct: 587 SGELPKCREQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCR 646
Query: 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN--------------KFH-------- 402
LR+LDL KN + G+IP WIG SL NLIV++L+SN K H
Sbjct: 647 DLRLLDLGKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNN 706
Query: 403 --GNIPYQFEN---------------------------------------EYKSTLGLVR 421
G IP N EY TLGLV+
Sbjct: 707 LSGTIPKCLNNLSGMAQNGSLVITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLGLVK 766
Query: 422 CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481
+D S+NKL G IP E+ DLV L++LNLSRN+L GPI IG+L SLD LDLSRN G
Sbjct: 767 SIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGG 826
Query: 482 IPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEEST 541
IP SLSQ++ L VLDLS N LSGKIPSGTQLQSFNAS Y GN LCG PL C ++E+
Sbjct: 827 IPISLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENR 886
Query: 542 PGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFLTGM 601
T ++ ED D + FY + +L F +GFWGV GTL+LN SW Y YF FL+ +
Sbjct: 887 EVSFTGLSNE--EDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFLSKI 944
Query: 602 KDWVSVISAVNISKLQRKF 620
KDW+ V + + +S L+ K
Sbjct: 945 KDWLYVTTTICMSDLELKL 963
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 257/670 (38%), Positives = 338/670 (50%), Gaps = 186/670 (27%)
Query: 131 HMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190
+MVSLK L LS++ L+G IPK N+C+L++L L N LSGQ + C ++LE
Sbjct: 361 NMVSLKKLSLSENHLQGEIPKSLSNLCNLQELELDRNNLSGQLAPDF----VACANDTLE 416
Query: 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESL----------- 239
L+L N F+G +P L GFSSL LD N LNGT+ +S+ QL+ L+SL
Sbjct: 417 TLFLSDNQFSGSVPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTI 476
Query: 240 --------------SLDGNSL------------RAISLCILTSPIG-------------- 259
+L NSL + +SL + + +G
Sbjct: 477 SEAHLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLS 536
Query: 260 --------ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFD-------------- 297
ISD +PDWFW++++ ++ L++SNN +G LP+LS F
Sbjct: 537 ELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFGSFSNIDMSSNCFEG 596
Query: 298 ------------DLSSNLLSG------------------------GLPDCWLHFDRLFIL 321
DLS+N LSG GLP+CW ++ L +L
Sbjct: 597 SIPQLPYDVQWLDLSNNKLSGSISLLCTVGTELLLLDLSNNSLSGGLPNCWAQWESLVVL 656
Query: 322 NLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIP 381
NL NNR SG+IP S G L +I TL+L NN LTG+LP +N + LR +DL KN + G+IP
Sbjct: 657 NLENNRFSGQIPISFGSLRSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIP 716
Query: 382 TWIGESLQNLIV------------------------LSLKSNKFHGNIP----------- 406
WIG SL NL V L L SN G +P
Sbjct: 717 EWIGGSLPNLTVLNLGSNRFSGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTK 776
Query: 407 ---------YQF--------------------------ENEYKSTLGLVRCLDLSSNKLD 431
Y F E EYKSTLGLV+ +D SSNKL
Sbjct: 777 KGSLVIVHNYSFADFSSKYSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLS 836
Query: 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSG 491
G IPEE++DLV L++LNLSRN+LT I +IG+L SL+ LDLS+N G IP SL ++S
Sbjct: 837 GEIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISD 896
Query: 492 LGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDDSD 551
L VLDLS NNLSGKIP GTQLQSFN Y GN LCGLPL C +++ T + D
Sbjct: 897 LSVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFEDKIKQDSPTHNIED 956
Query: 552 TLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFLTGMKDWVSVISAV 611
++ + + + FYVS L F VGFWGV GTL+LN SW Y YF FL +KDW+ VI A+
Sbjct: 957 KIQQDGND---MWFYVSVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAI 1013
Query: 612 NISKLQRKFR 621
N+++LQR +
Sbjct: 1014 NMARLQRSLQ 1023
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 277/804 (34%), Positives = 370/804 (46%), Gaps = 239/804 (29%)
Query: 56 LNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSF-IWHFNLSTSIETLDLSDNNL 114
L+ V+++K+ W Q + K+ SL L L LP + P+ I H N STS+ L L N L
Sbjct: 169 LSWVNLSKAIHWPQAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGL 228
Query: 115 PSSSVYPWLLNLK-------------------AFQHMVSLKSLYLSDSELEGGIPKFFGN 155
+SS+YPWL N AF +M +L L LS +EL G IP FGN
Sbjct: 229 -TSSIYPWLFNFSSSLVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGN 287
Query: 156 MCSLKKLRLSYNKLSGQYSQVIQNLS---------------------------------- 181
M +L L LS+NKL G N++
Sbjct: 288 MTTLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQN 347
Query: 182 ----------FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLS 231
C N+LE L L +N G P+L GFS L LD N L GT+ +S+
Sbjct: 348 NLTGLKEKDYLACPNNTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIG 407
Query: 232 QLSK-------------------------LESLSLDGNSL------------RAISLCIL 254
QL++ L L L NSL RA S+ +
Sbjct: 408 QLAQLQLLSIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLA 467
Query: 255 T----------------------SPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP-- 290
+ S GISD IP+WFW+L++ L++LN+SNNH G LP
Sbjct: 468 SCKLGPRFPNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNL 527
Query: 291 -----------------------------DLS---------------------LRFDDLS 300
DLS L DLS
Sbjct: 528 QARSYLGMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLS 587
Query: 301 SNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
+N LSG LP+CW + L +L+LANN SGKI +S+G L+ + TL+L NN TG LPS L
Sbjct: 588 NNRLSGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSSL 647
Query: 361 RNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN---------------- 404
+N LR++DL KN + G+I W+G SL +LIVL+L+SN+F+G+
Sbjct: 648 KNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDL 707
Query: 405 ------------------------------------IPYQF-----------ENEYKSTL 417
IPY + E EYK TL
Sbjct: 708 SSNNLSGKIPKCLKNLTAMAQKGSPVLSYETIYNLSIPYHYVDSTLVQWKGKEQEYKKTL 767
Query: 418 GLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477
++ +D S N+L G IP E+ DLV L++LNLSRN+L G I IG+L LD LDLS+N
Sbjct: 768 RFIKSIDFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQ 827
Query: 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLD 537
+G IP +LSQ++ L VLDLS N LSGKIP GTQLQSF+AS Y GN LCG PL C +
Sbjct: 828 LNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNPGLCGPPLLIRCPE 887
Query: 538 EESTPGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNF 597
+E T S ED D + FY + +L F +GFWGV GTL+ N SW Y YF
Sbjct: 888 DELGGVSFTSGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLFNSSWRYAYFQL 947
Query: 598 LTGMKDWVSVISAVNISKLQRKFR 621
L+ +KDW+ + + VN+++++R +
Sbjct: 948 LSKIKDWLYMTTIVNMNRIRRSLQ 971
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 276/730 (37%), Positives = 362/730 (49%), Gaps = 178/730 (24%)
Query: 59 VSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSF-IWHFNLSTSIETLDLSDNNLPSS 117
V+++K+ W Q V K+ +L L L + LPP++P+ I H N STS+ L+L +N+L +S
Sbjct: 166 VNLSKAIHWPQAVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDL-TS 224
Query: 118 SVYPWLLNLK-------------------AFQHMVSLKSLYLSDSELEGGIPK------- 151
S+YPWLLN AF +M +L L LS ++LEG IPK
Sbjct: 225 SIYPWLLNFSSCLVHLDLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLV 284
Query: 152 ---------------FFGNMCSLKKLRLSYNKLSGQYSQVIQNLS--------------- 181
FGNM +L L S N+L G+ + ++ L
Sbjct: 285 TLDLSWNHLHGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGL 344
Query: 182 -----FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236
C N+LE L L N F G P L GFS L L+ N LNGT+ +S+ QL++L
Sbjct: 345 LEKDFLACSNNTLEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQL 404
Query: 237 ESLSLDGNSLR-------------------------------------AISLCILTSPIG 259
+ LSL NSLR AI + + + +G
Sbjct: 405 QVLSLRSNSLRGTVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLG 464
Query: 260 ISDSIPDWFWDLSNKLSYLNLS-----NNHF---RGKLPDLSLRFDDLSSNLL--SGGLP 309
P+W LS L++S N F G L +L +S ++ SG LP
Sbjct: 465 --PHFPNWL-RTQKHLSMLDISASGIANAQFLYRAGLLINLVGVCLISTSQIIDCSGELP 521
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369
CW + L +LNLANN SGKI +S+G ++ TL+L NN LTG LP L+N LR+L
Sbjct: 522 KCWEQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLL 581
Query: 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSN--------------KFH----------GNI 405
DL KN + G+IP WIG SL NLIV++L+SN K H G I
Sbjct: 582 DLGKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTI 641
Query: 406 PYQFEN---------------------------------------EYKSTLGLVRCLDLS 426
P N EY TLGLV+ +D S
Sbjct: 642 PKCLNNLSGMAQNGSLVITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLGLVKSIDFS 701
Query: 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486
+NKL G IP E+ DLV L++LNLSRN+L GPI IG+L SLD LDLSRN G IP SL
Sbjct: 702 NNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGGIPXSL 761
Query: 487 SQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGT 546
SQ++ L VLDLS N LSGKIPSGTQLQSFNAS Y GN LCG PL C ++E+ T
Sbjct: 762 SQIARLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENREVSFT 821
Query: 547 DDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFLTGMKDWVS 606
++ ED D + FY + +L F +GFWGV GTL+LN SW Y YF FL+ +KDW+
Sbjct: 822 GLSNE--EDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFLSKIKDWLY 879
Query: 607 VISAVNISKL 616
V + VN++K+
Sbjct: 880 VTTTVNMNKI 889
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 287/815 (35%), Positives = 383/815 (46%), Gaps = 223/815 (27%)
Query: 22 INLGQHLEVNIERLQEL---------VLGLGKFFETSNINTFFLNTVSVTKSSDWFQVVA 72
+ + HL N+ RLQ L V LG S++ L+ ++K +DW QVV
Sbjct: 149 VTIPYHLR-NLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVT 207
Query: 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK----- 127
L LK L L C+L + PS + N S + L LS+NNL SS++YPWL NL
Sbjct: 208 NLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNL-SSAIYPWLYNLSNSLAD 266
Query: 128 --------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQY 173
F+ M +L +L LS ++LEGGIP+ G MCSL L L +N L+G+
Sbjct: 267 LDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGEL 326
Query: 174 SQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSL--- 230
S + +NL +G +SLE L L N G + + FSSL + N LNG+I +S+
Sbjct: 327 SDLTRNL-YGRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFL 385
Query: 231 ----------------------SQLSKLESLSLDGNSLR----------------AISLC 252
S LSKL+ L L NSL +S C
Sbjct: 386 SKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSC 445
Query: 253 IL------------------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP---- 290
L S ISD++P+WFW+L KL++LN+S+N RG LP
Sbjct: 446 HLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSS 505
Query: 291 -----------DLS---------------------------------------LRFDDLS 300
DLS L F DLS
Sbjct: 506 VDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLS 565
Query: 301 SNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
+NLL+G LP+C++++ L +LNLANN LSG+IP S+G L ++ TL+L+ N L G+LP L
Sbjct: 566 NNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSL 625
Query: 361 RNFSQLRVLDLEKNAIFGEIPTWIGE------------------------SLQNLIVLSL 396
+N S L+ LDL +N + GEIP WIGE L NL +L L
Sbjct: 626 KNCSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDL 685
Query: 397 KSNKFHGNIPYQFEN--------------------------------------------- 411
N G IP N
Sbjct: 686 SQNTISGAIPKCLNNLTTMVLKGEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRD 745
Query: 412 -EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF 470
EY+ LGL+R +D + N L G IPEEI L+GL+ALNLSRN+LTG I IG L SL+
Sbjct: 746 YEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLES 805
Query: 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLP 530
LDLS N FSG+IP ++ L+ L L++SYNNLSG+IPS TQLQSF+AS + GN LCGLP
Sbjct: 806 LDLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGLP 865
Query: 531 LANMCLD----EESTPGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLML 586
+ N CL D+ +T+ + F T + + F V FWGVSG L+L
Sbjct: 866 VTNKCLGGDLPRNLVMNGVIQDNQETVHEFSAWFCT-----AMGIGFSVFFWGVSGALLL 920
Query: 587 NRSWSYGYFNFLTGMKDWVSVISAVNISKLQRKFR 621
RSW + YF FL DW+ V AV ++LQR+F+
Sbjct: 921 IRSWRHAYFRFLDESWDWLYVKVAVRKARLQREFQ 955
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 263/696 (37%), Positives = 340/696 (48%), Gaps = 192/696 (27%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
T++ LDLS N+L S P A +M +L LYLS ++LEG IPK ++C+L+
Sbjct: 330 TTLAYLDLSSNHLNGS--IP-----DALGNMTTLAHLYLSANQLEGEIPKSLRDLCNLQI 382
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L LS N LSG +++ C N+LE LYL N F G P L GFS L L N
Sbjct: 383 LLLSQNNLSG----LLEKDFLACSNNTLESLYLSENQFKGSFPDLSGFSQLRELYLGFNQ 438
Query: 222 LNGTIDKSLSQL-------------------------SKLESLSLDGNSLRA-ISL---- 251
LNGT+ +S+ QL SKL L L N L ISL
Sbjct: 439 LNGTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQVP 498
Query: 252 -----------CIL------------------TSPIGISDSIPDWFWDLSNKLSYLNLSN 282
C L S GISD IP+WFW+L++ L +LN+SN
Sbjct: 499 QFQAQEIKLASCKLGPRFPNWLQTQKRLQELDISASGISDVIPNWFWNLTSNLVWLNISN 558
Query: 283 NHFRGKLPDL----SLRFD----------------------------------------- 297
NH G LP+L SL D
Sbjct: 559 NHISGTLPNLEATPSLGMDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQS 618
Query: 298 -------DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN 350
DLS+N LSG LP CW + L +LNL NN SG I +S+G L+ + TL+L NN
Sbjct: 619 SWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNN 678
Query: 351 RLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK------------- 397
LTG LP L+N LR++DL KN + G++P WIG +L +LIV++L+
Sbjct: 679 SLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNLC 738
Query: 398 -----------SNKFHGNIPYQFEN----------------------------------- 411
SN G IP N
Sbjct: 739 QLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSISYIDNTVVQW 798
Query: 412 -----EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466
EYK TL LV+ +D S+NKL+G IP E+ DLV L++LNLS+N+L G I IG+L
Sbjct: 799 KGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQLK 858
Query: 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526
SLDFLDLS+N G IP SLSQ++GL VLDLS N LSGKIPSGTQL SFNAS Y GN L
Sbjct: 859 SLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPGL 918
Query: 527 CGLPLANMCLDEESTPGPGTD--DDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTL 584
CG PL C ++E+ T ++ D +D ++ + FY + +L F +GFWGV GTL
Sbjct: 919 CGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNN----IWFYGNIVLGFIIGFWGVCGTL 974
Query: 585 MLNRSWSYGYFNFLTGMKDWVSVISAVNISKLQRKF 620
+LNRSW Y YF L +KDW+ + + NI++L+R F
Sbjct: 975 LLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF 1010
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795695|emb|CAN67736.1| hypothetical protein VITISV_022720 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 255/680 (37%), Positives = 326/680 (47%), Gaps = 165/680 (24%)
Query: 76 SLKSLVLFSCALPPVNPSF-IWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK------- 127
SL L L LP + P+ I H N STS+ L L N L +SS+YPWL N
Sbjct: 3 SLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLXSNGL-TSSIYPWLFNFSSSLVHLD 61
Query: 128 ------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQ 175
AF +M +L L LS +EL G IP FGNM +L L LS+NKL G
Sbjct: 62 LSWNDLNGSIPDAFGNMTTLAYLDLSXNELRGSIPDAFGNMTTLAYLDLSWNKLRGSIPD 121
Query: 176 VIQNLS--------------------------------------------FGCVVNSLEG 191
N++ C N+LE
Sbjct: 122 AFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTGLKEKDYLACPNNTLEV 181
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
L L +N G P L GFS L LD N L GT+ +S+ QL++L+ LS+ NSLR
Sbjct: 182 LDLSYNQLKGSFPBLSGFSQLRELFLDFNQLKGTLHESIGQLAQLQLLSIPSNSLRGTVS 241
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNN------------HFRGK----------- 288
+ + LSN LSYL+LS N FR
Sbjct: 242 A-------------NHLFGLSN-LSYLDLSFNSLTFNISLEQVPQFRASSSISLSCGTPN 287
Query: 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348
P L DLS+N LSG LP+CW + L +L+LANN SGKI +S+G L+ + TL+L
Sbjct: 288 QPSWGLSHLDLSNNRLSGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLR 347
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN---- 404
NN TG LPS L+N LR++DL KN + G+I W+G SL +LIVL+L+SN+F+G+
Sbjct: 348 NNSFTGALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSS 407
Query: 405 ------------------------------------------------IPYQF------- 409
IPY +
Sbjct: 408 LCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKGSPVLSYETIYNLSIPYHYVDSTLVQ 467
Query: 410 ----ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGEL 465
E EYK TL ++ +D S N L G IP E+ DLV L++LNLSRN+L G I IG+L
Sbjct: 468 WKGKEQEYKKTLRFIKSIDFSRNXLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQL 527
Query: 466 TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLE 525
LD LDLS+N +G IP +LSQ++ L VLDLS N LSGKIP GTQLQSF+AS Y GN
Sbjct: 528 KLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNPG 587
Query: 526 LCGLPLANMCLDEESTPGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLM 585
LCG PL C ++E T S ED D + FY + +L F +GFWGV GTL+
Sbjct: 588 LCGPPLLIRCPEDELGGVSFTSGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLL 647
Query: 586 LNRSWSYGYFNFLTGMKDWV 605
N SW Y YF L+ +KDW+
Sbjct: 648 FNSSWRYAYFQLLSKIKDWL 667
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143722|emb|CBI22583.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 238/586 (40%), Positives = 316/586 (53%), Gaps = 90/586 (15%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLK 160
S S+ LDLS N L S P AF +M +L L LS + L G IP GNM +L
Sbjct: 189 SISLAHLDLSWNQLHGS--IP-----DAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLA 241
Query: 161 KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVN 220
L LS N+L G+ + +++L C + L LYL N F G P L GFS L L N
Sbjct: 242 HLYLSANQLEGEIPKSLRDL---CNLQILLFLYLSENQFKGSFPDLSGFSQLRELYLGFN 298
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNL 280
LNGT+ +S+ QL++L+ L++ NSL+ G+S WDL +YL +
Sbjct: 299 QLNGTLPESIGQLAQLQGLNIRSNSLQGT--VSANHLFGLSK-----LWDLDLSFNYLTV 351
Query: 281 SNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340
+ + L DLS+N LSG LP CW + L +LNL NN SG I +S+G L+
Sbjct: 352 ---NISLEQSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLH 408
Query: 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK--- 397
+ TL+L NN LTG LP L+N LR++DL KN + G++P WIG +L +LIV++L+
Sbjct: 409 QMQTLHLRNNSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNE 468
Query: 398 ---------------------SNKFHGNIPYQFEN------------------------- 411
SN G IP N
Sbjct: 469 FNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSI 528
Query: 412 ---------------EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTG 456
EYK TL LV+ +D S+NKL+G IP E+ DLV L++LNLS+N+L G
Sbjct: 529 SYIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIG 588
Query: 457 PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFN 516
I IG+L SLDFLDLS+N G IP SLSQ++GL VLDLS N LSGKIPSGTQL SFN
Sbjct: 589 SIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFN 648
Query: 517 ASVYAGNLELCGLPLANMCLDEESTPGPGTD--DDSDTLEDEDDQFITLGFYVSSILSFF 574
AS Y GN LCG PL C ++E+ T ++ D +D ++ + FY + +L F
Sbjct: 649 ASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNN----IWFYGNIVLGFI 704
Query: 575 VGFWGVSGTLMLNRSWSYGYFNFLTGMKDWVSVISAVNISKLQRKF 620
+GFWGV GTL+LNRSW Y YF L +KDW+ + + NI++L+R F
Sbjct: 705 IGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF 750
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 277/750 (36%), Positives = 364/750 (48%), Gaps = 196/750 (26%)
Query: 61 VTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVY 120
+T++SDW QVV KL LK L L C+L + P + N S S+ LDLS N+L SSS+
Sbjct: 192 LTQASDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFNHL-SSSIV 250
Query: 121 PWLLNLK-------------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSL-- 159
PWL N AF M SL +L+L+D++LEGGIP+ FG MCSL
Sbjct: 251 PWLSNSSDSLVDLDLSANQLQGSIPDAFGKMTSLTNLHLADNQLEGGIPRSFGGMCSLRE 310
Query: 160 ---------------------------KKLRLSYNKLSG------QYSQVIQ-NLSFGCV 185
K L+L N+L G ++S V + ++S +
Sbjct: 311 LDLSPNNLSGPLPRSIRNMHGCVENSLKSLQLRDNQLHGSLPDFTRFSSVTELDISHNKL 370
Query: 186 VNSLE----------GLYLRWNDFTGPIPH------------------------LGGFSS 211
SL L L N TG +P +G S
Sbjct: 371 NGSLPKRFRQRSELVSLNLSDNQLTGSLPDVTMLSSLREFLIYNNRLDGNASESIGSLSQ 430
Query: 212 LEAWSLDVNCLNGTIDKS-LSQLSKLESLSLDGNSLR----------------AISLCIL 254
LE ++ N L G + ++ S LSKL+ L L NSL +S C L
Sbjct: 431 LEKLNVGRNSLQGVMSEAHFSNLSKLQELDLSHNSLVLKFTYDWAPPFLLNYLYLSSCNL 490
Query: 255 ------------------TSPIGISDSIPDWFWDLSNK-LSYLNLSNNHFRGKLPDL-SL 294
S GISD+IP+WFWDLSN L+ LN S+N+ RG P L SL
Sbjct: 491 GPHFPQWLRNQNNLWVLDISGTGISDTIPNWFWDLSNSSLTLLNFSHNNMRG--PQLISL 548
Query: 295 RFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354
DLS NLLSG LP+ + FD L L+LA+N SG+IP S+G L+ + TLNL N+ +
Sbjct: 549 ---DLSKNLLSGNLPNSLIPFDGLAFLDLAHNNFSGRIPRSLGSLSMLRTLNLRNHSFSR 605
Query: 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE------------------------SLQN 390
+LP L+ + L LDL N + G+IP W+GE L++
Sbjct: 606 RLPLSLKKCTDLMFLDLSINKLHGKIPAWMGESLLSLKFLFLQSNEFHGSIPSHFCRLRH 665
Query: 391 LIVLSLKSNKFHGNIPYQFEN--------------------------------------- 411
+ +L+L N G IP N
Sbjct: 666 IKILNLSLNNISGIIPKCLNNYTAMIQKGELTDINSGELGLGQPGQHVNKAWVDWKGRQY 725
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471
EY +LGL R +D + KL G IPEEI+ L+ L+A+NLS N+LTG I KIG+L L+ L
Sbjct: 726 EYVRSLGLFRIIDFAGKKLTGEIPEEIISLLQLVAMNLSGNNLTGGIPLKIGQLKQLESL 785
Query: 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
DLS N SG IP S + LS L L+LSYNNLSGKIPSGTQLQSFNAS +AGNL LCGLP+
Sbjct: 786 DLSGNQLSGVIPSSTASLSFLSYLNLSYNNLSGKIPSGTQLQSFNASAFAGNLALCGLPV 845
Query: 532 ANMCLDEESTPGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWS 591
+ C +E+TP P +DD+ E D+F FY + + F V FWGVSG L+L RSW
Sbjct: 846 THKCPGDEATPRPLANDDNQGNETVVDEFRRW-FYTALGIGFGVFFWGVSGALLLKRSWR 904
Query: 592 YGYFNFLTGMKDWVSVISAVNISKLQRKFR 621
+ YF FL DW+ V AV ++LQ ++
Sbjct: 905 HAYFRFLDEAWDWIYVKIAVQKARLQHIYQ 934
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 271/802 (33%), Positives = 362/802 (45%), Gaps = 236/802 (29%)
Query: 56 LNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPS---------------------- 93
L+ V+++K+ W Q + K+ SL L L LPP+ P+
Sbjct: 169 LSGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVLDLSRNGL 228
Query: 94 ----FIWHFNLSTSIETLDLSDNNLPSSSVYPW-------LLNLK----------AFQHM 132
+ W F ++ + LDL N+L S + + L+L AF +M
Sbjct: 229 TSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNELRGSIPDAFGNM 288
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS----------- 181
+L L L + L G IP FGNM SL L LS N+L G+ + + +L
Sbjct: 289 TTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLCNLQELWLSRNN 348
Query: 182 ---------FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQ 232
C ++LE L L +N F G P L GFS L SL N LNGT+ +S+ Q
Sbjct: 349 LTGLKEKDFLACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFNQLNGTLPESIGQ 408
Query: 233 L-------------------------SKLESLSLDGNSL------------RA----ISL 251
L S L +L L NSL RA ++
Sbjct: 409 LAQLQVLSIPSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISLEQVPQFRASRIMLAS 468
Query: 252 CIL------------------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293
C L S GISD+IP+WFW+L++ +LN+SNNH G LP+L
Sbjct: 469 CKLGPRFPNWLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWLNISNNHISGTLPNLQ 528
Query: 294 ---------------------------------------------------LRFDDLSSN 302
L DLS+N
Sbjct: 529 ATPLMLDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLSCGTTNQPSWGLSHLDLSNN 588
Query: 303 LLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRN 362
LSG L +CW + LF+LNLANN SGKI DS+G L+ + TL+L NN TG LPS L+N
Sbjct: 589 RLSGELSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQTLHLRNNSFTGALPSSLKN 648
Query: 363 FSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK------------------------S 398
LR++DL KN + G+I W+G SL +LIVL+L+ S
Sbjct: 649 CRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSS 708
Query: 399 NKFHGNIPYQFEN---------------------------------------EYKSTLGL 419
N G IP +N EYK TLGL
Sbjct: 709 NNLSGKIPKCLKNLTAMAQKRSQVLFYDTWYDASNPHYYVDSTLVQWKGKEQEYKKTLGL 768
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
++ +D SSNKL G IP E+ DLV L++LNLS N+L G I IG+L LD LDLS+N +
Sbjct: 769 IKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPTTIGQLKLLDVLDLSQNQLN 828
Query: 480 GSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEE 539
G IP +LSQ++ L VLDLS N L GKIP GTQLQSF+AS Y GN LCG PL C ++E
Sbjct: 829 GRIPDTLSQIADLSVLDLSNNTLLGKIPLGTQLQSFDASTYEGNPGLCGPPLLKRCPEDE 888
Query: 540 STPGPGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFLT 599
S ED D + FY + +L F +GFWGV GTL+ N SW Y YF L+
Sbjct: 889 LGGVSFISGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLFNSSWRYAYFQLLS 948
Query: 600 GMKDWVSVISAVNISKLQRKFR 621
+KDW+ V + VN+++++R +
Sbjct: 949 KIKDWLYVTTIVNMNRIRRSLQ 970
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.336 | 0.189 | 0.404 | 1.7e-38 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.323 | 0.176 | 0.390 | 1.1e-37 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.324 | 0.179 | 0.387 | 7e-37 | |
| TAIR|locus:2182870 | 1192 | EMS1 "EXCESS MICROSPOROCYTES1" | 0.336 | 0.175 | 0.376 | 2.4e-36 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.379 | 0.188 | 0.384 | 8e-36 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.606 | 0.367 | 0.318 | 7.3e-30 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.596 | 0.296 | 0.295 | 1.5e-27 | |
| TAIR|locus:2051628 | 1008 | PSKR1 "phytosulfokin receptor | 0.348 | 0.215 | 0.402 | 5.2e-35 | |
| TAIR|locus:2122239 | 1136 | AT4G36180 [Arabidopsis thalian | 0.307 | 0.168 | 0.409 | 1.8e-34 | |
| UNIPROTKB|Q5Z9N5 | 994 | P0481E08.42 "Os06g0717200 prot | 0.334 | 0.209 | 0.4 | 2.8e-34 |
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 89/220 (40%), Positives = 128/220 (58%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
L LA+N +G++P +G L+ + TLN+ +N+LTG++PS + N L+ LD+ N G +
Sbjct: 510 LQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTL 569
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P+ +G SL L +L L +N G IP N L + L + N +G+IP E+
Sbjct: 570 PSEVG-SLYQLELLKLSNNNLSGTIPVALGN-----LSRLTELQMGGNLFNGSIPRELGS 623
Query: 441 LVGL-IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
L GL IALNLS N LTG I P++ L L+FL L+ N SG IP S + LS L + SY
Sbjct: 624 LTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSY 683
Query: 500 NNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEE 539
N+L+G IP L++ + S + GN LCG PL N C+ +
Sbjct: 684 NSLTGPIPL---LRNISMSSFIGNEGLCGPPL-NQCIQTQ 719
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 84/215 (39%), Positives = 123/215 (57%)
Query: 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
++ L+ ++NRL GK+PD +G + + ++L NN L G LP+P+ + S L+VLD+ N
Sbjct: 491 KINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQF 550
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL---VRCLDLSSNKLDGA 433
G+IP +G L +L L L N F G+IP ++LG+ ++ LDL SN+L G
Sbjct: 551 SGKIPASLGR-LVSLNKLILSKNLFSGSIP--------TSLGMCSGLQLLDLGSNELSGE 601
Query: 434 IPEEIMDLVGL-IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGL 492
IP E+ D+ L IALNLS N LTG I KI L L LDLS N+ G + L+ + L
Sbjct: 602 IPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENL 660
Query: 493 GVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527
L++SYN+ SG +P + + GN +LC
Sbjct: 661 VSLNISYNSFSGYLPDNKLFRQLSPQDLEGNKKLC 695
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
Identities = 81/209 (38%), Positives = 118/209 (56%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
L+LA N+ S +P+ + L+N+ T N+ +N LTG +PS + N L+ LDL +N+ G +
Sbjct: 522 LHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSL 581
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P +G SL L +L L N+F GNIP+ N L + L + N G+IP ++
Sbjct: 582 PPELG-SLHQLEILRLSENRFSGNIPFTIGN-----LTHLTELQMGGNLFSGSIPPQLGL 635
Query: 441 LVGL-IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
L L IA+NLS N +G I P+IG L L +L L+ N SG IP + LS L + SY
Sbjct: 636 LSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSY 695
Query: 500 NNLSGKIPSGTQLQSFNASVYAGNLELCG 528
NNL+G++P Q+ + + GN LCG
Sbjct: 696 NNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724
|
|
| TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.4e-36, Sum P(2) = 2.4e-36
Identities = 81/215 (37%), Positives = 122/215 (56%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
++L+NN LSG+IP S+ L N+ L+L N LTG +P + N +L+ L+L N + G I
Sbjct: 609 ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHI 668
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P G L +L+ L+L NK G +P N + T +DLS N L G + E+
Sbjct: 669 PESFG-LLGSLVKLNLTKNKLDGPVPASLGNLKELTH-----MDLSFNNLSGELSSELST 722
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
+ L+ L + +N TG I ++G LT L++LD+S NL SG IP + L L L+L+ N
Sbjct: 723 MEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKN 782
Query: 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMC 535
NL G++PS Q + ++ +GN ELCG + + C
Sbjct: 783 NLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDC 817
|
|
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 95/247 (38%), Positives = 134/247 (54%)
Query: 287 GKLPDLSLRFDDXXXXXXXXXXPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346
GK+ +LSL D P + +L ++L NN LSG IP +G L+ + L
Sbjct: 620 GKIRELSLL--DMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELK 677
Query: 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP 406
L +N+ LP+ L N ++L VL L+ N++ G IP IG +L L VL+L N+F G++P
Sbjct: 678 LSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIG-NLGALNVLNLDKNQFSGSLP 736
Query: 407 YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL-IALNLSRNHLTGPITPKIGEL 465
+ L + L LS N L G IP EI L L AL+LS N+ TG I IG L
Sbjct: 737 -----QAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTL 791
Query: 466 TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLE 525
+ L+ LDLS N +G +P S+ + LG L++S+NNL GK+ Q + A + GN
Sbjct: 792 SKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTG 849
Query: 526 LCGLPLA 532
LCG PL+
Sbjct: 850 LCGSPLS 856
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 7.3e-30, P = 7.3e-30
Identities = 134/421 (31%), Positives = 182/421 (43%)
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
A ++ SL+ LS + L G IP G + SL + L N LSG I NLS
Sbjct: 195 ALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLS------ 248
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSL---EAWSLDVNCLNGTIDKXXXXXXXXXXXXXDGN 244
SL +R N G IP F +L E + N +G I GN
Sbjct: 249 SLRAFSVRENKLGGMIP-TNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGN 307
Query: 245 SLRAISLCILTSPIGISDSIPD-WFWDXXXXXXXXXXXXXHFRGKLPDLS-LRFDDXXXX 302
I +TS G ++ + + W F L + S L+ +
Sbjct: 308 LFSGI----ITSGFGRLRNLTELYLWRNLFQTREQDDWG--FISDLTNCSKLQTLNLGEN 361
Query: 303 XXXXXXPDCWLHFDR-LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR 361
P+ + + L L L N+++G IP +G L + L L NN G LPS L
Sbjct: 362 NLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLG 421
Query: 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS-TLGL- 419
L +L +N + G IP IG +L L +L L +NKF G IPY N +LGL
Sbjct: 422 RLKNLGILLAYENNLSGSIPLAIG-NLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLS 480
Query: 420 --------------VRCLDL----SSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461
++ L + S N L+G+IP+EI L L+ + N L+G I
Sbjct: 481 TNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNT 540
Query: 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG----TQLQSFNA 517
+G+ L +L L NL SGSIP +L QL GL LDLS NNLSG+IP+ T L S N
Sbjct: 541 LGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNL 600
Query: 518 S 518
S
Sbjct: 601 S 601
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 122/413 (29%), Positives = 189/413 (45%)
Query: 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188
FQ +V L +LYL+++ LEG + N+ +L++ L +N L G+ V + + F +
Sbjct: 382 FQ-LVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK---VPKEIGF---LGK 434
Query: 189 LEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNGTIDKXXXXXXXXXXXXXDGNSL- 246
LE +YL N F+G +P +G + L+ N L+G I N L
Sbjct: 435 LEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELV 494
Query: 247 ----RAISLCILTSPIGISD-----SIPDWFWDXXXXXXXXXXXXXHFRGKLPD--LSL- 294
++ C + I ++D SIP F +G LPD ++L
Sbjct: 495 GNIPASLGNCHQMTVIDLADNQLSGSIPSSF-GFLTALELFMIYNNSLQGNLPDSLINLK 553
Query: 295 ---RFDDXXXXXXXXXXPDC----WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL 347
R + P C +L FD + N G IP +G N+ L L
Sbjct: 554 NLTRINFSSNKFNGSISPLCGSSSYLSFD------VTENGFEGDIPLELGKSTNLDRLRL 607
Query: 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY 407
N+ TG++P S+L +LD+ +N++ G IP +G + L + L +N G IP
Sbjct: 608 GKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG-LCKKLTHIDLNNNYLSGVIP- 665
Query: 408 QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTS 467
+ L L+ L LSSNK G++P EI L ++ L L N L G I +IG L +
Sbjct: 666 ----TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQA 721
Query: 468 LDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT-QLQSFNASV 519
L+ L+L N SG +P ++ +LS L L LS N L+G+IP QLQ +++
Sbjct: 722 LNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSAL 774
|
|
| TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 91/226 (40%), Positives = 126/226 (55%)
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369
D LHF++L +L +AN RL+G +P + N + L+L NRLTG +PS + +F L L
Sbjct: 409 DSSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYL 468
Query: 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFE-NE------YKSTLGLVRC 422
DL N+ GEIP + + L++L ++ N+ + P+ + NE Y G
Sbjct: 469 DLSNNSFTGEIPKSLTK-LESLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPPT 527
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
++L N L G I EE +L L +L N L+G I + +TSL+ LDLS N SGSI
Sbjct: 528 IELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSI 587
Query: 483 PCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCG 528
P SL QLS L ++YNNLSG IPSG Q Q+F S + N LCG
Sbjct: 588 PVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCG 632
|
|
| TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 81/198 (40%), Positives = 120/198 (60%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
L+L+ NR SG +P S+ L+N+ LNL N +G++P+ + N +L LDL K + GE+
Sbjct: 457 LDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEV 516
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P + L N+ V++L+ N F G +P F S+L +R ++LSSN G IP+
Sbjct: 517 PVELS-GLPNVQVIALQGNNFSGVVPEGF-----SSLVSLRYVNLSSNSFSGEIPQTFGF 570
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
L L++L+LS NH++G I P+IG ++L+ L+L N G IP LS+L L VLDL N
Sbjct: 571 LRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQN 630
Query: 501 NLSGKIPSG-TQLQSFNA 517
NLSG+IP +Q S N+
Sbjct: 631 NLSGEIPPEISQSSSLNS 648
|
|
| UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 86/215 (40%), Positives = 123/215 (57%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
+ LA N L+G +P + L + L +N LTG+LP + ++ +L L N I G I
Sbjct: 418 VRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGG-DKIGMLLLGNNGIGGRI 476
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P IG +L L LSL+SN F G +P + N K+ L R L++S N L GAIP+E++
Sbjct: 477 PPAIG-NLPALQTLSLESNNFSGALPPEIGN-LKN---LSR-LNVSGNALTGAIPDELIR 530
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
L A++LSRN +G I I L L L++SRN +G +P +S ++ L LD+SYN
Sbjct: 531 CASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLTTLDVSYN 590
Query: 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMC 535
+LSG +P Q FN S + GN LCG P+A+ C
Sbjct: 591 SLSGPVPMQGQFLVFNESSFVGNPGLCGGPVADAC 625
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 622 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-38 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 5e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 9e-52
Identities = 162/481 (33%), Positives = 228/481 (47%), Gaps = 89/481 (18%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+S++ LDL N L + L NL SL+ L L+ ++L G IP+ G M SLK
Sbjct: 164 SSLKVLDLGGNVL-VGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKW 216
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVN 220
+ L YN LSG+ I L+ SL L L +N+ TGPIP LG +L+ L N
Sbjct: 217 IYLGYNNLSGEIPYEIGGLT------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNL 280
L+G I S+ L KL SL L NSL S IP+ L N L L+L
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSL--------------SGEIPELVIQLQN-LEILHL 315
Query: 281 SNNHFRGKLP-------------------------DL----SLRFDDLSSNLLSGGLPDC 311
+N+F GK+P +L +L DLS+N L+G +P+
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375
Query: 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS-----PLRNF--- 363
LF L L +N L G+IP S+G ++ + L +N +G+LPS PL F
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435
Query: 364 ----------------SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY 407
L++L L +N FG +P G L L L N+F G +P
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLSRNQFSGAVPR 493
Query: 408 QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTS 467
+ +L + L LS NKL G IP+E+ L++L+LS N L+G I E+
Sbjct: 494 KL-----GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548
Query: 468 LDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527
L LDLS+N SG IP +L + L +++S+N+L G +PS + NAS AGN++LC
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608
Query: 528 G 528
G
Sbjct: 609 G 609
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-50
Identities = 152/433 (35%), Positives = 220/433 (50%), Gaps = 51/433 (11%)
Query: 98 FNLSTSIETLDLSDNNL----PSSSVYPWLLNLKAFQHMVS------------LKSLYLS 141
F S+S+ L+LS+NN P S+ P L L +M+S LK L L
Sbjct: 114 FTTSSSLRYLNLSNNNFTGSIPRGSI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172
Query: 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG 201
+ L G IP N+ SL+ L L+ N+L GQ + + + SL+ +YL +N+ +G
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM------KSLKWIYLGYNNLSG 226
Query: 202 PIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260
IP+ +GG +SL L N L G I SL L L+ L L N L
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-------------- 272
Query: 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLS-----SNLLSGGLPDCWLHF 315
S IP + L +S L+LS+N G++P+L ++ +L SN +G +P
Sbjct: 273 SGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331
Query: 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375
RL +L L +N+ SG+IP ++G NN+ L+L N LTG++P L + L L L N+
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391
Query: 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435
+ GEIP +G + ++L + L+ N F G +P +F + L LV LD+S+N L G I
Sbjct: 392 LEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEF-----TKLPLVYFLDISNNNLQGRIN 445
Query: 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
D+ L L+L+RN G + P L+ LDLSRN FSG++P L LS L L
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 496 DLSYNNLSGKIPS 508
LS N LSG+IP
Sbjct: 505 KLSENKLSGEIPD 517
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-38
Identities = 97/245 (39%), Positives = 139/245 (56%), Gaps = 20/245 (8%)
Query: 272 SNKLSYLNLSNNHFRGKLPDLSLRFD-----DLSSNLLSGGLP-DCWLHFDRLFILNLAN 325
S+++ ++LS + GK+ R +LS+N LSG +P D + L LNL+N
Sbjct: 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
N +G IP G + N+ TL+L NN L+G++P+ + +FS L+VLDL N + G+IP +
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLD---LSSNKLDGAIPEEIMDLV 442
+L +L L+L SN+ G IP + LG ++ L L N L G IP EI L
Sbjct: 186 -NLTSLEFLTLASNQLVGQIPRE--------LGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236
Query: 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
L L+L N+LTGPI +G L +L +L L +N SG IP S+ L L LDLS N+L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296
Query: 503 SGKIP 507
SG+IP
Sbjct: 297 SGEIP 301
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 8e-38
Identities = 144/439 (32%), Positives = 204/439 (46%), Gaps = 49/439 (11%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK-FFGNMC 157
N S+ + ++DLS N+ S + A + ++++ LS+++L G IP F
Sbjct: 66 NNSSRVVSIDLSGKNI-SGKISS------AIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWS 216
SL+ L LS N +G I S LE L L N +G IP+ +G FSSL+
Sbjct: 119 SLRYLNLSNNNFTGS----IPRGSIPN----LETLDLSNNMLSGEIPNDIGSFSSLKVLD 170
Query: 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLS 276
L N L G I SL+ L+ LE L+L N L IP + + L
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQL--------------VGQIPRELGQMKS-LK 215
Query: 277 YLNLSNNHFRGKLPD-----LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK 331
++ L N+ G++P SL DL N L+G +P + L L L N+LSG
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275
Query: 332 IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391
IP S+ L + +L+L +N L+G++P + L +L L N G+IP + SL L
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRL 334
Query: 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451
VL L SNKF G IP T+ LDLS+N L G IPE + L L L
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTV-----LDLSTNNLTGEIPEGLCSSGNLFKLILFS 389
Query: 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-- 509
N L G I +G SL + L N FSG +P ++L + LD+S NNL G+I S
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449
Query: 510 --TQLQSFNASV--YAGNL 524
LQ + + + G L
Sbjct: 450 DMPSLQMLSLARNKFFGGL 468
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-17
Identities = 53/113 (46%), Positives = 73/113 (64%), Gaps = 8/113 (7%)
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
L L + L G IP +I L L ++NLS N + G I P +G +TSL+ LDLS N F+GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 483 PCSLSQLSGLGVLDLSYNNLSGKIPS--GTQL---QSFNASVYAGNLELCGLP 530
P SL QL+ L +L+L+ N+LSG++P+ G +L SFN + AG LCG+P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG---LCGIP 532
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 310 DCWLHFDRL----FI--LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF 363
DC FD FI L L N L G IP+ + L ++ ++NL N + G +P L +
Sbjct: 408 DC--QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465
Query: 364 SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP 406
+ L VLDL N+ G IP +G+ L +L +L+L N G +P
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP 357
L + L G +P+ L +NL+ N + G IP S+G + ++ L+L N G +P
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
L + LR+L+L N++ G +P +G
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 278 LNLSNNHFRGKLP-DLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
L L N RG +P D+S L+ +LS N + G +P L +L+L+ N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
P+S+G L ++ LNL+ N L+G++P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
L L L G I I +L L ++LS N G+IP SL ++ L VLDLSYN+ +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 506 IP 507
IP
Sbjct: 482 IP 483
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 62/298 (20%), Positives = 91/298 (30%), Gaps = 72/298 (24%)
Query: 63 KSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFI--------------WHFNLSTSIE--- 105
K+ +++ KL L+ L L L + N + I
Sbjct: 11 KTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL 70
Query: 106 --------------TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151
LDLSDN L ++ SL+ L L+++ L +
Sbjct: 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVL----ESLLRSSSLQELKLNNNGLGDRGLR 126
Query: 152 FFG-----NMCSLKKLRLSYNKLSGQYSQVIQN-LSFGCVVNSLEGLYLRWNDFTGP-IP 204
+L+KL L N+L G + + L L+ L L N I
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR---DLKELNLANNGIGDAGIR 183
Query: 205 HLG----GFSSLEAWSLDVNCLN--GTIDKS--LSQLSKLESLSLDGNSLRAISLCILTS 256
L +LE L+ N L G + L+ L LE L+L N+L L S
Sbjct: 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243
Query: 257 PIGISDSIPDWFWDLSNKLSYLNLSNNH--------FRGKLPD-LSLRFDDLSSNLLS 305
+ L L+LS N L + SL DL N
Sbjct: 244 A----------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 274 KLSYLNLSNNHFRGKLPD-----LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
L +NLS N RG +P SL DLS N +G +P+ L ILNL N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Query: 329 SGKIPDSMG 337
SG++P ++G
Sbjct: 503 SGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
+H L+S+ LS + + G IP G++ SL+ L LSYN +G + + L+
Sbjct: 440 KLRH---LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT------ 490
Query: 188 SLEGLYLRWNDFTGPIP-HLGG 208
SL L L N +G +P LGG
Sbjct: 491 SLRILNLNGNSLSGRVPAALGG 512
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 62/292 (21%), Positives = 89/292 (30%), Gaps = 79/292 (27%)
Query: 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFG-----NMCS 158
++ LDLSDN L ++ SL+ L L+++ L + +
Sbjct: 83 LQELDLSDNALGPDGCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138
Query: 159 LKKLRLSYNKLSGQYSQVIQN-LSFGCVVNSLEGLYLRWNDFTGP-IPHLGGFSSLEAWS 216
L+KL L N+L G + + L L+ L L N I L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANR---DLKELNLANNGIGDAGIRALA--------- 186
Query: 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLS 276
+ L LE L L+ N L +++++ L
Sbjct: 187 -----------EGLKANCNLEVLDLNNNGLTDEGA------SALAETLASL-----KSLE 224
Query: 277 YLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM 336
LNL +N L D L+S LLS L L+L+ N I D
Sbjct: 225 VLNLGDN----NLTDAGAA--ALASALLSPN--------ISLLTLSLSCN----DITDDG 266
Query: 337 GFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESL 388
L L L LDL N E + ESL
Sbjct: 267 A----------------KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 189 LEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
L+ + L N G IP LG +SLE L N NG+I +SL QL+ L L+L+GNSL
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 34/250 (13%)
Query: 216 SLDVNCLNGTIDKS-LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
SLD+N + S L +L+ L SL LD N++ IP L +
Sbjct: 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI---------------TDIPPLIGLLKSN 141
Query: 275 LSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG 330
L L+LS+N L +L+ DLS N LS LP + L L+L+ N++S
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS- 199
Query: 331 KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390
+P + L+ + L+L NN + +L S L N L L+L N + ES+ N
Sbjct: 200 DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP-----ESIGN 253
Query: 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLS 450
L +L++ N +L +R LDLS N L A+P L+ L+ L
Sbjct: 254 L--SNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIA--LLLLLLELLL 307
Query: 451 RNHLTGPITP 460
LT
Sbjct: 308 NLLLTLKALE 317
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 103 SIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKL 162
++++LDLS+N L ++ AF+ + +LK L LS + L P+ F + SL+ L
Sbjct: 1 NLKSLDLSNNRL-------TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53
Query: 163 RLSYNKL 169
LS N L
Sbjct: 54 DLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.61 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.47 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.36 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.29 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.25 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.21 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.18 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.17 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.12 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.12 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.11 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.88 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.87 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.83 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.78 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.67 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.59 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.58 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.58 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.43 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.41 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.26 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.24 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.23 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.2 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.05 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.99 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.98 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.96 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.78 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.76 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.75 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.37 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.27 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.97 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.42 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.36 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.31 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.75 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.5 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.32 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.9 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.26 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.65 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.77 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.77 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.43 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.43 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 87.54 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 87.1 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 86.24 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 86.13 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 85.54 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 80.99 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=525.40 Aligned_cols=497 Identities=33% Similarity=0.447 Sum_probs=424.6
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC------CCCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE------TSNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
+++++.|+++++.+.+.+|..+. ..+++|++|++++|.+++ +++|++|++++|.+++. +. .+.+++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~----~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~---~~~~l~ 164 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN---DIGSFS 164 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHh----ccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh---HHhcCC
Confidence 56677778887777556665533 367888888888888764 38888888888888766 66 788889
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcC
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGN 155 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 155 (622)
+|++|++++|.+.+..| ..+.++ ++|++|++++|.+.+ .+|..+ +.+++|++|++++|.+.+.+|..++.
T Consensus 165 ~L~~L~L~~n~l~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~l------~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIP--NSLTNL-TSLEFLTLASNQLVG-QIPREL------GQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CCCEEECccCcccccCC--hhhhhC-cCCCeeeccCCCCcC-cCChHH------cCcCCccEEECcCCccCCcCChhHhc
Confidence 99999999998888777 678888 889999999998876 666655 67888889999988888888888888
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 234 (622)
+++|++|++++|.+.+..|..+.++ ++ |++|++++|.+.+..|. +..+++|++|++++|.+.+.+|..+.+++
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNL-----KN-LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCC-----CC-CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 8899999999888888888874444 44 88888888888877776 88888888888888888888888888888
Q ss_pred CCCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-----cccEEeC
Q 037539 235 KLESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDL 299 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~L~~L~l 299 (622)
+|++|++++|.+++.....+ ++.+.+.+.+|..+... ++|+.|++++|++.+..|.. .++.+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 88888888888775442211 56677777888877654 58899999999888777652 6888999
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccccc
Q 037539 300 SSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379 (622)
Q Consensus 300 s~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~ 379 (622)
++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 99999888888899999999999999999988888899999999999999999988888888899999999999998888
Q ss_pred CchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc
Q 037539 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT 459 (622)
Q Consensus 380 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 459 (622)
+|... ..++|+.|++++|++.+..|..+. .+++|+.|++++|.+.+.+|+.+..+++|++|+|++|.+++.+|
T Consensus 468 ~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 468 LPDSF--GSKRLENLDLSRNQFSGAVPRKLG-----SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred cCccc--ccccceEEECcCCccCCccChhhh-----hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 87765 368999999999999988887776 78999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 460 PKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 460 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|..+++.++....+.||+.+|+.+
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=494.80 Aligned_cols=493 Identities=33% Similarity=0.450 Sum_probs=431.0
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC---------CCCccEEEcCCcccCCC-CcchHhhcC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE---------TSNINTFFLNTVSVTKS-SDWFQVVAK 73 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~L~~L~Ls~n~l~~~-~~~~~~l~~ 73 (622)
.++.+++++++++.+.++..+. .+++|++|+|++|.+++ +++|++|++++|.+++. |. ..
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF-----RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GS 138 (968)
T ss_pred CcEEEEEecCCCccccCChHHh-----CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----cc
Confidence 3566788887776555544444 79999999999998863 38999999999999877 43 46
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++|++|+|++|.+.+..| ..+..+ ++|++|++++|.+.+ .+|..+ +++++|++|++++|.+.+..|..+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~~------~~l~~L~~L~L~~n~l~~~~p~~l 208 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIP--NDIGSF-SSLKVLDLGGNVLVG-KIPNSL------TNLTSLEFLTLASNQLVGQIPREL 208 (968)
T ss_pred cCCCCEEECcCCcccccCC--hHHhcC-CCCCEEECccCcccc-cCChhh------hhCcCCCeeeccCCCCcCcCChHH
Confidence 8999999999999998888 788888 999999999999987 677665 788999999999999999999999
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+.+++|+.|++++|.+.+..|..+..+ + +|++|++++|.+.+..|. ++++++|++|++++|.+.+..|..+..
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGL-----T-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcC-----C-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 999999999999999999999885554 4 499999999999988887 999999999999999999899999999
Q ss_pred CCCCCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-----cccEE
Q 037539 233 LSKLESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFD 297 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~L~~L 297 (622)
+++|++|++++|.+.+.....+ ++.|.+.+.+|..+... ++|+.|++++|.+.+..|.. +|+.|
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 9999999999999876532211 56777788888777654 68999999999988777752 78899
Q ss_pred eCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccc
Q 037539 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 298 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~ 377 (622)
++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 99999998888888888899999999999998888888889999999999999999888889999999999999999998
Q ss_pred ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC
Q 037539 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP 457 (622)
Q Consensus 378 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 457 (622)
+.+|.... .+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+.++++|+.|++++|.+.+.
T Consensus 442 ~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 442 GRINSRKW-DMPSLQMLSLARNKFFGGLPDSF------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred CccChhhc-cCCCCcEEECcCceeeeecCccc------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 87877666 68999999999999998888765 468999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 458 ITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 458 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|+.+.++++|++|+|++|.+++.+|..+..+++|++|++++|++++.+|.. ..+..+..+.+.+|+..+..|
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999999999999975 446677888888888766444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=333.21 Aligned_cols=435 Identities=23% Similarity=0.230 Sum_probs=257.2
Q ss_pred CEEEccCCCCCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCC
Q 037539 78 KSLVLFSCALPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM 156 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 156 (622)
..||.+.+.+..... ..+ +-+++.-+.||+++|++.+ .+...|.++++|+.+++.+|.++ .+|..-+..
T Consensus 55 ~lldcs~~~lea~~~--~~l~g~lp~~t~~LdlsnNkl~~-------id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDK--SRLKGFLPSQTQTLDLSNNKLSH-------IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred eeeecCccccccccc--cccCCcCccceeeeecccccccc-------CcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 345555555543221 111 1233455667777777776 22233467777777777777777 566655556
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+|+.|+|.+|.|+......++.+ +. |++|||+.|.++..... |..-.++++|+|++|.|+......|..+.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l-----~a-lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL-----PA-LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH-----hh-hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 667777777777776666664433 33 77777777777754444 666677777777777777777777777777
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc----CCCC-cccEEeCCCCcCccccCc
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK----LPDL-SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~-~L~~L~ls~n~l~~~~~~ 310 (622)
|.+|.|+.|+++ .+|...|+.+++|+.|++..|++.-. +..+ +++.|.+..|.+...-..
T Consensus 199 L~tlkLsrNrit---------------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 199 LLTLKLSRNRIT---------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred heeeecccCccc---------------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 777777777776 56666677666777777777766511 0011 344444555555545555
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.|..+.++++|+|+.|++......++.++.+|+.|++|+|.|....++....+++|++|+|++|.| ..++..-+..+..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI-TRLDEGSFRVLSQ 342 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc-ccCChhHHHHHHH
Confidence 566666666666666666655555566666666666666666655566666666666666666666 4555554545666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc---hHHhhcccccceeecCCccccCCCccccCCCCC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALNLSRNHLTGPITPKIGELTS 467 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 467 (622)
|++|+|++|.+... ....+..+++|++|||++|.+...+ ...|..+++|+.|++.+|++......+|.++++
T Consensus 343 Le~LnLs~Nsi~~l-----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 343 LEELNLSHNSIDHL-----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred hhhhcccccchHHH-----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 66666666666522 2222225666666666666665433 234555666666666666666444455666666
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 468 LDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTD 547 (622)
Q Consensus 468 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~ 547 (622)
|++|||.+|.|..+-|++|..+ .|++|-+..-.+.|. +++..+..+.+..++. ......|..|+...+....
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD----Cql~Wl~qWl~~~~lq---~sv~a~CayPe~Lad~~i~ 489 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD----CQLKWLAQWLYRRKLQ---SSVIAKCAYPEPLADQSIV 489 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccceEEe----ccHHHHHHHHHhcccc---cceeeeccCCcccccceeE
Confidence 6666666666666666666665 566666555555544 2333333222222211 1112468888877766554
Q ss_pred CCCCCccCcc
Q 037539 548 DDSDTLEDED 557 (622)
Q Consensus 548 ~~~~~~~~~~ 557 (622)
..+.....|+
T Consensus 490 svd~~~lvC~ 499 (873)
T KOG4194|consen 490 SVDTANLVCD 499 (873)
T ss_pred eechhhceec
Confidence 4444343343
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=321.97 Aligned_cols=385 Identities=23% Similarity=0.234 Sum_probs=297.8
Q ss_pred cEEeCCCCCCCCC----------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc
Q 037539 36 QELVLGLGKFFET----------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI 104 (622)
Q Consensus 36 ~~L~L~~n~i~~~----------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L 104 (622)
+.||.+++.+... +.-+.|++++|.+... +. .|.++++|+.+++..|.++.. | .+.....+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~---~f~nl~nLq~v~l~~N~Lt~I-P---~f~~~sghl 127 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFE---FFYNLPNLQEVNLNKNELTRI-P---RFGHESGHL 127 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHH---HHhcCCcceeeeeccchhhhc-c---cccccccce
Confidence 4567777766442 5566788888877777 55 677788888888888777654 3 233332667
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~ 184 (622)
+.|+|.+|.|+. .....++.++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.
T Consensus 128 ~~L~L~~N~I~s-------v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln--- 197 (873)
T KOG4194|consen 128 EKLDLRHNLISS-------VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN--- 197 (873)
T ss_pred eEEeeecccccc-------ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc---
Confidence 888888887775 2233446677788888888877755555666667788888888887776666644443
Q ss_pred cCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccC
Q 037539 185 VVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDS 263 (622)
Q Consensus 185 ~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 263 (622)
+|..|.|+.|.++...+. |.++++|+.|+|..|.|.-.-...|.++++|+.|.+..|+|. .
T Consensus 198 ---sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~---------------k 259 (873)
T KOG4194|consen 198 ---SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS---------------K 259 (873)
T ss_pred ---hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc---------------c
Confidence 477788888877755555 777888888888888776444557777778888888777776 4
Q ss_pred CchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCcc
Q 037539 264 IPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIW 343 (622)
Q Consensus 264 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 343 (622)
+.++.|..+.++++|+++.|+++ ..-...+.+++.|+.|++++|.|....++.....++|+
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~-------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQ-------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred ccCcceeeecccceeecccchhh-------------------hhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 45555555566777766666655 34456778999999999999999988888888899999
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
+|+|++|+++...++.|..+..|++|+|++|.+ ..+.++.|.++.+|++|||++|.+...+-+ ....+.++++|+.|
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKL 397 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhhe
Confidence 999999999988899999999999999999999 788888888999999999999999876654 33344579999999
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
++.||++..+.-.+|.++++|+.|||.+|.+...-|++|..+ .|+.|.+..-.+
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 999999997777899999999999999999998889999999 999998865443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=298.65 Aligned_cols=420 Identities=25% Similarity=0.307 Sum_probs=260.7
Q ss_pred cCCcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCccc
Q 037539 33 ERLQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIE 105 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~ 105 (622)
..++.+++++|.+... ..|..|++++|.++..|. +++.+..++.++.++|++... | ..+... .+|+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~---aig~l~~l~~l~vs~n~ls~l-p--~~i~s~-~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA---AIGELEALKSLNVSHNKLSEL-P--EQIGSL-ISLV 117 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH---HHHHHHHHHHhhcccchHhhc-c--HHHhhh-hhhh
Confidence 4566667777765333 666667777777666655 666666777777777766543 3 355666 6677
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcccccc
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCV 185 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~ 185 (622)
.++.++|.+. .+|+.+ +.+..|..++..+|+++ ..|+++..+.+|..+++.+|+++...|..+. +.
T Consensus 118 ~l~~s~n~~~--el~~~i------~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~---- 183 (565)
T KOG0472|consen 118 KLDCSSNELK--ELPDSI------GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK---- 183 (565)
T ss_pred hhhcccccee--ecCchH------HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HH----
Confidence 7777777665 444444 45566666666666666 5566666666666777777766655554432 22
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
.|++||...|.+...+|.++.+.+|+.|++..|++. ..| .|.++..|++|.++.|+|+ .+|
T Consensus 184 --~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~---------------~lp 244 (565)
T KOG0472|consen 184 --RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE---------------MLP 244 (565)
T ss_pred --HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH---------------hhH
Confidence 366666666666544444666666666666666665 344 5666666666666666665 456
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc----------
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK---------- 331 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~---------- 331 (622)
+...+.++++..||+++|++......+ +++.||+|+|.++ ..|..++++ .|+.|-+.+|.+...
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 666555566666666666666333222 4666666666666 345556666 666666666653200
Q ss_pred ----------------------------CCC---ccCCCCCccEEeeeCCcCCCCCCccccCC--CCccEEEccCCcc--
Q 037539 332 ----------------------------IPD---SMGFLNNIWTLNLHNNRLTGKLPSPLRNF--SQLRVLDLEKNAI-- 376 (622)
Q Consensus 332 ----------------------------~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l--~~L~~L~L~~n~i-- 376 (622)
.+. ......+.+.|++++-+++....+.|..- .-.+..+++.|++
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e 402 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE 402 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh
Confidence 000 01112345555555555552222222111 1134444444444
Q ss_pred ---------------------cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch
Q 037539 377 ---------------------FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435 (622)
Q Consensus 377 ---------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 435 (622)
.+-+|..+. .+++|..|++++|.+. .+|..+. .+..|+.||++.|++. .+|
T Consensus 403 lPk~L~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~-----~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMG-----SLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecccchhh-hcchhhh-----hhhhhheecccccccc-cch
Confidence 144444444 5777888888877765 5555544 5666888888888777 777
Q ss_pred HHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 436 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
..+..+..++++-.++|++....++.+.++.+|.+|||.+|.+. .+|..++++.+|++|+++||+|.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777777777777778887667777888888888888888887 67777888888888888888887
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=295.01 Aligned_cols=430 Identities=26% Similarity=0.310 Sum_probs=354.9
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
..++.+++++|.++...+ .+.++..|.+|++.+|++....| ++..+ ..++.++.++|++. .+|+.+
T Consensus 45 v~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~lp~---aig~l-~~l~~l~vs~n~ls--~lp~~i----- 110 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQLPA---AIGEL-EALKSLNVSHNKLS--ELPEQI----- 110 (565)
T ss_pred cchhhhhhccCchhhccH---hhhcccceeEEEeccchhhhCCH---HHHHH-HHHHHhhcccchHh--hccHHH-----
Confidence 789999999999998843 69999999999999999987655 78888 99999999999998 688777
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
..+.+|++++.++|.+. ..|+.++.+..|+.++..+|+++. .|..+..+. +|..+++.+|++....+..-+
T Consensus 111 -~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~------~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 111 -GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS------KLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred -hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH------HHHHhhccccchhhCCHHHHH
Confidence 67899999999999998 788889999999999999999985 555544443 499999999999987777444
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
++.|++||...|-+. .+|..++.+.+|..|++..|++. .+| .|. .+..|+++++..|++...
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~---------------~lP-ef~-gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR---------------FLP-EFP-GCSLLKELHVGENQIEML 243 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc---------------cCC-CCC-ccHHHHHHHhcccHHHhh
Confidence 999999999999887 67889999999999999999998 445 222 235899999999998733
Q ss_pred CCC----C-cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC---------
Q 037539 289 LPD----L-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG--------- 354 (622)
Q Consensus 289 ~~~----~-~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------- 354 (622)
... + .+..||+..|.+. ..|..+.-+++|++||+++|.|+ ..|..++++ .|+.|-+.+|.+..
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 222 2 7899999999998 77888999999999999999999 667789999 99999999997530
Q ss_pred -----------------------------CCCc---cccCCCCccEEEccCCcccccCchhHHhhcc--cccEeecCCCc
Q 037539 355 -----------------------------KLPS---PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ--NLIVLSLKSNK 400 (622)
Q Consensus 355 -----------------------------~~~~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~--~L~~L~L~~n~ 400 (622)
..+. ....+.+.+.|++++-++ +.+|..+|+.-. -.+..+++.|+
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccch
Confidence 0001 122345789999999998 889999885332 37788899988
Q ss_pred CcccCChhh-------------------hHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccc
Q 037539 401 FHGNIPYQF-------------------ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 401 l~~~~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+. .+|..+ .....+.+++|..|+|++|.+. .+|..++.+..|++|++++|++. ..|..
T Consensus 400 L~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 400 LC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred Hh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 76 333332 1233347888889999988888 78888888888999999999887 78888
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCC
Q 037539 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 462 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 526 (622)
+..+..++.+-.++|++....|+.+.++..|++||+.+|.+....|.-+-...+..+.+.|||+-
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88888888888888999888888899999999999999999976666688889999999999874
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-34 Score=300.90 Aligned_cols=429 Identities=26% Similarity=0.303 Sum_probs=291.7
Q ss_pred CcEEeCCCCCCCCC--------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 35 LQELVLGLGKFFET--------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 35 L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
++.|+++.|.+-.. -+|+.|++++|.+...|. .+..+++|+.|+++.|.+.... .+..++ .+|++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp---~s~~~~-~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVP---SSCSNM-RNLQY 95 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCc---hhhhhh-hcchh
Confidence 56666666655331 337777777777766655 5666777777777777665542 355566 77777
Q ss_pred EEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccC
Q 037539 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~ 186 (622)
|.|.+|.+. ..|..+ ..+.+|++|++++|.+. ..|..+..+..++.+..++|.-....+..
T Consensus 96 lnL~~n~l~--~lP~~~------~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~---------- 156 (1081)
T KOG0618|consen 96 LNLKNNRLQ--SLPASI------SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT---------- 156 (1081)
T ss_pred heeccchhh--cCchhH------HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----------
Confidence 777777665 455544 56677777777777766 56666777777777777776211111111
Q ss_pred CCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 187 NSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 187 ~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
..+.+++..|.+.+.++. +..+.. .|+|.+|.+. ...+..+.+|+.|....|++....
T Consensus 157 -~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--------------- 215 (1081)
T KOG0618|consen 157 -SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--------------- 215 (1081)
T ss_pred -cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---------------
Confidence 256666666666655554 554444 5777777765 124566677777777777765432
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 342 (622)
..-++++.|+..+|.+....+.. ++++++++.|.+.+ +|.++..+.+|+.++..+|+++ .+|..+....+|
T Consensus 216 ----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 216 ----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSL 289 (1081)
T ss_pred ----ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence 11247777888877777444432 77888888887774 4477778888888888888875 566666667777
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHh-------------------------hcccccEeecC
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE-------------------------SLQNLIVLSLK 397 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-------------------------~l~~L~~L~L~ 397 (622)
+.|.+..|.+. .+|....+.+.|++|+|..|.+ ..+|...+. ..+.|+.|++.
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 77777777776 5666667777778888877777 556554332 23356667777
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+|.+++..-..+. +.++|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..++.|++|...+|+
T Consensus 368 nN~Ltd~c~p~l~-----~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLV-----NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred cCcccccchhhhc-----cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence 7777765544444 6888999999999888666667788888999999999988 677888888888888888888
Q ss_pred cCccCCccccCCCCCCEEECcCCcCcc-cCCCCCcCCccCcccccCCcCC
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSG-KIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~-~~p~~~~~~~l~~~~~~~n~~l 526 (622)
+. ..| .+..++.|+.+|+|.|+++. .+|.....+.++.+++.||.++
T Consensus 442 l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 442 LL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 87 667 67888888888888888864 3444433377788888888753
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-34 Score=284.14 Aligned_cols=361 Identities=24% Similarity=0.304 Sum_probs=222.1
Q ss_pred cCcCCcEEeCCCCCCCCC---------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 31 NIERLQELVLGLGKFFET---------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~---------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
-++..+-.|+++|.++|. ++++.|.|....+...|+ .++.+.+|++|.+++|++..... .+..+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe---EL~~lqkLEHLs~~HN~L~~vhG---ELs~L- 77 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE---ELSRLQKLEHLSMAHNQLISVHG---ELSDL- 77 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChH---HHHHHhhhhhhhhhhhhhHhhhh---hhccc-
Confidence 466677788888888765 778888888777777766 78888888888888887765432 56677
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+.|+.+++..|++..-.+|..+ -.+..|+.||||+|++. ..|..+..-+++-+|+||+|+|..+....+.++
T Consensus 78 p~LRsv~~R~N~LKnsGiP~di------F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL- 149 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDI------FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL- 149 (1255)
T ss_pred hhhHHHhhhccccccCCCCchh------cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhh-
Confidence 8888888888888765667665 46677888888888877 677777777888888888888775444443333
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
. .|-.|||++|++...+|.+..+..|+.|+|++|.+...-...+..+++|++|.+++.+-+-
T Consensus 150 ----t-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------- 211 (1255)
T KOG0444|consen 150 ----T-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------- 211 (1255)
T ss_pred ----H-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------
Confidence 3 3777888888777666667777777777777776653322333444555555555544221
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 341 (622)
.. +|..+..+.+|..+|++.|.+. ..|+.+..+++
T Consensus 212 ~N--------------------------------------------~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~ 246 (1255)
T KOG0444|consen 212 DN--------------------------------------------IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN 246 (1255)
T ss_pred hc--------------------------------------------CCCchhhhhhhhhccccccCCC-cchHHHhhhhh
Confidence 12 3333444444444444444444 44444444444
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCccc-CChhhhHhHhhhcCCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-IPYQFENEYKSTLGLV 420 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~l~~L 420 (622)
|+.|+||+|+|+ .+........+|++|+++.|++ ..+|+.+. .++.|+.|.+.+|+++-. +|..++ .+.+|
T Consensus 247 LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL-t~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIG-----KL~~L 318 (1255)
T KOG0444|consen 247 LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL-TVLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIG-----KLIQL 318 (1255)
T ss_pred hheeccCcCcee-eeeccHHHHhhhhhhccccchh-ccchHHHh-hhHHHHHHHhccCcccccCCccchh-----hhhhh
Confidence 555555555444 2333333344455555555554 44454444 355555555555544421 233332 34455
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+++..++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.||+..|+-.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 55555555555 66666777777777777777665 56666666777777777766544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-34 Score=283.74 Aligned_cols=363 Identities=25% Similarity=0.303 Sum_probs=306.9
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+-.+-+|+++|.+++...|+.. ..+++++.|.|...++. .+|+.++.+.+|++|.+++|++.... ..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v------~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GE----- 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV------EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GE----- 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH------HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hh-----
Confidence 5577789999999876778776 67889999999999888 78999999999999999999887433 33
Q ss_pred ccccCCCcCEEEccCCcccc--cCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCC
Q 037539 182 FGCVVNSLEGLYLRWNDFTG--PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIG 259 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 259 (622)
++.++. |+.+.+.+|++.. .++++..+..|..|||++|++. ..|..+..-+++-.|+|++|+|.
T Consensus 74 Ls~Lp~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie------------ 139 (1255)
T KOG0444|consen 74 LSDLPR-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE------------ 139 (1255)
T ss_pred hccchh-hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc------------
Confidence 455566 9999999987753 4444888999999999999998 67888888899999999999987
Q ss_pred cccCCchhHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCccc-ccCCC
Q 037539 260 ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS-GKIPD 334 (622)
Q Consensus 260 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~ 334 (622)
.||..++-.+..|-.||+++|++....|.+ .|+.|+|++|.+...-...+..+++|+.|.+++.+-+ ..+|.
T Consensus 140 ---tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 140 ---TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ---cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 778888877778889999999998766664 7899999999887655566667888899999987544 56788
Q ss_pred ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
++..+.+|..+++|.|.+. ..|+.+.++++|+.|+|++|+| +++..... .-.+|++|+++.|+++ ..|..+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i-teL~~~~~-~W~~lEtLNlSrNQLt-~LP~avc---- 288 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI-TELNMTEG-EWENLETLNLSRNQLT-VLPDAVC---- 288 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce-eeeeccHH-HHhhhhhhccccchhc-cchHHHh----
Confidence 8999999999999999998 8999999999999999999999 66655554 3578999999999998 5565555
Q ss_pred hhcCCccEEECCCCcCCc-cchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 037539 415 STLGLVRCLDLSSNKLDG-AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 493 (622)
.++.|+.|.+.+|+++- -+|+.++.+..|+.+..++|++. ..|+++..+..|+.|.|++|++. .+|+++.-++.|+
T Consensus 289 -KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 289 -KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred -hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 78999999999999853 57899999999999999999997 88999999999999999999998 7899999999999
Q ss_pred EEECcCCcCccc
Q 037539 494 VLDLSYNNLSGK 505 (622)
Q Consensus 494 ~L~ls~N~l~~~ 505 (622)
.||+..|+-.-.
T Consensus 366 vLDlreNpnLVM 377 (1255)
T KOG0444|consen 366 VLDLRENPNLVM 377 (1255)
T ss_pred eeeccCCcCccC
Confidence 999999986533
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-32 Score=279.74 Aligned_cols=416 Identities=25% Similarity=0.242 Sum_probs=264.9
Q ss_pred CCcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 34 RLQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
+|+.||+++|.++.. ++|+.|+++.|.+...|. ...++.+|+++.|.+|.+... | .++..+ .+|++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~---s~~~~~~l~~lnL~~n~l~~l-P--~~~~~l-knl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPS---SCSNMRNLQYLNLKNNRLQSL-P--ASISEL-KNLQY 118 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCch---hhhhhhcchhheeccchhhcC-c--hhHHhh-hcccc
Confidence 399999999998665 899999999999998876 899999999999999987654 5 578888 99999
Q ss_pred EEccCCCCCCCCCchhhhccc--------------ccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc
Q 037539 107 LDLSDNNLPSSSVYPWLLNLK--------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ 172 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~--------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 172 (622)
||+|+|.+. .+|..+..+. .++... ++++++..|.+.+.++..+..+++ .|+|++|.+...
T Consensus 119 LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 119 LDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred cccchhccC--CCchhHHhhhHHHHHhhhcchhhhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 999999997 4555442221 122222 556666666666666655555555 577777766521
Q ss_pred CchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 173 YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 173 ~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
. +..+.. |+.|....|++.... -.-++|+.|+.+.|.++...+ .+ --.+|++++++.|+++
T Consensus 194 d--------ls~~~~-l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~-~p-~p~nl~~~dis~n~l~----- 254 (1081)
T KOG0618|consen 194 D--------LSNLAN-LEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDV-HP-VPLNLQYLDISHNNLS----- 254 (1081)
T ss_pred h--------hhhccc-hhhhhhhhcccceEE---ecCcchheeeeccCcceeecc-cc-ccccceeeecchhhhh-----
Confidence 1 222333 555555555443211 122556666666666663222 11 1246777777777766
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCC----CcccEEeCCCCcCccccCccccCCCCCCEEEccCCcc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD----LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i 328 (622)
.+|+|+..+ .+|+.++..+|.++..... .+++.+++..|.+. .+|....+++.|++|+|..|++
T Consensus 255 ----------~lp~wi~~~-~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 255 ----------NLPEWIGAC-ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred ----------cchHHHHhc-ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence 566666554 4777777777777432211 26666666666665 4556666777788888888877
Q ss_pred cccCCCccCCCCC-ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh
Q 037539 329 SGKIPDSMGFLNN-IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY 407 (622)
Q Consensus 329 ~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 407 (622)
....+..+..+.. |+.|+.+.|++.......=..++.|+.|.+.+|.+++..-..+. +.+.|++|+|++|++...+..
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHH
Confidence 7433333333333 66666677766532221222345677777777777444322222 567777777777777633333
Q ss_pred hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 037539 408 QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLS 487 (622)
Q Consensus 408 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 487 (622)
.+. +++.|++|+|+||+++ .+|+.+..++.|++|...+|.+. ..| .+.++++|+.+|++.|.++...-..-.
T Consensus 402 ~~~-----kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 402 KLR-----KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred HHh-----chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333 6777777777777777 66677777777777777777776 555 667777777777777777654322222
Q ss_pred CCCCCCEEECcCCc
Q 037539 488 QLSGLGVLDLSYNN 501 (622)
Q Consensus 488 ~l~~L~~L~ls~N~ 501 (622)
..+.|++||++||.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 33677777777776
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=246.96 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=198.4
Q ss_pred hhcCCCCCCEEEccCCCC------CCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecc
Q 037539 70 VVAKLHSLKSLVLFSCAL------PPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDS 143 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n 143 (622)
+|.++++|+.|.+..+.. ....| ..+..++.+|+.|++.++.++ .+|..+ ...+|++|++++|
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp--~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-------~~~~L~~L~L~~s 621 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLP--EGFDYLPPKLRLLRWDKYPLR--CMPSNF-------RPENLVKLQMQGS 621 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecC--cchhhcCcccEEEEecCCCCC--CCCCcC-------CccCCcEEECcCc
Confidence 566666666666654432 11223 344455455666666666654 344433 3456666666666
Q ss_pred cCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccC
Q 037539 144 ELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCL 222 (622)
Q Consensus 144 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l 222 (622)
.+. .++..+..+++|+.|+++++......|. ++.+++ |++|++++|.....+|. ++.+++|+.|++++|..
T Consensus 622 ~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~------ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 622 KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD------LSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccc-ccccccccCCCCCEEECCCCCCcCcCCc------cccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 665 4455555666666666665543333342 233333 66666666554444444 55566666666665543
Q ss_pred CccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCC
Q 037539 223 NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSN 302 (622)
Q Consensus 223 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n 302 (622)
-..+|..+ ++++|+.|++++|.... .+|. ..++|+.|++++|.+.
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~--------------~~p~----~~~nL~~L~L~~n~i~---------------- 738 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLK--------------SFPD----ISTNISWLDLDETAIE---------------- 738 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCcc--------------cccc----ccCCcCeeecCCCccc----------------
Confidence 33344333 45555555555553210 1121 1134444444444433
Q ss_pred cCccccCccccCCCCCCEEEccCCccc-------ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNRLS-------GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
.+|..+ .+++|++|++.++... ...+..+...++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 739 ----~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 739 ----EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ----cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 233322 4556666666553321 1111122335678888888887666778888888888888888876
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
..+.+|..+ .+++|+.|++++|.....+|. ...+|+.|+|++|.++ .+|..+..+++|++|++++|+-.
T Consensus 814 ~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 814 NLETLPTGI--NLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CcCeeCCCC--CccccCEEECCCCCccccccc--------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 557777665 478888888888765444442 2457888888888887 67778888888888888886543
Q ss_pred CCCccccCCCCCCCEEeCCCCc
Q 037539 456 GPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
..+|..+..+++|+.+++++|.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccCcccccccCCCeeecCCCc
Confidence 3566677778888888888875
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=235.07 Aligned_cols=340 Identities=22% Similarity=0.210 Sum_probs=227.6
Q ss_pred hhccccCcccEEEccCCCCCC-----CCCchhhhcccccCCC-ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCC
Q 037539 96 WHFNLSTSIETLDLSDNNLPS-----SSVYPWLLNLKAFQHM-VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKL 169 (622)
Q Consensus 96 ~l~~l~~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 169 (622)
++..+ ++|+.|.+..+.... ..+|..+ ..+ ++|+.|.+.++.+. .+|..| ...+|+.|++++|++
T Consensus 553 aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~------~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 553 AFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGF------DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred HHhcC-ccccEEEEecccccccccceeecCcch------hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc
Confidence 45555 667777665543211 0222222 222 35666777666665 455555 346667777776666
Q ss_pred CCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCC-Ccc
Q 037539 170 SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS-LRA 248 (622)
Q Consensus 170 ~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~ 248 (622)
.. .+.. +..+++ |+.|++++|.....+|.+..+++|+.|++++|.....+|..+..+++|+.|++++|. ++
T Consensus 624 ~~-L~~~-----~~~l~~-Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~- 695 (1153)
T PLN03210 624 EK-LWDG-----VHSLTG-LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE- 695 (1153)
T ss_pred cc-cccc-----cccCCC-CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-
Confidence 53 3333 223333 677777666544555556666667777776665545566666666666666666653 22
Q ss_pred cccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcc
Q 037539 249 ISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328 (622)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i 328 (622)
.+|..+ .+++|+.|++++|... ...|. ...+|+.|++++|.+
T Consensus 696 --------------~Lp~~i--~l~sL~~L~Lsgc~~L-------------------~~~p~---~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 696 --------------ILPTGI--NLKSLYRLNLSGCSRL-------------------KSFPD---ISTNISWLDLDETAI 737 (1153)
T ss_pred --------------ccCCcC--CCCCCCEEeCCCCCCc-------------------ccccc---ccCCcCeeecCCCcc
Confidence 333322 2345555555555332 23332 235789999999998
Q ss_pred cccCCCccCCCCCccEEeeeCCcCC-------CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcC
Q 037539 329 SGKIPDSMGFLNNIWTLNLHNNRLT-------GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
. .+|..+ .+++|++|.+.++... ...+..+...++|+.|++++|...+.+|..+. ++++|+.|++++|..
T Consensus 738 ~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 738 E-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCIN 814 (1153)
T ss_pred c-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCC
Confidence 7 556554 5789999998875432 11222333457999999999987788998877 799999999999876
Q ss_pred cccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
.+.+|... .+++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|..+..+++|+.|+|++|+-...
T Consensus 815 L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 815 LETLPTGI------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cCeeCCCC------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 55666554 5899999999998765555543 468999999999998 6888999999999999999765556
Q ss_pred CCccccCCCCCCEEECcCCcCc
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|..+..+++|+.+++++|.-.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCcccccccCCCeeecCCCccc
Confidence 7778889999999999999643
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-25 Score=212.54 Aligned_cols=381 Identities=25% Similarity=0.249 Sum_probs=231.7
Q ss_pred cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeec-CCCCCcCchhh
Q 037539 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSY-NKLSGQYSQVI 177 (622)
Q Consensus 99 ~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~ 177 (622)
++|+.-..++|..|+|+. +|+ .+|+.+++|+.|||++|.|+.+.|++|.++..|..|-+.+ |+|++.....|
T Consensus 64 ~LP~~tveirLdqN~I~~--iP~-----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISS--IPP-----GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCCCcceEEEeccCCccc--CCh-----hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 666888899999999984 444 4578999999999999999999999999999988887776 88987777775
Q ss_pred hhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccC
Q 037539 178 QNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTS 256 (622)
Q Consensus 178 ~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 256 (622)
..+. +|+.|.+.-|++.-.... |..+++|..|.+.+|.+..+....|..+..++++.+..|.+.......++.
T Consensus 137 ~gL~------slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 137 GGLS------SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhHH------HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 5554 599999998888866666 899999999999999988665558888999999998888743322111000
Q ss_pred CCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEE---eCCCCcCcccc-CccccCCCCCCEEEccCCccc
Q 037539 257 PIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFD---DLSSNLLSGGL-PDCWLHFDRLFILNLANNRLS 329 (622)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L---~ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~ 329 (622)
... ...|..+.. ........+.+.++...-+.- .++.+ -.+.+...+.. ..+|..+++|++|++++|+++
T Consensus 211 ~~~--a~~~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 211 DDL--AMNPIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hHH--hhchhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 000 000000000 000111111111111100000 11111 11112222222 246778888888888888888
Q ss_pred ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhh
Q 037539 330 GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF 409 (622)
Q Consensus 330 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 409 (622)
.+-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+ .+....|+.+.+|.+|++-.|++....-..+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHH
Confidence 777778888888888888888887666667888888888888888884 4444445567788888887777653332222
Q ss_pred hHhHhh-----------hcCCccEEECCCCcCCc---cchHHhh---------cccc----------------------c
Q 037539 410 ENEYKS-----------TLGLVRCLDLSSNKLDG---AIPEEIM---------DLVG----------------------L 444 (622)
Q Consensus 410 ~~~~~~-----------~l~~L~~L~L~~n~l~~---~~~~~~~---------~l~~----------------------L 444 (622)
-..+.. ....++.+.+++..+.. ..|+..+ .++- -
T Consensus 367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~ 446 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDV 446 (498)
T ss_pred HHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchh
Confidence 211111 23345566666554431 1111110 1111 2
Q ss_pred ceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 445 IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
.+|++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++.+|.+|-+++|
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34556666665 34433 34555 6666666665444445556666666655554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-24 Score=201.28 Aligned_cols=282 Identities=22% Similarity=0.174 Sum_probs=170.4
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccC-CCCcccccccccCCCCcccCCch
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG-NSLRAISLCILTSPIGISDSIPD 266 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~~~~~ 266 (622)
-.+++|..|+|+..++. |+.+++|+.|||+.|+|+.+.|.+|.++++|.+|-+.+ |+|+ .+|+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---------------~l~k 133 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---------------DLPK 133 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh---------------hhhh
Confidence 44444555555444433 55555555555555555555555555555554444443 4444 3444
Q ss_pred hHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEe
Q 037539 267 WFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346 (622)
Q Consensus 267 ~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 346 (622)
..+..+..++.|.+.-|++. -...+.|..++++..|.+..|.+....-..|..+..++++.
T Consensus 134 ~~F~gL~slqrLllNan~i~-------------------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHIN-------------------CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hHhhhHHHHHHHhcChhhhc-------------------chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 44444444444444443332 12233444444455555555544422222444455555555
Q ss_pred eeCCcC------------CCCCCccccCCCCccEEEccCCcccccCchhHH-hhcccccEeecCCCcCcccCChhhhHhH
Q 037539 347 LHNNRL------------TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG-ESLQNLIVLSLKSNKFHGNIPYQFENEY 413 (622)
Q Consensus 347 Ls~n~i------------~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 413 (622)
+..|.+ ....|..+++.+...-..+.+.++ ..++..-+ ....++..=-.+.+...+..|..-
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri-~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c---- 269 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI-NQEDARKFLCSLESLPSRLSSEDFPDSICPAKC---- 269 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh-cccchhhhhhhHHhHHHhhccccCcCCcChHHH----
Confidence 544441 123344455555555566666666 44444333 122233332334444444444332
Q ss_pred hhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 037539 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493 (622)
Q Consensus 414 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 493 (622)
++.+++|+.|+|++|+++++-+.+|.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 34899999999999999988899999999999999999999876777899999999999999999999999999999999
Q ss_pred EEECcCCcCcccCCCC
Q 037539 494 VLDLSYNNLSGKIPSG 509 (622)
Q Consensus 494 ~L~ls~N~l~~~~p~~ 509 (622)
+|++-.|++.|.+--.
T Consensus 350 ~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLA 365 (498)
T ss_pred eeehccCcccCccchH
Confidence 9999999998876543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-21 Score=205.21 Aligned_cols=199 Identities=29% Similarity=0.311 Sum_probs=123.4
Q ss_pred CCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 274 KLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+|+.|++++|.+.. +|.. .|+.|++++|.+.. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.
T Consensus 263 sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 263 GLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred ccceeeccCCchhh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence 44444444444432 1211 34445555555442 232 23567777777777774 3332 2356777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
++ .+|.. ..+|++|++++|++ ..+|.. .++|+.|++++|++.. +|. ....|+.|++++|+++
T Consensus 334 L~-~LP~l---p~~Lq~LdLS~N~L-s~LP~l----p~~L~~L~Ls~N~L~~-LP~--------l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 334 LT-SLPTL---PSGLQELSVSDNQL-ASLPTL----PSELYKLWAYNNRLTS-LPA--------LPSGLKELIVSGNRLT 395 (788)
T ss_pred cc-ccccc---ccccceEecCCCcc-CCCCCC----Ccccceehhhcccccc-Ccc--------cccccceEEecCCccc
Confidence 76 34431 24677888888877 456542 3567777788777774 332 2346778888888877
Q ss_pred ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 432 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 396 -~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 396 -SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 34432 3567788888888874 5543 346777888888887 6777788888888888888888766553
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-21 Score=204.66 Aligned_cols=264 Identities=27% Similarity=0.318 Sum_probs=129.4
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. .+ +|++|++++|+++.. |.+ .++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l--------p~-~Lk~LdLs~N~LtsL-P~l--p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL--------PP-ELRTLEVSGNQLTSL-PVL--PPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC--------CC-CCcEEEecCCccCcc-cCc--ccccc
Confidence 3445666666665 4454443 256666666666553 2211 11 366666666655532 221 24555
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
.|++++|.++. +|.. .++|+.|++++|+++ .+|. .+++|+.|++++|++.+. |..
T Consensus 266 ~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt---------------~LP~----~p~~L~~LdLS~N~L~~L-p~l- 320 (788)
T PRK15387 266 ELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT---------------SLPV----LPPGLQELSVSDNQLASL-PAL- 320 (788)
T ss_pred eeeccCCchhh-hhhc---hhhcCEEECcCCccc---------------cccc----cccccceeECCCCccccC-CCC-
Confidence 66666665552 2221 234555666666554 2222 123555555555555421 111
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
...|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++
T Consensus 321 ---------------------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~ 371 (788)
T PRK15387 321 ---------------------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYN 371 (788)
T ss_pred ---------------------cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhc
Confidence 1234445555555542 2221 134555555555555 23321 23455555555
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..+|.. ..+|+.|++++|++++ +|. ..++|+.|++++|.++ .+|.. ..+|+.|++++|+
T Consensus 372 N~L-~~LP~l----~~~L~~LdLs~N~Lt~-LP~--------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 372 NRL-TSLPAL----PSGLKELIVSGNRLTS-LPV--------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred ccc-ccCccc----ccccceEEecCCcccC-CCC--------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCc
Confidence 555 334432 2345556666665553 221 1234566666666665 23432 2345566666666
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccc
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 486 (622)
++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 434 Lt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 434 LT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 65 456666666666666666666665555444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-19 Score=190.76 Aligned_cols=180 Identities=28% Similarity=0.395 Sum_probs=92.2
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
.++...|+++++.++.....+. +.|+.|++++|.++. +|..+. ++|++|++++|+++ .+|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt---------------sLP 236 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT---------------SIP 236 (754)
T ss_pred ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc---------------cCC
Confidence 3347888888887775332243 578888888888874 454443 57888888888876 445
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCC-C--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPD-L--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 342 (622)
..+. ++|+.|++++|.+. .+|. + .|+.|++++|.+.. +|..+. ++|+.|++++|+++. +|..+. ++|
T Consensus 237 ~~l~---~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP---DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGI 306 (754)
T ss_pred hhhh---ccccEEECcCCccC-cCChhHhCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhH
Confidence 4332 36777888777776 2232 1 44445555444442 232221 244444444444442 222221 234
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 402 (622)
+.|++++|.++. +|..+ .++|+.|++++|.+ ..+|..+ .++|+.|++++|+++
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L-t~LP~~l---~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 307 THLNVQSNSLTA-LPETL--PPGLKTLEAGENAL-TSLPASL---PPELQVLDVSKNQIT 359 (754)
T ss_pred HHHHhcCCcccc-CCccc--cccceeccccCCcc-ccCChhh---cCcccEEECCCCCCC
Confidence 444444444442 22211 13444444444444 2333322 134444444444443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=188.15 Aligned_cols=143 Identities=22% Similarity=0.377 Sum_probs=81.7
Q ss_pred CCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 274 KLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+|+.|++++|++.+..+.+ .++.|++++|.+.. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ 357 (754)
T ss_pred CCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC
Confidence 4555555555544221111 34445555555442 23222 2467777777777763 44444 2577777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
++ .+|..+ .++|++|++++|.+ ..+|..+. ..|+.|++++|++. .+|..+. .+...++.+..|++.+|++.
T Consensus 358 L~-~LP~~l--p~~L~~LdLs~N~L-t~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~-~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 358 IT-VLPETL--PPTITTLDVSRNAL-TNLPENLP---AALQIMQASRNNLV-RLPESLP-HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CC-cCChhh--cCCcCEEECCCCcC-CCCCHhHH---HHHHHHhhccCCcc-cCchhHH-HHhhcCCCccEEEeeCCCcc
Confidence 76 455444 25777777777777 46666543 35777777777776 3443332 12224566777777777775
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=184.25 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=28.6
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC----CchhhcCCccCcEeEeecCCCC
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG----IPKFFGNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~ 170 (622)
.|+|..+.+++...+.. +..+.+|+.|+++++.++.. ++..+...+.+++|+++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~------~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATEL------LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHH------HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 35555555553122221 23444566666666655432 2333444555666666555544
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-19 Score=181.35 Aligned_cols=185 Identities=28% Similarity=0.307 Sum_probs=99.9
Q ss_pred CCCEEEccCCccccc----CCCccCCC-CCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHh-
Q 037539 317 RLFILNLANNRLSGK----IPDSMGFL-NNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE- 386 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~- 386 (622)
+|++|++++|++++. +...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 355555555555421 11223334 5666666666665521 2234455566777777776664322122211
Q ss_pred --hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhc-----ccccceeecCCccccCC--
Q 037539 387 --SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-----LVGLIALNLSRNHLTGP-- 457 (622)
Q Consensus 387 --~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~-- 457 (622)
.+++|+.|++++|.+.+.....+.. ....+++|++|++++|.+++.....+.. .+.|+.|++++|.+++.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 2346777777777665433332221 2225667777777777776533333322 25777777777776522
Q ss_pred --CccccCCCCCCCEEeCCCCccCcc----CCccccCC-CCCCEEECcCCcC
Q 037539 458 --ITPKIGELTSLDFLDLSRNLFSGS----IPCSLSQL-SGLGVLDLSYNNL 502 (622)
Q Consensus 458 --~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~ls~N~l 502 (622)
....+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 223445567777777777777743 33334444 5677777777764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-17 Score=140.69 Aligned_cols=156 Identities=31% Similarity=0.534 Sum_probs=85.9
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.+...+.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++ ...|.+++ .+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFG-SFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccC-CCchhhh
Confidence 4455556666666666 44445556666666666666665 5555566666666666666665 45555554 4555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|++..|++... .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+
T Consensus 107 ldltynnl~e~----------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 107 LDLTYNNLNEN----------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSL 157 (264)
T ss_pred hhccccccccc----------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEee
Confidence 55555554421 33444445555555555555554 44444555555555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|.+. .+|..++.+..|++|.+.+|+++
T Consensus 158 rdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 158 RDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 555554 44555555555555555555555
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-17 Score=141.55 Aligned_cols=152 Identities=33% Similarity=0.445 Sum_probs=116.5
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|.+|+|.++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 6888999999998 56777899999999999999999 77888999999999999999998 899999999999999999
Q ss_pred CCcccc-cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFG-EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+.. .+|..+| .+..|+.|++++|.+. .+|...+ .+++|+.|.+++|.+. .+|..++.++.|++|.+.+
T Consensus 111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg-----~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVG-----KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhh-----hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 998854 3676666 6778888888877776 3333333 4555555555555554 4455555555555555555
Q ss_pred cccc
Q 037539 452 NHLT 455 (622)
Q Consensus 452 n~l~ 455 (622)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=149.71 Aligned_cols=117 Identities=42% Similarity=0.692 Sum_probs=104.7
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECc
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 498 (622)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCC--cCCccCcccccCCcCCCCCCCCCCC
Q 037539 499 YNNLSGKIPSGT--QLQSFNASVYAGNLELCGLPLANMC 535 (622)
Q Consensus 499 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~C 535 (622)
+|++++.+|... .........+.+|+.+|+.|....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999999752 1233456678999999987765556
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-14 Score=132.40 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCCEEEccCCcccccC----CCccCCCCCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHh
Q 037539 315 FDRLFILNLANNRLSGKI----PDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
-+.|+.+...+|++.... ...|...+.|+.+.+++|.|... ....|..++.|++|||.+|-++......+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 446777777777765332 23456667888888888877532 2246678888888888888775443333322
Q ss_pred ---hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccc
Q 037539 387 ---SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 387 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 454 (622)
.++.|+.|++++|.+.......+...+....|.|++|.+.+|.++.. +..++...+.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35678888888888887777777777777778888888888877632 223344566677777777766
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-13 Score=125.11 Aligned_cols=241 Identities=21% Similarity=0.177 Sum_probs=165.6
Q ss_pred cccCcCCcEEeCCCCCCCC------------CCCccEEEcCCcccCCC-Cc-------chHhhcCCCCCCEEEccCCCCC
Q 037539 29 EVNIERLQELVLGLGKFFE------------TSNINTFFLNTVSVTKS-SD-------WFQVVAKLHSLKSLVLFSCALP 88 (622)
Q Consensus 29 ~~~l~~L~~L~L~~n~i~~------------~~~L~~L~Ls~n~l~~~-~~-------~~~~l~~l~~L~~L~Ls~n~l~ 88 (622)
...+..+++++|++|.|.. .++|+..++|+--.... .. +.+++..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3367889999999998832 28888888887532222 22 2245667889999999999886
Q ss_pred CCCCCcchh----ccccCcccEEEccCCCCCCCCCchhhh-------cccccCCCccccEEEeecccCCCCC----chhh
Q 037539 89 PVNPSFIWH----FNLSTSIETLDLSDNNLPSSSVYPWLL-------NLKAFQHMVSLKSLYLSDSELEGGI----PKFF 153 (622)
Q Consensus 89 ~~~~~~~~l----~~l~~~L~~L~Ls~n~l~~~~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l 153 (622)
...+ ..+ ..+ ..|++|.|.+|.+.. .--..++ .......-+.|+++..++|++.+.. ...|
T Consensus 106 ~~g~--~~l~~ll~s~-~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 106 PKGI--RGLEELLSSC-TDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccch--HHHHHHHHhc-cCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 5544 222 344 889999999998863 1111110 1224566788999999999987533 3456
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCC----C-CCCCCCCCEEEeecccCCccCcc
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP----H-LGGFSSLEAWSLDVNCLNGTIDK 228 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~----~-l~~l~~L~~L~L~~n~l~~~~~~ 228 (622)
...+.|+.+.++.|.|.......+... +..++. |+.|||..|.++.... . +..+++|++|++++|.+......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~ea-l~~~~~-LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEA-LEHCPH-LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHH-HHhCCc-ceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 778899999999998865443333322 677777 9999999998875322 2 77888999999999988765444
Q ss_pred cc-----CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCc
Q 037539 229 SL-----SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286 (622)
Q Consensus 229 ~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 286 (622)
+| ...|.|++|.+.+|.|+..... .+...+.. .+.|+.|++++|.+.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhc-chhhHHhcCCccccc
Confidence 33 2478999999999988754311 22223333 468999999999984
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-12 Score=120.06 Aligned_cols=132 Identities=28% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcc
Q 037539 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDL 441 (622)
Q Consensus 362 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 441 (622)
....|+++|+++|.| ..+...+- -.|.++.|++++|.+..... +. .+++|+.|||++|.++ .+..+-..+
T Consensus 282 TWq~LtelDLS~N~I-~~iDESvK-L~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI-TQIDESVK-LAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccch-hhhhhhhh-hccceeEEeccccceeeehh--hh-----hcccceEeecccchhH-hhhhhHhhh
Confidence 446799999999999 77777765 57999999999999884433 22 6899999999999998 555566678
Q ss_pred cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 442 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
.+.++|.|++|.+.+ ..+++.+.+|..||+++|+|... .-..++++|.|+.+.+.+|++.+.
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 899999999999864 56788899999999999999743 234689999999999999999854
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=126.43 Aligned_cols=183 Identities=38% Similarity=0.553 Sum_probs=141.1
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCC-CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLN-NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
...+.++.|++.+|.++ .++....... +|+.|++++|.+. .++..+..+++|+.|++++|++ ..+|.... ..++|
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~-~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLS-NLSNL 188 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh-hhhhhhhh-hhhhh
Confidence 34467888888888888 4444455553 8999999999887 5556778889999999999998 67776654 47889
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.|++++|++.... .... .+..|+++.+++|.+. ..+..+..+..+..+.+.+|++. ..+..++.+++++.|
T Consensus 189 ~~L~ls~N~i~~l~-~~~~-----~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 189 NNLDLSGNKISDLP-PEIE-----LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred hheeccCCccccCc-hhhh-----hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence 99999999888433 3322 3556889999999654 56667888888998999999887 346778888889999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++++|.++...+ +..+..++.|++++|.+....|..
T Consensus 261 ~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 261 DLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 999999985443 788889999999999988666654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-12 Score=123.66 Aligned_cols=211 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|+.+.|.++.+...+.- .....|++++.||||.|-+....+.......+ ++|+.|+++.|++.. ...+..
T Consensus 121 kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~-~~~s~~----- 192 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNRLSN-FISSNT----- 192 (505)
T ss_pred HhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhcccccccccC-Cccccc-----
Confidence 5566666666655544100 14556666666666666555443321223344 666666666666643 221111
Q ss_pred cCCCccccEEEeecccCCCCC-chhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccC--CC
Q 037539 129 FQHMVSLKSLYLSDSELEGGI-PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPI--PH 205 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~--~~ 205 (622)
-..+++|+.|.++.|+++... ...+..+++|+.|++..|......... ..-+. .|++|||++|++.... +.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~i~~-~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-----TKILQ-TLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-----hhhhh-HHhhccccCCcccccccccc
Confidence 024566666777777666322 122345667777777776422111111 11122 2777777777665433 22
Q ss_pred CCCCCCCCEEEeecccCCccCcccc------CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEE
Q 037539 206 LGGFSSLEAWSLDVNCLNGTIDKSL------SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 206 l~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
.+.++.|+.|+++.+.+..+..... ..+++|++|++..|++.... ++ ..+ ...++|+.|.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~------------sl-~~l-~~l~nlk~l~ 332 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR------------SL-NHL-RTLENLKHLR 332 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc------------cc-chh-hccchhhhhh
Confidence 6667777777777776654322222 34567777777777764432 11 111 1234666666
Q ss_pred ccCCcCcc
Q 037539 280 LSNNHFRG 287 (622)
Q Consensus 280 l~~n~l~~ 287 (622)
+..|.+..
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 66666654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-13 Score=132.14 Aligned_cols=169 Identities=30% Similarity=0.456 Sum_probs=80.1
Q ss_pred EEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCC
Q 037539 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399 (622)
Q Consensus 320 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n 399 (622)
..|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|+.||++.|++ ...|..++ .--|+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCcceeEEEecC
Confidence 3444555444 44444444444555555555444 4444455555555555555554 44444444 123455555555
Q ss_pred cCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 400 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+++ .+|..+. ..+.|..||.+.|.+. .+|..++.+.+|+.|++..|++. ..|+.+..+ .|..||+|.|+++
T Consensus 154 kl~-~lp~~ig-----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 154 KLT-SLPEEIG-----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred ccc-cCCcccc-----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 544 2333332 3444455555555554 44444555555555555555554 233333322 2445555555554
Q ss_pred ccCCccccCCCCCCEEECcCCcCc
Q 037539 480 GSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 480 ~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|-.|..+..|++|.|.+|++.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC
Confidence 44445555555555555555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=125.80 Aligned_cols=114 Identities=30% Similarity=0.461 Sum_probs=104.1
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
.++.|+|++|.+.+.+|..+. .+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-----~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-----CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 478899999999999998776 799999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCccCCccccCC-CCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~ 508 (622)
.|+|++|.+++.+|..+... ..+..+++.+|+..|..|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999988764 4678999999998876653
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-11 Score=114.40 Aligned_cols=131 Identities=30% Similarity=0.472 Sum_probs=68.8
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++.|+++||++|.|+ .+.++..-.|.++.|++|+|.+... ..+..+++|+.||+++|.+ ..+..|-. .
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~L-s~~~Gwh~-K------ 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLL-AECVGWHL-K------ 350 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchh-HhhhhhHh-h------
Confidence 3444555555555555 3333444455555555555555422 1244555555555555554 33322222 3
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC-CccccCCCCCCCEEe
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP-ITPKIGELTSLDFLD 472 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 472 (622)
+-+.+.|.|++|.+. ....++.+-+|..||+++|++... ....++++|-|+++.
T Consensus 351 -----------------------LGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 351 -----------------------LGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred -----------------------hcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 444445555555443 223455666666677777766522 124567777777777
Q ss_pred CCCCccCc
Q 037539 473 LSRNLFSG 480 (622)
Q Consensus 473 Ls~n~l~~ 480 (622)
|.+|++.+
T Consensus 406 L~~NPl~~ 413 (490)
T KOG1259|consen 406 LTGNPLAG 413 (490)
T ss_pred hcCCCccc
Confidence 77777763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-12 Score=122.03 Aligned_cols=208 Identities=24% Similarity=0.201 Sum_probs=139.7
Q ss_pred cccEEeCCCCcCccccC-ccccCCCCCCEEEccCCccccc--CCCccCCCCCccEEeeeCCcCCCCCCc-cccCCCCccE
Q 037539 293 SLRFDDLSSNLLSGGLP-DCWLHFDRLFILNLANNRLSGK--IPDSMGFLNNIWTLNLHNNRLTGKLPS-PLRNFSQLRV 368 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~ 368 (622)
+|+.+.+.++.+..... .....|++++.|||+.|-+... +......+++|+.|+++.|++.....+ .-..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 57778888777653221 3566788999999999876532 223456789999999999987632221 1125678889
Q ss_pred EEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc-hHHhhccccccee
Q 037539 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI-PEEIMDLVGLIAL 447 (622)
Q Consensus 369 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 447 (622)
|.++.|.++-.--.++...+|+|+.|++..|.....-..... .+..|++|||++|++.+.. ....+.++.|+.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----hhhHHhhccccCCcccccccccccccccchhhh
Confidence 999999885443345555789999999998853222221222 4677889999998886322 2356788888899
Q ss_pred ecCCccccCCC-ccc-----cCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 448 NLSRNHLTGPI-TPK-----IGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 448 ~L~~n~l~~~~-~~~-----l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+++.|.+...- |+. ...+++|++|+++.|+|..- .-..+..+++|+.|.+..|.+..+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99988876432 222 34578899999999988521 122345667788888888888643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-11 Score=108.47 Aligned_cols=84 Identities=29% Similarity=0.365 Sum_probs=16.7
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhc-cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 150 (622)
.+..++++|+|.+|.|+... .+. .+ .+|+.|++++|.|+.+ ..+..+++|++|++++|+|+. +.
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie----~L~~~l-~~L~~L~Ls~N~I~~l---------~~l~~L~~L~~L~L~~N~I~~-i~ 80 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE----NLGATL-DKLEVLDLSNNQITKL---------EGLPGLPRLKTLDLSNNRISS-IS 80 (175)
T ss_dssp ------------------------S--TT--TT--EEE-TTS--S-----------TT----TT--EEE--SS---S--C
T ss_pred cccccccccccccccccccc----chhhhh-cCCCEEECCCCCCccc---------cCccChhhhhhcccCCCCCCc-cc
Confidence 33445555666666555431 233 23 5555566666655431 123445555555555555553 22
Q ss_pred hhh-cCCccCcEeEeecCCCC
Q 037539 151 KFF-GNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 151 ~~l-~~l~~L~~L~L~~n~i~ 170 (622)
+.+ ..+++|++|++++|+|.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---
T ss_pred cchHHhCCcCCEEECcCCcCC
Confidence 222 23555555555555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-11 Score=122.55 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=25.7
Q ss_pred cCEEEccCCcccccCCCCCCCC-CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCc
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFS-SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
++.|++.+|.++...+....+. +|+.|++++|.+. .++..+..+++|+.|++++|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence 5555555555443333333332 4555555554444 22233444444444444444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=102.95 Aligned_cols=127 Identities=31% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCCCCEEEccCCcccccCCCccC-CCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMG-FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
+...+++|+|++|.|+.. +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|.| ..+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC-CccccchHHhCCcCC
Confidence 444677888888877743 2344 467788888888888743 3567778888888888887 555544444577888
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc---hHHhhcccccceeec
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALNL 449 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 449 (622)
.|++++|+|...... .....+++|+.|+|.+|++.... ...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCC----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHh----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888877642211 11125677777777777765321 223455666666653
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-12 Score=129.00 Aligned_cols=189 Identities=28% Similarity=0.400 Sum_probs=145.9
Q ss_pred CCcEEEccCCcCcccCCCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeC
Q 037539 274 KLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHN 349 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 349 (622)
--...+++.|++.....+. .|+.+.+..|.+. .+|.+++.+..|+++||+.|+++ ..|..++.++ |+.|.+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 3456688888887332222 6788888888876 67888888999999999999988 6677777666 89999999
Q ss_pred CcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCc
Q 037539 350 NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK 429 (622)
Q Consensus 350 n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 429 (622)
|+++ .+|..++..+.|..||.+.|.+ ..+|..+. ++.+|+.|+++.|.+... |..+. .-.|..||+++|+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~-~l~slr~l~vrRn~l~~l-p~El~------~LpLi~lDfScNk 222 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLG-YLTSLRDLNVRRNHLEDL-PEELC------SLPLIRLDFSCNK 222 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhh-hhchHHhh-hHHHHHHHHHhhhhhhhC-CHHHh------CCceeeeecccCc
Confidence 9988 7788888888999999999998 77887777 688999999999988743 33332 3357889999999
Q ss_pred CCccchHHhhcccccceeecCCccccCCCcccc---CCCCCCCEEeCCCCc
Q 037539 430 LDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI---GELTSLDFLDLSRNL 477 (622)
Q Consensus 430 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~ 477 (622)
+. .+|-+|.++..|++|-|.+|.+. ..|..+ +...-.++|+..-|+
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 98 78888999999999999999988 444433 234456777777774
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-10 Score=119.45 Aligned_cols=174 Identities=30% Similarity=0.293 Sum_probs=88.1
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
|+.|++++|.|+.. ..+..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+ ..+...- .+..+..+++
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i-~~i~~~~--~~~~l~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI-REIEGLD--LLKKLVLLSL 215 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch-hcccchH--HHHHHHHhhc
Confidence 44455555554422 223335555555555555542222 1 34556666666666665 2222111 2334444455
Q ss_pred CCCcCcccCChhhhHhHhhhcC--CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLG--LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 474 (622)
..|.+...-+.. .+. +|+.+++++|++. ..+..+..+..+..|++.+|++.. ...+...+.+..+...
T Consensus 216 ~~n~i~~~~~l~-------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 216 LDNKISKLEGLN-------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLN 285 (414)
T ss_pred ccccceeccCcc-------cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccC
Confidence 666555322211 111 2666666666665 333455566667777777776653 3334455666666666
Q ss_pred CCccCcc---CCc-cccCCCCCCEEECcCCcCcccCC
Q 037539 475 RNLFSGS---IPC-SLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 475 ~n~l~~~---~~~-~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
.|.+... ... .....+.+..+.+.+|+.....+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 286 DNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchhcchhhhhccccccccccccccccccCccccccc
Confidence 6665421 111 13455667777777777665443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-10 Score=120.21 Aligned_cols=57 Identities=37% Similarity=0.523 Sum_probs=30.4
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 402 (622)
|+.+++++|++. ..+..+..++.+..|++.+|.+.. +.. + ...+.+..+....+++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~~~-~-~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-LEG-L-ERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccc-ccc-c-cccchHHHhccCcchhc
Confidence 666777777665 333455566666777777666522 111 1 12344555555555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=118.94 Aligned_cols=149 Identities=26% Similarity=0.303 Sum_probs=79.9
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC--CCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN--LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
....+...+-+|.+..... -... ++|++|-+.+|. +. .++. ..|..++.|++|||++|.=.+.+|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~----~~~~-~~L~tLll~~n~~~l~--~is~-----~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG----SSEN-PKLRTLLLQRNSDWLL--EISG-----EFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hhheeEEEEeccchhhccC----CCCC-CccceEEEeecchhhh--hcCH-----HHHhhCcceEEEECCCCCccCcCCh
Confidence 3455555555554432211 1122 456666666664 32 1211 1245666666777666654456677
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccC--CccCcc
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCL--NGTIDK 228 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l--~~~~~~ 228 (622)
.++.+-+|++|++++..+. ..|..+.++. +|.+|++.++.....++. ...+++|++|.+..... +.....
T Consensus 590 ~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk------~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~ 662 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGIS-HLPSGLGNLK------KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK 662 (889)
T ss_pred HHhhhhhhhcccccCCCcc-ccchHHHHHH------hhheeccccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence 7777777777777777666 4566644444 477777776655444455 44577777777765431 122222
Q ss_pred ccCCCCCCCEEEc
Q 037539 229 SLSQLSKLESLSL 241 (622)
Q Consensus 229 ~l~~l~~L~~L~l 241 (622)
.+..+.+|+.+..
T Consensus 663 el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 663 ELENLEHLENLSI 675 (889)
T ss_pred hhhcccchhhhee
Confidence 3344444544444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-09 Score=79.21 Aligned_cols=60 Identities=42% Similarity=0.497 Sum_probs=37.2
Q ss_pred ccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcC
Q 037539 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 502 (622)
+|++|++++|+++...++.|.++++|++|++++|.++...|+.|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666654455666666666666666666655556666666666666666653
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.9e-09 Score=115.22 Aligned_cols=129 Identities=23% Similarity=0.227 Sum_probs=79.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc--CCCCCchhhcCCccCcEeEeecCCCCCcCchhhhh
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE--LEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQN 179 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 179 (622)
...+...+-+|.+.. ++.. ..+++|++|-+.+|. +....++.|..++.|++||+++|.-.+..|..+.+
T Consensus 523 ~~~rr~s~~~~~~~~--~~~~-------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH--IAGS-------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhh--ccCC-------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 455666666666543 1111 244567777777775 44444455677777777777776655667777555
Q ss_pred ccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCC
Q 037539 180 LSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS 245 (622)
Q Consensus 180 l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 245 (622)
+. +|++|+++++.+...+..++++..|.+|++..+.....++.....+++|++|.+..-.
T Consensus 594 Li------~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LV------HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hh------hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 54 4777777777776433337777777777777665544445555557777777665543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-09 Score=77.70 Aligned_cols=61 Identities=38% Similarity=0.490 Sum_probs=50.0
Q ss_pred CCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 418 GLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 418 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
|+|++|++++|+++...+..|.++++|++|++++|.++...++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888877777888888888888888875
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-09 Score=95.17 Aligned_cols=246 Identities=19% Similarity=0.129 Sum_probs=156.4
Q ss_pred cCcCCcEEeCCCCCCCCC------------CCccEEEcCCcccCCC-Cc-------chHhhcCCCCCCEEEccCCCCCCC
Q 037539 31 NIERLQELVLGLGKFFET------------SNINTFFLNTVSVTKS-SD-------WFQVVAKLHSLKSLVLFSCALPPV 90 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~------------~~L~~L~Ls~n~l~~~-~~-------~~~~l~~l~~L~~L~Ls~n~l~~~ 90 (622)
-+..+..+|||+|.|..- .+|+..+++.--.... .. ..+++-+||+|+.++||.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 377889999999998443 8888888887533322 22 235678899999999999988776
Q ss_pred CCC--cchhccccCcccEEEccCCCCCCCC---Cchhh---hcccccCCCccccEEEeecccCCCCCc----hhhcCCcc
Q 037539 91 NPS--FIWHFNLSTSIETLDLSDNNLPSSS---VYPWL---LNLKAFQHMVSLKSLYLSDSELEGGIP----KFFGNMCS 158 (622)
Q Consensus 91 ~~~--~~~l~~l~~~L~~L~Ls~n~l~~~~---~~~~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~ 158 (622)
.|. ...+..- +.|++|.+++|.+..+. +...+ +..+....-|.|++.....|++..-.. ..+..-.+
T Consensus 108 ~~e~L~d~is~~-t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSS-TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcC-CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 551 1233445 89999999999886311 11111 112244567889999999999874221 12344468
Q ss_pred CcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-----CCCCCCCCEEEeecccCCccCcccc---
Q 037539 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-----LGGFSSLEAWSLDVNCLNGTIDKSL--- 230 (622)
Q Consensus 159 L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~l--- 230 (622)
|+.+.+..|.|.-.....+....+..+.+ |+.|||..|.++..... +...+.|++|.+.+|-++.....++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~-LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHS-LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCc-ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 99999999987644333222221333455 99999999988753322 5566778999998888765443322
Q ss_pred -C--CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCc
Q 037539 231 -S--QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286 (622)
Q Consensus 231 -~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 286 (622)
. ..|+|..|...+|.+.+..... ..++...-...|-|..|.+.+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~--------~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILD--------ISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeee--------echhhhhhcccHHHHHHHHccCcch
Confidence 1 3578888888888765322111 1233333344455666666666654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-09 Score=100.34 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=74.4
Q ss_pred cccEEeCCCCcCcc-ccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCC-CCccccCCCCccEE
Q 037539 293 SLRFDDLSSNLLSG-GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGK-LPSPLRNFSQLRVL 369 (622)
Q Consensus 293 ~L~~L~ls~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L 369 (622)
.++++||++..++. .+...+..|..|+.|.+.++++++.+...++.-.+|+.|+++.+. ++.. ..-.+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666665553 233345556666666666666665555555566666666666554 2211 11234456666666
Q ss_pred EccCCcccccCchh-HHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCc-CCccchHHhhccccccee
Q 037539 370 DLEKNAIFGEIPTW-IGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK-LDGAIPEEIMDLVGLIAL 447 (622)
Q Consensus 370 ~L~~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 447 (622)
+++.|.+..+.... +..--++|+.|+++++.-.-. ..-.......+|+|.+|||++|. ++......|.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 66666553332111 111124555556555431100 00011122245555555555442 222222333444444444
Q ss_pred ecCCcc
Q 037539 448 NLSRNH 453 (622)
Q Consensus 448 ~L~~n~ 453 (622)
.++.|.
T Consensus 344 SlsRCY 349 (419)
T KOG2120|consen 344 SLSRCY 349 (419)
T ss_pred ehhhhc
Confidence 444444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-09 Score=98.89 Aligned_cols=179 Identities=20% Similarity=0.156 Sum_probs=134.5
Q ss_pred CCCEEEccCCccccc-CCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc-ccccCchhHHhhcccccEe
Q 037539 317 RLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA-IFGEIPTWIGESLQNLIVL 394 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L 394 (622)
.|+.+||++..|+.. .-..+..+.+|+.|.+.++++.+.+...+....+|+.|+++.+. ++.....-++++++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 599999999988732 22345678999999999999998888889999999999999874 4333344566789999999
Q ss_pred ecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcC--C-ccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCE
Q 037539 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL--D-GAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDF 470 (622)
Q Consensus 395 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 470 (622)
+++-|.+....-. .....--+.|+.|+|+|+.- . ..+..-...+++|..|||++|. ++......|.+++.|++
T Consensus 266 NlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999987654422 12222457899999998742 1 1223334689999999999986 45444456778999999
Q ss_pred EeCCCCccCccCCcc---ccCCCCCCEEECcCC
Q 037539 471 LDLSRNLFSGSIPCS---LSQLSGLGVLDLSYN 500 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~---l~~l~~L~~L~ls~N 500 (622)
|.++.|.. ++|.. +...|+|.+||+.|+
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 99999964 44543 577899999998776
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-09 Score=110.17 Aligned_cols=179 Identities=31% Similarity=0.292 Sum_probs=120.2
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCC-CCccEEeeeCCcCC----------CCCCccccCCCCccEEEccCCccc
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFL-NNIWTLNLHNNRLT----------GKLPSPLRNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~----------~~~~~~l~~l~~L~~L~L~~n~i~ 377 (622)
|-.+..+..|+.|.+.++.+... ..+..+ ..|++|. ..|.+. +.+..++. .-.|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L- 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRL- 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhH-
Confidence 45667788899999998887631 122111 1333332 122221 12222222 23578888888887
Q ss_pred ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccC
Q 037539 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTG 456 (622)
Q Consensus 378 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 456 (622)
..+...+- -++.|+.|+|++|+++... +...++.|++|||++|.+. .+|. ....+. |..|++++|.++.
T Consensus 177 ~~mD~SLq-ll~ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 177 VLMDESLQ-LLPALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred HhHHHHHH-HHHHhhhhccchhhhhhhH-------HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh
Confidence 55555544 5789999999999988332 3337899999999999998 3332 233344 9999999999885
Q ss_pred CCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEECcCCcCcc
Q 037539 457 PITPKIGELTSLDFLDLSRNLFSGSI-PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 457 ~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
...+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.||++.|
T Consensus 247 --L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 247 --LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred --hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 556788999999999999887531 1224566788999999999975
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-08 Score=104.66 Aligned_cols=181 Identities=26% Similarity=0.258 Sum_probs=118.4
Q ss_pred CCccCCCCCccEEeeeCCcCCCCCCccccCC-CCccEEEccCCcc----------cccCchhHHhhcccccEeecCCCcC
Q 037539 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF-SQLRVLDLEKNAI----------FGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 333 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~i----------~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
|-.+..+.+|+.|.+.+|.+.. ...+..+ ..|++|--. |.+ .+++....- -..|.+.+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 4445567788888888888763 1111111 123333222 111 011111110 13577778888877
Q ss_pred cccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
. .....+. -++.++.|||++|+++.. +.+..++.|++|||++|.+....--...++. |+.|.+++|.++..
T Consensus 177 ~-~mD~SLq-----ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 177 V-LMDESLQ-----LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred H-hHHHHHH-----HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence 6 2222222 588999999999999733 3788999999999999999843333444555 99999999999844
Q ss_pred CCccccCCCCCCEEECcCCcCcccCC--CCCcCCccCcccccCCcCCCCC
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGKIP--SGTQLQSFNASVYAGNLELCGL 529 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~~lc~~ 529 (622)
..+.++.+|+.||+++|-+.+--. ..+.+..+..+.+.|||.-|.+
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 357899999999999998875321 1234555666778999988854
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.7e-08 Score=88.41 Aligned_cols=238 Identities=14% Similarity=0.053 Sum_probs=166.1
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCC------------------CCCCccEEEcCCcccCCC-
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFF------------------ETSNINTFFLNTVSVTKS- 64 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~------------------~~~~L~~L~Ls~n~l~~~- 64 (622)
..+.++++|++.+.++....+.. .+.+-.+|+..+++.-... ++|+|+..+||.|.+...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 35667899999987776655553 2335678888888875432 229999999999998877
Q ss_pred -CcchHhhcCCCCCCEEEccCCCCCCCCCC-----------cchhccccCcccEEEccCCCCCCCCCchhhhcccccCCC
Q 037539 65 -SDWFQVVAKLHSLKSLVLFSCALPPVNPS-----------FIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM 132 (622)
Q Consensus 65 -~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----------~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l 132 (622)
+.....+++-+.|++|.+++|.+...... ..-..+- +.|++.....|++.. .|..... ..+..-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlen--gs~~~~a-~~l~sh 184 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLEN--GSKELSA-ALLESH 184 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhcc--CcHHHHH-HHHHhh
Confidence 34445678889999999999987543220 0111234 789999999999974 3322211 123444
Q ss_pred ccccEEEeecccCCCCCc-----hhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--
Q 037539 133 VSLKSLYLSDSELEGGIP-----KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-- 205 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-- 205 (622)
.+|+.+.+..|.|..... ..+..+.+|+.||+..|.++......++.+ +..++. |++|.+..|-++.....
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a-l~~W~~-lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA-LCEWNL-LRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH-hcccch-hhhccccchhhccccHHHH
Confidence 799999999998763321 234567899999999999987777666665 666677 99999999988754432
Q ss_pred ---C--CCCCCCCEEEeecccCCccCccc-----c--CCCCCCCEEEccCCCCcc
Q 037539 206 ---L--GGFSSLEAWSLDVNCLNGTIDKS-----L--SQLSKLESLSLDGNSLRA 248 (622)
Q Consensus 206 ---l--~~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~l~~ 248 (622)
| ...|+|..|....|.+.+.+... + ..+|-|..|.+.+|.+..
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2 24578888989888775433222 1 257778888888888764
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-07 Score=87.28 Aligned_cols=186 Identities=19% Similarity=0.185 Sum_probs=100.6
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC-CCCccccCCCCccEEEccCCcccccC---chhH
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEI---PTWI 384 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~~ 384 (622)
...+.++|.|+.|+++.|.+...+-..-....+|+.|.|.+..+.- .....+..+|.++.|+++.|.. ..+ ...+
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~ 168 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDDNCI 168 (418)
T ss_pred HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh-hhhccccccc
Confidence 3345567777777777777653322111345577777777766541 2234455667777777777733 110 0011
Q ss_pred HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc-hHHhhcccccceeecCCccccCCC-cccc
Q 037539 385 GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI-PEEIMDLVGLIALNLSRNHLTGPI-TPKI 462 (622)
Q Consensus 385 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~l 462 (622)
...-+.++++.+..|...... -........|++..+-+..|++.+.. .+.+..++.+..|+|+.|++.... .+.+
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~---~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L 245 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWL---NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL 245 (418)
T ss_pred cccchhhhhhhcCCcHHHHHH---HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH
Confidence 111234445555444322100 00111124566777777777775432 234556677777888888776422 2566
Q ss_pred CCCCCCCEEeCCCCccCccCCcc------ccCCCCCCEEECc
Q 037539 463 GELTSLDFLDLSRNLFSGSIPCS------LSQLSGLGVLDLS 498 (622)
Q Consensus 463 ~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~ls 498 (622)
..+++|.-|.+++|++.+..... ++.++.++.|+=+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77788888888888776543221 3566666666533
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-07 Score=86.63 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=51.9
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhhhccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 127 (622)
+.++++||.+|.|++..+++.-+.++|.|++|+|+.|++...+. .+ ... .+|++|-|.+..+.- ... -.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---~lp~p~-~nl~~lVLNgT~L~w-~~~-----~s 140 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---SLPLPL-KNLRVLVLNGTGLSW-TQS-----TS 140 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc---cCcccc-cceEEEEEcCCCCCh-hhh-----hh
Confidence 67777777777777665555567777777777777777765433 22 234 677777777766543 111 11
Q ss_pred ccCCCccccEEEeecc
Q 037539 128 AFQHMVSLKSLYLSDS 143 (622)
Q Consensus 128 ~l~~l~~L~~L~L~~n 143 (622)
.+..+|.++.|.++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 2345666666666666
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-08 Score=95.65 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCCccEEeeeCCcCC-CCCCccccCCCCccEEEccCC
Q 037539 339 LNNIWTLNLHNNRLT-GKLPSPLRNFSQLRVLDLEKN 374 (622)
Q Consensus 339 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n 374 (622)
+..|+.+.+++++.. ....+.+..+++|+.+++-++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 344444444444432 112223344444444444444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-07 Score=78.32 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=56.1
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEE
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 496 (622)
...|+..+|++|.+....+.--...+..++|++++|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.++..||
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 445556666677666333322234456777777777776 45555777777777777777776 5556666666677777
Q ss_pred CcCCcCcccCCCC
Q 037539 497 LSYNNLSGKIPSG 509 (622)
Q Consensus 497 ls~N~l~~~~p~~ 509 (622)
..+|.+. .+|.+
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 7776665 45544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-06 Score=75.94 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=96.1
Q ss_pred CcEEeCCCCCCCCC-------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEE
Q 037539 35 LQELVLGLGKFFET-------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETL 107 (622)
Q Consensus 35 L~~L~L~~n~i~~~-------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L 107 (622)
=+.++|.+.++... .+...+||++|++...+ .|..++.|.+|.|.+|.|+...| .+..+.++|+.|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc----cCCCccccceEEecCCcceeecc---chhhhccccceE
Confidence 45677777666333 67889999999988776 47889999999999999998877 455555889999
Q ss_pred EccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc---hhhcCCccCcEeEeecCC
Q 037539 108 DLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP---KFFGNMCSLKKLRLSYNK 168 (622)
Q Consensus 108 ~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~ 168 (622)
.|.+|.|.. ++++..+..+|+|++|.+-+|.++..-- ..+..+++|+.||.++-.
T Consensus 94 ~LtnNsi~~------l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 94 ILTNNSIQE------LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcchhh------hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999975 4667778899999999999998874322 246788999999987654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-07 Score=77.61 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEE
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 496 (622)
.+.++.++|++|.+. .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+..+.-+.| .-...-..+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHH
Confidence 345555555555555 55555666666666666666665 445555556666666666666553322211 111222234
Q ss_pred CcCCcCcccCCCC
Q 037539 497 LSYNNLSGKIPSG 509 (622)
Q Consensus 497 ls~N~l~~~~p~~ 509 (622)
+.++++.+..|..
T Consensus 153 lgnepl~~~~~~k 165 (177)
T KOG4579|consen 153 LGNEPLGDETKKK 165 (177)
T ss_pred hcCCcccccCccc
Confidence 4666776666654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-06 Score=72.30 Aligned_cols=60 Identities=27% Similarity=0.434 Sum_probs=33.1
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCC
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 170 (622)
.+...+||++|.+.. +..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|+|.
T Consensus 42 d~~d~iDLtdNdl~~---------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhh---------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 455566666666532 333455566666666666666554444344555666666665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-07 Score=88.93 Aligned_cols=132 Identities=21% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCCCCCEEEccCCc-ccccCCCcc-CCCCCccEEeeeCCcCCC--CCCccccCCCCccEEEccCCcccccC----chhHH
Q 037539 314 HFDRLFILNLANNR-LSGKIPDSM-GFLNNIWTLNLHNNRLTG--KLPSPLRNFSQLRVLDLEKNAIFGEI----PTWIG 385 (622)
Q Consensus 314 ~~~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~ 385 (622)
++.+|+.|.++.|+ +++.....+ .+.+.|+.+++.++.... .+...-.+++.|++|.+++|....+- .....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555553 332222222 234556666665554321 11222235666777777666532211 00111
Q ss_pred hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-cc-chHHhhcccccceeec
Q 037539 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GA-IPEEIMDLVGLIALNL 449 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L 449 (622)
.+...|+.+.+++++....- .......+++|+.+++-+++-. .. +...-.+++++++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDA----TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHH----HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 14556777777777654221 1122236777777777776532 12 2222345666665544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6e-05 Score=75.93 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=80.9
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecc-cCCCC
Q 037539 70 VVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDS-ELEGG 148 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~ 148 (622)
.+..++++++|++++|.++.. | .++.+|++|.+++|.--. .+|..+ .++|++|++++| .+. .
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P------~LP~sLtsL~Lsnc~nLt-sLP~~L--------P~nLe~L~Ls~Cs~L~-s 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-P------VLPNELTEITIENCNNLT-TLPGSI--------PEGLEKLTVCHCPEIS-G 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-C------CCCCCCcEEEccCCCCcc-cCCchh--------hhhhhheEccCccccc-c
Confidence 355678889999998876653 2 455789999998864322 444322 257888888887 444 3
Q ss_pred CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCC-CC-CCCCEEEeecccCCccC
Q 037539 149 IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG-GF-SSLEAWSLDVNCLNGTI 226 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~-~l-~~L~~L~L~~n~l~~~~ 226 (622)
+| .+|+.|+++.+.... +..+|.+|+.|.+.+++.... ..+. .+ ++|++|++++|... ..
T Consensus 110 LP------~sLe~L~L~~n~~~~----------L~~LPssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i-~L 171 (426)
T PRK15386 110 LP------ESVRSLEIKGSATDS----------IKNVPNGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNI-IL 171 (426)
T ss_pred cc------cccceEEeCCCCCcc----------cccCcchHhheeccccccccc-cccccccCCcccEEEecCCCcc-cC
Confidence 44 346777776654432 333444577777754321100 0011 11 56777777777654 23
Q ss_pred ccccCCCCCCCEEEccCCC
Q 037539 227 DKSLSQLSKLESLSLDGNS 245 (622)
Q Consensus 227 ~~~l~~l~~L~~L~l~~n~ 245 (622)
|..+. .+|+.|+++.+.
T Consensus 172 P~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 172 PEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccc--ccCcEEEecccc
Confidence 33333 467777776553
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-06 Score=91.70 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred CcCCcEEeCCCCCCCC----------CCCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 32 IERLQELVLGLGKFFE----------TSNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 32 l~~L~~L~L~~n~i~~----------~~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
-.+|++||+++..... +|+|+.|.+++-.+... ++.+...++|+|..||+|+++++.. .++.++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L- 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRL- 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcc-
Confidence 4688899998865422 19999999988776555 2344778899999999999988776 578888
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCC--c----hhhcCCccCcEeEeecCCCCCcCch
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI--P----KFFGNMCSLKKLRLSYNKLSGQYSQ 175 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~i~~~~~~ 175 (622)
++|++|.+.+=.+.. . ..+..+-++++|++||+|........ . +.-..+|+|+.||.|++.+.+..-.
T Consensus 195 knLq~L~mrnLe~e~--~----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFES--Y----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccHHHHhccCCCCCc--h----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 999999888777653 1 23345578899999999987655322 1 1223588999999998887765544
Q ss_pred hh
Q 037539 176 VI 177 (622)
Q Consensus 176 ~~ 177 (622)
.+
T Consensus 269 ~l 270 (699)
T KOG3665|consen 269 EL 270 (699)
T ss_pred HH
Confidence 43
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=6e-05 Score=75.90 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCC-cccccCchhHHhhcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN-AIFGEIPTWIGESLQNL 391 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~L 391 (622)
..+.+++.|++++|.++ .+|. -.++|++|.+++|.-....|+.+ .++|++|++++| .+ ..+| ++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP-------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLP-------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccc-------ccc
Confidence 34566677777777665 3341 13357777776654333445433 246777777766 33 3333 345
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC--ccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD--GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
+.|++.++.... ++. -.++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|+.+. .+|+
T Consensus 115 e~L~L~~n~~~~-L~~--------LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk 180 (426)
T PRK15386 115 RSLEIKGSATDS-IKN--------VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQ 180 (426)
T ss_pred ceEEeCCCCCcc-ccc--------CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCc
Confidence 555565544321 100 1234555555432211 011100 0146666777666654 2333332 4666
Q ss_pred EEeCCCC
Q 037539 470 FLDLSRN 476 (622)
Q Consensus 470 ~L~Ls~n 476 (622)
.|+++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 6666655
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=52.18 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=22.7
Q ss_pred ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG 171 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 171 (622)
++|++|++++|+|+ .+|..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35666666666666 344456666666777776666664
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.5e-05 Score=85.41 Aligned_cols=135 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CCccEEEccCCcc-cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 364 SQLRVLDLEKNAI-FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 364 ~~L~~L~L~~n~i-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
.+|++||+++... ....|..++..+|+|+.|.+++-.+.... |. ....++|+|..||+|+++++.. .++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FS-QLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HH-HHhhccCccceeecCCCCccCc--HHHhccc
Confidence 3455555555432 22233344445566666666655443221 11 1122566666666666666522 4566666
Q ss_pred ccceeecCCccccC-CCccccCCCCCCCEEeCCCCccCccC------CccccCCCCCCEEECcCCcCcc
Q 037539 443 GLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSGSI------PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 443 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+|++|.+.+=.+.. .....+.++++|+.||+|..+..... -++-..+|.|+.||.|++.+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66666665544432 11223455666666666655443211 1122346667777777665543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.6e-05 Score=52.05 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=16.2
Q ss_pred ccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 443 GLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23333445555555555555544
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.5e-06 Score=75.93 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCch-hHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT-WIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~ 393 (622)
+.+.++|++-+|.++++ .....++.|+.|.||-|+|+.. ..+..|++|++|+|..|.| ..+.. ....++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhh
Confidence 44677888888888765 3456789999999999999855 4588999999999999998 44432 33457899999
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
|+|..|+..+..+..........+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999998888888777777899999876
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00062 Score=58.26 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
.+|.++++|+.+.+.. .+.......|..+.+|+.+.+.++ +.......|..+++|+.+.+.+ .+ ..++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~-~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL-KSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc-cccccccccccc
Confidence 4566666777777764 455455566666767777777664 5545555666776777777755 32 344455554466
Q ss_pred cccEeecCCC
Q 037539 390 NLIVLSLKSN 399 (622)
Q Consensus 390 ~L~~L~L~~n 399 (622)
+|+.+++..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 6666666543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00062 Score=58.29 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=29.2
Q ss_pred CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCC
Q 037539 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398 (622)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~ 398 (622)
..|..+.+|+.+.+.. .+.......|..+++|+.+.+.++ + ..++...+.++++++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccc
Confidence 3455666666666654 344444556666666666666654 3 455555555555566666643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00032 Score=65.15 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=46.8
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCC--cCCCCCCccccCCCCccEEEccCCcccccCchhH--H
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN--RLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWI--G 385 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~--~ 385 (622)
.....+..|+.|.+.+..++.. ..+..+++|++|.++.| .+.+.++-....+|+|++|++++|+|. .+ ..+ .
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~l-stl~pl 112 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DL-STLRPL 112 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cc-cccchh
Confidence 3334445566666655555422 23445666777777777 444444444445567777777777662 11 111 1
Q ss_pred hhcccccEeecCCCcCc
Q 037539 386 ESLQNLIVLSLKSNKFH 402 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~ 402 (622)
..+++|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 13455566666665544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=1.3e-05 Score=74.42 Aligned_cols=99 Identities=28% Similarity=0.264 Sum_probs=54.9
Q ss_pred CccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCC
Q 037539 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGF 209 (622)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l 209 (622)
+.+.++|+.-+|.++++ ....+++.|++|.|+-|+|+...| +..|.+ |++|+|..|.|.....- +.++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-------l~rCtr-LkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-------LQRCTR-LKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-------HHHHHH-HHHHHHHhcccccHHHHHHHhcC
Confidence 34555556666655532 233456666666666666665444 445555 66666666665532222 5666
Q ss_pred CCCCEEEeecccCCccCcc-----ccCCCCCCCEEE
Q 037539 210 SSLEAWSLDVNCLNGTIDK-----SLSQLSKLESLS 240 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~ 240 (622)
|+|+.|.|..|.-.+..+. .+.-+|+|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6777777766654433222 344567777665
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00044 Score=64.27 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=40.7
Q ss_pred cCEEEccCC--cccccCCC-CCCCCCCCEEEeecccCCcc-CccccCCCCCCCEEEccCCCCcccccccccCCCCcccCC
Q 037539 189 LEGLYLRWN--DFTGPIPH-LGGFSSLEAWSLDVNCLNGT-IDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSI 264 (622)
Q Consensus 189 L~~L~L~~n--~~~~~~~~-l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 264 (622)
|+.|.++.| .+.+..+. ...+|+|+++++++|++... -...+..+++|..|++.+|..+... .-
T Consensus 67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~------------dy 134 (260)
T KOG2739|consen 67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD------------DY 134 (260)
T ss_pred hhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc------------cH
Confidence 555555555 33332222 33445566666666655420 0112334556666777766654321 22
Q ss_pred chhHHhcCCCCcEEEccC
Q 037539 265 PDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 265 ~~~~~~~~~~L~~L~l~~ 282 (622)
-..++..+++|++|+-.+
T Consensus 135 re~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHHHHhhhhccccccc
Confidence 344556666777766544
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=4.9e-05 Score=79.55 Aligned_cols=186 Identities=23% Similarity=0.174 Sum_probs=109.9
Q ss_pred CcEEeCCCCCCCCC------------CCccEEEcCCcccCCC--CcchHhhcCC-CCCCEEEccCCCCCCCCCC--cchh
Q 037539 35 LQELVLGLGKFFET------------SNINTFFLNTVSVTKS--SDWFQVVAKL-HSLKSLVLFSCALPPVNPS--FIWH 97 (622)
Q Consensus 35 L~~L~L~~n~i~~~------------~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~--~~~l 97 (622)
+..|.|.+|.+..- +.|..|++++|.+.+. ....+.+... ..+++|++..|.+++.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777776332 7777777777777755 2223344443 5667777777777654321 1234
Q ss_pred ccccCcccEEEccCCCCCCCC---CchhhhcccccCCCccccEEEeecccCCCCCc----hhhcCCcc-CcEeEeecCCC
Q 037539 98 FNLSTSIETLDLSDNNLPSSS---VYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP----KFFGNMCS-LKKLRLSYNKL 169 (622)
Q Consensus 98 ~~l~~~L~~L~Ls~n~l~~~~---~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~-L~~L~L~~n~i 169 (622)
... ..++.+|++.|.+.... ++..+. ..+....++++|++++|.++.... ..+...+. +..|++..|.+
T Consensus 169 ~~~-~~l~~l~l~~n~l~~~g~~~l~~~l~--~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 169 EKN-EHLTELDLSLNGLIELGLLVLSQALE--SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred hcc-cchhHHHHHhcccchhhhHHHhhhhh--hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 443 77777777777764211 111110 023356778888888887763221 23445555 66788888877
Q ss_pred CCcCchhhhhccccccCCCcCEEEccCCcccccCCC-----CCCCCCCCEEEeecccCCc
Q 037539 170 SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-----LGGFSSLEAWSLDVNCLNG 224 (622)
Q Consensus 170 ~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-----l~~l~~L~~L~L~~n~l~~ 224 (622)
.+.....+... +......+++++++.|.++..... +..++.++++.++.|.+..
T Consensus 246 ~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHH-hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 75533332222 334422378888888887764332 5566788888888888764
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=3.1e-05 Score=80.99 Aligned_cols=191 Identities=21% Similarity=0.193 Sum_probs=99.2
Q ss_pred ccEEEcCCcccCCC--CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcc---c-cCcccEEEccCCCCCCCCCchhhh
Q 037539 51 INTFFLNTVSVTKS--SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFN---L-STSIETLDLSDNNLPSSSVYPWLL 124 (622)
Q Consensus 51 L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~---l-~~~L~~L~Ls~n~l~~~~~~~~~~ 124 (622)
+..|.|.+|.+.+. ....+.+...+.|+.|++++|.+.+... ..+.+ . ...+++|++..|.++. .....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~-~g~~~l- 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTS-EGAAPL- 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccc-cchHHH-
Confidence 67777777777666 4455567777777777777777764322 11111 1 1445667777776665 222211
Q ss_pred cccccCCCccccEEEeecccCCC----CCchhhc----CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccC
Q 037539 125 NLKAFQHMVSLKSLYLSDSELEG----GIPKFFG----NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRW 196 (622)
Q Consensus 125 ~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~ 196 (622)
...+.....++.++++.|.+.. .++..+. ...+++.|.+++|.++......+... +......+.++++..
T Consensus 165 -~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~-l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 -AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV-LASGESLLRELDLAS 242 (478)
T ss_pred -HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH-HhccchhhHHHHHHh
Confidence 2234456677777777776531 1222222 35566666676666653332222221 333333355566666
Q ss_pred CcccccC-----CCCCCC-CCCCEEEeecccCCccCc----cccCCCCCCCEEEccCCCCc
Q 037539 197 NDFTGPI-----PHLGGF-SSLEAWSLDVNCLNGTID----KSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 197 n~~~~~~-----~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~ 247 (622)
|.+.+.. +.+..+ ..+++++++.|.++.... ..+..++.++++.++.|.+.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 6655321 113333 455666666666554322 22334455555565555544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0011 Score=71.15 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=33.1
Q ss_pred CCCCccEEeeeCCc-CCCCCCcccc-CCCCccEEEccCCc-ccccCchhHHhhcccccEeecCCCcC
Q 037539 338 FLNNIWTLNLHNNR-LTGKLPSPLR-NFSQLRVLDLEKNA-IFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 338 ~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
.+++|+.|+++++. +++..-..+. .+++|++|.+.+|. +++..-..+.+.++.|+.|+++.|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 4332222222 25666666655555 34444444444556666666665554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0015 Score=70.13 Aligned_cols=134 Identities=19% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCCCCCEEEccCC-ccccc-CCCccCCCCCccEEeeeCC-cCCCCC----CccccCCCCccEEEccCCc-ccccCchhHH
Q 037539 314 HFDRLFILNLANN-RLSGK-IPDSMGFLNNIWTLNLHNN-RLTGKL----PSPLRNFSQLRVLDLEKNA-IFGEIPTWIG 385 (622)
Q Consensus 314 ~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~~----~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~ 385 (622)
.++.|+.+.+.++ .++.. .......++.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4678888888877 33321 2234456788999999873 211111 1244567899999999988 5445555556
Q ss_pred hhcccccEeecCCCc-CcccCChhhhHhHhhhcCCccEEECCCCcCCc--cchHHhhcccccceeecCC
Q 037539 386 ESLQNLIVLSLKSNK-FHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 451 (622)
..+++|+.|.+.+|. +++..-..+. ..++.|++|+++++.... .+.....++++|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 568999999988887 5544333333 368889999999887642 1233344566666655433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.0042 Score=55.57 Aligned_cols=60 Identities=25% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCC
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDN 112 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n 112 (622)
..++.+|-+++.|... -+ .+..++.++.|.+.+|.-.+.... ..+....++|+.|++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle---~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLE---HLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred ceEEEEecCCchHHHHHHH---HHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCC
Confidence 3455555555555555 33 455556666666665543322110 223333355555555555
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.015 Score=32.09 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=4.4
Q ss_pred CEEeCCCCccC
Q 037539 469 DFLDLSRNLFS 479 (622)
Q Consensus 469 ~~L~Ls~n~l~ 479 (622)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.025 Score=31.17 Aligned_cols=12 Identities=58% Similarity=0.612 Sum_probs=5.8
Q ss_pred cceeecCCcccc
Q 037539 444 LIALNLSRNHLT 455 (622)
Q Consensus 444 L~~L~L~~n~l~ 455 (622)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444455555444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.014 Score=52.25 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=57.6
Q ss_pred ccEEECCCCcCCccchHHhhcccccceeecCCccc-cCCCccccCC-CCCCCEEeCCCCc-cCccCCccccCCCCCCEEE
Q 037539 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL-TGPITPKIGE-LTSLDFLDLSRNL-FSGSIPCSLSQLSGLGVLD 496 (622)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ 496 (622)
++.+|-+++.|..+..+.+.+++.++.|.+.+|.- .+.-.+.+++ .++|+.|+|++|+ ||+..-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 56778888888777777778888888888888753 2222233333 5788888888774 6766666677788888887
Q ss_pred CcCCcC
Q 037539 497 LSYNNL 502 (622)
Q Consensus 497 ls~N~l 502 (622)
+.+=+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 765443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.17 Score=25.86 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=3.5
Q ss_pred ccEEEccCCcc
Q 037539 366 LRVLDLEKNAI 376 (622)
Q Consensus 366 L~~L~L~~n~i 376 (622)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.31 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCccEEEccCCcccccCchhHH
Q 037539 364 SQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 364 ~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|+|++|++ ..+|...|
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQL-SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC-CcCCHHHc
Confidence 5667777777776 66666554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.31 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCccEEEccCCcccccCchhHH
Q 037539 364 SQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 364 ~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|+|++|++ ..+|...|
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQL-SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC-CcCCHHHc
Confidence 5667777777776 66666554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.39 Score=27.57 Aligned_cols=14 Identities=50% Similarity=0.534 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccC
Q 037539 466 TSLDFLDLSRNLFS 479 (622)
Q Consensus 466 ~~L~~L~Ls~n~l~ 479 (622)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.39 Score=27.57 Aligned_cols=14 Identities=50% Similarity=0.534 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccC
Q 037539 466 TSLDFLDLSRNLFS 479 (622)
Q Consensus 466 ~~L~~L~Ls~n~l~ 479 (622)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.43 Score=59.12 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=46.2
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~~~~ 550 (622)
||++|+|+...+..|..+++|+.|+|++|++.|.|.... |.......... -..+....|..|...++.......
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W----L~~WL~~~~v~-v~~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR----LPRWAEEKGVK-VRQPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH----HHHHHHhcCcc-ccCCcccCCCCChHHCCCCcccCC
Confidence 578888887777788889999999999999998866432 21111111100 111223457777776666655443
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.8 Score=44.27 Aligned_cols=63 Identities=24% Similarity=0.088 Sum_probs=30.0
Q ss_pred cccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC---CCchhhcCCccCcEeEeecCCC
Q 037539 103 SIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG---GIPKFFGNMCSLKKLRLSYNKL 169 (622)
Q Consensus 103 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~i 169 (622)
.+.+++++.|...+ ++|..+. ....-.-+++++.+...+.- ..+-..+.-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kd-dip~~~n---~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKD-DIPRTLN---KKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCc-cchhHHH---HhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45666666666655 5554331 11233345555555554431 1112233345566666665543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=86.24 E-value=0.33 Score=27.30 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=4.9
Q ss_pred CccEEECCCCcCC
Q 037539 419 LVRCLDLSSNKLD 431 (622)
Q Consensus 419 ~L~~L~L~~n~l~ 431 (622)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
|
... |
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=86.13 E-value=3.8 Score=42.09 Aligned_cols=207 Identities=13% Similarity=-0.050 Sum_probs=99.1
Q ss_pred cCcCCcEEeCCCCCCCCC------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 31 NIERLQELVLGLGKFFET------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
.-+.++++|++.|.+... ...--+.++.|..++. ..-...=..-..+.+++|+.|...+.++....+..-..-
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 346678888888887443 1111155556655544 110000011135777888887777666622222222245
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC--------CCchhhcCCccCcEeEeecCCCCCcCch
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG--------GIPKFFGNMCSLKKLRLSYNKLSGQYSQ 175 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 175 (622)
+++++.+...++-... ..--.++.-+++.+.+++.|..+. ..-+.|..=.++ +|++..+.....-+.
T Consensus 243 l~~ld~s~tgirlD~l----~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lk 317 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLL----TSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLK 317 (553)
T ss_pred hhcccccccccchhhc----ccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhh
Confidence 6777777665543111 111123445667777776665431 112234444556 666666655433332
Q ss_pred hhhhcccccc-CCCcCEEEccCCcccccCC--C-CCCCCCCCEEEeecccCCccCcc--ccCCCCCCCEEEccCC
Q 037539 176 VIQNLSFGCV-VNSLEGLYLRWNDFTGPIP--H-LGGFSSLEAWSLDVNCLNGTIDK--SLSQLSKLESLSLDGN 244 (622)
Q Consensus 176 ~~~~l~l~~~-~~~L~~L~L~~n~~~~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n 244 (622)
.+--. .... ...=-+++++.|...+.-. . +.+ ..+++|++.+|.+.+.... .+..-+..+.+++..-
T Consensus 318 s~LLg-la~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 318 SMLLG-LAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred hhhcc-cccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeecccccccccccc
Confidence 22100 0000 0101344555554433111 1 222 2378888888877655432 2334456666766654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.039 Score=50.54 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=64.3
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
.....+.||++.|++.... ..+. .+..+..||++.|++. ..|+.+.+...+..+++..|..+ ..|.+++..+
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s-----~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFS-----ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchH-----HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 4677888888888765322 2222 4666778888888887 77888888888888888888777 6778888888
Q ss_pred CCCEEeCCCCccC
Q 037539 467 SLDFLDLSRNLFS 479 (622)
Q Consensus 467 ~L~~L~Ls~n~l~ 479 (622)
.++++++-+|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888765
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.99 E-value=0.12 Score=47.39 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred ccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhh
Q 037539 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439 (622)
Q Consensus 360 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 439 (622)
+......+.||++.|++ ...-..+. .++.|..|+++.|.+. ..|..+. ....++.+++..|..+ ..|.++.
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~-----q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAK-----QQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchH-HHHHHHHHhccHhhHh-hChhhHH-----HHHHHHHHHhhccchh-hCCcccc
Confidence 33445556666666654 22222222 3455666666666554 2233222 3444555555555555 5566666
Q ss_pred cccccceeecCCcccc
Q 037539 440 DLVGLIALNLSRNHLT 455 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~ 455 (622)
..+.++.+++.+|.++
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 6666666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 622 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-27 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-08 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-27 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-08 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-21 | ||
| 2z7x_B | 520 | Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu | 2e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 2e-04 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 3e-04 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-04 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 4e-04 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 4e-04 | ||
| 3a79_B | 562 | Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len | 6e-04 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 7e-04 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-100
Identities = 146/493 (29%), Positives = 210/493 (42%), Gaps = 43/493 (8%)
Query: 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM 132
+L L L P F + +E+L LS NN LL ++
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSC---SLLESLALSSNNFSGELPMDTLLKMR----- 343
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMC-SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
LK L LS +E G +P+ N+ SL L LS N SG + N+L+
Sbjct: 344 -GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK----NTLQE 398
Query: 192 LYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI- 249
LYL+ N FTG IP L S L + L N L+GTI SL LSKL L L N L
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 250 --SLCILTSPI-------GISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD-----LSLR 295
L + + ++ IP + +N L++++LSNN G++P +L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK 355
LS+N SG +P L L+L N +G IP +M + + N + GK
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGK 573
Query: 356 LPSPLRNFSQLRVLDLEKNAI--FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY 413
++N + N + G + L ++ S + G+ F
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTF---- 628
Query: 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473
G + LD+S N L G IP+EI + L LNL N ++G I ++G+L L+ LDL
Sbjct: 629 -DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLAN 533
S N G IP ++S L+ L +DLS NNLSG IP Q ++F + + N LCG PL
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Query: 534 MCLDEESTPGPGT 546
Sbjct: 748 CDPSNADGYAHHQ 760
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 4e-84
Identities = 134/457 (29%), Positives = 189/457 (41%), Gaps = 63/457 (13%)
Query: 66 DWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLN 125
+ + LK L + + + ++E LD+S NN S+ P+L +
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNF--STGIPFLGD 221
Query: 126 LKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCV 185
+L+ L +S ++L G + LK L +S N+ G L
Sbjct: 222 CS------ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLK---- 269
Query: 186 VNSLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG 243
SL+ L L N FTG IP G +L L N G + S LESL+L
Sbjct: 270 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 244 NSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNL 303
N+ S +P L L+LS N F G+LP+ +LS++
Sbjct: 328 NNF--------------SGELPMDTLLKMRGLKVLDLSFNEFSGELPE---SLTNLSAS- 369
Query: 304 LSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG--FLNNIWTLNLHNNRLTGKLPSPLR 361
L L+L++N SG I ++ N + L L NN TGK+P L
Sbjct: 370 --------------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVR 421
N S+L L L N + G IP+ +G SL L L L N G IP + + +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMY-----VKTLE 469
Query: 422 CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481
L L N L G IP + + L ++LS N LTG I IG L +L L LS N FSG+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 482 IPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNAS 518
IP L L LDL+ N +G IP+ QS +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 1e-78
Identities = 131/470 (27%), Positives = 191/470 (40%), Gaps = 55/470 (11%)
Query: 67 WFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNL 126
+ V + + S+ L S L + T +E+L LS++++ +
Sbjct: 42 FDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI--NGSVSGFKCS 99
Query: 127 KAFQHMVSLKSLYLSDSELEGGIPKF--FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184
SL SL LS + L G + G+ LK L +S N L +S G
Sbjct: 100 A------SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-----VSGGL 148
Query: 185 VVNSLEGLYLRWNDFTGPIP----HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLS 240
+NSLE L L N +G G L+ ++ N ++G + +S+ LE L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206
Query: 241 LDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLR 295
+ N+ S IP + D S L +L++S N G L+
Sbjct: 207 VSSNNF--------------STGIP-FLGDCSA-LQHLDISGNKLSGDFSRAISTCTELK 250
Query: 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRLTG 354
++SSN G +P L L L+LA N+ +G+IPD + G + + L+L N G
Sbjct: 251 LLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414
+P + S L L L N GE+P ++ L VL L N+F G +P N
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--- 365
Query: 415 STLGLVRCLDLSSNKLDGAIPEEI--MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472
+ LDLSSN G I + L L L N TG I P + + L L
Sbjct: 366 -LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS----GTQLQSFNAS 518
LS N SG+IP SL LS L L L N L G+IP L++
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 1e-68
Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 42/331 (12%)
Query: 205 HLGGFSSLEAWSLDVNC----LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260
LG ++L +W +C G + + +Q ++ +L L G +L
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK------------ 64
Query: 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFI 320
IP +L L++L + N L G +P +L
Sbjct: 65 PYPIPSSLANLPY-LNFLYIGGI------------------NNLVGPIPPAIAKLTQLHY 105
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
L + + +SG IPD + + + TL+ N L+G LP + + L + + N I G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P G + +++ N+ G IP F N L L +DLS N L+G
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-----LNLAF-VDLSRNMLEGDASVLFGS 219
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
++L++N L + K+G +L+ LDL N G++P L+QL L L++S+N
Sbjct: 220 DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
NL G+IP G LQ F+ S YA N LCG PL
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-37
Identities = 80/334 (23%), Positives = 124/334 (37%), Gaps = 85/334 (25%)
Query: 73 KLHSLKSLVLFSCALPPVN--PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQ 130
+ + + +L L LP PS + + + L + N + P + L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANL---PYLNFLYIGGINNLVGPIPPAIAKLT--- 101
Query: 131 HMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190
L LY++ + + G IP F + +L L SYN LS
Sbjct: 102 ---QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------------------- 138
Query: 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS 250
G +P S+S L L ++ DGN +
Sbjct: 139 ----------GTLPP-----------------------SISSLPNLVGITFDGNRI---- 161
Query: 251 LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD----LSLRFDDLSSNLLSG 306
S +IPD + S + + +S N GK+P L+L F DLS N+L G
Sbjct: 162 ----------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL 366
+ ++LA N L+ + +G N+ L+L NNR+ G LP L L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
L++ N + GEIP G +LQ V + +NK
Sbjct: 271 HSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 8e-58
Identities = 101/468 (21%), Positives = 161/468 (34%), Gaps = 47/468 (10%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
+ L L L + L P + +TSI L LS++ L S++ L LK
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLK---- 246
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+L L LS + L F + L+ L YN + +S + L ++
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF------NVRY 300
Query: 192 LYLRWNDFTGPIPH----------LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSL 241
L L+ + I LE +++ N + G + L L+ LSL
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 242 DGNSLRAISLCILTSPIGISDSIPDWFWDLSN-KLSYLNLSNNHFRGKLPDL-----SLR 295
+ +L + F L++ L LNL+ N D L
Sbjct: 361 SNSFTSLRTLT------------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408
Query: 296 FDDLSSNLLSGGLP-DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354
DL N + L W + +F + L+ N+ +S + ++ L L L
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 355 --KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE 412
PSP + L +LDL N I + E L+ L +L L+ N +
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 413 YKSTLGL---VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469
L + L+L SN D E DL L ++L N+L SL
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587
Query: 470 FLDLSRNLFSGSIPCSLS-QLSGLGVLDLSYNNLSGKIPSGTQLQSFN 516
L+L +NL + L LD+ +N S ++
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 3e-54
Identities = 96/460 (20%), Positives = 154/460 (33%), Gaps = 58/460 (12%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
L LK L L L ++ F T++ L L N++ + F
Sbjct: 72 LPMLKVLNLQHNELSQLSDKT---FAFCTNLTELHLMSNSIQK-------IKNNPFVKQK 121
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
+L +L LS + L + +L++L LS NK+ S+ + + +SL+ L
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN----SSLKKLE 177
Query: 194 LRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLS---QLSKLESLSLDGNSLRAI 249
L N P L L+ L ++ + L + + +LSL + L
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 250 SLCILTSPIGISDSIPDWFWDLSN-KLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNL 303
F L L+ L+LS N+ D L + L N
Sbjct: 238 --------------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 304 LSGGLPDCWLHFDRLFILNLANN---------RLSGKIPDSMGFLNNIWTLNLHNNRLTG 354
+ + LNL + L S +L + LN+ +N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 355 KLPSPLRNFSQLRVLDLEKNAI-FGEIPTWIGESLQN--LIVLSLKSNKFHGNIPYQFEN 411
+ L+ L L + + SL + L +L+L NK F
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIP-EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF 470
LG + LDL N++ + +E L + + LS N + SL
Sbjct: 404 -----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Query: 471 LDLSRNLFSG--SIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
L L R S P L L +LDLS NN++
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 5e-53
Identities = 94/432 (21%), Positives = 156/432 (36%), Gaps = 48/432 (11%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+L T+I L+L+ N L L F L SL + + + P+ +
Sbjct: 22 DLPTNITVLNLTHNQLRR-------LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSL 217
LK L L +N+LS + + +L L+L N + +L L
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCT------NLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN-KLS 276
N L+ T + QL L+ L L N ++A+ + +N L
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--------------KSEELDIFANSSLK 174
Query: 277 YLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPD---CWLHFDRLFILNLANNRL 328
L LS+N + P L L++ L L + L + L+L+N++L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 329 SGKIPDSMGFLN--NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386
S + L N+ L+L N L QL LE N I +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH- 293
Query: 387 SLQNLIVLSLKSNKFHGNIPY----QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442
L N+ L+LK + +I + ++ L + L++ N + G L+
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 443 GLIALNLSRNHLTG----PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498
L L+LS + + T + L L+L++N S + S L L VLDL
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 499 YNNLSGKIPSGT 510
N + ++
Sbjct: 414 LNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 1e-51
Identities = 88/429 (20%), Positives = 147/429 (34%), Gaps = 53/429 (12%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLK 160
+ S E D S L + V L ++ L L+ ++L F L
Sbjct: 3 TVSHEVADCSHLKL--TQVPDDLPT--------NITVLNLTHNQLRRLPAANFTRYSQLT 52
Query: 161 KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDV 219
L + +N +S ++ Q L L+ L L+ N+ + ++L L
Sbjct: 53 SLDVGFNTISKLEPELCQKLP------MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 220 NCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279
N + + + L +L L N L + L N L L
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSST--------------KLGTQVQLEN-LQELL 151
Query: 280 LSNNHFRG-------KLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
LSNN + + SL+ +LSSN + P C+ RLF L L N +L +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211
Query: 333 PDSMGF---LNNIWTLNLHNNRLTGKLPSPLRN--FSQLRVLDLEKNAIFGEIPTWIGES 387
+ + +I L+L N++L+ + ++ L +LDL N +
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-W 270
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYK-STLGL---VRCLDLSSNKLDGAIPEEIMDLVG 443
L L L+ N + + L L +S L L
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 444 LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLS----QLSGLGVLDLSY 499
L LN+ N + G + L +L +L LS + S + + S L +L+L+
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 500 NNLSGKIPS 508
N +S
Sbjct: 391 NKISKIESD 399
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-26
Identities = 53/246 (21%), Positives = 83/246 (33%), Gaps = 30/246 (12%)
Query: 275 LSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334
+ S+ ++PD DL +N+ LNL +N+L
Sbjct: 6 HEVADCSHLKLT-QVPD------DLPTNITV---------------LNLTHNQLRRLPAA 43
Query: 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVL 394
+ + + +L++ N ++ P + L+VL+L+ N + NL L
Sbjct: 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTEL 102
Query: 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL 454
L SN F + LDLS N L + L L L LS N +
Sbjct: 103 HLMSNSIQKIKNNPFVK-----QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157
Query: 455 TG--PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQL 512
I +SL L+LS N P + L L L+ L + L
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 513 QSFNAS 518
+ N S
Sbjct: 218 ELANTS 223
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 5e-53
Identities = 83/542 (15%), Positives = 170/542 (31%), Gaps = 64/542 (11%)
Query: 10 SNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFETSNINTFFLNTVSVTKSSDWFQ 69
+++ F + + R+ + + S + +
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
Query: 70 VVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK-- 127
+ S + V+ + L T + + ++ + ++ N
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAV---MRL-TKLRQFYMGNSPFVAENICEAWENENSE 233
Query: 128 ----------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG--QYSQ 175
+ ++ L + + + +P F + ++ + ++ N+ Q
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293
Query: 176 VIQNLSFGCVVNSLEGLYLRWNDF-TGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQL 233
Q L+ V ++ +Y+ +N+ T P+ L L N L G + +
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352
Query: 234 SKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL- 292
KL SL+L N + IP F + ++ L+ ++N + +P++
Sbjct: 353 IKLASLNLAYNQI---------------TEIPANFCGFTEQVENLSFAHNKLKY-IPNIF 396
Query: 293 ------SLRFDDLSSNLLSG-------GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339
+ D S N + L + +NL+NN++S +
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 340 NNIWTLNLHNNRLTG-------KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392
+ + ++NL N LT +N L +DL N + + +L L+
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516
Query: 393 VLSLKSNKFHGNIPYQFENEYK-STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451
+ L N F P Q N G+ D N+ PE I L L +
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575
Query: 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQ 511
N + + KI ++ LD+ N + G+ L Y+ I
Sbjct: 576 NDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDA 631
Query: 512 LQ 513
L
Sbjct: 632 LD 633
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-49
Identities = 54/492 (10%), Positives = 135/492 (27%), Gaps = 68/492 (13%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
+ + S +F+ + + + N+ P K+ +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-----KSSRI 181
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ + + + + K + L++ + + +
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN----------- 229
Query: 192 LYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI- 249
+ L + + L L +++ +++ N +
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 250 ----SLCILTSPIGISD--------------SIPDWFWDLSNKLSYLNLSNNHFRGKLPD 291
L + + L L N GKLP
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGKLPA 348
Query: 292 L----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD--SMGFLNNIWTL 345
L +L+ N ++ + +++ L+ A+N+L IP+ ++ + +
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI 407
Query: 346 NLHNNRLTG-------KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398
+ N + L + ++L N I + L ++L
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS-TGSPLSSINLMG 466
Query: 399 NKFHGNIPYQFENEYKSTLGLV--RCLDLSSNKLDGAIPEEIMD--LVGLIALNLSRNHL 454
N ++E ++ +DL NKL + ++ L L+ ++LS N
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF 525
Query: 455 TGPITPKIGELTSL------DFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
+ + ++L + D N P ++ L L + N++ +
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583
Query: 509 G--TQLQSFNAS 518
+ +
Sbjct: 584 KITPNISVLDIK 595
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 7e-48
Identities = 60/409 (14%), Positives = 126/409 (30%), Gaps = 49/409 (11%)
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
+ L L G +P G + L+ L L + + S E
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM--SDEQKQ 139
Query: 194 LRWNDFTGPIPHLGG---FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS 250
+ FS L ++ + +I KS K + N++
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI---- 195
Query: 251 LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPD 310
+ L+ L + N+ F + + ++
Sbjct: 196 -----------TFVSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT--------GKLPSPLRN 362
W + L + + N K+P + L + +N+ NR + +
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 363 FSQLRVLDLEKNAIF-GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVR 421
+++++ + N + + T + ++ L +L N+ G +P F +E K L
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIK----LAS 357
Query: 422 CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSG 480
L+L+ N++ + L+ + N L P ++ + +D S N
Sbjct: 358 -LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 481 -------SIPCSLSQLSGLGVLDLSYNNLSGKIPS----GTQLQSFNAS 518
+ + + + ++LS N +S G+ L S N
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 1e-47
Identities = 67/450 (14%), Positives = 139/450 (30%), Gaps = 64/450 (14%)
Query: 71 VAKLHSLKSLVLFSCALP-PVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAF 129
+ +L L+ L L S + + S E + + ++
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF-----VDYDPR 155
Query: 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSL 189
+ L ++ + I K ++ N ++ S+ + L+ L
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT------KL 208
Query: 190 EGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI 249
Y+ + F + E + + T D L L + +
Sbjct: 209 RQFYMGNSPFVAENI----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN--- 261
Query: 250 SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP 309
+P + L + +N++ N
Sbjct: 262 -----------LTKLPTFLKALPE-MQLINVACNRGIS-----------GEQLKDDWQAL 298
Query: 310 DCWLHFDRLFILNLANNRL-SGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
+++ I+ + N L + + S+ + + L N+L GKLP+ + +L
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLAS 357
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSN 428
L+L N I EIP + + LS NK IP F+ + S + +D S N
Sbjct: 358 LNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVM---SAIDFSYN 412
Query: 429 KLDG-------AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG- 480
++ + + + ++NLS N ++ + L ++L N+ +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Query: 481 ------SIPCSLSQLSGLGVLDLSYNNLSG 504
+ L +DL +N L+
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-37
Identities = 45/339 (13%), Positives = 108/339 (31%), Gaps = 45/339 (13%)
Query: 206 LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265
L + SL+ +G + ++ QL++LE L+L + + I + S
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-- 134
Query: 266 DWFWDLSNKLSYLNLSNNHFRGKLPD-------LSLRFDDLSSNLLSGGLPDCWLHFDRL 318
H++ D L D ++S+ + +
Sbjct: 135 ---------DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK-------------------LPSP 359
+ +N ++ + ++ L + + N+ +
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
N L +++ ++PT++ +L + ++++ N+ + + + + +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 420 VRCL---DLSSNKL-DGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475
+ + N L + + + L L N L G + P G L L+L+
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAY 362
Query: 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
N + + L ++N L IP+ +S
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 5e-21
Identities = 25/207 (12%), Positives = 65/207 (31%), Gaps = 24/207 (11%)
Query: 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVL 394
S+ + L+L +G++P + ++L VL L + + + + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL 454
K + + + + ++S+ +I + + + N++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPC-------------------SLSQLSGLGVL 495
T ++ + LT L + + F C L L +
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254
Query: 496 DLSYNNLSGKIPSG----TQLQSFNAS 518
++ K+P+ ++Q N +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVA 281
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 8e-51
Identities = 96/483 (19%), Positives = 163/483 (33%), Gaps = 68/483 (14%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
L SL+ LV L + I H +++ L+++ N + S + + F ++
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKL------PEYFSNLT 149
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVNSL 189
+L+ L LS ++++ + + L LS N ++ + + L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-------L 202
Query: 190 EGLYLRWNDFTGPIPH--LGGFSSLEAWSLDVNCLNGTI---DKSLSQLSKLESLSLDGN 244
L LR N + + + G + LE L + S L L +L+++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 245 SLRAISLCILTSPIGISDSIPDWFWDLSN---------------------KLSYLNLSNN 283
L + D I D F L+N +L L N
Sbjct: 263 RLAYLDY--------YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 284 HFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS--GKIPDSMGFLNN 341
F L+ GG + L L+L+ N LS G S +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ L+L N + + S QL LD + + + + SL+NLI L +
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM-DLVGLIALNLSRNHLTGPITP 460
F L + L ++ N +I +L L L+LS+ L
Sbjct: 434 RVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 461 KIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS-----GTQLQSF 515
L+SL L++S N F L+ L VLD S N++ + L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 516 NAS 518
N +
Sbjct: 549 NLT 551
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 5e-47
Identities = 91/472 (19%), Positives = 167/472 (35%), Gaps = 42/472 (8%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQ 130
+ L +L+ L L S + + + + + +LDLS N + + AF+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------IQPGAFK 198
Query: 131 HMVSLKSLYLSDSELEGGIPK-FFGNMCSLKKLRLSYNKLSG--QYSQVIQNLSFGCVVN 187
+ L L L ++ + K + L+ RL + + ++ G
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 188 SLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS 245
++E L + D+ +++ ++SL + D S + L L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315
Query: 246 LRAISLCILTSPI-----GISDSIPDWFWDLSNKLSYLNLSNNH--FRGKLPDL-----S 293
L S DL + L +L+LS N F+G S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRL 352
L++ DLS N + + +L ++L L+ ++ L S+ L N+ L++ +
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 353 TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE 412
S L VL + N+ I L+NL L L + P F +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS- 492
Query: 413 YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGEL-TSLDFL 471
L ++ L++S N L L L+ S NH+ ++ +SL FL
Sbjct: 493 ----LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 472 DLSRNLFSGSIPCS--LSQLSGLGVLDLSYNNLSGKIPS---GTQLQSFNAS 518
+L++N F+ + L + L + + PS G + S N +
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 5e-45
Identities = 89/444 (20%), Positives = 144/444 (32%), Gaps = 63/444 (14%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
NL S + LDLS N L L +F L+ L LS E++ + ++
Sbjct: 25 NLPFSTKNLDLSFNPLRH-------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSL 217
L L L+ N + LS SL+ L + +G +L+ ++
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 218 DVNCLNGT-IDKSLSQLSKLESLSLDGNSLRAI------SLCILTSPIG--------ISD 262
N + + + S L+ LE L L N +++I L + ++
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS------LRFDDLSSNLLSGGLPDCWL--- 313
P F ++ L L L NN + L L
Sbjct: 192 IQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 314 HFDRLFILNLANNRLS------GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR 367
+ L L + RL+ I D L N+ + +L + + +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQ 307
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
L+L FG+ PT +SL+ L S K + L + LDLS
Sbjct: 308 HLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD----------LPSLEFLDLSR 356
Query: 428 NKLD--GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS 485
N L G + L L+LS N + ++ L L+ LD + S
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 486 -LSQLSGLGVLDLSYNNLSGKIPS 508
L L LD+S+ +
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 6e-44
Identities = 82/467 (17%), Positives = 148/467 (31%), Gaps = 62/467 (13%)
Query: 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSL 135
S K+L L L + + F ++ LDLS + + A+Q + L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEI-------QTIEDGAYQSLSHL 78
Query: 136 KSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLR 195
+L L+ + ++ F + SL+KL L+ + I +L +L+ L +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVA 132
Query: 196 WNDFTGPIPH--LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLE----SLSLDGNSLRAI 249
N ++LE L N + L L ++ SL L N + I
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 250 SLCILTSPI---------GISDSIPDWFWDLSNKLSYLNLSNNHFRG------------- 287
S ++ L L FR
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 288 KLPDLSLRFDDLSS-NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346
L +L++ L+ + + D + + +L + + S + L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLE 310
Query: 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK--FHGN 404
L N + L++ +L + F E+ L +L L L N F G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGC 364
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-G 463
++ LDLS N + + + L L L+ ++L +
Sbjct: 365 CSQSDFG-----TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 464 ELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
L +L +LD+S + + LS L VL ++ N+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 5e-35
Identities = 80/431 (18%), Positives = 142/431 (32%), Gaps = 64/431 (14%)
Query: 31 NIERLQELVLGLGKFFETSNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPV 90
+ L+ L LG+F N+ F + + L +L L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALE------------GLCNLTIEEFRLAYLDYY 270
Query: 91 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK----------AFQHMVSLKSLYL 140
I FN T++ + L + + + + F + L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 141 SDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT 200
+ + +GG ++ SL+ L LS N LS + FG SL+ L L +N
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGT--TSLKYLDLSFNGVI 386
Query: 201 GPIPHLGGFSSLEAWSLDVNCLNGTIDKS-LSQLSKLESLSLDGNSLRAISLCILTSPIG 259
+ G LE + L + S L L L + R
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---------- 436
Query: 260 ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLF 319
F LS+ L L ++ N F+ PD + L
Sbjct: 437 ----FNGIFNGLSS-LEVLKMAGNSFQENFL------------------PDIFTELRNLT 473
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
L+L+ +L P + L+++ LN+ +N P + + L+VLD N I
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
+ +L L+L N F +Q + + R L + +++ A P +
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQ---SFLQWIKDQRQLLVEVERMECATPSDKQ 590
Query: 440 DLVGLIALNLS 450
+ +++LN++
Sbjct: 591 GMP-VLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 55/250 (22%), Positives = 83/250 (33%), Gaps = 14/250 (5%)
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDR 317
IPD +L L+LS N R L+ DLS + +
Sbjct: 21 KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377
L L L N + + L+++ L L P+ + L+ L++ N I
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEE 437
+L NL L L SNK ++ L + LDLS N ++ P
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGA 196
Query: 438 IMDLVGLIALNLSRNHLTGPITPK-IGELTSLDFLDLSRNLFSGSIPC---SLSQLSGLG 493
++ L L L N + + I L L+ L F S L GL
Sbjct: 197 FKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 494 VLDLSYNNLS 503
L + L+
Sbjct: 256 NLTIEEFRLA 265
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
+IP + S +NL L N Y F + ++ LDLS ++
Sbjct: 21 KIPDNLPFSTKNL---DLSFNPLRHLGSYSFFS-----FPELQVLDLSRCEIQTIEDGAY 72
Query: 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498
L L L L+ N + L+SL L + + L L L+++
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 499 YNNLSG 504
+N +
Sbjct: 133 HNLIQS 138
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-49
Identities = 92/458 (20%), Positives = 156/458 (34%), Gaps = 45/458 (9%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
+S + L LP + + ++ LDL+ + + ++ FQ
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQI-------YWIHEDTFQSQH 81
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
L +L L+ + L +LK L +S + N +LE LY
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK------TLESLY 135
Query: 194 LRWNDFTG-PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLD--GNSLRAIS 250
L N + +P L+ N ++ + +S L + +LSL+ GN + I
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 251 LCILTSP------IGISDSIPDWFWDLSN----KLSYLNLSNNHFR-------GKLPDLS 293
S G + ++ F L N L + L ++S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
+ +L + + + F L L+L LS ++P + L+ + L L N+
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314
Query: 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH--GNIPYQFEN 411
NF L L ++ N E+ T E+L+NL L L + Q N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELTSLDF 470
L ++ L+LS N+ E + L L+L+ L L L
Sbjct: 375 -----LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
L+LS +L S L L L+L N+
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 1e-44
Identities = 76/425 (17%), Positives = 137/425 (32%), Gaps = 47/425 (11%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
L S E L+ S N LP+ + F +++L L L+ ++ F +
Sbjct: 30 TLPNSTECLEFSFNVLPT-------IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSL 217
L L L+ N L + +L+ L+ + L +LE+ L
Sbjct: 83 LDTLVLTANPLIFMAETALSGPK------ALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN-KLS 276
N ++ KL+ L N++ +S + L
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS--------------KEDMSSLQQATNL 182
Query: 277 YLNLSNNHF----RGKLPDLSLRFDDLSSNLLSGGLPD--CWLHFDRLFILNLANNRLSG 330
LNL+ N G + + + L++ +
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 331 KIPDSMGFL--NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESL 388
P L ++ ++NL + + FS L+ LDL + E+P+ + L
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLV-GL 300
Query: 389 QNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM-DLVGLIAL 447
L L L +NKF N + L + N + + +L L L
Sbjct: 301 STLKKLVLSANKFENLCQISASN-----FPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 448 NLSRNHLT--GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
+LS + + ++ L+ L L+LS N + + L +LDL++ L K
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Query: 506 IPSGT 510
Sbjct: 416 DAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-42
Identities = 87/470 (18%), Positives = 157/470 (33%), Gaps = 67/470 (14%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
+LK L + ++ + ++E+L L N++ S + L
Sbjct: 104 PKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSNHISS-------IKLPKGFPTE 153
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLK--KLRLSYNKLSGQYSQVIQNLSF--------- 182
LK L ++ + + ++ L L+ N ++G + F
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 183 ----------GCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDV--NCLNGTIDKS 229
+ SL D P G + S+++ + +
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289
S L+ L L L +P LS L L LS N F
Sbjct: 274 FHCFSGLQELDLTATHLS---------------ELPSGLVGLST-LKKLVLSANKFENLC 317
Query: 290 PDL-----SLRFDDLSSNLLSGGLPDCWL-HFDRLFILNLANNRLSGKIPDSMGF--LNN 341
SL + N L L + + L L+L+++ + ++ L++
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ +LNL N + QL +LDL + + ++L L VL+L +
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALNLSRNHLTGPI 458
+ F+ L ++ L+L N + L L L LS L+
Sbjct: 438 DISSEQLFDG-----LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 459 TPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
L ++ +DLS N + S +LS L G+ L+L+ N++S +PS
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-41
Identities = 86/407 (21%), Positives = 137/407 (33%), Gaps = 49/407 (12%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC--S 158
S ++L+ + SL D + E P F +C S
Sbjct: 201 SAVFQSLNFGGTQNLLVI-----FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
++ + L + S S L+ L L + L G S+L+ L
Sbjct: 256 VESINLQKHYFFNISSNTFHCFS------GLQELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
N S S L LS+ GN+ + +L N L L
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTK-------------RLELGTGCLENLEN-LREL 355
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
+LS++ +L+ +LS L LNL+ N ++
Sbjct: 356 DLSHDDIE-TSDCCNLQLRNLSH----------------LQSLNLSYNEPLSLKTEAFKE 398
Query: 339 LNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397
+ L+L RL K SP +N L+VL+L + + + + L L L+L+
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQ 457
Query: 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP 457
N F + TLG + L LS L L + ++LS N LT
Sbjct: 458 GNHFPKGNI--QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 458 ITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504
+ L + +L+L+ N S +P L LS ++L N L
Sbjct: 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 9e-32
Identities = 72/405 (17%), Positives = 133/405 (32%), Gaps = 48/405 (11%)
Query: 31 NIERLQELVLGLGK---------FFETSNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLV 81
++++ L L L F+++ + + + SL
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 82 LFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLS 141
++P+ S+E+++L + + ++ F L+ L L+
Sbjct: 235 FEDMDDEDISPAVFEGLCE-MSVESINLQKHYFFN-------ISSNTFHCFSGLQELDLT 286
Query: 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG 201
+ L +P + +LKKL LS NK N SL L ++ N
Sbjct: 287 ATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFP------SLTHLSIKGNTKRL 339
Query: 202 PIP--HLGGFSSLEAWSLDVNCLN--GTIDKSLSQLSKLESLSLDGNSLRAISLCILTSP 257
+ L +L L + + + L LS L+SL+L N ++
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 258 IG----------ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSN 302
+ + + L LNLS++ L +L+ +L N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 303 LLSGGLPDCWLHF---DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP 359
G RL IL L+ LS + L + ++L +NRLT
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L + + L+L N I +P+ + L ++L+ N
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLP-ILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-20
Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 11/206 (5%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
N N L+ +IP N+ L N L + L LDL + I+
Sbjct: 16 TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
S L L L +N ++ L + +
Sbjct: 73 HEDTFQ-SQHRLDTLVLTANPLIFMAETALSG-----PKALKHLFFIQTGISSIDFIPLH 126
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV--LDL 497
+ L +L L NH++ PK L LD N +S L L+L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 498 SYNNLSGKIPSGTQLQSFNASVYAGN 523
+ N+++G P F + + G
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGT 212
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLS 426
+ + E + EIP + S + L N F L + LDL+
Sbjct: 15 KTYNCENLGLN-EIPGTLPNSTE---CLEFSFNVLPTIQNTTFSR-----LINLTFLDLT 65
Query: 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486
++ + L L L+ N L + +L L + S L
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125
Query: 487 SQLSGLGVLDLSYNNLSGKIPS 508
L L L N++S
Sbjct: 126 HNQKTLESLYLGSNHISSIKLP 147
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 4e-47
Identities = 67/440 (15%), Positives = 139/440 (31%), Gaps = 61/440 (13%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNL------------KAFQHMVSLKSLYLSDSELEGGI 149
T ++ + +++ ++ + ++ ++ L + L + +
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507
Query: 150 PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV---NSLEGLYLRWNDFTG--PIP 204
P F ++ L+ L ++ N+ ++ Y+ +N+
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567
Query: 205 HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSI 264
L L N + ++ KL L LD N + + I
Sbjct: 568 SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQI---------------EEI 610
Query: 265 PDWFWDLSNKLSYLNLSNNHFRGKLPDL-------SLRFDDLSSNLLSG-----GLPDCW 312
P+ F ++++ L S+N + +P++ + D S N +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT-------GKLPSPLRNFSQ 365
+ L+ N + + + I T+ L NN +T +N
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK-STLGLVRCLD 424
L +DL N + + +L L + + N F P Q N + G+ D
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788
Query: 425 LSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN-LFSGSIP 483
N++ P I LI L + N + + K+ L LD++ N S +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVT 845
Query: 484 CSLSQLSGLGVLDLSYNNLS 503
+ G+ L Y+
Sbjct: 846 SVCPYIE-AGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 1e-42
Identities = 58/413 (14%), Positives = 118/413 (28%), Gaps = 57/413 (13%)
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
+ + L L+ +G +P G + LK L + + FG
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR------LFGDEEL 371
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
+ + R + + D+ + + + K +SL +
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 248 AISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGG 307
++ I I L+ L + +N+ F + +
Sbjct: 432 NLTNRI--------TFISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Query: 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG---------KLPS 358
W + L + L N ++PD + L + +LN+ NR +L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG--------------- 403
++++ + N + + + + L +L NK
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602
Query: 404 ------NIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE--EIMDLVGLIALNLSRNHLT 455
IP F V L S NKL IP + + +++ S N +
Sbjct: 603 DYNQIEEIPEDFCA----FTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 456 G-----PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
+ + + + LS N + S + + LS N ++
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 1e-41
Identities = 63/437 (14%), Positives = 126/437 (28%), Gaps = 60/437 (13%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELE-GGIPKFFGNM 156
+ + DL + + + P + +K +SLK + + I K +
Sbjct: 392 LDYDQRLNLSDLLQDAINRN---PEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRL 447
Query: 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAW 215
L+ + + + + + E + L
Sbjct: 448 TKLQIIYFANSPFTY-----------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496
Query: 216 SLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275
L + L L +L+SL++ N + + + D +
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA-----QLKADWTRLADDEDTGPK-I 550
Query: 276 SYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
+ N+ P S + L +L+ +N++ ++
Sbjct: 551 QIFYMGYNNLEE-FPA-SASLQKMVK----------------LGLLDCVHNKVR--HLEA 590
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG-ESLQNLIVL 394
G + L L N++ Q+ L N + IP +S+ + +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSV 649
Query: 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL 454
NK + + LS N++ E + + LS N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 455 T-------GPITPKIGELTSLDFLDLSRNLFSGSIP--CSLSQLSGLGVLDLSYNNLSGK 505
T P L +DL N + S+ + L L +D+SYN S
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767
Query: 506 IPSG----TQLQSFNAS 518
P+ +QL++F
Sbjct: 768 FPTQPLNSSQLKAFGIR 784
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-29
Identities = 45/352 (12%), Positives = 108/352 (30%), Gaps = 49/352 (13%)
Query: 184 CVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG 243
+ E L + + + S ++ +++ L ++ LSL G
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332
Query: 244 NSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP-----DLSLRFDD 298
G +PD L+ L L+ + +L+ +
Sbjct: 333 F--------------GAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 299 LSSNLLSGGLPDCWLHFD-RLFILNLANNRLS-----GKIPDSMGFLNNIWTLNLHNNRL 352
+ + +L +D RL + +L + ++ I + NR+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 353 TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE 412
T + ++ ++L+++ + + + + K + N + N
Sbjct: 438 TF-ISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSN- 489
Query: 413 YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP---------ITPKIG 463
L + ++L + +P+ + DL L +LN++ N +
Sbjct: 490 ----LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 464 ELTSLDFLDLSRNLFSG-SIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+ + N SL ++ LG+LD +N + + +
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-41
Identities = 78/458 (17%), Positives = 140/458 (30%), Gaps = 64/458 (13%)
Query: 99 NLSTSIETLDLSDNNLPS--SSVYPWLLNLK---------------AFQHMVSLKSLYLS 141
++ +S + +DLS N L S + L+ A+ + L +L L+
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88
Query: 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG 201
+ ++ P F + SL+ L KL+ S I L +L+ L + N
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHS 142
Query: 202 --PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL----ESLSLDGNSLRAISLCILT 255
+ ++L L N + L L + SL + N + I
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 256 SP---------IGISDSIPDWFWDLSNKLSYLNLSNNHFRG-------------KLPDLS 293
S +I L L F+ L D++
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
+ L+ + + ++LA + + + +L++ +L
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK 320
Query: 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY 413
P + L+ L L N +L +L L L N + + +
Sbjct: 321 Q---FPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK-IGELTSLDFLD 472
++L R LDLS N + M L L L+ + L L L +LD
Sbjct: 375 TNSL---RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430
Query: 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
+S L+ L L ++ N+ S
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 5e-41
Identities = 93/462 (20%), Positives = 154/462 (33%), Gaps = 52/462 (11%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
LH L +L+L + +P F+ TS+E L + L L ++
Sbjct: 79 LHHLSNLILTGNPIQSFSPG---SFSGLTSLENLVAVETKL-------ASLESFPIGQLI 128
Query: 134 SLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
+LK L ++ + + +P +F N+ +L + LSYN + +Q L L
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE--NPQVNLSL 186
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDK-SLSQLSKLESLSLDGNSLRAI-- 249
+ N L +L N + I K L L+ L L +
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246
Query: 250 ----------SLCILT------SPIGISDSIPDWFWDLSNKLSYLNLSNNHFR---GKLP 290
LC +T + F L+N +S ++L+ +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSIKYLEDVPK 305
Query: 291 DLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN 350
+ + L P L L L L N+ S I L ++ L+L N
Sbjct: 306 HFKWQSLSIIRCQLKQ-FPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRN 360
Query: 351 RLTGKLPSPLRNF--SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
L+ + + LR LDL N I + L+ L L + + +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 409 -FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELT 466
F + L + LD+S + L L L ++ N + T
Sbjct: 419 AFLS-----LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
+L FLDLS+ L L +L++S+NNL S
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 5e-40
Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 47/444 (10%)
Query: 72 AKLHSLKSLVLFSCALPPVNP-SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQ 130
+ L +L + L + + + +LD+S N + + +AFQ
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-------IQDQAFQ 202
Query: 131 HMVSLKSLYLSDSELEGGIPK-FFGNMCSLKKLRLSYNKLSGQYS-QVIQNLSFGCVVN- 187
+ L L L + I K N+ L RL + + + ++ + + +
Sbjct: 203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 188 SLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
+++ L + + +++ ++ + ++ + + + K +SLS+ L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVS--AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 247 RAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNL 303
+ DL L L L+ N + SL + DLS N
Sbjct: 320 KQFP-----------------TLDLPF-LKSLTLTMNKGSISFKKVALPSLSYLDLSRNA 361
Query: 304 LSGGLPDC---WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SP 359
LS C L + L L+L+ N + + L + L+ ++ L S
Sbjct: 362 LSF-SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
+ +L LD+ I L +L L + N F N +
Sbjct: 420 FLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN---- 474
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
+ LDLS +L+ L L LN+S N+L + +L SL LD S N
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 480 GSIPCSLSQLSGLGVLDLSYNNLS 503
S L +L+ N+++
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 1e-36
Identities = 74/441 (16%), Positives = 128/441 (29%), Gaps = 62/441 (14%)
Query: 101 STSIETLDLSDNNLPS--SSVYPWLLNL------------KAFQHMVSLKSLYLSDSELE 146
T D L + N+ +F + L+ L LS E+E
Sbjct: 10 VVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 147 GGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH- 205
K + + L L L+ N + L+ SLE L
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT------SLENLVAVETKLASLESFP 123
Query: 206 LGGFSSLEAWSLDVNCLNG-TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSI 264
+G +L+ ++ N ++ + S L+ L + L N ++ I++ L
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL---------- 173
Query: 265 PDWFWDLSNKLSYLNLSNNHFR----GKLPDLSLRFDDLSSNLLSGGLP-DCWLHFDRLF 319
+ + L++S N + L L N S + C + L
Sbjct: 174 -QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232
Query: 320 ILNLANNRLSG----KIPDSMGFLN----NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
+ L +I + I L + + + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292
Query: 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431
+I + LS+ + ++ L L+ NK
Sbjct: 293 AGVSIK-YLEDVPKHF--KWQSLSIIRCQLKQFPTLDLPF--------LKSLTLTMNKGS 341
Query: 432 GAIPEEIMDLVGLIALNLSRNHLT--GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL 489
I + + L L L+LSRN L+ G + SL LDLS N + + L
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398
Query: 490 SGLGVLDLSYNNLSGKIPSGT 510
L LD ++ L
Sbjct: 399 EELQHLDFQHSTLKRVTEFSA 419
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 357 PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKST 416
+P + ++P I S + + L N Y F N
Sbjct: 4 LNPCIEVVPNITYQCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSN----- 54
Query: 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476
++ LDLS +++ + L L L L+ N + LTSL+ L
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
+ + QL L L++++N +
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-34
Identities = 107/483 (22%), Positives = 180/483 (37%), Gaps = 68/483 (14%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
L++ + L+L + V S F ++ L+L P + ++ +AF+++
Sbjct: 23 LNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLT------IDKEAFRNLP 73
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
+L+ L L S++ P F + L +LRL + LS V+++ F + L L
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKA-LTRLD 129
Query: 194 LRWNDFT--GPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLS--KLESLSLDGNSL--- 246
L N P G +SL++ N + + L L L SL NSL
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 247 ------------RAISLCILT-SPIGISDSIPDWFWD-----------LSNKLSYLNLSN 282
R + L IL S G + I F + L++ +
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249
Query: 283 NHFR-------GKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
++ + L S+R DLS + + L +LNLA N+++ ++
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395
L+N+ LNL N L S ++ +DL+KN I I + L+ L L
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLD 368
Query: 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455
L+ N + + + LS NKL +P+ + ++LS N L
Sbjct: 369 LRDNALTTI----------HFIPSIPDIFLSGNKL-VTLPKINLT---ANLIHLSENRLE 414
Query: 456 G-PITPKIGELTSLDFLDLSRNLFSG-SIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQ 513
I + + L L L++N FS S + S+ L L L N L +
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 514 SFN 516
F
Sbjct: 475 VFE 477
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 9e-33
Identities = 114/600 (19%), Positives = 198/600 (33%), Gaps = 65/600 (10%)
Query: 21 LINLGQHLEVNIERLQELVLGLGKFFETSNINTFFL--NTVSVTKSSDWFQVVAKLHSLK 78
L +L L + L + VL G F + L N + F KL+SLK
Sbjct: 96 LFHL-FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG---KLNSLK 151
Query: 79 SLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSL 138
S+ S + V + ++ L+ N+L S W + F++M L+ L
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEIL 209
Query: 139 YLSDSELEGGIPKFFGN------------MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186
+S + I F N + ++ + L+
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR---- 265
Query: 187 NSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNS 245
+S+ L L L+ +L N +N D++ L L+ L+L N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 246 LRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLS 300
L + F+ L ++Y++L NH L+ DL
Sbjct: 326 LGELY--------------SSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 301 SNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSP 359
N L+ + + L+ N+L +P N ++L NRL +
Sbjct: 371 DNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTAN---LIHLSENRLENLDILYF 421
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
L L++L L +N +L L L N + + L
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479
++ L L+ N L+ P L L L+L+ N LT +L+ LD+SRN
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLL 539
Query: 480 GSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEE 539
P LS VLD+++N + +L +F + N+ + G P C+ +
Sbjct: 540 APNPDVFVSLS---VLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPD 592
Query: 540 STPG-PGTDDDSDTLEDEDDQFITLGFYVSSILSFFVGFWGVSGTLMLNRSWSYGYFNFL 598
S G ++ ++E+ F T+ R + + +
Sbjct: 593 SFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTA 652
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 84/433 (19%), Positives = 143/433 (33%), Gaps = 71/433 (16%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLK 160
S NL + V Q + + + L LS + + F + L+
Sbjct: 3 SFDGRIAFYRFCNL--TQV---------PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQ 51
Query: 161 KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-PIPHLGGFSSLEAWSLDV 219
L L I +F + N L L L + G L L
Sbjct: 52 LLELGSQYTPLT----IDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106
Query: 220 NCLNGTI--DKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
L+ + D L L L L N +R++ L F L++ L
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-------------HPSFGKLNS-LKS 152
Query: 278 LNLSNNHFRG-------KLPDLSLRFDDLSSNLLSGGLPDCW------LHFDRLFILNLA 324
++ S+N L +L F L++N L + W L IL+++
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212
Query: 325 NNRLSGKIPD------------SMGFLNNIWTLNLHNNRLTGKLPSPLRNF--SQLRVLD 370
N + I S+ ++I + + + S +R LD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 371 LEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL 430
L +F + + + E+L++L VL+L NK + F L ++ L+LS N L
Sbjct: 273 LSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-----LDNLQVLNLSYNLL 326
Query: 431 DGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490
L + ++L +NH+ L L LDL N + ++ +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIP 381
Query: 491 GLGVLDLSYNNLS 503
+ + LS N L
Sbjct: 382 SIPDIFLSGNKLV 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 9e-17
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
I L+ ++P LN L L N + S QL++L+L
Sbjct: 8 IAFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
I +L NL +L L S+K + P F+ L + L L L A+ ++
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-----LFHLFELRLYFCGLSDAVLKDGY 118
Query: 440 --DLVGLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSG--LGV 494
+L L L+LS+N + + P G+L SL +D S N L L G L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 495 LDLSYNNLSGKIPSG 509
L+ N+L ++
Sbjct: 179 FSLAANSLYSRVSVD 193
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-33
Identities = 87/436 (19%), Positives = 156/436 (35%), Gaps = 59/436 (13%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
L N+ + + + + +L ++ + +L +
Sbjct: 24 AEKMKTVLGKTNVT---------DTVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
+ S N+L+ ++NL+ L + + N I L ++L +L N
Sbjct: 73 INFSNNQLTD--ITPLKNLT------KLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQ 123
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAIS-------LCILTSPIGISDSIPDWFWDLSNK 274
+ L L+ L L L N++ IS L L+ ++D P +L+
Sbjct: 124 ITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTT- 178
Query: 275 LSYLNLSNNHFRGKLPDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG 330
L L++S+N + L+ L ++N +S P L L L+L N+L
Sbjct: 179 LERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235
Query: 331 KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390
++ L N+ L+L NN+++ +PL ++L L L N I P L
Sbjct: 236 --IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPL---AGLTA 288
Query: 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLS 450
L L L N+ P S L + L L N + P + L L L
Sbjct: 289 LTNLELNENQLEDISP-------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339
Query: 451 RNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
N ++ + LT++++L N S P L+ L+ + L L+ + +
Sbjct: 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395
Query: 511 QLQSFNASVYAGNLEL 526
S +V L
Sbjct: 396 ANVSIPNTVKNVTGAL 411
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 88/415 (21%), Positives = 158/415 (38%), Gaps = 56/415 (13%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ TL + S + +++ +L + S+++L P N+ L
Sbjct: 46 DQVTTLQADRLGIKS---------IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
+ ++ N+++ + NL+ +L GL L N T I L ++L L N
Sbjct: 95 ILMNNNQIAD--ITPLANLT------NLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNT 145
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTS--PIGISD---SIPDWFWDLSNKLS 276
++ +LS L+ L+ LS L LT+ + IS S L+N L
Sbjct: 146 ISDI--SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN-LE 202
Query: 277 YLNLSNNHFRGKLPDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
L +NN + L L L+ N L L L+LANN++S
Sbjct: 203 SLIATNNQISD-ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392
P + L + L L N+++ SPL + L L+L +N + P +L+NL
Sbjct: 260 P--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPI---SNLKNLT 312
Query: 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452
L+L N P S+L ++ L +NK+ + +L + L+ N
Sbjct: 313 YLTLYFNNISDISPV-------SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 363
Query: 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
++ + LT + L L+ ++ + + +S + + N I
Sbjct: 364 QISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVKNVTGALIA 413
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 47/296 (15%)
Query: 229 SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288
+ + L++ L + +T + +D ++++ L +
Sbjct: 19 TDTALAEKMKTVLGKTN--------VTDTVSQTD---------LDQVTTLQADRLGIK-S 60
Query: 289 LPDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWT 344
+ + L + S+N L+ P L +L + + NN+++ P + L N+
Sbjct: 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIADITP--LANLTNLTG 116
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L L NN++T PL+N + L L+L N I +I L +L LS N+
Sbjct: 117 LTLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISAL--SGLTSLQQLSF-GNQVTDL 170
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE 464
P + L + LD+SSNK+ + L L +L + N ++ ITP +G
Sbjct: 171 KPL-------ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-ITP-LGI 219
Query: 465 LTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNAS 518
LT+LD L L+ N +L+ L+ L LDL+ N +S P T+L
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 54/300 (18%), Positives = 114/300 (38%), Gaps = 42/300 (14%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
AKL +L+SL+ + + + P + T+++ L L+ N L ++
Sbjct: 196 AKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQL---------KDIGTLAS 241
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ +L L L+++++ P + L +L+L N++S + L+ +L
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLT------ALTN 291
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS- 250
L L N I + +L +L N ++ +S L+KL+ L N + +S
Sbjct: 292 LELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSS 348
Query: 251 LCILTSPIG-------ISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSS 301
L LT+ ISD P +L+ ++ L L++ + + ++ +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
Query: 302 NLLSGGLPDCWL-HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360
N+ + + ++ N S + + T+ +G + PL
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTL 417
++ L K + + L + L E L
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI--KSIDGVEY-----L 67
Query: 418 GLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477
+ ++ S+N+L P + +L L+ + ++ N + + LT+L L L N
Sbjct: 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQ 123
Query: 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+ P L L+ L L+LS N +S I + + L S
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTS 157
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 8e-33
Identities = 83/403 (20%), Positives = 153/403 (37%), Gaps = 65/403 (16%)
Query: 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLS 165
TL + + + L + + + + S+ KL ++
Sbjct: 4 TLATLPAPIN---------QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVA 52
Query: 166 YNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGT 225
K++ IQ + + + +LE L L N T I L L + N + T
Sbjct: 53 GEKVAS-----IQGIEY---LTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKI--T 101
Query: 226 IDKSLSQLSKLESLSLDGNSLRAIS-LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNH 284
+L L+ L L L+ +++ IS L LT K+ LNL NH
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLANLT------------------KMYSLNLGANH 143
Query: 285 FRGKLPDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340
L L L + ++ + + + L+ L+L N++ P + L
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLT 199
Query: 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
++ + N++T +P+ N ++L L + N I P +L L L + +N+
Sbjct: 200 SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQ 254
Query: 401 FHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITP 460
+I ++ L ++ L++ SN++ + +L L +L L+ N L
Sbjct: 255 IS-DINA-VKD-----LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305
Query: 461 KIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
IG LT+L L LS+N + P L+ LS + D + +
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 64/384 (16%), Positives = 142/384 (36%), Gaps = 78/384 (20%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
+L S+ LV+ + + T++E L+L+ N + + +
Sbjct: 41 EELESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNGNQITD---------ISPLSN 86
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+V L +LY+ +++ N+ +L++L L+ + +S + NL+ +
Sbjct: 87 LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLT------KMYS 136
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
L L N + L + L ++ + + ++ L+ L SLSL+ N + IS
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP 194
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311
L++ L Y N + ++
Sbjct: 195 ----------------LASLTS-LHYFTAYVNQITD-ITPVA------------------ 218
Query: 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
+ RL L + NN+++ P + L+ + L + N+++ + +++ ++L++L++
Sbjct: 219 --NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272
Query: 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431
N I +I +L L L L +N+ L + L LS N +
Sbjct: 273 GSNQI-SDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGG-----LTNLTTLFLSQNHIT 324
Query: 432 GAIPEEIMDLVGLIALNLSRNHLT 455
P + L + + + + +
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 59/292 (20%)
Query: 229 SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288
+ L++ L S+ T + + ++ L ++
Sbjct: 17 PDADLAEGIRAVLQKASV--------TDVVTQEEL---------ESITKLVVAGEKVA-S 58
Query: 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348
+ + + L LNL N+++ P + L + L +
Sbjct: 59 IQGIE--------------------YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG 96
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
N++T S L+N + LR L L ++ I P +L + L+L +N ++
Sbjct: 97 TNKITD--ISALQNLTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHNLSDLS-P 150
Query: 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSL 468
N + + L ++ +K+ P I +L L +L+L+ N + + LTSL
Sbjct: 151 LSN-----MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201
Query: 469 DFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNAS 518
+ N + P ++ ++ L L + N ++ P +QL
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 9e-33
Identities = 88/460 (19%), Positives = 156/460 (33%), Gaps = 53/460 (11%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
+ L SL+ LV L + +++ L+++ N + S + F +
Sbjct: 97 SGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQS------FKLPEYFSN 147
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVN 187
+ +L+ L LS ++++ + + L LS N ++ + +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------ 201
Query: 188 SLEGLYLRWNDFTGPIPH--LGGFSSLEAWSLDVNCLNG-----TIDKS-LSQLSKLESL 239
L L LR N + + + G + LE L + DKS L L L
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 240 SLDGNSLRAISLCILTSPIGISDSIPDWFWDLS----------NKLSYLNLSNNHFRG-- 287
L I+ +++ ++ +L L N F
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 288 KLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS--GKIPDSMGFLNNIWTL 345
L SL+ +SN + L L L+L+ N LS G S ++ L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI 405
+L N + + S QL LD + + + + SL+NLI L +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI-G 463
F L + L ++ N +I L L L+LS+ L ++P
Sbjct: 438 NGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFN 491
Query: 464 ELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
L+SL L+++ N +L+ L + L N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 83/461 (18%), Positives = 144/461 (31%), Gaps = 69/461 (14%)
Query: 99 NLSTSIETLDLSDNNLPS--SSVYPWLLNLK---------------AFQHMVSLKSLYLS 141
NL S + LDLS N L S + L+ A+Q + L +L L+
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT- 200
+ ++ F + SL+KL L+ + I +L +L+ L + N
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQS 138
Query: 201 -GPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLE----SLSLDGNSLRAISLCILT 255
+ ++LE L N + L L ++ SL L N + I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 256 SPI---------GISDSIPDWFWDLSNKLSYLNLSNNHFRG-------------KLPDLS 293
S ++ L L FR L +L+
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 294 LRFDDLSS-NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRL 352
+ L+ + + D + + +L + + ++ D + L L N +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS-YNFGWQHLELVNCKF 316
Query: 353 TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH--GNIPYQFE 410
P L+ L N G + L +L L L N G
Sbjct: 317 GQ---FPTLKLKSLKRLTFTSNKG-GNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 411 NEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTG-PITPKIGELTSLD 469
++ LDLS N + + + L L L+ ++L L +L
Sbjct: 371 G-----TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
+LD+S + + LS L VL ++ N+
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-31
Identities = 91/464 (19%), Positives = 161/464 (34%), Gaps = 48/464 (10%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L L +L+L + + F+ +S++ L + NL S L H
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGA---FSGLSSLQKLVAVETNLAS-------LENFPIGH 122
Query: 132 MVSLKSLYLSDSEL-EGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190
+ +LK L ++ + + +P++F N+ +L+ L LS NK+ Y ++ L +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLLNL 180
Query: 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTI-DKSLSQLSKLESLSLDGNSLRAI 249
L L N P L +L N + + + L+ LE L R
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 250 SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-SLRFDDLSSNLLSGGL 308
+ + + +L+YL+ + L ++ L S +
Sbjct: 241 GN-LEKFDKSALEGLC-NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 309 PDCW-------------------LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHN 349
+ L L L +N+ + L ++ L+L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSR 356
Query: 350 NRLT--GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY 407
N L+ G + L+ LDL N + + + L+ L L + + +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEF 414
Query: 408 QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELT 466
+L + LD+S A L L L ++ N P I EL
Sbjct: 415 SV----FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
+L FLDLS+ P + + LS L VL+++ N L +P G
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGI 513
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-25
Identities = 79/407 (19%), Positives = 151/407 (37%), Gaps = 40/407 (9%)
Query: 69 QVVAKLHSLKSLVLFSCALPPVNP-SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127
+ + L +L+ L L S + + + +LDLS N + +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------IQPG 195
Query: 128 AFQHMVSLKSLYLSDSELEGGIPK-FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186
AF+ + L L L ++ + K + L+ RL + + + + S +
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 187 NSLEGLYLR---WNDFTGPIPHL-GGFSSLEAWSLDVNCLNGTIDKS-LSQLSKLESLSL 241
+L R + + I L +++ ++SL + D S LE ++
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 242 DGNSLRAISLCILT----SPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK-------LP 290
+ L L + ++ DL + L +L+LS N K
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPS-LEFLDLSRNGLSFKGCCSQSDFG 371
Query: 291 DLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF--LNNIWTLNLH 348
SL++ DLS N + + +L ++L L+ ++ L ++ + F L N+ L++
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 429
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
+ S L VL + N+ I L+NL L L + P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHL 454
F + L ++ L+++SN+L ++P+ I D L L + L N
Sbjct: 490 FNS-----LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 59/271 (21%), Positives = 97/271 (35%), Gaps = 17/271 (6%)
Query: 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRL 352
S + DLS N L + F L +L+L+ + + L+++ TL L N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 353 TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF-HGNIPYQFEN 411
S L+ L + + IG L+ L L++ N +P F N
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL----IALNLSRNHLTGPITPKIGELTS 467
L + LDLSSNK+ ++ L + ++L+LS N + I P +
Sbjct: 148 -----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR 201
Query: 468 LDFLDLSRNLFSGSIP-CSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526
L L L N S ++ + L+GL V L + + L+ F+ S G L
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG----EFRNEGNLEKFDKSALEGLCNL 257
Query: 527 CGLPLANMCLDEESTPGPGTDDDSDTLEDED 557
LD + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 4e-18
Identities = 57/331 (17%), Positives = 102/331 (30%), Gaps = 34/331 (10%)
Query: 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI---------SLCILT-SPI 258
S + L N L S +L+ L L ++ I L L +
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 259 GISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLL-SGGLPDCW 312
I F LS+ L L + +L+ +++ NL+ S LP+ +
Sbjct: 87 PIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 313 LHFDRLFILNLANNRLSGKIPDSMGFLNN----IWTLNLHNNRLTGKLPSPLRNFSQLRV 368
+ L L+L++N++ + L+ +L+L N + P + L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSS 427
L L N + + L L V L +F +F+ L + +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 428 NKLDG---AIPEEIMDLVGLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSGSIP 483
LD I + L + + +L + L+ ++ F
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--- 321
Query: 484 CSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+L L L + N S L S
Sbjct: 322 ---LKLKSLKRLTFTSNKGG-NAFSEVDLPS 348
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-32
Identities = 67/404 (16%), Positives = 127/404 (31%), Gaps = 40/404 (9%)
Query: 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188
Q+ K ++DS L+ + + ++K+L LS N LS + + +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------K 59
Query: 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRA 248
LE L L N L S+L L+ N + + L +E+L N++
Sbjct: 60 LELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 249 ISLCILTSPI-------GISDSIPDWFWDLSNKLSYLNLSNN--------HFRGKLPDLS 293
+S I+ S + YL+L N +
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSD--T 170
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
L +L N + + + F +L L+L++N+L+ + + ++L NN+L
Sbjct: 171 LEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF-HGNIPYQFENE 412
+ LR L DL N Q + ++ ++ K G +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 413 YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472
G C DL + D I + L+ + + + +D
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLI---ALKRKEHALLSGQGSETER-LECERENQARQREID 342
Query: 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFN 516
+ + I + L+ L + S +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAE 385
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 58/358 (16%), Positives = 116/358 (32%), Gaps = 63/358 (17%)
Query: 148 GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG 207
I + N K +++ + L + + Q+ +++ L L N +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW------NVKELDLSGNPLSQISA--- 51
Query: 208 GFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267
L+ +KLE L+L N L D
Sbjct: 52 --------------------ADLAPFTKLELLNLSSNVLY---------------ETLD- 75
Query: 268 FWDLSNKLSYLNLSNNHFRGKLPDL-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANN 326
LS L L+L+NN+ + +L S+ ++N +S + + LANN
Sbjct: 76 LESLST-LRTLDLNNNYVQ-ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANN 130
Query: 327 RLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
+++ G + + L+L N + + L L+L+ N I+ ++ +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV- 188
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L L L SNK + +F++ V + L +NKL I + + L
Sbjct: 189 -VFAKLKTLDLSSNKLA-FMGPEFQS-----AAGVTWISLRNNKLV-LIEKALRFSQNLE 240
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
+L N T + + +++ + + + +
Sbjct: 241 HFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 8e-20
Identities = 38/209 (18%), Positives = 74/209 (35%), Gaps = 18/209 (8%)
Query: 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL 366
+ + + +R I + ++ L + N+ L+L N L+ + L F++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLS 426
+L+L N ++ E ESL L L L +N + + L +
Sbjct: 61 ELLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-ELL---------VGPSIETLHAA 107
Query: 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG-SIPCS 485
+N + + G + L+ N +T G + + +LDL N +
Sbjct: 108 NNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 486 LSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+ L L+L YN + +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAK 192
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 2e-17
Identities = 57/408 (13%), Positives = 113/408 (27%), Gaps = 50/408 (12%)
Query: 69 QVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128
Q + S+++L + + V+ S + + L++N + L
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCS------RGQGKKNIYLANNKITM-------LRDLD 139
Query: 129 FQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
++ L L +E++ + + +L+ L L YN + ++ V
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--------DVKGQVVFA 191
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
L+ L L N P + + SL N L I+K+L LE L GN
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
Query: 248 AISLC--------ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR----------GKL 289
+L + T + + + + L
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHN 349
+ L + R ++ + I TL
Sbjct: 311 KRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 350 NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF 409
L ++ + R ++L + E L +L ++ +
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQ--IELQHATEEQSPLQLLRAIVKRY----EEMY 423
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEI--MDLVGLIALNLSRNHLT 455
+ +R D+ +K E L G L L+ + T
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 62/452 (13%), Positives = 121/452 (26%), Gaps = 81/452 (17%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA--- 128
A L+ L L S L +++ TLDL++N + V P + L A
Sbjct: 55 APFTKLELLNLSSNVL-----YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109
Query: 129 ------FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182
K++YL+++++ G ++ L L N++ +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAEL 164
Query: 183 GCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLD 242
++LE L L++N + F+ L+ L N L + + + +SL
Sbjct: 165 AASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222
Query: 243 GNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR-GKLPDL---SLRFDD 298
N L I N L + +L N F G L D + R
Sbjct: 223 NNKLV---------------LIEKALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 299 LSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT----- 353
++ + + + F + + L + L
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHALLSGQGS 323
Query: 354 --GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFEN 411
+L N ++ R +D K + + Q I L
Sbjct: 324 ETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITL----------------- 365
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471
+ LD + L +
Sbjct: 366 ------------EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLR 413
Query: 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
+ + + Q + + D+ + +
Sbjct: 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-32
Identities = 80/464 (17%), Positives = 163/464 (35%), Gaps = 58/464 (12%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L SL+ L L L ++ S+ +S++ L+L N + L F +
Sbjct: 71 YSLGSLEHLDLSDNHLSSLSSSWFGP---LSSLKYLNLMGNPYQT------LGVTSLFPN 121
Query: 132 MVSLKSLYLSDSELEGGIPK-FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190
+ +L++L + + E I + F + SL +L + L SQ ++++ +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR------DIH 175
Query: 191 GLYLRWNDFTGPIP----HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
L L ++ + L LE ++ + S ++ L+ G+ L
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Query: 247 RAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR-----GKLPDLSLRFDDLSS 301
S L + + + +D + + + GK+ +++R +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKL---PS 358
L L + +++ + + N+++ L ++ L+L N + + +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIG--ESLQNLIVLSLKSNKFHGNIPYQFENEYKST 416
+ L+ L L +N + + +L+NL L + N FH +P +
Sbjct: 356 CKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW----- 408
Query: 417 LGLVRCLDLSSNKLDGAIPEEI------------------MDLVGLIALNLSRNHLTGPI 458
+R L+LSS + + I + L L L +SRN L
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK--T 465
Query: 459 TPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
P L + +SRN +L+ L + L N
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 91/457 (19%), Positives = 159/457 (34%), Gaps = 57/457 (12%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
L+ ++++LDLS N + + + +L+ L L S + F ++ S
Sbjct: 23 GLTAAMKSLDLSFNKITY-------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT--GPIPHLGGFSSLEAWS 216
L+ L LS N LS S LS SL+ L L N + G ++L+
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLS------SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 217 LDVNCLNGTIDK-SLSQLSKLESLSLDGNSLRAISLCILTSPIGIS---------DSIPD 266
+ I + + L+ L L + SLR L S I + +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 267 WFWDLSNKLSYLNLSNNH--------FRGKLPDLSLRFDDLSSNLLSGG-------LPDC 311
F D+ + + YL L + + ++ ++L+ L
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249
Query: 312 WLHFDRLFILNLANNRLSGKIPDSMGFLN--------NIWTLNLHNNRLTGKLPSPLRNF 363
L + + N L P ++ I L++ L L +
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309
Query: 364 SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423
+++ + +E + +F +P + L++L L L N K ++ L
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC--KGAWPSLQTL 366
Query: 424 DLSSNKLD--GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481
LS N L E ++ L L +L++SRN P+ + FL+LS
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424
Query: 482 IPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNAS 518
+ + L VLD+S NNL +LQ S
Sbjct: 425 VKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYIS 459
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 9e-30
Identities = 77/451 (17%), Positives = 144/451 (31%), Gaps = 56/451 (12%)
Query: 98 FNLSTSIETLDLSDNNLPS--SSVYPWLLNLK---------------AFQHMVSLKSLYL 140
+++ L L + + + + L +L+ F + SLK L L
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 141 SDSEL-EGGIPKFFGNMCSLKKLRLS-YNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND 198
+ G+ F N+ +L+ LR+ S L+ SL L ++
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT------SLNELEIKALS 159
Query: 199 FTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSP 257
L + +L ++ ++ LS + L L +L L
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219
Query: 258 IGISD---------SIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSL-RFDDLSSNLLSGG 307
S + D ++ KL L + + D +L D + +
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV--EFDDCTLNGLGDFNPSESDVV 277
Query: 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR 367
+ + L++ L + L + + + N+++ S ++ L
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337
Query: 368 VLDLEKNAIFGEIPTWIG--ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV--RCL 423
LDL +N + E + +L L L N + + L L L
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----SMQKTGEILLTLKNLTSL 392
Query: 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483
D+S N +P+ + LNLS + + I +L+ LD+S N S
Sbjct: 393 DISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLD-SFS 447
Query: 484 CSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
L +L L +S N L +P +
Sbjct: 448 LFLPRLQ---ELYISRNKLK-TLPDASLFPV 474
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 8e-22
Identities = 63/376 (16%), Positives = 131/376 (34%), Gaps = 59/376 (15%)
Query: 10 SNSQQNFIVDLLINLGQHLEV------NIERLQELVLGLGKFFETSNINTFFLNTVSVTK 63
S+ F++++ ++ + N+ R Q L + + F + ++
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Query: 64 SSDWFQVVAKLHSLKSLVLFSC---ALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVY 120
++ +++ + L + C L NPS + +ET+ + ++ Y
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI--PQFY 297
Query: 121 PWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNL 180
+ + + +K + + +S++ F ++ SL+ L LS N + + ++N
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV---EEYLKNS 354
Query: 181 SFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLS 240
+ SL+ L L N + G L L L SL
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRS-MQKTGE--------------------ILLTLKNLTSLD 393
Query: 241 LDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDD 298
+ N+ +PD + +LNLS+ R + +L D
Sbjct: 394 ISRNTFH---------------PMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQTLEVLD 437
Query: 299 LSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS 358
+S+N L L RL L ++ N+L +PD+ + + + N+L
Sbjct: 438 VSNNNLD----SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDG 491
Query: 359 PLRNFSQLRVLDLEKN 374
+ L+ + L N
Sbjct: 492 IFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 6e-16
Identities = 54/277 (19%), Positives = 93/277 (33%), Gaps = 14/277 (5%)
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFR----GKLPDLS-LRFDDLSSNLLSGGLPDCWLHFDR 317
SIP L+ + L+LS N G L + L+ L S+ ++ D +
Sbjct: 19 SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAI 376
L L+L++N LS G L+++ LNL N + S N + L+ L +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436
F EI L +L L +K+ ++ + + L L ++ +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS-----IRDIHHLTLHLSESAFLLEI 190
Query: 437 EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496
L + L L +L + + S S ++L L
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250
Query: 497 LSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLAN 533
L + + + L FN S EL +
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 76/362 (20%), Positives = 123/362 (33%), Gaps = 64/362 (17%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ T LDL N + + LN F L+ L L+++ + P F N+ +
Sbjct: 29 GIPTETRLLDLGKNRIKT-------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L+ L L N+L V LS +L L + N L
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLS------NLTKLDISENKIV---------------ILL 120
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
L L+SL + N L IS F L++ L L
Sbjct: 121 DYMFQD--------LYNLKSLEVGDNDLVYIS--------------HRAFSGLNS-LEQL 157
Query: 279 NLSNNHFR----GKLPDL-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP 333
L + L L L L ++ + RL +L +++ +
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393
+ + N+ +L++ + LT +R+ LR L+L N I I + L L
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQE 276
Query: 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRN 452
+ L + PY F L +R L++S N+L + E + + L L L N
Sbjct: 277 IQLVGGQLAVVEPYAFRG-----LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
Query: 453 HL 454
L
Sbjct: 331 PL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 71/336 (21%), Positives = 116/336 (34%), Gaps = 60/336 (17%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
A L+ L L + V P FN ++ TL L N L + L F
Sbjct: 53 ASFPHLEELELNENIVSAVEPGA---FNNLFNLRTLGLRSNRLKL-------IPLGVFTG 102
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ +L L +S++++ + F ++ +LK L + N L + L+ SLE
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN------SLEQ 156
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
L L + T S+ L+ L L L L ++ AI
Sbjct: 157 LTLEKCNLT---------------SIPTEALSH--------LHGLIVLRLRHLNINAIR- 192
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD-----LSLRFDDLSSNLLSG 306
F L L L +S+ + + L+L ++ L+
Sbjct: 193 -------------DYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
Query: 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL 366
H L LNL+ N +S + L + + L +L P R + L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
RVL++ N + + + S+ NL L L SN
Sbjct: 299 RVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 64/302 (21%), Positives = 108/302 (35%), Gaps = 41/302 (13%)
Query: 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268
+ L N + + LE L L+ N + A+ P F
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--------------PGAF 76
Query: 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
+L N L L L +N + +P F LS+ L L+++ N++
Sbjct: 77 NNLFN-LRTLGLRSNRLK-LIPLGV--FTGLSN----------------LTKLDISENKI 116
Query: 329 SGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESL 388
+ L N+ +L + +N L + L L LEK + IPT L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHL 175
Query: 389 QNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALN 448
LIVL L+ + Y F+ L ++ L++S + + + L +L+
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKR-----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 449 LSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
++ +LT + L L FL+LS N S L +L L + L L+ +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP 289
Query: 509 GT 510
Sbjct: 290 YA 291
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 6e-30
Identities = 75/427 (17%), Positives = 140/427 (32%), Gaps = 54/427 (12%)
Query: 86 ALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSEL 145
P NL D+ + + + + + K + +S +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGF-----EDITLNNQKIVTFKNSTM 57
Query: 146 EGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-PIP 204
+ ++ L L+ ++ + +++ LY+ +N P
Sbjct: 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPH 111
Query: 205 HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSI 264
L L+ N L+ KL +LS+ N+L I
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-------------- 157
Query: 265 PDWFWDLSNKLSYLNLSNNHFRGKLPD---LSLRFDDLSSNLLSGGLPDCWLHFDRLFIL 321
D F ++ L L LS+N + SL ++S NLLS L + L
Sbjct: 158 DDTFQATTS-LQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLS-TLAIPI----AVEEL 210
Query: 322 NLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIP 381
+ ++N ++ + + L L +N LT + L N+ L +DL N + +I
Sbjct: 211 DASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL-EKIM 264
Query: 382 TWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDL 441
+Q L L + +N+ + + + ++ LDLS N L +
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQP-----IPTLKVLDLSHNHLL-HVERNQPQF 317
Query: 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNN 501
L L L N + T K+ +L L LS N + + + + + +
Sbjct: 318 DRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDAD 372
Query: 502 LSGKIPS 508
KI
Sbjct: 373 QHCKIDY 379
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-16
Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 19/214 (8%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP 357
D+ + + G D + + I+ N+ + + + LNL++ ++
Sbjct: 29 DMQTQDVYFGFED--ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTL 417
++ L + NAI +P + +++ L VL L+ N F N
Sbjct: 87 YAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN-----T 140
Query: 418 GLVRCLDLSSNKLDGAIPEEI-MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476
+ L +S+N L+ I ++ L L LS N LT + + SL ++S N
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYN 196
Query: 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
L S +L+ + LD S+N+++ +
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSIN-VVRGPV 224
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 14/200 (7%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
+++ LNN + N+ + + L +F Q+ +L+L I EI
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEI 84
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI-M 439
T+ + L + N P+ F+N + L+ L L N L ++P I
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-----VPLLTVLVLERNDLS-SLPRGIFH 138
Query: 440 DLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498
+ L L++S N+L I TSL L LS N + + LS + L ++S
Sbjct: 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 194
Query: 499 YNNLSGKIPSGTQLQSFNAS 518
YN LS + ++ +AS
Sbjct: 195 YNLLS-TLAIPIAVEELDAS 213
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 40/219 (18%), Positives = 73/219 (33%), Gaps = 64/219 (29%)
Query: 68 FQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127
+A +++ L ++ V ++ + L L NNL +
Sbjct: 198 LSTLAIPIAVEELDASHNSINVV------RGPVNVELTILKLQHNNL---------TDTA 242
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
+ L + LS +ELE + F M L++L +S N+L + Q +
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP------ 295
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
+L+ L L N ++++ Q +LE+L LD NS+
Sbjct: 296 TLKVLDLSHNHLL------------------------HVERNQPQFDRLENLYLDHNSIV 331
Query: 248 AISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286
+ L + L L LS+N +
Sbjct: 332 TLKLSTHHT------------------LKNLTLSHNDWD 352
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-28
Identities = 85/466 (18%), Positives = 155/466 (33%), Gaps = 80/466 (17%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ + + ++ + L ++ L L+D ++E F +++K
Sbjct: 51 NNQKIVTFKNSTMRK-------LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L + +N + V QN+ L L L ND + SL
Sbjct: 104 LYMGFNAIRYLPPHVFQNVP------LLTVLVLERNDLS---------------SLPRG- 141
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281
KL +LS+ N+L I D F ++ L L LS
Sbjct: 142 -------IFHNTPKLTTLSMSNNNLERIE--------------DDTFQATTS-LQNLQLS 179
Query: 282 NNHFRGKLPD---LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
+N + SL ++S NLLS L + L+ ++N ++ +
Sbjct: 180 SNRLT-HVDLSLIPSLFHANVSYNLLS-TLAIPI----AVEELDASHNSIN-VVRG--PV 230
Query: 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398
+ L L +N LT + L N+ L +DL N + +I +Q L L + +
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISN 287
Query: 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPI 458
N+ + + + ++ LDLS N L + L L L N +
Sbjct: 288 NRLV-ALNLYGQP-----IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--- 337
Query: 459 TPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP--SGTQLQSFN 516
T K+ +L L LS N + + + + + + KI L
Sbjct: 338 TLKLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE 395
Query: 517 ASVYAGNLELCGLPLANMCLDEESTPGPGTDDDSDTLEDEDDQFIT 562
+ + L + L ++ + G + D+ +IT
Sbjct: 396 SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-25
Identities = 84/449 (18%), Positives = 150/449 (33%), Gaps = 55/449 (12%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
++ L L + ++ F + +I+ L + N + L FQ+
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIRY-------LPPHVFQN 121
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ L L L ++L F N L L +S N L Q + SL+
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQN 175
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
L L N T + L SL ++ N L +L+ +E L NS+ +
Sbjct: 176 LQLSSNRLTH-VD-LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRG 228
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGG 307
+ L+ L L +N+ L L DLS N L
Sbjct: 229 PVNVE------------------LTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKI 269
Query: 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR 367
+ ++ RL L ++NNRL + + + L+L +N L + F +L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-IPYQFENEYKSTLGLVR--CLD 424
L L+ N+I + + L L+L N + N + F N + + C
Sbjct: 328 NLYLDHNSI-VTLKL---STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383
Query: 425 LSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPC 484
+ E + + ++ + + G ++ D ++ ++L
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443
Query: 485 SLSQLSGLGVLDLSYNNLSGKIPSGTQLQ 513
L G L+ N L ++ T Q
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQ 472
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 1e-21
Identities = 47/293 (16%), Positives = 93/293 (31%), Gaps = 39/293 (13%)
Query: 216 SLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275
+D+ + L+ + ++ +++R + +
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--------------AALLDSFRQ-V 77
Query: 276 SYLNLSNNHFR----GKLPDL-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG 330
LNL++ +++ + N + P + + L +L L N LS
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 331 KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390
+ TL++ NN L + + L+ L L N + + + +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDL---SLIPS 193
Query: 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLS 450
L ++ N + V LD S N ++ + + V L L L
Sbjct: 194 LFHANVSYNLLS-TLA---------IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240
Query: 451 RNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
N+LT + L +DLS N + ++ L L +S N L
Sbjct: 241 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 9e-16
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 318 LFILNLANNRLSGKIPDSMGF--LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375
++ + + + LNN + N+ + + L +F Q+ +L+L
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86
Query: 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435
I EI T+ + L + N P+ F+N + L+ L L N L ++P
Sbjct: 87 I-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-----VPLLTVLVLERNDLS-SLP 139
Query: 436 EEI-MDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493
I + L L++S N+L I TSL L LS N + + LS + L
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF 195
Query: 494 VLDLSYNNLSGKIPSGTQLQSFNAS 518
++SYN LS + ++ +AS
Sbjct: 196 HANVSYNLLS-TLAIPIAVEELDAS 219
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 57/360 (15%), Positives = 109/360 (30%), Gaps = 80/360 (22%)
Query: 68 FQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127
+A +++ L ++ V ++ + L L NNL +
Sbjct: 204 LSTLAIPIAVEELDASHNSINVV------RGPVNVELTILKLQHNNL---------TDTA 248
Query: 128 AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
+ L + LS +ELE + F M L++L +S N+L + Q +
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP------ 301
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
+L+ L L N ++++ Q +LE+L LD NS+
Sbjct: 302 TLKVLDLSHNHLL------------------------HVERNQPQFDRLENLYLDHNSIV 337
Query: 248 AISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF-------------RGKLPDLSL 294
+ L + L L LS+N + R + D
Sbjct: 338 TLKLSTHHT------------------LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 379
Query: 295 RFD---DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351
L L +L +I + + + I ++ ++
Sbjct: 380 HCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHY 439
Query: 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFEN 411
+T + PL+ QL E A ++ + Q L L + + +
Sbjct: 440 ITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDG 499
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-27
Identities = 60/319 (18%), Positives = 108/319 (33%), Gaps = 35/319 (10%)
Query: 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188
Q+ K ++DS L+ + + ++K+L LS N LS + + +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------K 59
Query: 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRA 248
LE L L N L S+L L+ N + + L +E+L N++
Sbjct: 60 LELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 249 ISLCILTSPI-------GISDSIPDWFWDLSNKLSYLNLSNN--------HFRGKLPDLS 293
+S I+ S + YL+L N +
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSD--T 170
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
L +L N + + + F +L L+L++N+L+ + + ++L NN+L
Sbjct: 171 LEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF-HGNIPYQFENE 412
+ LR L DL N Q + ++ ++ K G +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 413 YKSTLGLVRCLDLSSNKLD 431
G C DL + D
Sbjct: 287 TLGHYGAYCCEDLPAPFAD 305
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 61/363 (16%), Positives = 120/363 (33%), Gaps = 64/363 (17%)
Query: 148 GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG 207
I + N K +++ + L + + Q+ +++ L L N + I
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW------NVKELDLSGNPLSQ-IS--- 50
Query: 208 GFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267
L+ +KLE L+L N L D
Sbjct: 51 -------------------AADLAPFTKLELLNLSSNVLY---------------ETLD- 75
Query: 268 FWDLSNKLSYLNLSNNHFRGKLPDL-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANN 326
LS L L+L+NN+ + +L S+ ++N +S + + LANN
Sbjct: 76 LESLST-LRTLDLNNNYVQ-ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANN 130
Query: 327 RLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
+++ G + + L+L N + + L L+L+ N I+ ++ +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV- 188
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L L L SNK + +F++ V + L +NKL I + + L
Sbjct: 189 -VFAKLKTLDLSSNKLA-FMGPEFQS-----AAGVTWISLRNNKLV-LIEKALRFSQNLE 240
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
+L N T + + +++ + + + L
Sbjct: 241 HFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCED 298
Query: 506 IPS 508
+P+
Sbjct: 299 LPA 301
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 18/209 (8%)
Query: 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL 366
+ + + +R I + ++ L + N+ L+L N L+ + L F++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLS 426
+L+L N + E ESL L L L +N + + L +
Sbjct: 61 ELLNLSSNVL-YETLDL--ESLSTLRTLDLNNNYVQ-ELL---------VGPSIETLHAA 107
Query: 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN-LFSGSIPCS 485
+N + + G + L+ N +T G + + +LDL N + + +
Sbjct: 108 NNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 486 LSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+ L L+L YN + +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAK 192
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 62/341 (18%), Positives = 123/341 (36%), Gaps = 69/341 (20%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+L LDL +N + + F+++ +L +L L ++++ P F +
Sbjct: 49 DLPPDTALLDLQNNKITE-------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L++L LS N+L + +L+ L + N+ T +
Sbjct: 102 LERLYLSKNQLK-----ELPEKMP----KTLQELRVHENEITK-VR-------------- 137
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
+ L+++ + L N L++ + F + LSY+
Sbjct: 138 --------KSVFNGLNQMIVVELGTNPLKSSGI------------ENGAFQGMKK-LSYI 176
Query: 279 NLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
+++ + +P SL L N ++ + L L L+ N +S S
Sbjct: 177 RIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI-----FGEIPTWIGESLQN 390
+ ++ L+L+NN+L K+P L + ++V+ L N I P +
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 391 LIVLSLKSNKF-HGNI-PYQFENEYKSTLGLVRCLDLSSNK 429
+SL SN + I P F + + + L + K
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRC-----VYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 55/287 (19%), Positives = 100/287 (34%), Gaps = 39/287 (13%)
Query: 227 DKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286
D L L +L L N + IS P F L L L LS N +
Sbjct: 69 DGDFKNLKNLHTLILINNKISKIS--------------PGAFAPLVK-LERLYLSKNQLK 113
Query: 287 GKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF--LNN 341
+LP+ +L+ + N ++ + +++ ++ L N L ++ F +
Sbjct: 114 -ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ + + + +T +P L L L L+ N I ++ + L NL L L N
Sbjct: 173 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSI 228
Query: 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTG----- 456
N +R L L++NKL +P + D + + L N+++
Sbjct: 229 SAVDNGSLAN-----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 457 -PITPKIGELTSLDFLDLSRN-LFSGSI-PCSLSQLSGLGVLDLSYN 500
+ S + L N + I P + + + L
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 53/299 (17%), Positives = 95/299 (31%), Gaps = 60/299 (20%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLLNLK-- 127
L +L +L+L + + ++P F +E L LS N L + L L+
Sbjct: 73 KNLKNLHTLILINNKISKISPGA---FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Query: 128 ----------AFQHMVSLKSLYLSDSEL-EGGIPK-FFGNMCSLKKLRLSYNKLSGQYSQ 175
F + + + L + L GI F M L +R++ ++
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----- 184
Query: 176 VIQNLSFGCVVNSLEGLYLRWNDFTG-PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234
I SL L+L N T L G ++L L N ++ + SL+
Sbjct: 185 TIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSL 294
L L L+ N L +P D + + L NN+ +
Sbjct: 241 HLRELHLNNNKLV---------------KVPGGLADHKY-IQVVYLHNNNIS-AIGSNDF 283
Query: 295 RFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI--PDSMGFLNNIWTLNLHNNR 351
++ S ++L +N + P + + + L N +
Sbjct: 284 CPPGYNTKKAS------------YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 17/215 (7%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP 357
DL +N ++ + + L L L NN++S P + L + L L N+L +LP
Sbjct: 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH-GNIPYQ-FENEYKS 415
+ L+ L + +N I ++ + L +IV+ L +N I F+
Sbjct: 117 EKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG---- 169
Query: 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLS 474
+ + + ++ + IP+ + L L+L N +T + L +L L LS
Sbjct: 170 -MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLS 224
Query: 475 RNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509
N S SL+ L L L+ N L K+P G
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 63/333 (18%), Positives = 107/333 (32%), Gaps = 48/333 (14%)
Query: 188 SLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
E LY + + P L + + + + + + G +L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQIETRTGRAL 68
Query: 247 RAISLCILTSPIGISDSIPDWFWDL-SNKLSYLNLSNNHFRGKLPD-----LSLRFDDLS 300
+ + D D L L + + PD L+ +
Sbjct: 69 K---------------ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112
Query: 301 SNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL-HNNRLT------ 353
+ L LPD F L L LA N L +P S+ LN + L++ LT
Sbjct: 113 AAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 354 --GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFEN 411
+ L+ L LE I +P I LQNL L ++++ + +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHH 227
Query: 412 EYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLS-RNHLTGPITPKIGELTSLDF 470
L + LDL P L L L ++L + I LT L+
Sbjct: 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEK 281
Query: 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
LDL + +P ++QL ++ + + +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 62/374 (16%), Positives = 111/374 (29%), Gaps = 53/374 (14%)
Query: 96 WHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAF-QHMVSLKSLYLSDSELEGGIPKFFG 154
H + S+ E L + L+ + + + Y +D +
Sbjct: 6 HHHHHSSGRENLYFQGST-----------ALRPYHDVLSQWQRHYNADRNRWHSAWRQ-A 53
Query: 155 NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEA 214
N + + + L + +L L LR S L+
Sbjct: 54 NSNNPQIETRTGRAL-----KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQH 108
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
++D L + ++ Q + LE+L+L N LR ++P L+
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------ALPASIASLNR- 151
Query: 275 LSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334
L L++ +LP+ L S L L L + +P
Sbjct: 152 LRELSIRACPELTELPE----------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVL 394
S+ L N+ +L + N+ L+ L + + +L LDL P G L L
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRL 258
Query: 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHL 454
LK +P L + LDL +P I L + + +
Sbjct: 259 ILKDCSNLLTLPLDIHR-----LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
Query: 455 TGPITPKIGELTSL 468
+ +
Sbjct: 314 AQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 8e-20
Identities = 48/319 (15%), Positives = 86/319 (26%), Gaps = 53/319 (16%)
Query: 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV 133
L + W S + + + L + +L
Sbjct: 32 LSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALKA------TADLLEDATQP 81
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
+L L L P + L+ + + L + +Q + LE L
Sbjct: 82 GRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA------GLETLT 133
Query: 194 LRWNDFTGPIPH-LGGFSSLEAWSLDVNCLN-----------GTIDKSLSQLSKLESLSL 241
L N +P + + L L + L L+SL L
Sbjct: 134 LARNPLRA-LPASIASLNRLR--ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 242 DGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFD 297
+ +R S+P +L N L L + N+ P + L
Sbjct: 191 EWTGIR---------------SLPASIANLQN-LKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP 357
DL P + L L L + +P + L + L+L +LP
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 358 SPLRNFSQLRVLDLEKNAI 376
S + ++ + +
Sbjct: 295 SLIAQLPANCIILVPPHLQ 313
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 81/430 (18%), Positives = 143/430 (33%), Gaps = 84/430 (19%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK-FFGNMC 157
L + +DLS N++ LN +F + L+ L + I F +
Sbjct: 27 ELPAHVNYVDLSLNSIAE-------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
SL L+L YN+ + L+ +LE L L + G + F L
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLA------NLEVLTLTQCNLDGAVLSGNFFKPL----- 128
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
+ LE L L N+++ I P F+ +
Sbjct: 129 ----------------TSLEMLVLRDNNIKKIQ--------------PASFFLNMRRFHV 158
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
L+L+ N + + + + L + + ++ L + +
Sbjct: 159 LDLTFNKVKSICEED---LLNFQGKHFT------LLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 338 FLNNIWTLNLHNNRLTGKLPSP---LRNFSQLRVLDLEKNAI---------FGEIP--TW 383
+I TL+L N + ++++ L L + F + T+
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 384 IGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LV 442
G + L +K + F + + L L+ N+++ I + L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSH-----FTDLEQLTLAQNEIN-KIDDNAFWGLT 323
Query: 443 GLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIP-CSLSQLSGLGVLDLSYN 500
L+ LNLS+N L I ++ L L+ LDLS N ++ S L L L L N
Sbjct: 324 HLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381
Query: 501 NLSGKIPSGT 510
L +P G
Sbjct: 382 QLK-SVPDGI 390
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 55/333 (16%), Positives = 105/333 (31%), Gaps = 54/333 (16%)
Query: 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNL---PSSSVYPWLLNLKAF 129
L SL+ LVL + + P+ F LDL+ N + + +
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASF--FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSL 189
+ S+ +++ L S+ L LS N ++ + +
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKI 241
Query: 190 EGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI 249
+ L L + G F + ++ + S +++ L + + A+
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-----------EASGVKTCDLSKSKIFAL 290
Query: 250 SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP 309
F ++ L L L+ N K+ D + F L+
Sbjct: 291 L--------------KSVFSHFTD-LEQLTLAQNEIN-KIDDNA--FWGLTH-------- 324
Query: 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369
L LNL+ N L L+ + L+L N + L+ L
Sbjct: 325 --------LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
L+ N + +P I + L +L + L +N +
Sbjct: 377 ALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 12/198 (6%)
Query: 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
++ ++L N + + L+ L +E+ I L +LI+L L N+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 401 FHGNIPYQ-FENEYKSTLGLVRCLDLSSNKL-DGAIPEEIMD-LVGLIALNLSRNHLTGP 457
F + F L + L L+ L + L L L L N++
Sbjct: 91 FL-QLETGAFNG-----LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK- 143
Query: 458 ITPKI--GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSF 515
I P + LDL+ N L G L ++++ + + L
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 516 NASVYAGNLELCGLPLAN 533
N + L L+
Sbjct: 204 KCGNPFKNTSITTLDLSG 221
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 57/315 (18%), Positives = 96/315 (30%), Gaps = 64/315 (20%)
Query: 220 NCLNGTID---KSLSQL----SKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272
+ + + L Q+ + + + L NS+ ++ F L
Sbjct: 9 SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN--------------ETSFSRLQ 54
Query: 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
+ L +L + + + + F LSS L IL L N+
Sbjct: 55 D-LQFLKVEQQTPGLVIRNNT--FRGLSS----------------LIILKLDYNQFLQLE 95
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKL--PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390
+ L N+ L L L G + + + + L +L L N I P +++
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLS 450
VL L NK N L LSS L +++
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHF---TLLRLSSITL----------------QDMN 196
Query: 451 RNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP---CSLSQLSGLGVLDLSYNNLSGKIP 507
L + TS+ LDLS N F S+ + + L LS + G
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 508 SGTQLQSFNASVYAG 522
T + + + G
Sbjct: 257 GHTNFKDPDNFTFKG 271
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 61/296 (20%)
Query: 1 NQYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFETSNINTFFLNTVS 60
N+ K I L+ L ++ G F+ ++I T L+
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 61 VTKS-SDWFQVVAKLHSLKSLVLFSCALPPVN---------PSFIWHFNLSTSIETLDLS 110
+S + F ++SL+L + + +F + ++ ++T DLS
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 111 DNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS 170
+ + + L F H L+ L L+ +E+ F + L KL LS N L
Sbjct: 284 KSKIFA-------LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 171 GQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSL 230
S++ +NL LE L L +N + +
Sbjct: 337 SIDSRMFENLD------KLEVLDLSYNHIRA-LGD------------------QSFLG-- 369
Query: 231 SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286
L L+ L+LD N L+++ P GI D + L + L N +
Sbjct: 370 --LPNLKELALDTNQLKSV-------PDGIFDRLT--------SLQKIWLHTNPWD 408
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 89/455 (19%), Positives = 151/455 (33%), Gaps = 43/455 (9%)
Query: 69 QVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128
+ L L+ L++ + ++ S F + +E LDLS N L S
Sbjct: 39 SDILSLSKLRILIISHNRIQYLDISV---FKFNQELEYLDLSHNKLVKIS---------- 85
Query: 129 FQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN 187
V+LK L LS + + I K FGNM LK L LS L I +L+ V+
Sbjct: 86 CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
L Y D G SL + + +S +L+ ++++
Sbjct: 146 VLGETYGEKEDP-------EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 248 AI-SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG--------KLPDLSLRFDD 298
+ + + I + + L+ + + N F + S+
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 299 LSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS 358
L L L I + ++ +N+ N +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418
S LD N + + L L L L+ N+ + + T
Sbjct: 319 CPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLK-----ELSKIAEMTTQ 372
Query: 419 LV--RCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475
+ + LD+S N + + L++LN+S N LT I + + LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430
Query: 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
N SIP + +L L L+++ N L +P G
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 3e-20
Identities = 73/428 (17%), Positives = 130/428 (30%), Gaps = 67/428 (15%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+LS L++S N + L + L+ L +S + ++ F
Sbjct: 18 DLSQKTTILNISQNYISE-------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L+ L LS+NKL +S VN L+ L L +N F +P F ++
Sbjct: 71 LEYLDLSHNKL--------VKISCHPTVN-LKHLDLSFNAFDA-LPICKEFGNM------ 114
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
S+L+ L L L S+ + +
Sbjct: 115 ---------------SQLKFLGLSTTHLEKSSVLPIAH----LNISKVLLVLGETYGEKE 155
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
+ SL ++ L L + N+ K +
Sbjct: 156 DPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 339 LNNI------WTLNLHNNRLTGKLPSPLRNF---SQLRVLDLEKNAIFG----EIPTWIG 385
L + L L+N T + + + + + G + G
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
SL+ L + + S+ F Y +E + + + + + +
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEI-----FSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS---LSQLSGLGVLDLSYNNL 502
L+ S N LT + G LT L+ L L N + +Q+ L LD+S N++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 503 SGKIPSGT 510
S G
Sbjct: 387 SYDEKKGD 394
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-17
Identities = 64/414 (15%), Positives = 129/414 (31%), Gaps = 44/414 (10%)
Query: 1 NQYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFETSNINTFFLNTVS 60
N + +P + L + L ++ L++ + S + T
Sbjct: 100 NAFDALPICK------EFGNMSQL-KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 61 VTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVY 120
+ + Q ++ S NL S L DN
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 121 PWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNL 180
L ++L ++ + + + ++ +S KL GQ +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 181 SFGCVVNSLEGLYLRWNDFTGPIPHL-GGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESL 239
S + +L + + F P ++ FS++ + V+ S++S L
Sbjct: 271 SG-TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 240 SLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFD-- 297
N L + +L L L N + +L ++
Sbjct: 330 DFSNNLLTDT-------VFENCGHLT--------ELETLILQMNQLK-ELSKIAEMTTQM 373
Query: 298 ------DLSSNLLSGGLPDCWLHFDR---LFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348
D+S N +S L LN+++N L+ I I L+LH
Sbjct: 374 KSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLH 429
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
+N++ +P + L+ L++ N + +P I + L +L + L +N +
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 37/193 (19%)
Query: 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFG 378
F+++ + N L +P LN+ N ++ S + + S+LR+L + N I
Sbjct: 3 FLVDRSKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-Q 58
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
+ + + Q L L L NK +S +
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVK---------------------ISCHPT-------- 89
Query: 439 MDLVGLIALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497
V L L+LS N PI + G ++ L FL LS S ++ L+ VL +
Sbjct: 90 ---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 498 SYNNLSGKIPSGT 510
K
Sbjct: 147 LGETYGEKEDPEG 159
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 57/318 (17%), Positives = 105/318 (33%), Gaps = 53/318 (16%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+S LDL +N++ L F+ + L +L L ++++ K F +
Sbjct: 51 EISPDTTLLDLQNNDISE-------LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSLEAWS 216
L+KL +S N L I +SL L + N +P G ++
Sbjct: 104 LQKLYISKNHLV-----EIPPNLP----SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIE 153
Query: 217 LDVNCL-NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275
+ N L N + KL L + L I + + L
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET------------------L 195
Query: 276 SYLNLSNNHFRGKLPDL------SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS 329
+ L+L +N + + L L N + L L+L NN+LS
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 330 GKIPDSMGFLNNIWTLNLHNNRLTG------KLPSPLRNFSQLRVLDLEKNAI-FGEIPT 382
++P + L + + LH N +T + + L N + + E+
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313
Query: 383 WIGESLQNLIVLSLKSNK 400
+ + + + + K
Sbjct: 314 ATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 60/283 (21%), Positives = 95/283 (33%), Gaps = 42/283 (14%)
Query: 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR----GKLPD 291
L + L+A+ P IS + L+L NN
Sbjct: 35 LRVVQCSDLGLKAV-------PKEISPDT-----------TLLDLQNNDISELRKDDFKG 76
Query: 292 L-SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN 350
L L L +N +S + +L L ++ N L +IP +++ L +H+N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDN 133
Query: 351 RLTGKLPSPLRNFSQLRVLDLEKNAI-FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQF 409
R+ + +++ N + + L L L + K IP
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIP--- 188
Query: 410 ENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI-GELTS 467
K + L L NK+ AI E + L L L N + I L +
Sbjct: 189 ----KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPT 242
Query: 468 LDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
L L L N S +P L L L V+ L NN++ K+
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 55/298 (18%), Positives = 97/298 (32%), Gaps = 59/298 (19%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLLNLK-- 127
L L +LVL + + ++ F+ ++ L +S N+L ++ L+ L+
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKA---FSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIH 131
Query: 128 ----------AFQHMVSLKSLYLSDSEL-EGGIPKFFGNMCSLKKLRLSYNKLSGQYSQV 176
F + ++ + + + L G + L LR+S KL+G
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG----- 186
Query: 177 IQNLSFGCVVNSLEGLYLRWNDFTG-PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235
I +L L+L N + L +S L L N + + SLS L
Sbjct: 187 IPKDLPE----TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242
Query: 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLR 295
L L LD N L +P DL L + L N+ K+
Sbjct: 243 LRELHLDNNKLS---------------RVPAGLPDLKL-LQVVYLHTNNIT-KVGVND-- 283
Query: 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF--LNNIWTLNLHNNR 351
F + + ++L NN + F + + + N +
Sbjct: 284 FCPVGFG----------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-24
Identities = 75/422 (17%), Positives = 132/422 (31%), Gaps = 102/422 (24%)
Query: 100 LSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSL 159
L+ L++ ++ L + L H + +L + D+ L +P L
Sbjct: 38 LNNGNAVLNVGESGLTT-------LPDCLPAH---ITTLVIPDNNLT-SLPALPPE---L 83
Query: 160 KKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDV 219
+ L +S N+L+ + L L
Sbjct: 84 RTLEVSGNQLT-SLPVLPPGLL------ELSIFSNPLTHLP------------------- 117
Query: 220 NCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279
+ S L L + GN L ++ L L L+
Sbjct: 118 -----------ALPSGLCKLWIFGNQLTSLP-------------------VLPPGLQELS 147
Query: 280 LSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
+S+N LP L L +N L+ LP L L++++N+L+ +P
Sbjct: 148 VSDNQLA-SLPALPSELCKLWAYNNQLT-SLPML---PSGLQELSVSDNQLA-SLPTLPS 201
Query: 338 FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397
L L +NNRLT LP+ L+ L + N + T + L L +
Sbjct: 202 ELYK---LWAYNNRLT-SLPALPSG---LKELIVSGNRL-----TSLPVLPSELKELMVS 249
Query: 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP 457
N+ ++P + L + N+L +PE ++ L +NL N L+
Sbjct: 250 GNRL-TSLP--------MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299
Query: 458 ITPKIGELTSLDFLDLSRNLFSGSIP--CSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSF 515
+ E+TS F + ++ L D G+ + F
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359
Query: 516 NA 517
Sbjct: 360 GQ 361
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 68/339 (20%), Positives = 116/339 (34%), Gaps = 66/339 (19%)
Query: 233 LSKLESLSLDGNSLRAISLCILTS--PIGISD----SIPDWFWDLSNKLSYLNLSNNHFR 286
+ L++ + L + C+ + I D S+P +L L +S N
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLT 94
Query: 287 GKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFD--------------RLFILNLANNR 327
LP L L L LP L L++++N+
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152
Query: 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387
L+ +P L L +NN+LT LP S L+ L + N + +PT
Sbjct: 153 LA-SLPALPSELCK---LWAYNNQLT-SLPM---LPSGLQELSVSDNQL-ASLPTLPS-E 202
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL 447
L L + + +P + ++ L +S N+L ++P +L L
Sbjct: 203 LYKLWAYNNRLTS----LP--------ALPSGLKELIVSGNRL-TSLPVLPSELK---EL 246
Query: 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS---- 503
+S N LT P + L L + RN + +P SL LS ++L N LS
Sbjct: 247 MVSGNRLT--SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301
Query: 504 GKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTP 542
+ T ++ + ++ P L +
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 3e-19
Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 42/251 (16%)
Query: 271 LSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNR 327
L+N + LN+ + LPD + + N L+ LP L L ++ N+
Sbjct: 38 LNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQ 92
Query: 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387
L+ +P L + + L LPS L L + N + T +
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTHLP-ALPS------GLCKLWIFGNQL-----TSLPVL 139
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL 447
L LS+ N+ ++P + L +N+L ++P GL L
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPSE--------LCKLWAYNNQLT-SLPMLP---SGLQEL 186
Query: 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
++S N L + EL L + S+P S L L +S N L+
Sbjct: 187 SVSDNQLAS-LPTLPSELYKLWAYNNRLT----SLPALPSGLK---ELIVSGNRLTSLPV 238
Query: 508 SGTQLQSFNAS 518
++L+ S
Sbjct: 239 LPSELKELMVS 249
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 82/400 (20%), Positives = 145/400 (36%), Gaps = 61/400 (15%)
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS-------FGCVV 186
L+ S L +P N+ S + ++++ C+
Sbjct: 12 FLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 187 NSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
L L + +P L LE+ N L + + L L + + +L
Sbjct: 71 RQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126
Query: 247 RAI--SLCILTSPIGISD----SIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDD 298
+ L L +S+ +P+ + S L +++ NN + KLPDL SL F
Sbjct: 127 SDLPPLLEYLG----VSNNQLEKLPE-LQNSSF-LKIIDVDNNSLK-KLPDLPPSLEFIA 179
Query: 299 LSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS 358
+N L LP+ + L + NN L K+PD L ++ NN L +LP
Sbjct: 180 AGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE-ELPE 232
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418
L+N L + + N + + + +L L+++ N ++P ++
Sbjct: 233 -LQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDNYLT-DLPELPQS------- 278
Query: 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
+ LD+S N G + E L LN S N + SL+ L++S N
Sbjct: 279 -LTFLDVSENIFSG-LSELP---PNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKL 329
Query: 479 SGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNAS 518
+P +L L S+N+L+ L+ +
Sbjct: 330 I-ELPALPPRLE---RLIASFNHLAEVPELPQNLKQLHVE 365
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 6e-22
Identities = 89/433 (20%), Positives = 144/433 (33%), Gaps = 93/433 (21%)
Query: 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM 132
L SL AL +L +E L +S+N L L Q+
Sbjct: 112 SLKSLLVDNNNLKALS----------DLPPLLEYLGVSNNQLEK---------LPELQNS 152
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
LK + + ++ L+ K SL+ + N+L +QNL L +
Sbjct: 153 SFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLE--ELPELQNLP------FLTAI 200
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252
Y N SLE S+ L L L ++ D N L+
Sbjct: 201 YADNNSLKKLPDLPL---SLE--SIVAGNNILEELPELQNLPFLTTIYADNNLLK----- 250
Query: 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPD 310
++PD L LN+ +N+ LP+L SL F D+S N+ SG L +
Sbjct: 251 ----------TLPDLP----PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG-LSE 294
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370
L+ LN ++N + + D ++ LN+ NN+L +LP+ +L L
Sbjct: 295 L---PPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPA---LPPRLERLI 343
Query: 371 LEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL 430
N + + E QNL L ++ N P E+ DL N
Sbjct: 344 ASFNHL-----AEVPELPQNLKQLHVEYNPLR-EFPDIPES----------VEDLRMNSH 387
Query: 431 DGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490
+PE L L++ N L + L ++ +
Sbjct: 388 LAEVPELPQ---NLKQLHVETNPLRE-FPDIPESVEDLR---MNSERVVDPYEFAHETTD 440
Query: 491 GLGVLDLSYNNLS 503
L +++
Sbjct: 441 KLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 7e-22
Identities = 91/424 (21%), Positives = 141/424 (33%), Gaps = 101/424 (23%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
L L+L++ L SS+ + L+SL S + L +P+ ++ S
Sbjct: 68 CLDRQAHELELNNLGL--SSLPELPPH---------LESLVASCNSLT-ELPELPQSLKS 115
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L + LS + LE L + N +P L S L+ +D
Sbjct: 116 LLVDNNNLKALSD-------------LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVD 161
Query: 219 VNCLNGTIDKSL-SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
N L K L LE ++ N L +P+ +L L+
Sbjct: 162 NNSL-----KKLPDLPPSLEFIAAGNNQLE---------------ELPE-LQNLPF-LTA 199
Query: 278 LNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
+ NN + KLPDL SL +N+L + L + NN L +PD
Sbjct: 200 IYADNNSLK-KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL 255
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395
L LN+ +N LT LP L LD+ +N + + E NL L+
Sbjct: 256 PPSLEA---LNVRDNYLT-DLPE---LPQSLTFLDVSENIF-----SGLSELPPNLYYLN 303
Query: 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455
SN+ ++ + + L++S+NKL +P L L S NHL
Sbjct: 304 ASSNEIR-SLCDLPPS--------LEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 350
Query: 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL----------------SGLGVLDLSY 499
+ L L + N P + L L +
Sbjct: 351 E-VPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405
Query: 500 NNLS 503
N L
Sbjct: 406 NPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 8e-15
Identities = 46/315 (14%), Positives = 94/315 (29%), Gaps = 54/315 (17%)
Query: 204 PHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDS 263
P + L+ + L + + + + +
Sbjct: 5 PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE--QREMA 61
Query: 264 IPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNL 323
+ L + L L+N LP+L L L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLS-SLPEL----------------------PPHLESLVA 98
Query: 324 ANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTW 383
+ N L+ ++P+ L ++ N + L+ P L L + N + ++P
Sbjct: 99 SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL-EKLPE- 148
Query: 384 IGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVG 443
+ L ++ + +N +P + + + +N+L+ +PE + +L
Sbjct: 149 LQN-SSFLKIIDVDNNSLK-KLPDLPPS--------LEFIAAGNNQLE-ELPE-LQNLPF 196
Query: 444 LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
L A+ N L SL+ + N+ +P L L L + N L
Sbjct: 197 LTAIYADNNSLKKLP----DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250
Query: 504 GKIPSGTQLQSFNAS 518
L++ N
Sbjct: 251 TLPDLPPSLEALNVR 265
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 43/266 (16%)
Query: 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCW 312
+ +P +S++ S+ L+ + + + + S + + P
Sbjct: 1 MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVK------SKTEYYNAWSEWERNAPPGN 54
Query: 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372
+ + L + L L+N L+ LP L L
Sbjct: 55 GEQREMAVSRLRDCLD-----------RQAHELELNNLGLS-SLPE---LPPHLESLVAS 99
Query: 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG 432
N++ E+P SL++L+V + P L+ L +S+N+L+
Sbjct: 100 CNSL-TELPELPQ-SLKSLLVDNNNLKALSDLPP------------LLEYLGVSNNQLE- 144
Query: 433 AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGL 492
+PE + + L +++ N L SL+F+ N +P L L L
Sbjct: 145 KLPE-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE-ELP-ELQNLPFL 197
Query: 493 GVLDLSYNNLSGKIPSGTQLQSFNAS 518
+ N+L L+S A
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAG 223
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 41/257 (15%)
Query: 231 SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP 290
+++ L L+ +L S+PD +L +++ L ++ N LP
Sbjct: 56 CLINQFSELQLNRLNLS---------------SLPD---NLPPQITVLEITQNALI-SLP 96
Query: 291 DL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348
+L SL + D N LS LP+ L L++ NN+L+ +P+ L +N
Sbjct: 97 ELPASLEYLDACDNRLST-LPE---LPASLKHLDVDNNQLT-MLPELPALLE---YINAD 148
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
NN+LT LP + L VL + N + +P E ++L L + +N ++P
Sbjct: 149 NNQLT-MLPELPTS---LEVLSVRNNQL-TFLP----ELPESLEALDVSTNLLE-SLPAV 198
Query: 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSL 468
+ S + N++ IPE I+ L + L N L+ I + + T+
Sbjct: 199 PVRNHHSEETEIF-FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
Query: 469 DFLDLSRNLFSGSIPCS 485
R FS S
Sbjct: 257 PDYHGPRIYFSMSDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 2e-20
Identities = 55/296 (18%), Positives = 97/296 (32%), Gaps = 39/296 (13%)
Query: 243 GNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDL 299
N+ + G WD K + + N L + L
Sbjct: 8 NNNFSLSQNSFYNTISGTYADYFS-AWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66
Query: 300 SSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP 359
+ LS LPD ++ +L + N L +P+ L L+ +NRL+ LP
Sbjct: 67 NRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLE---YLDACDNRLS-TLPE- 117
Query: 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
+ L+ LD++ N + T + E L ++ +N+ +P
Sbjct: 118 --LPASLKHLDVDNNQL-----TMLPELPALLEYINADNNQLT-MLP--------ELPTS 161
Query: 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSL----DFLDLSR 475
+ L + +N+L +PE L AL++S N L + F
Sbjct: 162 LEVLSVRNNQL-TFLPELPESLE---ALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRE 216
Query: 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPL 531
N + IP ++ L + L N LS +I Q+ + +
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 68/397 (17%), Positives = 120/397 (30%), Gaps = 72/397 (18%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
L L+ NL S L + L ++ + L +P+ + L+
Sbjct: 59 NQFSELQLNRLNLSS-------LPDNLPPQ---ITVLEITQNALIS-LPELPAS---LEY 104
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L N+LS + + SL+ L + N T +P L LE + D N
Sbjct: 105 LDACDNRLS----------TLPELPASLKHLDVDNNQLTM-LPELPA--LLEYINADNNQ 151
Query: 222 LNGTIDKSL-SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNL 280
L L + LE LS+ N L + +L L L++
Sbjct: 152 L-----TMLPELPTSLEVLSVRNNQLTFLP-------------------ELPESLEALDV 187
Query: 281 SNNHFR------GKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
S N + + F N ++ +P+ L D + L +N LS +I
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD---LEKNAIFGEIPTW-IGESL 388
+S+ + + L +N W E
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306
Query: 389 QNLIVLSLKSNKFHGNIPYQFENEYKS-------TLGLVRCLDLSSNKLDGAIPEEIMDL 441
++ S ++ + + + ++ L L S + E D
Sbjct: 307 EHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDR 366
Query: 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
V L NL + L + + + + L L R +F
Sbjct: 367 VALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMF 403
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 64/419 (15%), Positives = 116/419 (27%), Gaps = 107/419 (25%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
++ L L L + + L I L+++ N L S L L
Sbjct: 56 CLINQFSELQLNRLNLSSLPDN------LPPQITVLEITQNALIS------LPEL----- 98
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
SL+ L D+ L +P+ + LK L + N+L+ + LE
Sbjct: 99 PASLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT----------MLPELPALLEY 144
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
+ N T +P + LE LS+ N L +
Sbjct: 145 INADNNQLTM-LP--------------------------ELPTSLEVLSVRNNQLTFLP- 176
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311
+L L L++S N LP + +R +
Sbjct: 177 ------------------ELPESLEALDVSTNLLES-LPAVPVRNHHSEETEI------- 210
Query: 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
NR++ IP+++ L+ T+ L +N L+ ++ L +
Sbjct: 211 --------FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 372 EKNAIFGEIPTWIGESLQNLIV----LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
+ I + FE+E + LD S
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN-TFSAFLDRLS 320
Query: 428 NKLDGAIPEE--------IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
+ + + L L + T + +L + +L + L
Sbjct: 321 DTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 9e-22
Identities = 75/413 (18%), Positives = 140/413 (33%), Gaps = 24/413 (5%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLK 160
+E LD+S N L + S M SL+ L LS ++ + + K FGN+ L
Sbjct: 100 QDLEYLDVSHNRLQNIS----------CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149
Query: 161 KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVN 220
L LS K + +L C++ L +++ + + + L +
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE--SLQIPNTTVLHLVFHPNS 207
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLS--YL 278
+ ++ S++ L L+ ++ N L S + ++ + +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
L + + L++ ++ + L I ++ N
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398
+ L + + S L+ +N + +L+ L L L+
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQR 386
Query: 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHLTGP 457
N N + + LD+S N L A ++ LNLS N LTG
Sbjct: 387 NGLK-NFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 458 ITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
+ + + LDL N SIP ++ L L L+++ N L +P G
Sbjct: 444 VFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 1e-19
Identities = 75/437 (17%), Positives = 136/437 (31%), Gaps = 76/437 (17%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+L + L LS N++ L + + L+ L LS + + F
Sbjct: 49 DLPPRTKALSLSQNSISE-------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L+ L +S+N+L QN+S + SL L L +NDF +P F +
Sbjct: 102 LEYLDVSHNRL--------QNISCC-PMASLRHLDLSFNDFDV-LPVCKEFGN------- 144
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTS-----------PIGISDSIPDW 267
L+KL L L R + L + I +
Sbjct: 145 --------------LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190
Query: 268 FWDLSNKLSYLNLSNNHF--------RGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLF 319
+ + +L N L L L L+ +
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250
Query: 320 ILNLANNRLSGKIPDSMGFLNNIW-----TLNLHNNRLTGKLPSPLRNFS-----QLRVL 369
+LN+ + S+ W LN++N +T ++ +S L +
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
Query: 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK 429
++ + + + L + + L+ + N
Sbjct: 311 HVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCP-----PSPSSFTFLNFTQNV 364
Query: 430 LDGAIPEEIMDLVGLIALNLSRNHLT--GPITPKIGELTSLDFLDLSRNLF-SGSIPCSL 486
++ + L L L L RN L + ++SL+ LD+S N S + +
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424
Query: 487 SQLSGLGVLDLSYNNLS 503
+ + VL+LS N L+
Sbjct: 425 AWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 62/379 (16%), Positives = 110/379 (29%), Gaps = 74/379 (19%)
Query: 2 QYKHIPHTSNSQQNFIVDLLINLGQHLEV-----NIERLQELVLGLGKFFETSNINTFFL 56
H+ NS + V++ +N HL++ N E Q L+ L + + L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Query: 57 NTVSVT-KSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLP 115
+ T K S ++ L +++ + T++++L +
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQ 315
Query: 116 SSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQ 175
L + + LS S+ + S L + N + Q
Sbjct: 316 VFLFSKEAL----YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371
Query: 176 VIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235
L L+ L L+ N K
Sbjct: 372 GCSTLK------RLQTLILQRNGLK------------------------NFFKVALMTKN 401
Query: 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLR 295
+ SL SL ++ D W + + LNLS+N L
Sbjct: 402 MSSLETLDVSLNSL-------NSHAYDRTCAW----AESILVLNLSSN----MLTGSV-- 444
Query: 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK 355
F L + +L+L NNR+ IP + L + LN+ +N+L
Sbjct: 445 FRCLPPK---------------VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488
Query: 356 LPSPLRNFSQLRVLDLEKN 374
+ L+ + L N
Sbjct: 489 PDGVFDRLTSLQYIWLHDN 507
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 63/305 (20%), Positives = 111/305 (36%), Gaps = 74/305 (24%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ST+ L+L +N + + + +F+H+ L+ L LS + + F + +
Sbjct: 61 GISTNTRLLNLHENQIQI-------IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L L L N+L+ + LS L+ L+LR N IP
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLS------KLKELWLRNNPIES-IP-------------- 152
Query: 219 VNCLNGTIDKSLSQLSKLESLSL-DGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
+ +++ L L L + L IS F LSN L Y
Sbjct: 153 --------SYAFNRIPSLRRLDLGELKRLSYIS--------------EGAFEGLSN-LRY 189
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
LNL+ + R ++P+ L L L+L+ N LS P S
Sbjct: 190 LNLAMCNLR-EIPN----LTPLIK----------------LDELDLSGNHLSAIRPGSFQ 228
Query: 338 FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397
L ++ L + +++ + N L ++L N + +P + L +L + L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 287
Query: 398 SNKFH 402
N ++
Sbjct: 288 HNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 58/247 (23%), Positives = 85/247 (34%), Gaps = 17/247 (6%)
Query: 262 DSIPDWFWDLSNKLSYLNLSNNHFR----GKLPDL-SLRFDDLSSNLLSGGLPDCWLHFD 316
+PD +S LNL N + L L LS N + +
Sbjct: 56 REVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112
Query: 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
L L L +NRL+ + +L+ + L L NN + LR LDL +
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436
I E L NL L+L IP L + LDLS N L P
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-----LIKLDELDLSGNHLSAIRPG 225
Query: 437 EIMDLVGLIALNLSRNHLTGPITPK-IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
L+ L L + ++ + I L SL ++L+ N + + L L +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 496 DLSYNNL 502
L +N
Sbjct: 285 HLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 51/197 (25%), Positives = 71/197 (36%), Gaps = 10/197 (5%)
Query: 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
+LNL N++ +S L ++ L L N + + L L+L N
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 375 AIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI 434
+ IP L L L L++N Y F + +R LDL K I
Sbjct: 123 RL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-----IPSLRRLDLGELKRLSYI 176
Query: 435 PEEI-MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493
E L L LNL+ +L P + L LD LDLS N S P S L L
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
Query: 494 VLDLSYNNLSGKIPSGT 510
L + + + I
Sbjct: 235 KLWMIQSQIQ-VIERNA 250
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 53/240 (22%), Positives = 88/240 (36%), Gaps = 44/240 (18%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L L+ L L + + FN ++ TL+L DN L + + AF +
Sbjct: 85 KHLRHLEILQLSRNHIRTIEIG---AFNGLANLNTLELFDNRLTT-------IPNGAFVY 134
Query: 132 MVSLKSLYLSD---SELEGGIPKFFGNMCSLKKLRLS-YNKLSGQYSQVIQNLSFGCVVN 187
+ LK L+L + + F + SL++L L +LS I +F + N
Sbjct: 135 LSKLKELWLRNNPIESIPSYA---FNRIPSLRRLDLGELKRLS-----YISEGAFEGLSN 186
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
L L L + IP+L L+ L N L+ S L L+ L + + ++
Sbjct: 187 -LRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 248 AISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR----GKLPDL-SLRFDDLSSN 302
I + F +L + L +NL++N+ L L L N
Sbjct: 245 VIE--------------RNAFDNLQS-LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 60/305 (19%), Positives = 105/305 (34%), Gaps = 74/305 (24%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ ++ L+L +NN+ + F+H+ L+ L L + + F + S
Sbjct: 72 GIPSNTRYLNLMENNIQM-------IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L L L N L+ S + LS L L+LR N IP
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLS------KLRELWLRNNPIES-IP-------------- 163
Query: 219 VNCLNGTIDKSLSQLSKLESLSL-DGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
+ +++ L L L + L IS F L N L Y
Sbjct: 164 --------SYAFNRVPSLMRLDLGELKKLEYIS--------------EGAFEGLFN-LKY 200
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
LNL + + +P+ L L L ++ N P S
Sbjct: 201 LNLGMCNIK-DMPN----LTPLVG----------------LEELEMSGNHFPEIRPGSFH 239
Query: 338 FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397
L+++ L + N++++ + + L L+L N + +P + L+ L+ L L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLH 298
Query: 398 SNKFH 402
N ++
Sbjct: 299 HNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 14/243 (5%)
Query: 272 SNKLSYLNLSNNHFRGKLP---DLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
SN+ S + + ++P + R+ +L N + D + H L +L L N +
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 329 SGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESL 388
+ L ++ TL L +N LT S+LR L L N I IP++ +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRV 170
Query: 389 QNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL 447
+L+ L L K I FE L ++ L+L + +P + LVGL L
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEG-----LFNLKYLNLGMCNIK-DMPN-LTPLVGLEEL 223
Query: 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
+S NH L+SL L + + S + L+ L L+L++NNLS +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282
Query: 508 SGT 510
Sbjct: 283 HDL 285
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 9e-15
Identities = 56/253 (22%), Positives = 90/253 (35%), Gaps = 41/253 (16%)
Query: 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNH--------FRG 287
L+L N+++ I D F L + L L L N F G
Sbjct: 77 TRYLNLMENNIQMIQ--------------ADTFRHLHH-LEVLQLGRNSIRQIEVGAFNG 121
Query: 288 KLPDLSLRFDDLSSNLLSGGLPDCWL-HFDRLFILNLANNRLSGKIPDSM-GFLNNIWTL 345
L SL +L N L+ +P + +L L L NN + IP + ++ L
Sbjct: 122 -LA--SLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176
Query: 346 NL-HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
+L +L L+ L+L I ++P L L L + N F
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHFPEI 233
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI-G 463
P F L ++ L + ++++ L L+ LNL+ N+L+ + +
Sbjct: 234 RPGSFHG-----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFT 287
Query: 464 ELTSLDFLDLSRN 476
L L L L N
Sbjct: 288 PLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L +LK L L C + + + +E L++S N+ P + +F
Sbjct: 193 EGLFNLKYLNLGMCNI-----KDMPNLTPLVGLEELEMSGNHFPE-------IRPGSFHG 240
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ SLK L++ +S++ F + SL +L L++N LS + L L
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR------YLVE 294
Query: 192 LYLRWN 197
L+L N
Sbjct: 295 LHLHHN 300
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 62/306 (20%), Positives = 95/306 (31%), Gaps = 71/306 (23%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELE--GGIPKFFGNM 156
+ +S L+L N L S L F + L L LS + L G +
Sbjct: 25 GIPSSATRLELESNKLQS-------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWS 216
SLK L LS+N + S L LE L + ++ + F S
Sbjct: 78 TSLKYLDLSFNGVI-TMSSNFLGLE------QLEHLDFQHSNLKQ-MSEFSVFLS----- 124
Query: 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLS 276
L L L + R F LS+ L
Sbjct: 125 ----------------LRNLIYLDISHTHTRVAF--------------NGIFNGLSS-LE 153
Query: 277 YLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM 336
L ++ N + LPD + L L+L+ +L P +
Sbjct: 154 VLKMAGN------------------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 337 GFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396
L+++ LN+ +N P + + L+VLD N I + +L L+L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
Query: 397 KSNKFH 402
N F
Sbjct: 256 TQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 5e-19
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 10/216 (4%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF--LNNIWTLNLHNNRLTGK 355
+L SN L + +L L+L++N LS K S ++ L+L N +
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 92
Query: 356 LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415
+ S QL LD + + + + SL+NLI L + F
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---- 148
Query: 416 TLGLVRCLDLSSNKLDGAIPEEI-MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474
L + L ++ N +I +L L L+LS+ L L+SL L++S
Sbjct: 149 -LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 475 RNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510
N F L+ L VLD S N++
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 56/275 (20%), Positives = 95/275 (34%), Gaps = 44/275 (16%)
Query: 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268
SS L+ N L +L++L LSL N L C
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC------------SQSD 74
Query: 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
+ ++ L YL+LS N + +L ++L L+ ++ L
Sbjct: 75 FGTTS-LKYLDLSFNGVIT--------------------MSSNFLGLEQLEHLDFQHSNL 113
Query: 329 SGKIPDSMGF--LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386
++ + F L N+ L++ + S L VL + N+ I
Sbjct: 114 K-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 387 SLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L+NL L L + + F + L ++ L++S N L L
Sbjct: 173 ELRNLTFLDLSQCQLE-QLSPTAFNS-----LSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 446 ALNLSRNHLTG-PITPKIGELTSLDFLDLSRNLFS 479
L+ S NH+ +SL FL+L++N F+
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 59/283 (20%), Positives = 93/283 (32%), Gaps = 57/283 (20%)
Query: 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSL 135
S L L S L + F+ T + L LS N L ++ SL
Sbjct: 29 SATRLELESNKLQSLPHG---VFDKLTQLTKLSLSSNGLSFKG-----CCSQSDFGTTSL 80
Query: 136 KSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG-QYSQVIQNLSFGCVVNSLEGLYL 194
K L LS + + + F + L+ L ++ L V +L +L L +
Sbjct: 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR------NLIYLDI 133
Query: 195 RWNDFTGPIPH--LGGFSSLEAWSLDVN-CLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
+ G SSLE + N + ++L L L L L +S
Sbjct: 134 SHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS- 191
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311
P F LS+ L LN+S+N+F L + L+S
Sbjct: 192 -------------PTAFNSLSS-LQVLNMSHNNFF-SLDTFP--YKCLNS---------- 224
Query: 312 WLHFDRLFILNLANNRLSGKIPDSM--GFLNNIWTLNLHNNRL 352
L +L+ + N + F +++ LNL N
Sbjct: 225 ------LQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 30/215 (13%)
Query: 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM 132
SLK L L + ++ +F+ L E LD +NL + F +
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLGLEQL----EHLDFQHSNLKQ------MSEFSVFLSL 125
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
+L L +S + F + SL+ L+++ N + F + N L L
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF----QENFLPDIFTELRN-LTFL 180
Query: 193 YLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL 251
L P SSL+ ++ N L+ L+ L N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK- 239
Query: 252 CILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFR 286
+ L++LNL+ N F
Sbjct: 240 -------------KQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 33/191 (17%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
+ + L+ +P G ++ L L +N+L +QL L L N
Sbjct: 12 IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN------ 62
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
L S G ++ LDLS N + + +
Sbjct: 63 ---------GLSFKGCCSQSDFG-------------TTSLKYLDLSFNGV-ITMSSNFLG 99
Query: 441 LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
L L L+ ++L + L +L +LD+S + + LS L VL ++
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 500 NNLSGKIPSGT 510
N+
Sbjct: 160 NSFQENFLPDI 170
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L SL+ L + + I F ++ LDLS L L+ AF
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQ-------LSPTAFNS 197
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ SL+ L +S + + + SL+ L S N + + +SL
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-----TSKKQELQHFPSSLAF 252
Query: 192 LYLRWNDF 199
L L NDF
Sbjct: 253 LNLTQNDF 260
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 57/277 (20%), Positives = 89/277 (32%), Gaps = 71/277 (25%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ + + + L N + + +F+ +L L+L + L F +
Sbjct: 29 GIPAASQRIFLHGNRISH-------VPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 159 LKKLRLSYN-KLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
L++L LS N +L L L L+L L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLG------RLHTLHLDRCGLQ---------------EL 120
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
G L+ L+ L L N+L+A+ D F DL N L++
Sbjct: 121 GPGLFRG--------LAALQYLYLQDNALQALP--------------DDTFRDLGN-LTH 157
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
L L N +P+ + F L S L L L NR++ P +
Sbjct: 158 LFLHGNRIS-SVPERA--FRGLHS----------------LDRLLLHQNRVAHVHPHAFR 198
Query: 338 FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
L + TL L N L+ L L+ L L N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 52/192 (27%), Positives = 72/192 (37%), Gaps = 10/192 (5%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
+ L NR+S S N+ L LH+N L + + L LDL NA +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI- 438
L L L L + F L ++ L L N L A+P++
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG-----LAALQYLYLQDNALQ-ALPDDTF 149
Query: 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLS 498
DL L L L N ++ L SLD L L +N + P + L L L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 499 YNNLSGKIPSGT 510
NNLS +P+
Sbjct: 210 ANNLS-ALPTEA 220
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 55/246 (22%), Positives = 82/246 (33%), Gaps = 43/246 (17%)
Query: 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268
++ + L N ++ S L L L N L I F
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--------------AAAF 76
Query: 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
L+ L L+LS+N + P + RL L+L L
Sbjct: 77 TGLAL-LEQLDLSDNAQLRSVD------------------PATFHGLGRLHTLHLDRCGL 117
Query: 329 SGKIPDSM-GFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387
++ + L + L L +N L R+ L L L N I +P
Sbjct: 118 Q-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRG 175
Query: 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIA 446
L +L L L N+ P+ F + LG + L L +N L A+P E + L L
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRD-----LGRLMTLYLFANNLS-ALPTEALAPLRALQY 229
Query: 447 LNLSRN 452
L L+ N
Sbjct: 230 LRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 58/270 (21%), Positives = 91/270 (33%), Gaps = 63/270 (23%)
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
+ + ++L + + F +L L L N L+ + L+ LE L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLEQL 85
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252
L N + + L +L +L LD L+ +
Sbjct: 86 DLSDNAQLRSVD----------------------PATFHGLGRLHTLHLDRCGLQELG-- 121
Query: 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCW 312
P F L+ L YL L +N + LPD + F DL +
Sbjct: 122 ------------PGLFRGLAA-LQYLYLQDNALQ-ALPDDT--FRDLGN----------- 154
Query: 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372
L L L NR+S + L+++ L LH NR+ P R+ +L L L
Sbjct: 155 -----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
N + +PT L+ L L L N +
Sbjct: 210 ANNL-SALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 15/189 (7%)
Query: 325 NNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWI 384
L +P G + LH NR++ + R L +L L N + I
Sbjct: 20 QQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAA 75
Query: 385 GESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEI-MDLV 442
L L L L N ++ F LG + L L L + + L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRCGL-QELGPGLFRGLA 129
Query: 443 GLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNN 501
L L L N L + +L +L L L N S + L L L L N
Sbjct: 130 ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 502 LSGKIPSGT 510
++ +
Sbjct: 189 VA-HVHPHA 196
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 41/215 (19%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSD----SELEGGIPKFF 153
F ++ L L N L ++ AF + L+ L LSD ++ F
Sbjct: 52 FRACRNLTILWLHSNVLAR-------IDAAAFTGLALLEQLDLSDNAQLRSVDPAT---F 101
Query: 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-PIPHLGGFSSL 212
+ L L L L + + L+ +L+ LYL+ N P +L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 213 EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272
L N ++ +++ L L+ L L N + + P F DL
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------------PHAFRDLG 201
Query: 273 NKLSYLNLSNNHFR----GKLPDL-SLRFDDLSSN 302
L L L N+ L L +L++ L+ N
Sbjct: 202 R-LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 39/176 (22%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L L +L L C L + P F +++ L L DN L + L F+
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNALQA-------LPDDTFRD 151
Query: 132 MVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191
+ +L L+L + + + F + SL +L L N+++ + ++L L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG------RLMT 205
Query: 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247
LYL N+ + +P ++L+ L L+ L L+ N
Sbjct: 206 LYLFANNLSA-LPT----------------------EALAPLRALQYLRLNDNPWV 238
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 5e-16
Identities = 57/306 (18%), Positives = 90/306 (29%), Gaps = 48/306 (15%)
Query: 187 NSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDK-----SLSQLSKLESLSL 241
SLE L R + SL L V + +S L+ L+L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 242 DGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSS 301
+ + + P L+ LNL N + + L+ L
Sbjct: 103 ENLEV-------------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149
Query: 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP-- 359
L L++A + + + TL+L +N G+
Sbjct: 150 GLKV---------------LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 360 --LRNFSQLRVLDLEKNAI--FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415
F L+VL L + + + + + L L L N
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----APSCD 250
Query: 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475
+ L+LS L +P+ + L L+LS N L P EL + L L
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKG 305
Query: 476 NLFSGS 481
N F S
Sbjct: 306 NPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 6e-15
Identities = 69/310 (22%), Positives = 100/310 (32%), Gaps = 39/310 (12%)
Query: 213 EAWSLDVNCLNGTI------DKSLSQLSKLESLSLD----GNSLRAISLCILT-SPIGIS 261
WS NCL +SL L K D + ++++SL LT I
Sbjct: 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIP 81
Query: 262 DSIPDWFWDLSN--KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLF 319
I + L L L N G P L N+L+
Sbjct: 82 SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN-------------- 127
Query: 320 ILNLANNRLSGKIPDSMGFLN-NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFG 378
+ N++ + + +L + L++ +R F L LDL N G
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Query: 379 EIP---TWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP 435
E L VL+L++ P + + ++ LDLS N L A
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGM--ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 436 EEIMDLVG-LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV 494
D L +LNLS L + + L LDLS N P S +L +G
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGN 300
Query: 495 LDLSYNNLSG 504
L L N
Sbjct: 301 LSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 50/310 (16%), Positives = 83/310 (26%), Gaps = 57/310 (18%)
Query: 55 FLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNL 114
L V F + K SLK L + + +P + ++ L L + +
Sbjct: 48 LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107
Query: 115 PSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK----FFGNMCSLKKLRLSYNKLS 170
++ P L L L L + LK L ++
Sbjct: 108 TGTAPPPLL-----EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 171 GQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSL 230
+ ++ +L L L N G +
Sbjct: 163 NFSCEQVRVFP------ALSTLDLSDNPELGERGLISAL-------------------CP 197
Query: 231 SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP 290
+ L+ L+L + S L L+LS+N R
Sbjct: 198 LKFPTLQVLALRNAGMET-----------PSGVCSALAAARVQ-LQGLDLSHNSLRDAAG 245
Query: 291 DL------SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWT 344
L +LS L +P +L +L+L+ NRL P L +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSP-DELPQVGN 300
Query: 345 LNLHNNRLTG 354
L+L N
Sbjct: 301 LSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-10
Identities = 42/223 (18%), Positives = 65/223 (29%), Gaps = 14/223 (6%)
Query: 26 QHLEVNIERLQELVLGLGKFFETSNINTFFLNTVSVTKSSDWFQVV--AKLHSLKSLVLF 83
Q L + + ++N L VS W + LK L +
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 84 SCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDS 143
+ + F ++ TLDLSDN L F + L
Sbjct: 158 QAHSLNFSCEQVRVF---PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214
Query: 144 ELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPI 203
G L+ L LS+N L + L L L +
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRD-----AAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 204 PHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
L + L LD++ + S +L ++ +LSL GN
Sbjct: 270 KGL--PAKLS--VLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 23/149 (15%)
Query: 57 NTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPS 116
N + K +L+ L L + + + ++ LDLS N+L
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 117 SSVYPWLLNLKAFQHMVSLKSLYLSD---SELEGGIPKFFGNMCSLKKLRLSYNKLSGQY 173
+ L SL LS ++ G+P L L LSYN+L
Sbjct: 243 ------AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA------KLSVLDLSYNRLDR-- 288
Query: 174 SQVIQNLSFGCVVNSLEGLYLRWNDFTGP 202
+ + L L+ N F
Sbjct: 289 ------NPSPDELPQVGNLSLKGNPFLDS 311
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 71/473 (15%), Positives = 129/473 (27%), Gaps = 101/473 (21%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKA------------FQHMVSLKSLYLSDSELEGGI 149
++ +LD ++++ + L L +L L ++L +
Sbjct: 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-L 100
Query: 150 PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209
+ L L NKL+ L L L N T +
Sbjct: 101 D--VTPLTKLTYLNCDTNKLT--------KLDVSQNPL-LTYLNCARNTLT--EIDVSHN 147
Query: 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFW 269
+ L LD + ++ ++L +L N + + +
Sbjct: 148 TQLT--ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK-------------- 191
Query: 270 DLSNKLSYLNLSNNHFR----GKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN 325
L+ LN N+ + L F D SSN L+ + +L + +
Sbjct: 192 ----LLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
N L+ ++ S L+ + TL+ L L + +QL E E+
Sbjct: 243 NPLT-ELDVST--LSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDV--- 293
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
L +L ++ LDLS N L+
Sbjct: 294 THNTQLYLLDCQAAGI-------------------TELDLSQNP-------------KLV 321
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
L L+ LT + T L L S+ ++ L +
Sbjct: 322 YLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITM 376
Query: 506 IPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDDSDTLEDEDD 558
S +V L+ G P+ D + L ++
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 54/265 (20%), Positives = 101/265 (38%), Gaps = 28/265 (10%)
Query: 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPD------LSLRFDDLSSNLLSGGLPDCWLHF 315
+SIP L+ + L+LSNN + + ++L+ L+SN ++ D +
Sbjct: 44 NSIPS---GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPL-RNFSQLRVLDLEKN 374
L L+L+ N LS L+++ LNL N + L + ++L++L +
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 375 AIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI 434
F +I L L L + ++ P ++ + V L L + +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-----IQNVSHLILHMKQHI-LL 213
Query: 435 PEEIMD-LVGLIALNLSRNHLTGP--------ITPKIGELTSLDFLDLSRNLFSGSIPCS 485
E +D + L L L T + + + + ++ +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272
Query: 486 LSQLSGLGVLDLSYNNLSGKIPSGT 510
L+Q+SGL L+ S N L +P G
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDGI 296
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 63/346 (18%), Positives = 118/346 (34%), Gaps = 93/346 (26%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
L+ ++++LDLS+N + ++ Q V+L++L L+ + + F ++ S
Sbjct: 49 GLTEAVKSLDLSNNRITY-------ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFS---SLEAW 215
L+ L LSYN LS S + LS SL L L N + + FS L+
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLS------SLTFLNLLGNPYKT-LGETSLFSHLTKLQIL 154
Query: 216 SLDVNCLNGTI-DKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
+ I K + L+ LE L +D + L++ P + N
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--------------PKSLKSIQN- 199
Query: 275 LSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334
+S+L L L ++ D
Sbjct: 200 VSHLILHMKQHI-LLLEIF---------------------VDVT---------------- 221
Query: 335 SMGFLNNIWTLNLHNNRLTG----KLPS----PLRNFSQLRVLDLEKNAIFGEIPTWIGE 386
+++ L L + L +L + L R + + ++F +
Sbjct: 222 -----SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--N 274
Query: 387 SLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLD 431
+ L+ L N+ ++P F+ L ++ + L +N D
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGIFDR-----LTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 66/304 (21%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
+ +L++LVL S + + F+ S+E LDLS N L + L+ F+
Sbjct: 73 QRCVNLQALVLTSNGINTIEEDS---FSSLGSLEHLDLSYNYLSN-------LSSSWFKP 122
Query: 132 MVSLKSLYLSDSELEGGIPK-FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190
+ SL L L + + F ++ L+ LR+ +
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-------FTKIQRKD------ 169
Query: 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS 250
G + LE +D + L KSL + + L L
Sbjct: 170 ---------------FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--- 211
Query: 251 LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPD 310
+ + F D+++ + L L + D + LS G +
Sbjct: 212 ------------LLLEIFVDVTSSVECLELRDTD-----------LDTFHFSELSTGETN 248
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370
+ + + + L ++ + ++ + L N+L + L+ +
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307
Query: 371 LEKN 374
L N
Sbjct: 308 LHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 50/218 (22%), Positives = 76/218 (34%), Gaps = 20/218 (9%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
I ++ L+ IP G + +L+L NNR+T S L+ L+ L L N I
Sbjct: 35 ICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NT 90
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438
I SL +L L L N N+ F+ L + L+L N + E
Sbjct: 91 IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKP-----LSSLTFLNLLGNPYK-TLGETS 143
Query: 439 M--DLVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
+ L L L + I K LT L+ L++ + P SL + + L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 496 DLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLAN 533
L + + + LEL L
Sbjct: 204 ILHMKQHI-LLLEI----FVDVTSSVECLELRDTDLDT 236
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 96/475 (20%), Positives = 146/475 (30%), Gaps = 106/475 (22%)
Query: 100 LSTSIETLDLSDNNLPSSSV---YPWLLNLK-------------------AFQHMVSLKS 137
+S I++LD+ L + P L + A + +L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 138 LYLSDSELEGGIPKFFGNM-----CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
L L +EL C ++KL L L+G V+ + +L+ L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQEL 118
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252
+L N G L LD C +LE L L+ SL A S
Sbjct: 119 HLSDNLLGDA-----GLQLLCEGLLDPQC-------------RLEKLQLEYCSLSAASCE 160
Query: 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG----------KLPDLSLRFDDLSSN 302
L S + L +SNN K L L S
Sbjct: 161 PLASVLRA-----------KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209
Query: 303 LLSGGLPDCWLHFDRLFI-------LNLANNRL--SGKIPDSMGFLN---NIWTLNLHNN 350
++ D + L L +N+L G G L+ + TL +
Sbjct: 210 GVT---SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266
Query: 351 RLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN----LIVLSLKSNKFH 402
+T K L LR L+ L L N + E + E+L L L +KS F
Sbjct: 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF- 325
Query: 403 GNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVG-----LIALNLSRNHLTGP 457
+ + + L +S+N+L+ A E+ +G L L L+ ++
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385
Query: 458 ITPKIGEL----TSLDFLDLSRNLFSGSIPCSLSQL-----SGLGVLDLSYNNLS 503
+ SL LDLS N + L + L L L S
Sbjct: 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 66/276 (23%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
NL S + LDLS N L L +F L+ L LS E++ + ++
Sbjct: 25 NLPFSTKNLDLSFNPLRH-------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L L L+ N + LS SL+ L + SLE
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLS------SLQKLVAVETNLA----------SLEN---- 117
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
+ L L+ L++ N +++ L P++F +L+N L +L
Sbjct: 118 ---------FPIGHLKTLKELNVAHNLIQSFKL-------------PEYFSNLTN-LEHL 154
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
+LS+N + + L +P L L+L+ N ++ I
Sbjct: 155 DLSSNKIQ-SIYCTD--LRVLHQ------MPLLNLS------LDLSLNPMN-FIQPGAFK 198
Query: 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
+ L L N+L + L+ + L N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 57/254 (22%), Positives = 82/254 (32%), Gaps = 70/254 (27%)
Query: 228 KSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG 287
S +L+ L L ++ I G + LS+ LS L L+ N
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTI-------EDGA-------YQSLSH-LSTLILTGN---- 86
Query: 288 KLPDLSLR-FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTL 345
+ L+L F LSS L L L+ + + G L + L
Sbjct: 87 PIQSLALGAFSGLSS----------------LQKLVAVETNLA-SLENFPIGHLKTLKEL 129
Query: 346 NLHNNRLTGKLPSP--LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG 403
N+ +N + P N + L LDL N I I L + +L+L
Sbjct: 130 NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLS------ 181
Query: 404 NIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI- 462
LDLS N ++ I + L L L N L + I
Sbjct: 182 -------------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIF 220
Query: 463 GELTSLDFLDLSRN 476
LTSL + L N
Sbjct: 221 DRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 18/178 (10%)
Query: 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
+ L+L N L +F +L+VLDL + I I +SL +L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87
Query: 401 FHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPI 458
++ F L ++ L L ++ + L L LN++ N +
Sbjct: 88 IQ-SLALGAFSG-----LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 459 TPKI-GELTSLDFLDLSRNLFSGSIPC----SLSQLSGLGV-LDLSYNNLSGKIPSGT 510
P+ LT+L+ LDLS N SI C L Q+ L + LDLS N ++ I G
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 48/223 (21%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQH 131
L+ L L C + + + + + TL L+ N + S L L AF
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQS-------LALGAFSG 98
Query: 132 MVSLKSLYLSD---SELEGGIPKFFGNMCSLKKLRLSYNKL-SGQYSQVIQNLSFGCVVN 187
+ SL+ L + + LE G++ +LK+L +++N + S + + NL+
Sbjct: 99 LSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLT------ 149
Query: 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAW-------SLDVNCLNGTIDKSLSQLSKLESLS 240
+LE L L N I L L +N +N I + +L+ L+
Sbjct: 150 NLEHLDLSSNKIQS-IYC-TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELA 206
Query: 241 LDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNN 283
LD N L+++ P GI D + L + L N
Sbjct: 207 LDTNQLKSV-------PDGIFDRLT--------SLQKIWLHTN 234
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 13/166 (7%)
Query: 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398
+N++ + L N +T L + + ++ L + P L NL L +
Sbjct: 43 MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPI---SGLSNLERLRIMG 97
Query: 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPI 458
+ L + LD+S + D +I +I L + +++LS N I
Sbjct: 98 KDVTSDKIPNLSG-----LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 459 TPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504
P + L L L++ + + L L + G
Sbjct: 153 MP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-10
Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 17/148 (11%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+I+ L +++ + N + +L+ L + ++ + SL
Sbjct: 66 HNIKDLTINNIHAT---------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L +S++ I L + + L +N I L L++ ++ +
Sbjct: 117 LDISHSAHDDSILTKINTLP------KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAI 249
++ + + KL L ++
Sbjct: 171 VHDY--RGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 22/178 (12%), Positives = 64/178 (35%), Gaps = 40/178 (22%)
Query: 223 NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSN 282
+ T + + +Q++ L ++L ++ ++ GI N + L ++N
Sbjct: 33 SSTANITEAQMNSLTYITLANINVTDLT--------GIEY--------AHN-IKDLTINN 75
Query: 283 NHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342
+ + LS+ L L + ++ ++ L ++
Sbjct: 76 I----HATNYNP-ISGLSN----------------LERLRIMGKDVTSDKIPNLSGLTSL 114
Query: 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
L++ ++ + + + ++ +DL N +I ++L L L+++ +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418
P F L +++ I + +L ++L + ++
Sbjct: 18 PDSTFKAYLNGLLGQSST-ANITE---AQMNSLTYITLANINVT-DL------TGIEYAH 66
Query: 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
++ L +++ P I L L L + +T P + LTSL LD+S +
Sbjct: 67 NIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 479 SGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
SI ++ L + +DLSYN I
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP 154
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 70/224 (31%)
Query: 153 FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSL 212
M SL + L+ ++ + + + ++++ L + T + G S+L
Sbjct: 40 EAQMNSLTYITLANINVTD-----LTGIEY---AHNIKDLTINNIHATN-YNPISGLSNL 90
Query: 213 EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272
E + + +LS L+ L L + + DSI L
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS--------------AHDDSILTKINTLP 136
Query: 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
++ ++LS N + D+ L
Sbjct: 137 K-VNSIDLSYNG---AITDIM----------------------------PLKT------- 157
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
L + +LN+ + + + +F +L L I
Sbjct: 158 ------LPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 44/282 (15%), Positives = 85/282 (30%), Gaps = 64/282 (22%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKF-FGNMC 157
+L + L L + AF L+ + +S +++ I F N+
Sbjct: 27 DLPRNAIELRFVLTKLRV-------IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 158 SLKKLRLS-YNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWS 216
L ++R+ N L + QNL +L+ L + +P
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLP------NLQYLLISNTGIKH-LP------------ 120
Query: 217 LDVNCLNGTIDKSLSQLSKLESLSLDGN-SLRAISLCILTSPIGISDSIPDWFWDLSNKL 275
D + L + N ++ I + F LS +
Sbjct: 121 ----------DVHKIHSLQKVLLDIQDNINIHTIE--------------RNSFVGLSFES 156
Query: 276 SYLNLSNNHFRGKLPDL------SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS 329
L L+ N + ++ + + +N L D + IL+++ R+
Sbjct: 157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 330 GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
+ L + + +N + KLP L L L
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 10/207 (4%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTLNL-HNNRLTGK 355
L + F L + ++ N + I + L + + + N L
Sbjct: 36 RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 356 LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415
P +N L+ L + I +P ++L ++ N I N +
Sbjct: 96 NPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVG 151
Query: 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR-NHLTGPITPKI-GELTSLDFLDL 473
L L+ N + I + L LNLS N+L + + + LD+
Sbjct: 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDI 209
Query: 474 SRNLFSGSIPCSLSQLSGLGVLDLSYN 500
SR L L L
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNL 236
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 46/268 (17%), Positives = 77/268 (28%), Gaps = 46/268 (17%)
Query: 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLR 295
L LR I F + L + +S N +
Sbjct: 32 AIELRFVLTKLRVIQ--------------KGAFSGFGD-LEKIEISQNDVLEVIEADV-- 74
Query: 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK 355
F +L LH + I N L P++ L N+ L + N +
Sbjct: 75 FSNLPK-----------LH--EIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Query: 356 LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ-NLIVLSLKSNKFHGNIPYQFENEYK 414
+ Q +LD++ N I L ++L L N F
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG--- 176
Query: 415 STLGLVRCLDLSSNKLDGAIPEEI-MDLVGLIALNLSRNHLTGPITPKI-GELTSLDFLD 472
L +N L+ +P ++ G + L++SR + + L L
Sbjct: 177 --TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232
Query: 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
+P +L +L L L+Y
Sbjct: 233 TYNL---KKLP-TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 14/194 (7%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
++++ +IP N L +L F L +++ +N + I
Sbjct: 14 FLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 381 PTWIGESLQNLIVLSL-KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI- 438
+ +L L + + K+N P F+N L ++ L +S+ + +P+
Sbjct: 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQN-----LPNLQYLLISNTGI-KHLPDVHK 124
Query: 439 MDLVGLIALNLSRNHLTGPITPKI--GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496
+ + + L++ N I G L L++N I S + L L+
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183
Query: 497 LSYNNLSGKIPSGT 510
LS NN ++P+
Sbjct: 184 LSDNNNLEELPNDV 197
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-12
Identities = 61/330 (18%), Positives = 100/330 (30%), Gaps = 29/330 (8%)
Query: 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS 250
Y RW S + CL+ + L+ S++ +L L + A
Sbjct: 229 WFYHRWLLGRAEPH---DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVD--EAPL 283
Query: 251 LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPD 310
+P G + W DL L + FR + + +
Sbjct: 284 SVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR 343
Query: 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370
++LF L+ + + + + + L N + +R L L
Sbjct: 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA---LDPLL 399
Query: 371 LEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL----------- 419
EK + + ++ + L+S N + E L L
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL 459
Query: 420 -----VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474
V LDLS N+L A+P + L L L S N L + L L L L
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLC 516
Query: 475 RNLFSG-SIPCSLSQLSGLGVLDLSYNNLS 503
N + L L +L+L N+L
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 62/324 (19%), Positives = 111/324 (34%), Gaps = 26/324 (8%)
Query: 67 WFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVY--PWLL 124
W A+ H + V S ++ F + + + TL L + P S + P
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293
Query: 125 NLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184
N + + L + L+D + + S K+ L ++ +
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353
Query: 185 VVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLN-------GTIDKSLSQLSKLE 237
S+E + L W L L ++L S L+
Sbjct: 354 CELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412
Query: 238 SLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS---- 293
++ + +RA L L S + +S+ + L +L++ L L
Sbjct: 413 AV----DPMRAAYLDDLRSKFLLENSVLKMEYADVRVL---HLAHKDLT-VLCHLEQLLL 464
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
+ DLS N L LP L +L ++N L + + L + L L NNRL
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521
Query: 354 G-KLPSPLRNFSQLRVLDLEKNAI 376
PL + +L +L+L+ N++
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 35/195 (17%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+L + LDLS NNL L + +L SL LS + L + F + +
Sbjct: 36 SLPSYTALLDLSHNNLSR------LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSLEAWS 216
L+ L LS N L + +L +LE L L N + + L+
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVV-VDRNAFEDMAQLQKLY 142
Query: 217 LDVNCL----NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272
L N + I ++L KL L L N L+ + L
Sbjct: 143 LSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLP--------------LTDLQKLP 187
Query: 273 N-KLSYLNLSNNHFR 286
+ L L NN
Sbjct: 188 AWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG 403
L+ +L +P L S +LDL N + W L NL L L N +
Sbjct: 22 ILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN- 77
Query: 404 NIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEI-MDLVGLIALNLSRNHLTGPITPK 461
I + F + +R LDLSSN L + E + DL L L L NH+ +
Sbjct: 78 FISSEAFVP-----VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRN 130
Query: 462 I-GELTSLDFLDLSRNLFSGSIP----CSLSQLSGLGVLDLSYNNLSGKIPSGT 510
++ L L LS+N S P ++L L +LDLS N L K+P
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 21/189 (11%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP--LRNFSQLRVLDLEKNAIFG 378
L+ + +L +P + L+L +N L+ +L + + L L L N +
Sbjct: 23 LSCSKQQLP-NVPQ--SLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-N 77
Query: 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEE 437
I + + NL L L SN H + F + L + L L +N + +
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSD-----LQALEVLLLYNNHIV-VVDRN 130
Query: 438 IMD-LVGLIALNLSRNHLTGPITPKI----GELTSLDFLDLSRNLFSGSIPCSLSQLSGL 492
+ + L L LS+N ++ ++ +L L LDLS N L +L
Sbjct: 131 AFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
Query: 493 GVLDLSYNN 501
L +N
Sbjct: 190 VKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 27/146 (18%)
Query: 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLLNLK-- 127
+L +L SL+L L ++ F ++ LDLS N+L + ++ L L+
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEA---FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 128 -------------AFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLR---LSYNKLSG 171
AF+ M L+ LYLS +++ + + L KL LS NKL
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 172 QYSQVIQNLSFGCVVNSLEGLYLRWN 197
+Q L GLYL N
Sbjct: 178 LPLTDLQKLPA----WVKNGLYLHNN 199
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 53/292 (18%), Positives = 96/292 (32%), Gaps = 58/292 (19%)
Query: 125 NLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184
+ L + + + S+ ++ + + + +Q + +
Sbjct: 13 QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQY-- 63
Query: 185 VVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGN 244
+ ++ L+L N T I L +L LD N + + SL L KL+SLSL+ N
Sbjct: 64 -LPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHN 119
Query: 245 SLRAIS-LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNL 303
+ I+ L L +L L L NN K+ D++ LS
Sbjct: 120 GISDINGLVHLP------------------QLESLYLGNN----KITDIT----VLSRL- 152
Query: 304 LSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF 363
+L L+L +N++S I G L + L L N ++ L
Sbjct: 153 ------------TKLDTLSLEDNQIS-DIVPLAG-LTKLQNLYLSKNHISD--LRALAGL 196
Query: 364 SQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415
L VL+L + +L + + +Y+
Sbjct: 197 KNLDVLELFSQECLNKPINHQ-SNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353
D+L ++ + + + + N+ + + + +L N+ L L+ N+LT
Sbjct: 23 TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78
Query: 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY 413
PL N L L L++N I ++ + + L+ L LSL+ N +
Sbjct: 79 DI--KPLTNLKNLGWLFLDENKI-KDLSSL--KDLKKLKSLSLEHNGIS-------DING 126
Query: 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473
L + L L +NK+ + L L L+L N ++ I P + LT L L L
Sbjct: 127 LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYL 182
Query: 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
S+N S + +L+ L L VL+L K +
Sbjct: 183 SKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPIN 215
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 4e-11
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
F NL ++ + + LN+I + +N+ + + ++ + L L N
Sbjct: 20 FAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 75
Query: 375 AIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI 434
+ +I +L+NL L L NK ++ L ++ L L N + +
Sbjct: 76 KL-TDIKPL--TNLKNLGWLFLDENKIK-DLSSL------KDLKKLKSLSLEHNGI--SD 123
Query: 435 PEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV 494
++ L L +L L N +T IT + LT LD L L N S I L+ L+ L
Sbjct: 124 INGLVHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179
Query: 495 LDLSYNNLS 503
L LS N++S
Sbjct: 180 LYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 64/445 (14%), Positives = 131/445 (29%), Gaps = 95/445 (21%)
Query: 135 LKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYL 194
+ + ++ P K L + + +NS++ +
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKS--------VTDAVTQNELNSIDQIIA 50
Query: 195 RWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS-LCI 253
+D + + ++ L+ N L K L+ L L L LD N ++ +S L
Sbjct: 51 NNSDIKS-VQGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLKD 107
Query: 254 LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWL 313
L KL L+L +N + L
Sbjct: 108 LK------------------KLKSLSLEHNGIS-DINGLV-------------------- 128
Query: 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373
H +L L L NN+++ + L + TL+L +N+++ + PL ++L+ L L K
Sbjct: 129 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSK 184
Query: 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433
N I L+ L + L + L+L S +
Sbjct: 185 NHI---------SDLRAL-----------------------AGLKNLDVLELFSQECLNK 212
Query: 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLG 493
+LV + + L P I + + ++ +L + S +
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270
Query: 494 VLDL----SYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDD 549
+ T + +V +E A ++ G +
Sbjct: 271 IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTE 330
Query: 550 SDTLEDEDDQFITLGFYVSSILSFF 574
+ + + + ++ + F
Sbjct: 331 KNGGHEWNFNTDYMSGNDFTLYAVF 355
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 5e-11
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
+N L+ +P + L+L N L + L +++L L+L++ + ++
Sbjct: 15 VNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKL 70
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
+L L L L N+ ++P + L + LD+S N+L ++P +
Sbjct: 71 QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQT-----LPALTVLDVSFNRLT-SLPLGALR 121
Query: 441 -LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPCSL-SQLSGLGVLDL 497
L L L L N L + P + L+ L L+ N + +P L + L L L L
Sbjct: 122 GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179
Query: 498 SYNNLSGKIPSGT 510
N+L IP G
Sbjct: 180 QENSLYT-IPKGF 191
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 49/279 (17%), Positives = 74/279 (26%), Gaps = 81/279 (29%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157
+ S ++ NL +++ P L L+LS++ L
Sbjct: 6 VSKVASHLEVNCDKRNL--TALPPDLP--------KDTTILHLSENLLYTFSLATLMPYT 55
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
L +L L +L L + L L L N
Sbjct: 56 RLTQLNLDRAEL--------TKLQVDGTLPVLGTLDLSHNQLQ----------------- 90
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
++ L L L + N L ++ L L
Sbjct: 91 -------SLPLLGQTLPALTVLDVSFNRLTSLP--------------LGALRGLGE-LQE 128
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
L L N + P L L L+LANN L+ ++P +
Sbjct: 129 LYLKGNELKTLPPGL---LTPTPK----------------LEKLSLANNNLT-ELPAGL- 167
Query: 338 F--LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
L N+ TL L N L +P L L N
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 53/301 (17%), Positives = 100/301 (33%), Gaps = 69/301 (22%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ + +N+ + + + +L + + + + +L
Sbjct: 19 ANAIKIAAGKSNV---------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L L N+ I +L+ + + L L N + + G S++ L
Sbjct: 68 LELKDNQ--------ITDLAPLKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ 118
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN--KLSYLN 279
+ L+ LS L+ L LD N + IS L+ L YL+
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNIS-------------------PLAGLTNLQYLS 157
Query: 280 LSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339
+ N L L+ + +L L +N++S I + L
Sbjct: 158 IGNAQVS-DLTPLA--------------------NLSKLTTLKADDNKIS-DIS-PLASL 194
Query: 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399
N+ ++L NN+++ SPL N S L ++ L I P + +L V+ S
Sbjct: 195 PNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSG 251
Query: 400 K 400
Sbjct: 252 A 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 32/255 (12%)
Query: 254 LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG--KLPDL-SLRFDDLSSNLLSG--GL 308
+T P I+ PD + ++ DL + ++ G+
Sbjct: 3 ITQPTAINVIFPD---PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV 59
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368
+ + L L L +N+++ + + L I L L N L S + ++
Sbjct: 60 Q----YLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLKN--VSAIAGLQSIKT 111
Query: 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSN 428
LDL I P L NL VL L N+ P + L ++ L + +
Sbjct: 112 LDLTSTQITDVTPL---AGLSNLQVLYLDLNQITNISPL-------AGLTNLQYLSIGNA 161
Query: 429 KLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQ 488
++ P + +L L L N ++ + L +L + L N S P L+
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LAN 215
Query: 489 LSGLGVLDLSYNNLS 503
S L ++ L+ ++
Sbjct: 216 TSNLFIVTLTNQTIT 230
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 45/282 (15%)
Query: 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289
L+ ++ +++ T + +D + ++ L+ +
Sbjct: 15 DPALANAIKIAAGKSNV--------TDTVTQADL---------DGITTLSAFGTGVT-TI 56
Query: 290 PDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345
+ L +L N ++ P + ++ L L+ N L K ++ L +I TL
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTL 112
Query: 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI 405
+L + ++T +PL S L+VL L+ N I P L NL LS+ + +
Sbjct: 113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISPL---AGLTNLQYLSIGNAQVSDLT 167
Query: 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGEL 465
P + L + L NK+ + L LI ++L N ++ ++P +
Sbjct: 168 PL-------ANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD-VSP-LANT 216
Query: 466 TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507
++L + L+ + + L V ++ I
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIA 255
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 51/363 (14%), Positives = 114/363 (31%), Gaps = 63/363 (17%)
Query: 103 SIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSEL--EGG--IPKFFGNMCS 158
SIE L + + + L S+K + LS + + E + + +
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLL---EDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 159 LKKLRLSYN---KLSGQYSQVIQNLSFGCVVN-SLEGLYLRWNDFTGPIPHLGGFSSLEA 214
L+ S ++ + + ++ L + L + L N F L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-----PTAQEPLI- 115
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
LS+ + LE L L N L + + + + + +
Sbjct: 116 -------------DFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPP 160
Query: 275 LSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK--- 331
L + N R ++ S + L + + N + +
Sbjct: 161 LRSIICGRN-----------RLENGSMKEWAKTFQSH----RLLHTVKMVQNGIRPEGIE 205
Query: 332 --IPDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
+ + + + + L+L +N T L L+++ LR L L + +
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265
Query: 386 ESLQN-----LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL--DGAIPEEI 438
++ L L L+ N+ + + + + L+L+ N+ + + +EI
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325
Query: 439 MDL 441
++
Sbjct: 326 REV 328
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 56/326 (17%), Positives = 103/326 (31%), Gaps = 68/326 (20%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNL-KAFQHMVSLKSLYLSD-------SELEGG---IP 150
S++ + LS N + + + L + L+ SD E+ +
Sbjct: 32 DSVKEIVLSGNTIGTEAARW----LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 151 KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN-SLEGLYLRWNDFTGPIPHLGGF 209
+ L +RLS N + L + LE LYL N
Sbjct: 88 QALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSKHTPLEHLYLHNNGLGP-----QAG 139
Query: 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFW 269
+ + A +L +N K L S+ N L S+ + +
Sbjct: 140 AKI-ARALQELAVN----KKAKNAPPLRSIICGRNRLENGSM------KEWAKTFQS--- 185
Query: 270 DLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS 329
L + + N R + +LL GL C L +L+L +N +
Sbjct: 186 --HRLLHTVKMVQNGIR----------PEGIEHLLLEGLAYC----QELKVLDLQDNTFT 229
Query: 330 GK----IPDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFS--QLRVLDLEKNAIFGE 379
+ ++ N+ L L++ L+ + + L+ L L+ N I +
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289
Query: 380 IPTWIGESLQ----NLIVLSLKSNKF 401
+ + +L+ L L N+F
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 60/367 (16%), Positives = 109/367 (29%), Gaps = 76/367 (20%)
Query: 134 SLKSLYLSDSEL--EG--GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSL 189
S++ L + E + S+K++ LS N + + ++ + L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDL 62
Query: 190 EGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI 249
E FTG + +L + ++L + KL ++ L N+
Sbjct: 63 EIAEFSDI-FTGRVKDEIP-EALRL-----------LLQALLKCPKLHTVRLSDNAFGPT 109
Query: 250 SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP 309
+ L + L +L L NN L + ++ L +
Sbjct: 110 AQEPLIDFLSKHTP-----------LEHLYLHNN----GLGPQAGAK--IARALQELAVN 152
Query: 310 DCWLHFDRLFILNLANNRLSGK----IPDSMGFLNNIWTLNLHNNRLTGK-----LPSPL 360
+ L + NRL + + T+ + N + + L L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212
Query: 361 RNFSQLRVLDLEKNAIFGEIPTWIGESL---QNLIVLSLKSNKFHGNIPYQFENEYKSTL 417
+L+VLDL+ N + + +L NL L L +
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL----------SARGAA 262
Query: 418 GLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE-----LTSLDFLD 472
+V N GL L L N + + + L FL+
Sbjct: 263 AVVDAFSKLENI-------------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309
Query: 473 LSRNLFS 479
L+ N FS
Sbjct: 310 LNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 47/306 (15%), Positives = 92/306 (30%), Gaps = 77/306 (25%)
Query: 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289
+++ S +E SL +++ + + + DS + + LS N
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDS-----------VKEIVLSGNTI---- 44
Query: 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANN---RLSGKIPDSMGFLNNIWTLN 346
++ LS + L I ++ R+ +IP+++ L
Sbjct: 45 -------GTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLL------ 87
Query: 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ---NLIVLSLKSNKFH- 402
L +L + L NA + + L L L L +N
Sbjct: 88 -----------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136
Query: 403 ----------GNIPYQFENEYKSTLGLVRCLDLSSNKLDG----AIPEEIMDLVGLIALN 448
+ + + L R + N+L+ + L +
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPL---RSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193
Query: 449 LSRNHLTGP-ITPKIGEL----TSLDFLDLSRNLFSG----SIPCSLSQLSGLGVLDLSY 499
+ +N + I + E L LDL N F+ ++ +L L L L+
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253
Query: 500 NNLSGK 505
LS +
Sbjct: 254 CLLSAR 259
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 49/368 (13%), Positives = 102/368 (27%), Gaps = 107/368 (29%)
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVN-SLEGLYLRWNDFTGPIPHLGGFSSLEAWS 216
S++ L + ++ ++ +++ + + S++ + L N G +
Sbjct: 5 SIEGKSLKLDAIT---TEDEKSVFAVLLEDDSVKEIVLSGNTI--------GTEAARW-- 51
Query: 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLS 276
+ ++++ LE + I + + ++ KL
Sbjct: 52 ---------LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-----CPKLH 97
Query: 277 YLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLS------- 329
+ LS+N F + L L L L L NN L
Sbjct: 98 TVRLSDN-----------AFGPTAQEPLIDFLSKH----TPLEHLYLHNNGLGPQAGAKI 142
Query: 330 ------GKIPDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGE 379
+ + ++ NRL ++ L + + +N I E
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKL--DGA--IP 435
+++L++ L + L + LDL N G+ +
Sbjct: 203 -------GIEHLLLEGLAYCQ---------------EL---KVLDLQDNTFTHLGSSALA 237
Query: 436 EEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVL 495
+ L L L+ L+ + + N GL L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDA-----FSKLEN-------------IGLQTL 279
Query: 496 DLSYNNLS 503
L YN +
Sbjct: 280 RLQYNEIE 287
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSEL--EGG--IPKFF 153
F + T+ + N + + L L+ + LK L L D+ G +
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240
Query: 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213
+ +L++L L+ LS + + + + L+ L L++N+ +L
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-----AVRTL- 294
Query: 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSL 246
+D L L L+GN
Sbjct: 295 KTVIDEKM------------PDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 39/197 (19%), Positives = 62/197 (31%), Gaps = 41/197 (20%)
Query: 101 STSIETLDLSDNNLPS------SSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG----IP 150
T +E L L +N L + L K ++ L+S+ + LE G
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180
Query: 151 KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN-SLEGLYLRWNDFTGPIPHLGGF 209
K F + L +++ N + + + L G L+ L L+ N FT G
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTFT-----HLGS 233
Query: 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFW 269
S+L +L L L L+ L A + ++I
Sbjct: 234 SALA--------------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI----- 274
Query: 270 DLSNKLSYLNLSNNHFR 286
L L L N
Sbjct: 275 ----GLQTLRLQYNEIE 287
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 11/195 (5%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNL-HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
L L L + L NI + + + L N S++ +++
Sbjct: 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
I + L L L + + P + + + L+++ N +IP
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLK-MFP---DLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 440 DLVG--LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP-CSLSQL-SGLGVL 495
+ + L L N T + T LD + L++N + I + + SG +L
Sbjct: 152 QGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 496 DLSYNNLSGKIPSGT 510
D+S +++ +PS
Sbjct: 211 DVSQTSVT-ALPSKG 224
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 40/262 (15%), Positives = 90/262 (34%), Gaps = 63/262 (24%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSD----SELEGGIPKFFG 154
+L S +TL L + +L + + AF ++ ++ +Y+S +LE F
Sbjct: 28 SLPPSTQTLKLIETHLRT-------IPSHAFSNLPNISRIYVSIDVTLQQLESHS---FY 77
Query: 155 NMCSLKKLRLSYNK-LSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213
N+ + + + + L+ ++ L L+ L + P L S +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELP------LLKFLGIFNTGLKM-FPDLTKVYSTD 130
Query: 214 A-WSLDV--NCLNGTI-DKSLSQLSK-LESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268
+ L++ N +I + L +L L N S+ +
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---------------SVQGYA 175
Query: 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRL 328
++ + KL + L+ N + + + F + S +L+++ +
Sbjct: 176 FNGT-KLDAVYLNKNKYLTVIDKDA--FGGVYSG---------------PSLLDVSQTSV 217
Query: 329 SGKIPDSMGFLNNIWTLNLHNN 350
+ +P L ++ L N
Sbjct: 218 T-ALPS--KGLEHLKELIARNT 236
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 63/252 (25%), Positives = 93/252 (36%), Gaps = 70/252 (27%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
N+ + LDL N L S L KAF + L+ LYL+D++L+ F + +
Sbjct: 34 NIPADTKKLDLQSNKLSS-------LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L+ L ++ NKL V L +L L L N SL
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQLK----------SLPP---- 126
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
D L+KL LSL N L+++ P G+ F L++ L L
Sbjct: 127 -----RVFDS----LTKLTYLSLGYNELQSL-------PKGV-------FDKLTS-LKEL 162
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
L NN + ++P+ + FD L+ L L L NN+L +
Sbjct: 163 RLYNNQLK-RVPEGA--FDKLT----------------ELKTLKLDNNQLKRVPEGAFDS 203
Query: 339 LNNIWTLNLHNN 350
L + L L N
Sbjct: 204 LEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 63/244 (25%), Positives = 92/244 (37%), Gaps = 68/244 (27%)
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
KKL L NKLS S+ L+ L LYL N +L A
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLT------KLRLLYLNDNKLQ----------TLPAGIF 81
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
+L LE+L + N L+A+ PIG+ F L N L+
Sbjct: 82 K-------------ELKNLETLWVTDNKLQAL-------PIGV-------FDQLVN-LAE 113
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
L L N + LP FD L+ L L+L N L +P +
Sbjct: 114 LRLDRNQLK-SLPPRV--FDSLTK----------------LTYLSLGYNELQ-SLPKGV- 152
Query: 338 F--LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395
F L ++ L L+NN+L ++L+ L L+ N + +P +SL+ L +L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQ 211
Query: 396 LKSN 399
L+ N
Sbjct: 212 LQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L+L +N+L+ ++LR+L L N + +P I + L+NL L + NK
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQ-A 99
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI- 462
+P L + L L N+L ++P + D L L L+L N L + +
Sbjct: 100 LP----IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVF 153
Query: 463 GELTSLDFLDLSRNLFSGSIPCSL-SQLSGLGVLDLSYNNLSGKIPSGT 510
+LTSL L L N +P +L+ L L L N L ++P G
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157
F+ T + L L+DN L + L F+ + +L++L+++D++L+ F +
Sbjct: 57 FHRLTKLRLLYLNDNKLQT-------LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF---SSLEA 214
+L +LRL N+L +V +L+ L L L +N+ +P G F +SL+
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQS-LPK-GVFDKLTSLKE 161
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
L N L + + +L++L++L LD N L+ +P+ +D K
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK---------------RVPEGAFDSLEK 206
Query: 275 LSYLNLSNN 283
L L L N
Sbjct: 207 LKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 63/242 (26%)
Query: 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL 192
K L L ++L K F + L+ L L+ NKL + + + L +LE L
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------NLETL 90
Query: 193 YLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252
++ N +L G D QL L L LD N L+++
Sbjct: 91 WVTDNKLQ----------ALPI---------GVFD----QLVNLAELRLDRNQLKSLP-- 125
Query: 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCW 312
P F L+ L+YL+L N + LP FD L+S
Sbjct: 126 ------------PRVFDSLTK-LTYLSLGYNELQ-SLPKGV--FDKLTS----------- 158
Query: 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372
L L L NN+L + L + TL L NN+L + +L++L L+
Sbjct: 159 -----LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 373 KN 374
+N
Sbjct: 214 EN 215
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 69/361 (19%), Positives = 120/361 (33%), Gaps = 58/361 (16%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM---- 156
+ +LDLS NNL S S + S+ SL LS + L +
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAI 78
Query: 157 -CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGP-IPHLGGF----- 209
++ L LS N LS + S + + + ++ L L WNDF+
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVK-TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 210 SSLEAWSLDVNCLNGTIDKSLSQL-----SKLESLSLDGNSLRAISLCILTSPIGISDSI 264
+S+ + +L N L L Q+ + + SL+L GN+L + + L +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA----- 192
Query: 265 PDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLA 324
+ ++ L+LS N S L+ H + LNL
Sbjct: 193 -----SIPASVTSLDLSAN-----------LLGLKSYAELAYIFSSIPNH---VVSLNLC 233
Query: 325 NNRLSGK----IPDSMGFLNNIWTLNLHNNRLTGK-------LPSPLRNFSQLRVLDLEK 373
N L G + L ++ T+ L + + L + N ++ ++D
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293
Query: 374 NAIFGEIPTWIGESLQ----NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK 429
I I ++ V SL + +Q E + +R +
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353
Query: 430 L 430
L
Sbjct: 354 L 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 71/418 (16%), Positives = 115/418 (27%), Gaps = 108/418 (25%)
Query: 140 LSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN--SLEGLYLRWN 197
L+ + +F + L LS N L S L S+ L L N
Sbjct: 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGN 61
Query: 198 DFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSP 257
L L + + SL+L GN L S L
Sbjct: 62 SLGFK-----NSDEL-VQILAAIP------------ANVTSLNLSGNFLSYKSSDELVKT 103
Query: 258 IGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDR 317
+ + ++ L+L N F SS+ +
Sbjct: 104 LA----------AIPFTITVLDLGWNDF-----------SSKSSSEFKQAFSNLPAS--- 139
Query: 318 LFILNLANNRLSGK----IPDSMGFLN-NIWTLNLHNNRLTGK----LPSPLRNF-SQLR 367
+ LNL N L K + + + N+ +LNL N L K L L + + +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
LDL N + G + S H V L+L
Sbjct: 200 SLDLSANLL--------GLKSYAELAYIFSSIPNH-----------------VVSLNLCL 234
Query: 428 NKLDGAIPEEIMDLVG----LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483
N L G E + L L + L + + ++ L
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYD--------IVKNMSKEQCKALGA-------- 278
Query: 484 CSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEEST 541
+ + + ++D + + PS + S +G ++ L N CL
Sbjct: 279 -AFPNIQKIILVDKNGKEIH---PSHSIPISNLIRELSGKADV--PSLLNQCLIFAQK 330
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 26/202 (12%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM-- 156
+ +I LDL N+ S S + S+ SL L ++L +
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA--SITSLNLRGNDLGIKSSDELIQILA 163
Query: 157 ---CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGP-IPHLGGF--- 209
++ L L N L+ + + + S+ L L N L
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAK-FLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222
Query: 210 --SSLEAWSLDVNCLNGT----IDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDS 263
+ + + +L +NCL+G + L L+++ LD + ++ +S + + +
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA---LGAA 279
Query: 264 IPDWFWDLSNKLSYLNLSNNHF 285
P+ K+ ++ +
Sbjct: 280 FPN-----IQKIILVDKNGKEI 296
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
NL +I + L N + + AF L+ + LS++++ P F + S
Sbjct: 29 NLPETITEIRLEQNTIKV-------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFS---SLEAW 215
L L L NK++ + + L SL+ L L N + F +L
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLF------SLQLLLLNANKINC-LRV-DAFQDLHNLNLL 133
Query: 216 SLDVNCLNGTIDKSLSQLSKLESLSLDGN 244
SL N L + S L ++++ L N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG 403
+ L N + P + +LR +DL N I E+ + L++L L L NK
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 404 NIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI 462
FE L ++ L L++NK+ + + L L L+L N L
Sbjct: 95 LPKSLFEG-----LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 463 GELTSLDFLDLSRNLFSGSIPCSLSQLS 490
L ++ + L++N F C L L+
Sbjct: 149 SPLRAIQTMHLAQNPFICD--CHLKWLA 174
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 36/160 (22%)
Query: 216 SLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275
L+ N + + S KL + L N + ++ PD F L + L
Sbjct: 38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--------------PDAFQGLRS-L 82
Query: 276 SYLNLSNNHFRGKLPDLSLR-FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334
+ L L N K+ +L F+ L S L +L L N+++ D
Sbjct: 83 NSLVLYGN----KITELPKSLFEGLFS----------------LQLLLLNANKINCLRVD 122
Query: 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
+ L+N+ L+L++N+L ++ + L +N
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP 357
L N + P + + +L ++L+NN++S PD+ L ++ +L L+ N++T
Sbjct: 38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97
Query: 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
S L++L L N I + + L NL +LSL NK
Sbjct: 98 SLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ 141
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 66/275 (24%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
SI+ + +++++ S ++ Q++ ++ L+L+ ++L P N+ +L
Sbjct: 46 NSIDQIIANNSDIKS---------VQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L L NK +++LS + L+ L L N + I L LE+ L N
Sbjct: 95 LFLDENK--------VKDLSSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK 145
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN--KLSYLN 279
+ T LS+L+KL++LSL+ N + I L+ KL L
Sbjct: 146 I--TDITVLSRLTKLDTLSLEDNQISDIV-------------------PLAGLTKLQNLY 184
Query: 280 LSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339
LS N + DL L+ L +L L + K + L
Sbjct: 185 LSKN----HISDLR----ALA-------------GLKNLDVLELFSQECLNKPINHQSNL 223
Query: 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
T+ + L P + + +++ +
Sbjct: 224 VVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
NL ++ + + LN+I + +N+ + + ++ + L L N + +I
Sbjct: 29 DNLKKKSVTDAVTQNE--LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL-TDI 83
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
+L+NL L L NK ++ L ++ L L N + + ++
Sbjct: 84 KPL--ANLKNLGWLFLDENKVK-DLSSL------KDLKKLKSLSLEHNGI--SDINGLVH 132
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
L L +L L N +T IT + LT LD L L N S I L+ L+ L L LS N
Sbjct: 133 LPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 188
Query: 501 NLS 503
++S
Sbjct: 189 HIS 191
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 64/277 (23%)
Query: 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289
++ +L S+ T + ++ N + + +N+ + +
Sbjct: 20 DDAFAETIKDNLKKKSV--------TDAVTQNEL---------NSIDQIIANNSDIK-SV 61
Query: 290 PDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345
+ + L+ N L+ P + L L L N++ + S+ L + +L
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DL-SSLKDLKKLKSL 117
Query: 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI 405
+L +N ++ + + L + QL L L N I + L
Sbjct: 118 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKI---------TDITVL-------------- 152
Query: 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGEL 465
S L + L L N++ +P + L L L LS+NH++ + + L
Sbjct: 153 ---------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGL 199
Query: 466 TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
+LD L+L S L + + +L
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 66/277 (23%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+L ++ + + S+ + ++S+++ + + ++ K
Sbjct: 24 AETIKDNLKKKSV---------TDAVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTK 72
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L L+ NKL+ I+ L+ + +L L+L N + L L++ SL+ N
Sbjct: 73 LFLNGNKLT-----DIKPLAN---LKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG 123
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN--KLSYLN 279
++ I+ L L +LESL L N + I+ LS KL L+
Sbjct: 124 IS-DIN-GLVHLPQLESLYLGNNKITDIT-------------------VLSRLTKLDTLS 162
Query: 280 LSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339
L +N + L+ +L L L+ N +S + G L
Sbjct: 163 LEDNQIS-DIVPLA--------------------GLTKLQNLYLSKNHIS-DLRALAG-L 199
Query: 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
N+ L L + K + N + ++
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 56/324 (17%), Positives = 103/324 (31%), Gaps = 89/324 (27%)
Query: 155 NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEA 214
K L + + +NS++ + +D + + ++
Sbjct: 22 AFAETIKDNLKKKS--------VTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVTK 72
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAIS-LCILTSPIGISDSIPDWFWDLSN 273
L+ N L K L+ L L L LD N ++ +S L L
Sbjct: 73 LFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLK------------------ 112
Query: 274 KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP 333
KL L+L +N + L H +L L L NN+++
Sbjct: 113 KLKSLSLEHNGIS-DINGLV--------------------HLPQLESLYLGNNKIT--DI 149
Query: 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393
+ L + TL+L +N+++ + PL ++L+ L L KN I L+ L
Sbjct: 150 TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHI---------SDLRAL-- 196
Query: 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453
+ L + L+L S + +LV + +
Sbjct: 197 ---------------------AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235
Query: 454 LTGPITPKIGELTSLDFLDLSRNL 477
L P I + + ++ +L
Sbjct: 236 LVTPEI--ISDDGDYEKPNVKWHL 257
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 24/183 (13%)
Query: 323 LANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382
+ D NL +T + + + + I
Sbjct: 9 TVPTPIKQIFSDDA--FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-----K 59
Query: 383 WIG--ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
+ + L N+ L L NK +I + + L + L L NK+ + D
Sbjct: 60 SVQGIQYLPNVTKLFLNGNKLT-DI------KPLANLKNLGWLFLDENKVKDL--SSLKD 110
Query: 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
L L +L+L N ++ I + L L+ L L N + I LS+L+ L L L N
Sbjct: 111 LKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDN 166
Query: 501 NLS 503
+S
Sbjct: 167 QIS 169
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 50/187 (26%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
++ L L++N L F+ + L+ + S++++ F
Sbjct: 29 HIPQYTAELRLNNNEFTV------LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
+ ++ L+ N+L ++ + L SL+ L LR N T +
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLE------SLKTLMLRSNRIT----------CVG----- 121
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
N + LS + LSL N + + G D++ LS L
Sbjct: 122 ----NDSFIG----LSSVRLLSLYDNQITTV-------APGAFDTLH--------SLSTL 158
Query: 279 NLSNNHF 285
NL N F
Sbjct: 159 NLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 38/162 (23%)
Query: 192 LYLRWNDFTGPIPHLGGFS---SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRA 248
L L N+FT + G F L + N + + + S + + L N L
Sbjct: 37 LRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 249 ISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGL 308
+ + F L + L L L +N + + S F LSS
Sbjct: 96 V-------QHKM-------FKGLES-LKTLMLRSNRIT-CVGNDS--FIGLSS------- 130
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN 350
+ +L+L +N+++ P + L+++ TLNL N
Sbjct: 131 ---------VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 298 DLSSNLLSGGLPDCWLH-FDRLFILNLANNRLSGKIPDSMGF--LNNIWTLNLHNNRLTG 354
L++N + +L +N +NN+++ I + F + + + L +NRL
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGA-FEGASGVNEILLTSNRLEN 95
Query: 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
+ L+ L L N I + L ++ +LSL N+
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 423 LDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSG 480
L L++N+ I L L +N S N +T I + ++ + L+ N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE- 94
Query: 481 SIPCSL-SQLSGLGVLDLSYNNLSGKIPSGT 510
++ + L L L L N ++ + + +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLS 426
L L N T I + L L ++ +NK FE V + L+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----ASGVNEILLT 89
Query: 427 SNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPC 484
SN+L+ + ++ L L L L N +T + L+S+ L L N + ++
Sbjct: 90 SNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAP 146
Query: 485 -SLSQLSGLGVLDLSYNN 501
+ L L L+L N
Sbjct: 147 GAFDTLHSLSTLNL-LAN 163
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 42/153 (27%)
Query: 226 IDKSLSQLSKLESLSLDGNSLRAIS-LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNH 284
+D +LS L + L+L N++ IS L + L L+L N
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLSGME------------------NLRILSLGRNL 81
Query: 285 FRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWT 344
+ + ++L + D L L ++ N+++ + + L N+
Sbjct: 82 IK--------KIENLDAVA------------DTLEELWISYNQIA-SL-SGIEKLVNLRV 119
Query: 345 LNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAI 376
L + NN++T L +L L L N +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L+ + K+ + L + L L N I +I + ++NL +LSL N
Sbjct: 30 LHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISSL--SGMENLRILSLGRNLIK-- 83
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP-ITPKIG 463
+ EN L L +S N++ I LV L L +S N +T K+
Sbjct: 84 ---KIENLDAVADTL-EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLA 137
Query: 464 ELTSLDFLDLSRN 476
L L+ L L+ N
Sbjct: 138 ALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 40/143 (27%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ + L LS NN+ + + M +L+ L L + ++ I +L++
Sbjct: 48 KACKHLALSTNNIEK---------ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L +SYN+++ + + + +L LY+ N + + ++
Sbjct: 98 LWISYNQIA-----SLSGIE---KLVNLRVLYMSNN-------KITNWGEID-------- 134
Query: 222 LNGTIDKSLSQLSKLESLSLDGN 244
L+ L KLE L L GN
Sbjct: 135 -------KLAALDKLEDLLLAGN 150
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 38/147 (25%)
Query: 229 SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288
+ + L L G + I + ++ + ++ S+N R K
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIE--------NLGATLD--------QFDAIDFSDNEIR-K 56
Query: 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348
L RL L + NNR+ L ++ L L
Sbjct: 57 LDGFP--------------------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96
Query: 349 NNRLTG-KLPSPLRNFSQLRVLDLEKN 374
NN L PL + L L + +N
Sbjct: 97 NNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 278 LNLSNNHFR--GKLPDL-SLRFDDLSSNLLS--GGLPDCWLHFDRLFILNLANNRLSGKI 332
+ L+ + + R DL + L D+ ++ ++N + K+
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIR-KL 57
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI--FGEIPTWIGESLQN 390
D L + TL ++NNR+ + L L L N++ G++ SL++
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKS 114
Query: 391 LIVLSLKSN 399
L L + N
Sbjct: 115 LTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476
R LDL K+ I L A++ S N + + L L L ++ N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNN 74
Query: 477 LFSGSIPCSLSQLSGLGVLDLSYNNLS 503
L L L L+ N+L
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLV 101
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 97 HFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM 156
H + ++ L + + L L+ + + L++L + S L P F
Sbjct: 26 HLPGAENLTELYIENQQHLQH------LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79
Query: 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT 200
L +L LS+N L + +Q L SL+ L L N
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGL-------SLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 349 NNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQ 408
L L L +E + L L L++ + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455
F + L+LS N L+ ++ + + + L L LS N L
Sbjct: 76 FHF-----TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Query: 325 NNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS-PLRNFSQLRVLDLEKNAIFGEIPTW 383
+ + N+ L + N + L LR +LR L + K+ + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74
Query: 384 IGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419
L L+L N + L L
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 317 RLFILNLANNRLSGKIPD-SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375
L L + N + + + L + L + + L P +L L+L NA
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 376 IFGEIPTWIGESLQNLIVLSLKSNKFH 402
+ + + L +L L L N H
Sbjct: 92 L-ESLSWKTVQGL-SLQELVLSGNPLH 116
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373
F L L+L N L + ++ L + L L NR+ G L L L+L
Sbjct: 47 EFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 374 NAI--FGEIPTWIGESLQNLIVLSLKSN 399
N + + + L+ L L L +
Sbjct: 105 NKLKDISTLEPL--KKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 273 NKLSYLNLSNNHFR-GKLPDLSLRFD-----DLSSNLLS--GGLPDCWLHFDRLFILNLA 324
+ L L N GK+ L+ F L + L LP +L L L+
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELS 79
Query: 325 NNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAI 376
NR+ G + L N+ LNL N+L PL+ L+ LDL +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 420 VRCLDLSSNKLD-GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
VR L L + K + G I + V L L+L L + +L L L+LS N
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRI 83
Query: 479 SGSIPCSLSQLSGLGVLDLSYNNLS 503
G + +L L L+LS N L
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
++E L L + L S + + LK L LS++ + GG+ + +L
Sbjct: 49 VNLEFLSLINVGLIS---------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99
Query: 162 LRLSYNKLS 170
L LS NKL
Sbjct: 100 LNLSGNKLK 108
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373
F+ L L+ N L+ I + + LN + L L +NR++G L L L+L
Sbjct: 40 EFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97
Query: 374 NAIFGEIPTWIG-ESLQNLIVLSLKSN 399
N I ++ T + L+NL L L +
Sbjct: 98 NKI-KDLSTIEPLKKLENLKSLDLFNC 123
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 56/223 (25%)
Query: 155 NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEA 214
+ + K L ++ + + ++ ++ ++ + + F++L+
Sbjct: 17 GLANAVKQNLGKQSVTD-----LVSQKE---LSGVQNFNGDNSNIQS-LAGMQFFTNLKE 67
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN- 273
L N ++ + L L+KLE LS++ N L+ ++ + +
Sbjct: 68 LHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLN-------------------GIPSA 106
Query: 274 KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP 333
LS L L NN +L D L H L IL++ NN+L I
Sbjct: 107 CLSRLFLDNN----ELRDTD----SLI-------------HLKNLEILSIRNNKLK-SI- 143
Query: 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
+GFL+ + L+LH N +T L ++ +DL
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 50/281 (17%), Positives = 89/281 (31%), Gaps = 51/281 (18%)
Query: 230 LSQLSKLESLSLDGNSLRAIS-LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288
L+ +L S+ + L+ + N N++ +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQKELS------------------GVQNFNGDNSNIQ-S 55
Query: 289 LPDLS----LRFDDLSSNLLS--GGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI 342
L + L+ LS N +S L D +L L++ NRL +
Sbjct: 56 LAGMQFFTNLKELHLSHNQISDLSPLKDL----TKLEELSVNRNRLKNLNGIP---SACL 108
Query: 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH 402
L L NN L L + L +L + N + I + L L VL L N+
Sbjct: 109 SRLFLDNNELRD--TDSLIHLKNLEILSIRNNKL-KSIV--MLGFLSKLEVLDLHGNEIT 163
Query: 403 GNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK- 461
+ L V +DL+ K + E + L N ++ I+P
Sbjct: 164 -------NTGGLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYY 213
Query: 462 IGELTSLDFLDLSRNL--FSGSIPCSLSQLSGLGVLDLSYN 500
I S + L ++ + S+ +G + ++
Sbjct: 214 ISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFD 254
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 56/269 (20%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ +L ++ +L + + + +++ +S ++ +LK+
Sbjct: 19 ANAVKQNLGKQSVT---------DLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKE 67
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
L LS+N++S + L + LE L + N + +L G S L ++
Sbjct: 68 LHLSHNQIS-----DLSPLKD---LTKLEELSVNRN----RLKNLNGIPSACLSRLFLDN 115
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN--KLSYLN 279
SL L LE LS+ N L++I L KL L+
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLKSIV-------------------MLGFLSKLEVLD 156
Query: 280 LSNNHFRGKLPDLS----LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335
L N L+ + + DL+ + + L+I N + G+
Sbjct: 157 LHGNEIT-NTGGLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKD-PDGRWISP 211
Query: 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFS 364
N + + + +LP S
Sbjct: 212 YYISNGG---SYVDGCVLWELPVYTDEVS 237
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP 406
+ ++ P + +L K ++ + + L + + ++ ++
Sbjct: 4 QRPTPIN-QV-FPDPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQ-SL- 56
Query: 407 YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466
++ L LS N++ P + DL L L+++RN L
Sbjct: 57 -----AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK---NLNGIPSA 106
Query: 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
L L L N SL L L +L + N L
Sbjct: 107 CLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 321 LNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380
L+L + L+ + L + LNL N+L + ++L L L N + +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD 440
P + + L L L L N+ F+ L ++ L L++N+L +IP D
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-----LTKLKELRLNTNQL-QSIPAGAFD 152
Query: 441 -LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476
L L L+LS N L L L + L N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 41/194 (21%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ E LDL L + L+ F+ + L L L ++L+ F ++
Sbjct: 32 GIPADTEKLDLQSTGLAT-------LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSS---LEAW 215
L L L+ N+L + F + L+ LYL N +P G F L+
Sbjct: 85 LGTLGLANNQL-----ASLPLGVFDHLTQ-LDKLYLGGNQLKS-LPS-GVFDRLTKLKEL 136
Query: 216 SLDVNCL----NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDL 271
L+ N L G DK L+ L++LSL N L+ S+P +D
Sbjct: 137 RLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQ---------------SVPHGAFDR 177
Query: 272 SNKLSYLNLSNNHF 285
KL + L N F
Sbjct: 178 LGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
L+L + L + R ++L L+L+ N + + + + L L L L +N+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 405 IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-LVGLIALNLSRNHLTGPITPKIG 463
F++ + L L N+L ++P + D L L L L+ N L
Sbjct: 99 PLGVFDHLTQLDK-----LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 464 ELTSLDFLDLSRNLFSGSIP 483
+LT+L L LS N S+P
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVP 171
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 98 FNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157
++ L L N L + A + + +L L L+ ++L+ F +
Sbjct: 59 IQYLPNVRYLALGGNKLHD---------ISALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSL---EA 214
+LK+L L N+L V L+ +L L L N +P G F L
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQS-LPK-GVFDKLTNLTE 161
Query: 215 WSLDVNCL----NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWD 270
L N L G DK L++L+ L L N L+ S+PD +D
Sbjct: 162 LDLSYNQLQSLPEGVFDK----LTQLKDLRLYQNQLK---------------SVPDGVFD 202
Query: 271 LSNKLSYLNLSNN 283
L Y+ L +N
Sbjct: 203 RLTSLQYIWLHDN 215
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 3e-05
Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 43/214 (20%)
Query: 194 LRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGN-----SLRA 248
+ W + P L L + + L+SL + +
Sbjct: 156 ISWIEQVDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212
Query: 249 ISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGL 308
I L + L L L D + +
Sbjct: 213 ILGSDLPN------------------LEKLVLYVG-VEDYGFDGDM--NVFRPLFSKDRF 251
Query: 309 PDCWLHFDRLFILNLANNRLSGKIPDSMG---FLNNIWTLNLHNNRLTGK----LPSPLR 361
P L L + + + + L + T+++ LT + L +
Sbjct: 252 P-------NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 362 NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395
L+ ++++ N + E+ + +SL I +S
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 6e-05
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES----LQ 389
D L+ + LN + T L + L+ L++ + + I S L+
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 390 NLIVLSLKSNKFHGNIPYQFENEYKST-LGLVRCLDLSSNKLDGAIPEEIMD---LVGLI 445
L++ + F + ++ L + + + E ++ L L
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 446 ALNLSRNHLTG----PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQ 488
+++S LT + + ++ L F+++ N S + L +
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-04
Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 10/151 (6%)
Query: 56 LNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLS--DNN 113
LN + + +++ +LKSL + S LP I +L ++E L L +
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVED 232
Query: 114 LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGN---MCSLKKLRLSYNKLS 170
L + +LK L + D+E + + + F + L+ + +S L+
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292
Query: 171 GQYSQVIQNLSFGCVVNS-LEGLYLRWNDFT 200
+ + L L+ + +++N +
Sbjct: 293 ---DEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 101/657 (15%), Positives = 202/657 (30%), Gaps = 184/657 (28%)
Query: 1 NQYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFETSNINTFFLNTVS 60
+ + H+ + Q D+L V + F+ ++ S
Sbjct: 2 HHHHHMDFETGEHQYQYKDIL-------SVFEDAFV-------DNFDCKDVQDM---PKS 44
Query: 61 VTKSSDWFQVVAKLHSL-KSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSV 119
+ + ++ ++ +L LF L + F +E + L N
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKF-----VEEV-LRIN------- 90
Query: 120 YPWLLN-LKAFQHMVSLKS-LYLSDSE-LEGGIPKFF-GNMCSLKKLRLSYNKLSGQYSQ 175
Y +L++ +K Q S+ + +Y+ + L F N+ L+ Y KL Q
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----YLKLR----Q 142
Query: 176 VIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF--SSLEAWSLDVNCLNGTIDK----- 228
+ L V ++G+ G + + DV CL+ +
Sbjct: 143 ALLELRPAKNV-LIDGV--------------LGSGKTWVAL---DV-CLSYKVQCKMDFK 183
Query: 229 ----SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNH 284
+L + E++ L TS S +I + +L L S +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 285 FRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD---RLFILNLANNRLSGKIPDSMGFLNN 341
L L ++ + W F+ + IL + ++ D +
Sbjct: 244 ENC-LLVL----LNVQN-------AKAWNAFNLSCK--ILLTTRFK---QVTDFLSAATT 286
Query: 342 I-WTLNLHNNRLT-GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399
+L+ H+ LT ++ S L + R DL + + P + +I S++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS-----IIAESIRDG 340
Query: 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT 459
+ ++ N K L ++ S N L+ P E + L++ I
Sbjct: 341 LATWD-NWKHVNCDK----LTTIIESSLNVLE---PAEYRKM--FDRLSVFPPSA--HIP 388
Query: 460 PKI-----GELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQS 514
+ ++ D + + +++L +++ + IPS +
Sbjct: 389 TILLSLIWFDVIKSDVMVV------------VNKLHKYSLVEKQPKESTISIPS---IY- 432
Query: 515 FNASVYAGNLELCGLP-----LANMCLDEESTPGPGTDDDSDTLEDEDDQFITLGFYVSS 569
LEL L +D + P T D D + DQ+ FY
Sbjct: 433 ---------LELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQY----FY--- 474
Query: 570 ILSFFVGF----WGVSGTLMLNRSWSYGYFNFLTGMKDWVSVISAVNISKLQRKFRN 622
+G + L R + +F + L++K R+
Sbjct: 475 ---SHIGHHLKNIEHPERMTLFRMV---FLDF-----RF-----------LEQKIRH 509
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 44/292 (15%), Positives = 95/292 (32%), Gaps = 62/292 (21%)
Query: 20 LLINL-GQHLEVNIERLQELVLGLGKFFETSNINTFFLNTVSVTKSSDWFQVVAKLHSLK 78
+++ + + + K + T ++++V + ++ ++
Sbjct: 328 RRLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAE-YR-----KMFD 376
Query: 79 SLVLF--SCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLK 136
L +F S +P + S IW F++ + + N L S L+ + + +S+
Sbjct: 377 RLSVFPPSAHIPTILLSLIW-FDVIK--SDVMVVVNKLHKYS----LVEKQPKESTISIP 429
Query: 137 SLYLSDSELEGGIPKFFGNMCSL-KKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLR 195
S+YL EL+ + N +L + + YN + + L+ Y
Sbjct: 430 SIYL---ELKVKLE----NEYALHRSIVDHYNIPKT-FDS------DDLIPPYLDQ-YFY 474
Query: 196 WNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILT 255
G HL E +L + LD L + +
Sbjct: 475 S--HIGH--HLKNIEHPERMTL------------------FRMVFLDFRFLEQ-KIRHDS 511
Query: 256 SPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF-DDLSSNLLSG 306
+ S SI + L Y+ ++ + + + L F + NL+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICS 562
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 61/384 (15%), Positives = 125/384 (32%), Gaps = 62/384 (16%)
Query: 64 SSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPW 122
+ + A +LK L L + V+ ++ HF + TS+ +L++S
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--------LAS 196
Query: 123 LLNLKAFQHMV----SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSY--NKLSGQYSQV 176
++ A + +V +LKSL L+ + + L++L ++
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256
Query: 177 IQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG-GFSSLEAWSLDVNCLNGT---IDKSLSQ 232
+ GC L L W+ +P + S L +L+++ + K L Q
Sbjct: 257 LSVALSGC--KELRCLSGFWDAVPAYLPAVYSVCSRLT--TLNLSYATVQSYDLVKLLCQ 312
Query: 233 LSKLESLSLDGN--------------SLRAISLC-----ILTSPIGISDSIPDWFWDLSN 273
KL+ L + LR + + ++ + +++
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372
Query: 274 KLSYLNLSNNHF-----------RGKLPDLSLRF------DDLSSNLLSGGLPDCWLHFD 316
KL + R + L D L+ L G H
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 317 RLFILNLANNRLSGKIPDSMG-FLNNIWTLNLHNNRLTGK-LPSPLRNFSQLRVLDLEKN 374
L L+L+ L+ K+ + +G + + L++ + + L LR L++
Sbjct: 433 DLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491
Query: 375 AIFGEIPTWIGESLQNLIVLSLKS 398
+ L+ + L + S
Sbjct: 492 PFGDKALLANASKLETMRSLWMSS 515
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 19/149 (12%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ T+ + L L DN + L F +++LK LYL ++L F ++
Sbjct: 37 GIPTNAQILYLHDNQITK-------LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF---SSLEAW 215
L L L N+L+ S V L L+ L++ N T +P G + L
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLV------HLKELFMCCNKLTE-LPR--GIERLTHLTHL 140
Query: 216 SLDVNCLNGTIDKSLSQLSKLESLSLDGN 244
+LD N L + +LS L L GN
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 41/303 (13%), Positives = 87/303 (28%), Gaps = 54/303 (17%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMV-SLKSLYLSDSELEGGIPKFFG----- 154
+++ ++L+ L + L+ + + L L + L K
Sbjct: 100 RHALDEVNLASCQLDPAG-------LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152
Query: 155 NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVN-SLEGLYLRWNDFTGPIPHLGGFSSLE 213
+ C + LRLS N L+ + + L G N S+ L L
Sbjct: 153 DQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLG------------- 196
Query: 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN 273
D + L + +L+ L++ N + L S
Sbjct: 197 ----DEGL--ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS---------- 240
Query: 274 KLSYLNLSNNHFR---GKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG 330
L L+L N ++ + + ++ + IL+ L+
Sbjct: 241 -LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299
Query: 331 KIPDSMGFLNNIWTLNLHNNRLT----GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386
+ + +L ++R + LR ++R L + + +W
Sbjct: 300 WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359
Query: 387 SLQ 389
+
Sbjct: 360 QFE 362
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ + L L N K + L + LS++ + + F NM
Sbjct: 28 GIPRDVTELYLDGNQFTLVP--------KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSL 212
L L LSYN+L + I +F + + L L L ND + +P G F+ L
Sbjct: 80 LLTLILSYNRL-----RCIPPRTFDGLKS-LRLLSLHGNDISV-VPE-GAFNDL 125
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 51/185 (27%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ LDL N+L S L F + SL LYL ++L+ F + S
Sbjct: 25 GIPAQTTYLDLETNSLKS-------LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L L LS N+L + V L+ L+ L L N +P
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLT------QLKELALNTNQLQS-LPD------------- 117
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
G DK L++L+ L L N L+ S+PD +D L Y+
Sbjct: 118 -----GVFDK----LTQLKDLRLYQNQLK---------------SVPDGVFDRLTSLQYI 153
Query: 279 NLSNN 283
L +N
Sbjct: 154 WLHDN 158
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.54 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.53 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.49 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.46 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.44 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.37 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.33 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.3 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.14 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.11 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.05 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.03 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.89 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.67 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.37 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.28 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.24 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.15 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.87 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.77 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.55 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.12 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=546.06 Aligned_cols=515 Identities=30% Similarity=0.428 Sum_probs=376.7
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCC-----------CCCCccEEEcCCcccCCCCcchHhh
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFF-----------ETSNINTFFLNTVSVTKSSDWFQVV 71 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-----------~~~~L~~L~Ls~n~l~~~~~~~~~l 71 (622)
++++++|+++++.+.+.+|..+ ..++++|++||+++|.++ ++++|++|++++|.+++... +
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~ 196 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----V 196 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCS----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----C
T ss_pred CCCCCEEECcCCccCCcCCHHH----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----c
Confidence 4566777777776644333222 235666666666666653 22556666666665555422 2
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhccc----------------ccCCCccc
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK----------------AFQHMVSL 135 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~----------------~l~~l~~L 135 (622)
.++++|++|++++|.+++..+ . +.++ ++|++|++++|.+++ .+|..+..+. ....+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIP--F-LGDC-SALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCC--B-CTTC-CSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCc--c-cccC-CCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCC
Confidence 455555555555555555444 2 4455 555555555555554 3333331110 00134455
Q ss_pred cEEEeecccCCCCCchhhcCC-ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCCCCC
Q 037539 136 KSLYLSDSELEGGIPKFFGNM-CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSL 212 (622)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l~~L 212 (622)
++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.. +++ |++|++++|.+.+.+|. +..+++|
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~-L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-----CSL-LESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-----CTT-CCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-----CCC-ccEEECCCCcccCcCCHHHHhcCCCC
Confidence 555555555555555555443 56666666666665555555333 333 66666666666554443 5666666
Q ss_pred CEEEeecccCCccCccccCCCC-CCCEEEccCCCCccccccc--------c----cCCCCcccCCchhHHhcCCCCcEEE
Q 037539 213 EAWSLDVNCLNGTIDKSLSQLS-KLESLSLDGNSLRAISLCI--------L----TSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 213 ~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~--------~----~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
++|++++|.+++.+|..+..++ +|++|++++|.+++..... + ++.+.+++.+|..+... ++|+.|+
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 424 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLH 424 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEE
Confidence 6666666666655666665555 6666666666554322111 1 56666777788777664 5899999
Q ss_pred ccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC
Q 037539 280 LSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 280 l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
+++|++.+..|.. +|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 9999988877753 79999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHh----------------------
Q 037539 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE---------------------- 412 (622)
Q Consensus 355 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------- 412 (622)
.+|..++.+++|++|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+...
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 9999999999999999999999888998877 79999999999999998887654210
Q ss_pred -------------------------------------------HhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 413 -------------------------------------------YKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 413 -------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
.+..+++|+.|||++|++++.+|..+++++.|+.|+|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 1123578999999999999999999999999999999
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCC
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGL 529 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 529 (622)
++|.+++.+|..++++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|.+.++.++....+.|||.+||.
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 037539 530 PLANMCLDEE 539 (622)
Q Consensus 530 ~~~~~C~~~~ 539 (622)
|.. .|....
T Consensus 744 ~l~-~C~~~~ 752 (768)
T 3rgz_A 744 PLP-RCDPSN 752 (768)
T ss_dssp TSC-CCCSCC
T ss_pred CCc-CCCCCc
Confidence 886 785443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=505.07 Aligned_cols=492 Identities=30% Similarity=0.426 Sum_probs=376.4
Q ss_pred CccccCCCCcccchhhHHHHH--hhcccccccCcCCcEEeCCCCCCC---------CCCCccEEEcCCcccCCC-CcchH
Q 037539 2 QYKHIPHTSNSQQNFIVDLLI--NLGQHLEVNIERLQELVLGLGKFF---------ETSNINTFFLNTVSVTKS-SDWFQ 69 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n~i~---------~~~~L~~L~Ls~n~l~~~-~~~~~ 69 (622)
+++++++|+++++.+.+.+|. .+. ++++|++|++++|.+. .+++|++|++++|.+++. +....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLG-----SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGG-----GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHh-----CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 457888899999888666665 555 8999999999998763 338899999999998887 44222
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCC
Q 037539 70 VVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 70 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
.+.++++|++|++++|.+.+..+ +..+ ++|++|++++|.+++ .+|. ++.+++|++|++++|.+++..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~l-~~L~~L~Ls~n~l~~-~~~~-------l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD----VSRC-VNLEFLDVSSNNFST-GIPF-------LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB----CTTC-TTCCEEECCSSCCCS-CCCB-------CTTCCSCCEEECCSSCCCSCH
T ss_pred hhccCCCCCEEECCCCcccccCC----cccC-CcCCEEECcCCcCCC-CCcc-------cccCCCCCEEECcCCcCCCcc
Confidence 37899999999999999887655 3677 999999999999986 4443 478899999999999999889
Q ss_pred chhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCC-CCCCCEEEeecccCCccCc
Q 037539 150 PKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGG-FSSLEAWSLDVNCLNGTID 227 (622)
Q Consensus 150 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~-l~~L~~L~L~~n~l~~~~~ 227 (622)
|..+..+++|++|++++|.+.+..|.. .+++ |++|++++|.+++.+|. +.. +++|++|++++|.+++..|
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l~~-L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL-------PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC-------CCTT-CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc-------ccCC-CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 999999999999999999998766642 3334 88888888887776666 544 4778888888888777777
Q ss_pred cccCCCCCCCEEEccCCCCccc-ccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcc---------
Q 037539 228 KSLSQLSKLESLSLDGNSLRAI-SLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG--------- 287 (622)
Q Consensus 228 ~~l~~l~~L~~L~l~~n~l~~~-~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--------- 287 (622)
..|+.+++|++|++++|.+++. +...+ ++.+.+++.+|..+....++|+.|++++|++.+
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 7777777888888887777632 21101 556666666777666554455555555555543
Q ss_pred -----------------cCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 288 -----------------KLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 288 -----------------~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
..|.. .|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 33321 46666666666666666666666777777777777766667777777777777
Q ss_pred eeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
++++|.+++..|..+..+++|++|++++|.+.+.+|.++. .+++|++|++++|++.+.+|..+. .+++|+.|++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L 545 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELG-----DCRSLIWLDL 545 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGG-----GCTTCCEEEC
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHc-----CCCCCCEEEC
Confidence 7777777777777777778888888888887667777766 678888888888888877777665 6888888888
Q ss_pred CCCcCCccchHHhh------------------------------------------------------------------
Q 037539 426 SSNKLDGAIPEEIM------------------------------------------------------------------ 439 (622)
Q Consensus 426 ~~n~l~~~~~~~~~------------------------------------------------------------------ 439 (622)
++|++++.+|..+.
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 88888776665442
Q ss_pred ----cccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCc
Q 037539 440 ----DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQS 514 (622)
Q Consensus 440 ----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~ 514 (622)
.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..++.+++|++||+++|+++|.+|.. ..+..
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 2467888999999999999999999999999999999999999999999999999999999999999875 45667
Q ss_pred cCcccccCCcC
Q 037539 515 FNASVYAGNLE 525 (622)
Q Consensus 515 l~~~~~~~n~~ 525 (622)
+..+.+++|+.
T Consensus 706 L~~L~ls~N~l 716 (768)
T 3rgz_A 706 LTEIDLSNNNL 716 (768)
T ss_dssp CSEEECCSSEE
T ss_pred CCEEECcCCcc
Confidence 77777777744
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=475.91 Aligned_cols=498 Identities=23% Similarity=0.198 Sum_probs=352.8
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCC---------CCCCCccEEEcCCcccCCC-CcchHhhcC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKF---------FETSNINTFFLNTVSVTKS-SDWFQVVAK 73 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i---------~~~~~L~~L~Ls~n~l~~~-~~~~~~l~~ 73 (622)
+++++|+++++.+ +.+ ....+.++++|++|||++|.. .++++|++|+|++|.+++. +. .|.+
T Consensus 24 ~~l~~LdLs~N~i-~~i----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~---~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYI-RTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---AFQG 95 (844)
T ss_dssp TTCCEEEEESCCC-CEE----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT---SSCS
T ss_pred CCcCEEECCCCcC-Ccc----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh---HccC
Confidence 4455667776664 222 122334777888888877732 3347788888888877777 66 6777
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++|++|+|++|.+++..+....+.++ ++|++|++++|.+++...+.. |+++++|++|++++|.+++..+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~------~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPS------FGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGG------GGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchh------HhhCCCCCEEECCCCcCCeeCHHHc
Confidence 888888888888777654411236666 788888888887765222222 3677788888888887777777777
Q ss_pred cCC--ccCcEeEeecCCCCCcCchhhhhcc--ccccCCCcCEEEccCCcccccCCC-C----------------------
Q 037539 154 GNM--CSLKKLRLSYNKLSGQYSQVIQNLS--FGCVVNSLEGLYLRWNDFTGPIPH-L---------------------- 206 (622)
Q Consensus 154 ~~l--~~L~~L~L~~n~i~~~~~~~~~~l~--l~~~~~~L~~L~L~~n~~~~~~~~-l---------------------- 206 (622)
..+ ++|+.|++++|.+.+..|..+.... +.. . +|++|++++|.+.+..+. +
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-M-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-C-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCcccc-C-ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 666 6777777777777766655432221 111 1 277888887765543332 1
Q ss_pred --------------CC--CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHh
Q 037539 207 --------------GG--FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWD 270 (622)
Q Consensus 207 --------------~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 270 (622)
.+ .++|+.|++++|.+.+..+..|..+++|++|++++|++++. .|..+ .
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------~~~~~-~ 311 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI--------------ADEAF-Y 311 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE--------------CTTTT-T
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC--------------ChHHh-c
Confidence 11 25677777777777777777777777777777777777632 12222 3
Q ss_pred cCCCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 271 LSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 271 ~~~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
.+++|++|++++|.+.+..|.. +|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L 386 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDI 386 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEE
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchh
Confidence 3457888888888877655532 678888888888777777777888888888888877632 236778888
Q ss_pred eeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 346 NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
++++|++. .+|.. ..+++.|++++|.+.+.-.......+++|++|++++|++++..+.... ..+++|+.|++
T Consensus 387 ~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~~~L~~L~L 458 (844)
T 3j0a_A 387 FLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----SENPSLEQLFL 458 (844)
T ss_dssp EEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS----CSCTTCCBCEE
T ss_pred ccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc----ccCCccccccC
Confidence 88888877 44432 467888888888884322222233689999999999999865543221 15789999999
Q ss_pred CCCcCC-----ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 426 SSNKLD-----GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 426 ~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++|.++ +..+..|..+++|++|+|++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999986 34456788999999999999999998889999999999999999999987777665 89999999999
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCCC-------------------CCCCCCCCCCCCCCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLPL-------------------ANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~-------------------~~~C~~~~~~~~~~~~~~~ 550 (622)
++++..|. .+..+..+.+.+||+.|+|+. .+.|..|....|....+..
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 603 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCC
T ss_pred cCCCCChh--HhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCc
Confidence 99988885 466888889999999998753 2578888877776655443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=460.63 Aligned_cols=502 Identities=20% Similarity=0.195 Sum_probs=355.0
Q ss_pred ccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 5 HIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
++++|+++++.+ ++++. ..++++++|++|++++|.+++. ++|++|++++|.++.. +. .|.+++
T Consensus 26 ~l~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~ 97 (680)
T 1ziw_A 26 NITVLNLTHNQL-RRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---TFAFCT 97 (680)
T ss_dssp TCSEEECCSSCC-CCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---TTTTCT
T ss_pred CCcEEECCCCCC-CCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---hhccCC
Confidence 566778887775 33332 2234789999999999988665 8899999999998888 44 688899
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhc-
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFG- 154 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~- 154 (622)
+|++|++++|.+++..+ ..+.++ ++|++|++++|.+++ ..|. .+..+++|++|++++|.+++..+..+.
T Consensus 98 ~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~Ls~n~l~~-~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKN--NPFVKQ-KNLITLDLSHNGLSS-TKLG------TQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TCSEEECCSSCCCCCCS--CTTTTC-TTCCEEECCSSCCSC-CCCC------SSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred CCCEEECCCCccCccCh--hHcccc-CCCCEEECCCCcccc-cCch------hhcccccCCEEEccCCcccccCHHHhhc
Confidence 99999999999888776 677888 899999999998876 3333 346788888888888888876666554
Q ss_pred -CCccCcEeEeecCCCCCcCchhhhhcc-c-----c----------------ccCC------------------------
Q 037539 155 -NMCSLKKLRLSYNKLSGQYSQVIQNLS-F-----G----------------CVVN------------------------ 187 (622)
Q Consensus 155 -~l~~L~~L~L~~n~i~~~~~~~~~~l~-l-----~----------------~~~~------------------------ 187 (622)
.+++|++|++++|.+++..|..+..+. + . ..+.
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 457888888888887776665543321 0 0 0012
Q ss_pred -CcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCccc------c------cc-
Q 037539 188 -SLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI------S------LC- 252 (622)
Q Consensus 188 -~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------~------~~- 252 (622)
+|++|++++|.+.+..+. ++.+++|++|++++|.+++..+..|..+++|++|++++|...+. + ..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 144445544444444433 44455555555555555444444444444555554444322110 0 00
Q ss_pred -----c-ccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc-CC--------CCcccEEeCCCCcCccccCccccCCCC
Q 037539 253 -----I-LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK-LP--------DLSLRFDDLSSNLLSGGLPDCWLHFDR 317 (622)
Q Consensus 253 -----~-~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--------~~~L~~L~ls~n~l~~~~~~~~~~~~~ 317 (622)
. -++.+.+++..+..+. .+++|++|++++|.+... ++ ...++.|++++|.+.+..+..+..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 0 0333444443333332 234666666666653311 11 015777777888888777888888888
Q ss_pred CCEEEccCCcccccCC-CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCccc--ccCchhHHhhcccccEe
Q 037539 318 LFILNLANNRLSGKIP-DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF--GEIPTWIGESLQNLIVL 394 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~--~~~~~~~~~~l~~L~~L 394 (622)
|+.|++++|++++.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+. +.+|..+. .+++|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEE
Confidence 9999999998876555 57788888999999998888777788888889999999888874 45566655 78999999
Q ss_pred ecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch--------HHhhcccccceeecCCccccCCCccccCCCC
Q 037539 395 SLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP--------EEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 395 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
++++|++++..+..+. .+++|++|++++|.+++..+ ..+.++++|++|+|++|.++...+..|.+++
T Consensus 486 ~Ls~N~l~~i~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 486 DLSNNNIANINDDMLE-----GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp ECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ECCCCCCCcCChhhhc-----cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 9999999877776665 78999999999999875422 2378889999999999999965556789999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC--cCCccCcccccCCcCCCCCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT--QLQSFNASVYAGNLELCGLPL 531 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~ 531 (622)
+|+.|+|++|++++..+..|..+++|++|++++|++++..|... .+..+..+.+.+||+.|+|+.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999998777778899999999999999987655421 467788889999999998864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-52 Score=454.95 Aligned_cols=495 Identities=20% Similarity=0.188 Sum_probs=247.0
Q ss_pred cCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCCC
Q 037539 6 IPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLHS 76 (622)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~ 76 (622)
+++|+++++.+ +++ ....++++++|++|++++|.+.+ +++|++|++++|.+++. +. .+.++++
T Consensus 35 l~~L~Ls~n~i-~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~ 106 (606)
T 3t6q_A 35 TECLEFSFNVL-PTI----QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET---ALSGPKA 106 (606)
T ss_dssp CCEEECTTCCC-SEE----CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT---TTSSCTT
T ss_pred CcEEEccCCcc-CcC----ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh---hhccccc
Confidence 44555665554 222 11223366666666666665532 26666666666666665 54 5666666
Q ss_pred CCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCC
Q 037539 77 LKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNM 156 (622)
Q Consensus 77 L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 156 (622)
|++|++++|.+++..+ ..+..+ ++|++|++++|+++++..|.. ..+++|++|++++|.+++..+..|+.+
T Consensus 107 L~~L~L~~n~i~~l~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDF--IPLHNQ-KTLESLYLGSNHISSIKLPKG-------FPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CCEEECTTSCCSCGGG--SCCTTC-TTCCEEECCSSCCCCCCCCTT-------CCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ccEeeccccCcccCCc--chhccC-CcccEEECCCCcccccCcccc-------cCCcccCEEEcccCcccccChhhhhhh
Confidence 6666666666666544 445555 666666666666665333322 236666666666666666556666666
Q ss_pred ccCc--EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc-------------------------cC-CC-CC
Q 037539 157 CSLK--KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-------------------------PI-PH-LG 207 (622)
Q Consensus 157 ~~L~--~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~-------------------------~~-~~-l~ 207 (622)
++|+ .|++++|.+++..|..+... +|++|++++|.... .+ +. +.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSA-------VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTC-------EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred cccceeEEecCCCccCccChhHhhhc-------cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 6666 66666666666555443221 12222222221000 00 00 00
Q ss_pred CCC--CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 208 GFS--SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 208 ~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
.+. +|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+.. +++|++|++++|.+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~lp~~l~~-l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---------------ELPSGLVG-LSTLKKLVLSANKF 313 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS---------------CCCSSCCS-CTTCCEEECTTCCC
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC---------------CCChhhcc-cccCCEEECccCCc
Confidence 010 3444555555555444444555555555555555544 23333222 23455555555555
Q ss_pred cccCCCC-----cccEEeCCCCcCccccCc-cccCCCCCCEEEccCCcccccC--CCccCCCCCccEEeeeCCcCCCCCC
Q 037539 286 RGKLPDL-----SLRFDDLSSNLLSGGLPD-CWLHFDRLFILNLANNRLSGKI--PDSMGFLNNIWTLNLHNNRLTGKLP 357 (622)
Q Consensus 286 ~~~~~~~-----~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~ 357 (622)
.+..|.. +|+.|++++|.+.+.++. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 4433311 455555555554433322 2445555555555555554333 3444555555555555555544444
Q ss_pred ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc---c
Q 037539 358 SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA---I 434 (622)
Q Consensus 358 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~ 434 (622)
..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+. .+++|++|++++|++.+. .
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-----GLPALQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-----TCTTCCEEECTTCBCGGGEECS
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-----CCCCCCEEECCCCCCCcccccc
Confidence 45555555555555555553333333222455555555555555544444333 455555555555555431 1
Q ss_pred hHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCC
Q 037539 435 PEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQ 513 (622)
Q Consensus 435 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 513 (622)
+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..++.| .|++++|++++..|.. ..+.
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 1334455555555555555554444555555555555555555555555555555555 5555555555433322 2233
Q ss_pred ccCcccccCCcCCCCCC------------------CCCCCCCCCCCCCCCCC
Q 037539 514 SFNASVYAGNLELCGLP------------------LANMCLDEESTPGPGTD 547 (622)
Q Consensus 514 ~l~~~~~~~n~~lc~~~------------------~~~~C~~~~~~~~~~~~ 547 (622)
.++.+.+.+||+.|+|+ ....|..|...+|....
T Consensus 548 ~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 548 QQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp TSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGG
T ss_pred CCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeee
Confidence 44444455555555443 22457777666655443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-51 Score=446.96 Aligned_cols=461 Identities=21% Similarity=0.202 Sum_probs=386.2
Q ss_pred CccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhc
Q 037539 2 QYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVA 72 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~ 72 (622)
+++++++|+++++.+.+-.|.. ++++++|++|++++|.+.+ +++|++|++++|.+++. +. .+.
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~---~~~ 126 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDT-----FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI---PLH 126 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS---CCT
T ss_pred cCccceEEECCCCccceeChhh-----ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc---hhc
Confidence 4678889999998763322333 4489999999999998743 39999999999999997 55 789
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCcccc--EEEeecccCCCCCc
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLK--SLYLSDSELEGGIP 150 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~ 150 (622)
++++|++|++++|.+.+... ..+..+ ++|++|++++|.+++ ..|.. ++.+++|+ +|++++|.+.+..|
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~------~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKL--PKGFPT-EKLKVLDFQNNAIHY-LSKED------MSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCC--CTTCCC-TTCCEEECCSSCCCE-ECHHH------HHTTTTCCSEEEECTTCCCCEECT
T ss_pred cCCcccEEECCCCcccccCc--ccccCC-cccCEEEcccCcccc-cChhh------hhhhcccceeEEecCCCccCccCh
Confidence 99999999999999998654 355567 999999999999986 33443 46778888 89999999998777
Q ss_pred hhhcCCccCcEeEeecCCCC--------------------------CcCchhhhhccccccC-CCcCEEEccCCcccccC
Q 037539 151 KFFGNMCSLKKLRLSYNKLS--------------------------GQYSQVIQNLSFGCVV-NSLEGLYLRWNDFTGPI 203 (622)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~i~--------------------------~~~~~~~~~l~l~~~~-~~L~~L~L~~n~~~~~~ 203 (622)
..+.. .+|+.|++++|... ...+.. +..+. .+|++|++++|.+++..
T Consensus 197 ~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~-----~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 197 GAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV-----FEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp TTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG-----GGGGGGSEEEEEECTTCCCSSCC
T ss_pred hHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH-----hchhhcCceeEEEeecCccCccC
Confidence 76654 68999999887511 011111 11111 13999999999999888
Q ss_pred CC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccC
Q 037539 204 PH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 204 ~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 282 (622)
+. |+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++. .|..+ ..+++|++|++++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~--------------~~~~~-~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL--------------CQISA-SNFPSLTHLSIKG 334 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG--------------GGGCG-GGCTTCSEEECCS
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC--------------chhhh-hccCcCCEEECCC
Confidence 77 999999999999999999 6788899999999999999998743 23333 3457999999999
Q ss_pred CcCcccCCCC------cccEEeCCCCcCcccc--CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC
Q 037539 283 NHFRGKLPDL------SLRFDDLSSNLLSGGL--PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 283 n~l~~~~~~~------~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
|.+.+..|.- +|++|++++|.+.+.. +..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 9988666541 8999999999998765 7789999999999999999998989999999999999999999986
Q ss_pred CCCc-cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccC---ChhhhHhHhhhcCCccEEECCCCcC
Q 037539 355 KLPS-PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI---PYQFENEYKSTLGLVRCLDLSSNKL 430 (622)
Q Consensus 355 ~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~l~~L~~L~L~~n~l 430 (622)
..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+.. +..+. .+++|+.|++++|++
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~-----~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQ-----TLGRLEILVLSFCDL 488 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGG-----GCTTCCEEECTTSCC
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhc-----cCCCccEEECCCCcc
Confidence 6554 589999999999999999666666555 7999999999999998632 23343 799999999999999
Q ss_pred CccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 431 DGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 431 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++..|..|..+++|++|++++|++++..|+.+.++++| .|++++|++++..|..+..+++|++|++++|++.|.++..
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 98889999999999999999999999999999999999 9999999999999999999999999999999999987743
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=451.77 Aligned_cols=456 Identities=20% Similarity=0.179 Sum_probs=291.2
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++. ++|++|++++|.+++. +. .|.++++|++|+|++|.+++..| ..+.++ ++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l-~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNPIQSFSP--GSFSGL-TS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCCCCT--TSSTTC-TT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCcccccCh--hhcCCc-cc
Confidence 6788888888876433 7888888888888877 65 67888888888888888887777 677777 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|.+++ ++ ...++.+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+..+..+.
T Consensus 106 L~~L~L~~n~l~~--~~-----~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 177 (606)
T 3vq2_A 106 LENLVAVETKLAS--LE-----SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR- 177 (606)
T ss_dssp CCEEECTTSCCCC--SS-----SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH-
T ss_pred CCEEEccCCcccc--cc-----ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh-
Confidence 8888888888875 11 1235778888888888888875 4578888888888888888888877777655433
Q ss_pred cccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCc-cCccc--------------------------------
Q 037539 183 GCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNG-TIDKS-------------------------------- 229 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------- 229 (622)
+++..+++|++++|.+++..+......+|++|++++|.+++ ..+..
T Consensus 178 -~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 178 -ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp -HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred -ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 12112347888888777666653333377777777776541 12222
Q ss_pred ------------------------cCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 230 ------------------------LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 230 ------------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
+..+++|++|++++|.++. +| ++ ..+++|+.|++++|.+
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------l~-~l-~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---------------LE-DV-PKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC---------------CC-CC-CTTCCCSEEEEESCCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchh---------------hh-hc-cccccCCEEEcccccC
Confidence 3344555555555555442 22 11 1123555555555555
Q ss_pred cccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc--CCCccCCCCCccEEeeeCCcCCCCCCccc
Q 037539 286 RGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK--IPDSMGFLNNIWTLNLHNNRLTGKLPSPL 360 (622)
Q Consensus 286 ~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l 360 (622)
+.+|.+ .++.|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+. ..|..+
T Consensus 320 -~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 395 (606)
T 3vq2_A 320 -KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395 (606)
T ss_dssp -SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC
T ss_pred -cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc
Confidence 344432 4555555555333222 344566666666666666544 2555566666666666666665 344566
Q ss_pred cCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc-cchHHhh
Q 037539 361 RNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG-AIPEEIM 439 (622)
Q Consensus 361 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 439 (622)
..+++|++|++++|.+.+..|...+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+ .+|..+.
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-----GLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-----CCCCCCEEECCCCcCCCcchHHhhc
Confidence 66677777777777665444423333566777777777776666655554 56677777777777665 3566666
Q ss_pred cccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCC-ccCc
Q 037539 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQ-SFNA 517 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~l~~ 517 (622)
.+++|++|++++|.+++..|..+.++++|++|+|++|++++..|..+..+++|++|++++|+++ .+|.. ..+. .++.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 6777777777777776666666677777777777777777666666777777777777777766 44443 2222 3556
Q ss_pred ccccCCcCCCCCC
Q 037539 518 SVYAGNLELCGLP 530 (622)
Q Consensus 518 ~~~~~n~~lc~~~ 530 (622)
+.+.+||+.|+|+
T Consensus 550 l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 FNLTNNSVACICE 562 (606)
T ss_dssp EECCSCCCCCSST
T ss_pred EEccCCCcccCCc
Confidence 6667777777664
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=425.08 Aligned_cols=466 Identities=22% Similarity=0.222 Sum_probs=296.3
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l-~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSD--KTFAFC-TN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT---HHHHCTTCCEEECCSSCCCCCCT--TTTTTC-TT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH---HHhcccCcCEEECCCCccCccCh--hhhccC-CC
Confidence 6899999999998766 8999999999999998 77 89999999999999999998766 578888 99
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~ 183 (622)
|++|++++|++++ -.|. .|+.+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. .
T Consensus 99 L~~L~L~~n~l~~-~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~ 168 (680)
T 1ziw_A 99 LTELHLMSNSIQK-IKNN------PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI---F 168 (680)
T ss_dssp CSEEECCSSCCCC-CCSC------TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG---G
T ss_pred CCEEECCCCccCc-cChh------HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc---c
Confidence 9999999999975 2222 3588999999999999999888999999999999999999999888776542 2
Q ss_pred ccCCCcCEEEccCCcccccCCC-CCCC---------------------------CCCCEEEeecccCCccCccccCCCCC
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPH-LGGF---------------------------SSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~-l~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+++ |++|++++|.+.+..+. +..+ ++|+.|++++|.+++..+..|..++.
T Consensus 169 ~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 169 ANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp TTCE-ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccc-ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 2344 99999999988876654 4332 34455555555555555555554433
Q ss_pred --CCEEEccCCCCcccccccc----------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcc-----cCCC-------
Q 037539 236 --LESLSLDGNSLRAISLCIL----------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG-----KLPD------- 291 (622)
Q Consensus 236 --L~~L~l~~n~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~------- 291 (622)
|++|++++|.+++.....+ ++.+.+.+..|..+.. +++|+.|++++|...+ .+|.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhcccccccccccChhhcc
Confidence 6666666655554331111 2333333333333322 2344444444433221 1110
Q ss_pred --CcccEEeCCCCcCccccCccccCCCCCCEEEcc----------------------------CCcccccCCCccCCCCC
Q 037539 292 --LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLA----------------------------NNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 292 --~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~----------------------------~n~i~~~~~~~~~~l~~ 341 (622)
.+++.|++++|.+.+..+..|.++++|++|+++ +|++++..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 144555555555554444444444444444444 44444444444555555
Q ss_pred ccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCc--ccCChhhhHhHhhhcC
Q 037539 342 IWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFH--GNIPYQFENEYKSTLG 418 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~l~ 418 (622)
|++|++++|.+.+.++ ..+.++++|++|++++|.+.+..+. .+..+++|+.|++++|.+. +..|..+. .++
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-----~l~ 480 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQ-----PLR 480 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTT-----TCT
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccccchhccccccccccCCcccc-----cCC
Confidence 5555555555543222 3445555555555555554222222 2224555555555555544 23343333 567
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc--------cccCCCCCCCEEeCCCCccCccCCccccCCC
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT--------PKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
+|+.|++++|++++..+..|.++++|++|++++|.+++..+ ..+.++++|++|+|++|+++...+..|.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 77777777777776666667777777777777777764321 2366777777777777777754445677777
Q ss_pred CCCEEECcCCcCcccCCCC--CcCCccCcccccCC
Q 037539 491 GLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGN 523 (622)
Q Consensus 491 ~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n 523 (622)
+|++|++++|++++ +|.. ..+..++.+.+.+|
T Consensus 561 ~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 561 ELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTS
T ss_pred CcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCC
Confidence 77777777777774 3432 23455555555555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=422.20 Aligned_cols=489 Identities=20% Similarity=0.146 Sum_probs=392.7
Q ss_pred cccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCC
Q 037539 4 KHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKL 74 (622)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l 74 (622)
+++++|+++++.+ ++++ ...+.++++|++|++++|.+++. ++|++|++++|.+++. |. .|.++
T Consensus 32 ~~l~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPL-KILK----SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG---SFSGL 103 (606)
T ss_dssp TTCCEEECTTSCC-CEEC----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT---SSTTC
T ss_pred CCcCEEECCCCCc-CEeC----hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh---hcCCc
Confidence 4566788888776 3332 22345899999999999987443 8999999999999998 77 89999
Q ss_pred CCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhc
Q 037539 75 HSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFG 154 (622)
Q Consensus 75 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 154 (622)
++|++|++++|.+++..+ ..+.++ ++|++|++++|.++++.+|..+ +++++|++|++++|.+++..+..|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~~~lp~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 104 TSLENLVAVETKLASLES--FPIGQL-ITLKKLNVAHNFIHSCKLPAYF------SNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTCCEEECTTSCCCCSSS--SCCTTC-TTCCEEECCSSCCCCCCCCGGG------GTCTTCCEEECCSSCCCEECTTTTH
T ss_pred ccCCEEEccCCccccccc--cccCCC-CCCCEEeCCCCcccceechHhH------hhcCCCCEEEccCCcceecChhhhh
Confidence 999999999999998877 678888 9999999999999875677765 7889999999999999988888887
Q ss_pred CCccCc----EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCccc------------------------------
Q 037539 155 NMCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFT------------------------------ 200 (622)
Q Consensus 155 ~l~~L~----~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~------------------------------ 200 (622)
.+++|+ +|++++|.+++..+..+... + |++|++++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~------~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI------K-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTC------E-EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred hhhccccccceeeccCCCcceeCcccccCc------e-eeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 777665 79999999887666553222 3 888888777543
Q ss_pred ----------------------------ccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 201 ----------------------------GPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 201 ----------------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
+..+.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~----- 320 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK----- 320 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-----
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-----
Confidence 223336678999999999999974 45 8899999999999999985
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCccc--cCccccCCCCCCEEEccCCc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGG--LPDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~ 327 (622)
.+|.. .+++|+.|++++|+..+..+.. +|+.|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 321 ----------~lp~~---~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 321 ----------QFPTL---DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp ----------SCCCC---CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred ----------ccccC---CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 55633 4579999999999666554432 899999999999875 48889999999999999999
Q ss_pred ccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCccc-C
Q 037539 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-I 405 (622)
Q Consensus 328 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~ 405 (622)
+++ .|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+. +
T Consensus 388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEE
T ss_pred ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcch
Confidence 985 55889999999999999999997777 6899999999999999999777776665 799999999999999873 5
Q ss_pred ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc
Q 037539 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS 485 (622)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 485 (622)
|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|+++ .+|..
T Consensus 466 ~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 466 SNVFA-----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp CSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred HHhhc-----cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 66665 7999999999999999888999999999999999999999988999999999999999999999 66777
Q ss_pred ccCCC-CCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 486 LSQLS-GLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 486 l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
+..++ +|++|++++|++.|.++.......+. .+...........|..|....|....+.
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~ 599 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWVK-----EQKQFLVNVEQMTCATPVEMNTSLVLDF 599 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT-----TSSSSBSSGGGCCCC-------------
T ss_pred HhhhcccCcEEEccCCCcccCCccHHHHHHHH-----cCcccccCCccceeCCChHhCCCEeeec
Confidence 98987 59999999999999887642222221 2222222344467888887776665444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=438.81 Aligned_cols=465 Identities=20% Similarity=0.174 Sum_probs=374.4
Q ss_pred CccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhc
Q 037539 2 QYKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVA 72 (622)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~ 72 (622)
.+++++.|+++++..++.++ ...+.++++|++|+|++|.+.+. ++|++|+|++|.+++. +. ...+.
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~ 120 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTID----KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFR 120 (844)
T ss_dssp SCCSCSEEEECTTCCCCEEC----TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST-TCCCS
T ss_pred ccccCeEEeCCCCCCccccC----HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc-Ccccc
Confidence 46788899999987655542 23345899999999999988543 9999999999999985 43 01389
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCC--ccccEEEeecccCCCCCc
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHM--VSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~ 150 (622)
++++|++|+|++|.+++..+. ..+.++ ++|++|++++|.+++ ..+..+ ..+ ++|++|++++|.+.+..|
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~-~~~~~L-~~L~~L~Ls~N~i~~-~~~~~l------~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLH-PSFGKL-NSLKSIDFSSNQIFL-VCEHEL------EPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCC-GGGGTC-SSCCEEEEESSCCCC-CCSGGG------HHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccCCCCEEECCCCcccccccc-hhHhhC-CCCCEEECCCCcCCe-eCHHHc------ccccCCccceEECCCCccccccc
Confidence 999999999999999887552 467888 999999999999987 555544 334 799999999999998888
Q ss_pred hhhcCCcc------CcEeEeecCCCCCcCchhhhhcc-------------------------------cccc-CCCcCEE
Q 037539 151 KFFGNMCS------LKKLRLSYNKLSGQYSQVIQNLS-------------------------------FGCV-VNSLEGL 192 (622)
Q Consensus 151 ~~l~~l~~------L~~L~L~~n~i~~~~~~~~~~l~-------------------------------l~~~-~~~L~~L 192 (622)
..++.+.+ |+.|++++|.+++..+..+.... +..+ ..+|++|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 77776665 99999999988776665543320 1111 1249999
Q ss_pred EccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhc
Q 037539 193 YLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDL 271 (622)
Q Consensus 193 ~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (622)
++++|.+.+..+. +..+++|+.|++++|.+++..+..|..+++|++|++++|.+++. .|..+ ..
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~-~~ 336 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--------------YSSNF-YG 336 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC--------------CSCSC-SS
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc--------------CHHHh-cC
Confidence 9999999988777 99999999999999999999899999999999999999998743 23333 34
Q ss_pred CCCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEe
Q 037539 272 SNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLN 346 (622)
Q Consensus 272 ~~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 346 (622)
+++|+.|++++|++.+..+.. +|+.|++++|.+.+. ..+++|+.|++++|+++ .+|.. ..+++.|+
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIH 407 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceee
Confidence 569999999999998666542 899999999998753 23789999999999998 44443 56899999
Q ss_pred eeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 347 LHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 347 Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
+++|.+.+... ..+..+++|++|++++|.+.+..+......+++|+.|++++|.+....+.......+..+++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 99999985432 24568999999999999995544443344579999999999999744432222222337899999999
Q ss_pred CCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 426 SSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 426 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
++|++++..|..|..+++|++|+|++|++++..+..+. ++|+.|+|++|++++..|+.+ ++|+.|++++|++.|.
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 99999988898999999999999999999987777666 899999999999999988765 4799999999999998
Q ss_pred CCCC
Q 037539 506 IPSG 509 (622)
Q Consensus 506 ~p~~ 509 (622)
++..
T Consensus 563 c~~~ 566 (844)
T 3j0a_A 563 CELS 566 (844)
T ss_dssp SSCC
T ss_pred cccH
Confidence 8754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=417.06 Aligned_cols=431 Identities=22% Similarity=0.259 Sum_probs=282.0
Q ss_pred cCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
+++++|++++|.+++ +++|++|++++|.+++. +. .|.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLAL--GAFSGL-SS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECT--TTTTTC-TT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcc---cccCchhCCEEeCcCCcCCccCH--hhhcCc-cc
Confidence 468888888887643 37888888888888877 55 68888888888888888887766 677777 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|+++. ++. ..++.+++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+..+.
T Consensus 102 L~~L~L~~n~l~~--l~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 173 (570)
T 2z63_A 102 LQKLVAVETNLAS--LEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH- 173 (570)
T ss_dssp CCEEECTTSCCCC--STT-----CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-
T ss_pred ccccccccccccc--CCC-----ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-
Confidence 8888888888875 221 135788888888888888876 3688888888888888888888877777755543
Q ss_pred cccCCCc----CEEEccCCcccccCCC-CCCCCCCCEEEeeccc------------------------------------
Q 037539 183 GCVVNSL----EGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC------------------------------------ 221 (622)
Q Consensus 183 ~~~~~~L----~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~------------------------------------ 221 (622)
+| ++|++++|.+.+..+. +... +|++|++++|.
T Consensus 174 -----~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 174 -----QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp -----TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred -----ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 36 7888888888877766 5444 78888877763
Q ss_pred ----------------------CCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEE
Q 037539 222 ----------------------LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279 (622)
Q Consensus 222 ----------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~ 279 (622)
+.+..+..+..+++|++|++++|.++ .+|.++... +|++|+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---------------~l~~~~~~~--~L~~L~ 310 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---------------RVKDFSYNF--GWQHLE 310 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC---------------SCCBCCSCC--CCSEEE
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch---------------hhhhhhccC--CccEEe
Confidence 22233344455566666666666554 334433332 566666
Q ss_pred ccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccC--CCccCCCCCccEEeeeCCcCCC
Q 037539 280 LSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI--PDSMGFLNNIWTLNLHNNRLTG 354 (622)
Q Consensus 280 l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~ 354 (622)
+++|.+. .+|.. .++.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+
T Consensus 311 l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 311 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp EESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred eccCccc-ccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 6666655 33321 566666666665544333 45666666666666665432 4445566666666666666653
Q ss_pred CCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-cc
Q 037539 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GA 433 (622)
Q Consensus 355 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 433 (622)
..+ .+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+. +.
T Consensus 388 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 388 MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGE
T ss_pred ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-----cCCcCcEEECcCCcCcccc
Confidence 332 3666666666666666664444433333566666666666666655555444 5666666666666665 34
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++|.+|..
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 5566666666666666666666555666666666666666666666665556666666666666666666666653
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=398.99 Aligned_cols=464 Identities=21% Similarity=0.194 Sum_probs=380.6
Q ss_pred CcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEE
Q 037539 35 LQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLD 108 (622)
Q Consensus 35 L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~ 108 (622)
.+.++.++..++.. +++++|++++|.+++. +. .|.++++|++|++++|.+++..+ ..+.++ ++|++|+
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l-~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCCEECT--TTTTTC-TTCCEEE
T ss_pred CcEEEeCCCCccccCCCccccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCCccCc--ccccCc-hhCCEEe
Confidence 45667776666554 6899999999999988 65 79999999999999999998777 678888 9999999
Q ss_pred ccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc-CchhhhhccccccCC
Q 037539 109 LSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-YSQVIQNLSFGCVVN 187 (622)
Q Consensus 109 Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~l~~~~~ 187 (622)
+++|+++. ..| ..|+.+++|++|++++|.+++..+..++.+++|++|++++|.+++. .|..+.+ +++
T Consensus 83 L~~n~l~~-~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-----l~~ 150 (570)
T 2z63_A 83 LTGNPIQS-LAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----LTN 150 (570)
T ss_dssp CTTCCCCE-ECT------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-----CTT
T ss_pred CcCCcCCc-cCH------hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcc-----cCC
Confidence 99999985 222 3458999999999999999976666799999999999999999874 5888544 445
Q ss_pred CcCEEEccCCcccccCCC-CCCCCCC----CEEEeecccCCccCccccCCCCCCCEEEccCCCCccccc-----------
Q 037539 188 SLEGLYLRWNDFTGPIPH-LGGFSSL----EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISL----------- 251 (622)
Q Consensus 188 ~L~~L~L~~n~~~~~~~~-l~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----------- 251 (622)
|++|++++|.+++..+. ++.+++| +.|++++|.+++..+..+... +|++|++++|.......
T Consensus 151 -L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 228 (570)
T 2z63_A 151 -LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228 (570)
T ss_dssp -CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCE
T ss_pred -CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccc
Confidence 99999999999987766 8888888 899999999998888887765 89999999884321100
Q ss_pred --------------------ccc------------cCCC-CcccCCchhHHhcCCCCcEEEccCCcCcccCCC---Cccc
Q 037539 252 --------------------CIL------------TSPI-GISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD---LSLR 295 (622)
Q Consensus 252 --------------------~~~------------~~~~-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~L~ 295 (622)
..+ +..+ .+.+.+|..+.. +++|+.|++++|.+.+..+. ..++
T Consensus 229 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l~~~~~~~~L~ 307 (570)
T 2z63_A 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFSYNFGWQ 307 (570)
T ss_dssp EEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEECSCCBCCSCCCCS
T ss_pred eeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccchhhhhhhccCCcc
Confidence 000 0011 334445555544 46999999999998743222 2899
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCC--CccccCCCCccEEEccC
Q 037539 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKL--PSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~ 373 (622)
.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 308 ~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 308 HLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp EEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred EEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 9999999988 4444 4788999999999998866554 67899999999999998543 67788999999999999
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCC-hhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
|.+ ..++..+. .+++|++|++++|.+.+..+ ..+. .+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 383 n~l-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 383 NGV-ITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CSE-EEEEEEEE-TCTTCCEEECTTSEEESCTTSCTTT-----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred Ccc-cccccccc-ccCCCCEEEccCCccccccchhhhh-----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 998 44555544 79999999999999987665 3343 7999999999999999889999999999999999999
Q ss_pred ccc-CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 453 HLT-GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 453 ~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+..++.+.+.+|++.|+|+
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 997 568899999999999999999999988999999999999999999999776653 457788889999999999876
Q ss_pred C
Q 037539 531 L 531 (622)
Q Consensus 531 ~ 531 (622)
.
T Consensus 536 ~ 536 (570)
T 2z63_A 536 R 536 (570)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=414.78 Aligned_cols=364 Identities=19% Similarity=0.234 Sum_probs=262.8
Q ss_pred CCCCCCCCCCcchhccccCcccEEEccCCCCCCCC-----------------CchhhhcccccC--CCccccEEEeeccc
Q 037539 84 SCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSS-----------------VYPWLLNLKAFQ--HMVSLKSLYLSDSE 144 (622)
Q Consensus 84 ~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~-----------------~~~~~~~~~~l~--~l~~L~~L~L~~n~ 144 (622)
+|.+++ +| ..+.++ ++|++|+|++|.+++ . +|..+ + ++++|++|++++|.
T Consensus 192 ~n~l~~-ip--~~l~~l-~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l------~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 192 SNNITF-VS--KAVMRL-TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDL------KWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp SCEEEE-EC--GGGGGC-TTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCC------CGGGCTTCCEEEEECCT
T ss_pred cCCCcc-CC--HHHhcc-cCCCEEECcCCcccc-ccccccccccccchhcccCchhh------hhcccCCCCEEEecCCc
Confidence 455666 56 567777 778888888887765 2 45443 4 67778888888887
Q ss_pred CCCCCchhhcCCccCcEeEeecCC-CCC-cCchhhhhc-cccccCCCcCEEEccCCcccccCC--CCCCCCCCCEEEeec
Q 037539 145 LEGGIPKFFGNMCSLKKLRLSYNK-LSG-QYSQVIQNL-SFGCVVNSLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDV 219 (622)
Q Consensus 145 l~~~~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-~l~~~~~~L~~L~L~~n~~~~~~~--~l~~l~~L~~L~L~~ 219 (622)
+.+.+|..|+++++|++|++++|+ +++ ..|..+..+ .+..+++ |++|++++|.++.... .++.+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 777777777778888888888877 776 667665543 0111233 7777777777773333 277777777777777
Q ss_pred ccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCC-CcEEEccCCcCcccCCCCcccEEe
Q 037539 220 NCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK-LSYLNLSNNHFRGKLPDLSLRFDD 298 (622)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~L~~L~ 298 (622)
|.+++.+| .+..+++|++|++++|+++ .+|.++.... + |++|++++|.+.
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~-~~L~~L~Ls~N~l~------------ 390 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT---------------EIPANFCGFT-EQVENLSFAHNKLK------------ 390 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE---------------ECCTTSEEEC-TTCCEEECCSSCCS------------
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc---------------cccHhhhhhc-ccCcEEEccCCcCc------------
Confidence 77776666 7777777777777777765 4455544443 4 666666666655
Q ss_pred CCCCcCccccCccccCCC--CCCEEEccCCcccccCCCccC-------CCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 299 LSSNLLSGGLPDCWLHFD--RLFILNLANNRLSGKIPDSMG-------FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 299 ls~n~l~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
.+|..+..++ +|++|++++|++++..|..+. .+++|++|++++|.++...+..+..+++|++|
T Consensus 391 --------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 391 --------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp --------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred --------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 4455555443 788888888888887777777 67788888888888885444556678888888
Q ss_pred EccCCcccccCchhHHhhcc-------cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 370 DLEKNAIFGEIPTWIGESLQ-------NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
++++|.+ ..+|...+.... +|++|++++|+++ .+|..+. ...+++|+.|+|++|++++ +|..+.+++
T Consensus 463 ~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 463 NLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR---ATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp ECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS---TTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred ECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh---hccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence 8888888 477776653332 8888888888888 4554331 0157888888888888886 788888888
Q ss_pred ccceeec------CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 443 GLIALNL------SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 443 ~L~~L~L------~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.+.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 8898888 45777888888899999999999999999 46777655 7899999999988754
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=403.94 Aligned_cols=441 Identities=16% Similarity=0.207 Sum_probs=360.1
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCC------CC------CCCCcchhccccCcccEEEccCCCCC
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCAL------PP------VNPSFIWHFNLSTSIETLDLSDNNLP 115 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~~~~~~l~~l~~~L~~L~Ls~n~l~ 115 (622)
.+++.|+|+++.+++. |. .++++++|++|+|++|.+ .+ ..| ... + ..|+ ++++++.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~--~~~--~-~~l~-l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERLFGPKGISANMS--DEQ--K-QKMR-MHYQKTFVD 151 (636)
T ss_dssp CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC--HHH--H-HHHH-THHHHHHTC
T ss_pred CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCCccccCCccccccccccCch--HHH--H-HHHH-hhHHHhhhc
Confidence 5799999999999888 76 899999999999999965 12 222 122 3 5677 788877776
Q ss_pred CCCCchhhhccc-----------c--cCCCccccEEEee--cccCCCCCchhhcCCccCcEeEeecCCCCCc--------
Q 037539 116 SSSVYPWLLNLK-----------A--FQHMVSLKSLYLS--DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-------- 172 (622)
Q Consensus 116 ~~~~~~~~~~~~-----------~--l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-------- 172 (622)
+ ..|..+...- . ......++.+.+. .|.+++ +|..|+++++|++|++++|.+++.
T Consensus 152 ~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 152 Y-DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp C-CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred c-CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 5 5554432100 0 0111222222222 578887 899999999999999999999985
Q ss_pred ---------CchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeeccc-CCc-cCccccCCC------C
Q 037539 173 ---------YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC-LNG-TIDKSLSQL------S 234 (622)
Q Consensus 173 ---------~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~ 234 (622)
+|..+. +.++++ |++|++++|.+.+.+|. ++++++|++|++++|. +++ .+|..+..+ +
T Consensus 230 ~~~~~~~~~ip~~l~---~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 230 ENSEYAQQYKTEDLK---WDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp TTSHHHHHHTTSCCC---GGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccchhcccCchhhh---hcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 777743 115555 99999999999998888 9999999999999998 988 788888776 9
Q ss_pred CCCEEEccCCCCcccccccccCCCCcccCCch--hHHhcCCCCcEEEccCCcCcccCCCC----cccEEeCCCCcCcccc
Q 037539 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPD--WFWDLSNKLSYLNLSNNHFRGKLPDL----SLRFDDLSSNLLSGGL 308 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~----~L~~L~ls~n~l~~~~ 308 (622)
+|++|++++|+++ .+|. .+.. +++|+.|++++|++.|.+|.+ +|+.|++++|.+. .+
T Consensus 306 ~L~~L~L~~n~l~---------------~ip~~~~l~~-l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 306 KIQIIYIGYNNLK---------------TFPVETSLQK-MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp TCCEEECCSSCCS---------------SCCCHHHHTT-CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-EC
T ss_pred CCCEEECCCCcCC---------------ccCchhhhcc-CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cc
Confidence 9999999999987 5677 5544 569999999999999888865 8999999999999 78
Q ss_pred CccccCCCC-CCEEEccCCcccccCCCccCCCC--CccEEeeeCCcCCCCCCcccc-------CCCCccEEEccCCcccc
Q 037539 309 PDCWLHFDR-LFILNLANNRLSGKIPDSMGFLN--NIWTLNLHNNRLTGKLPSPLR-------NFSQLRVLDLEKNAIFG 378 (622)
Q Consensus 309 ~~~~~~~~~-L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~l~-------~l~~L~~L~L~~n~i~~ 378 (622)
|..+..+++ |++|++++|+++ .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|++++|.+ .
T Consensus 369 p~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~ 446 (636)
T 4eco_A 369 PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S 446 (636)
T ss_dssp CTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C
T ss_pred cHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-C
Confidence 888999999 999999999999 7788777655 899999999999998888888 888999999999999 5
Q ss_pred cCchhHHhhcccccEeecCCCcCcccCChhhhHh--HhhhcCCccEEECCCCcCCccchHHhh--cccccceeecCCccc
Q 037539 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE--YKSTLGLVRCLDLSSNKLDGAIPEEIM--DLVGLIALNLSRNHL 454 (622)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l 454 (622)
.+|..++..+++|++|++++|+++...+..+... ....+++|+.|+|++|+++ .+|..+. .+++|++|+|++|++
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC
T ss_pred cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC
Confidence 8998888779999999999999994333333210 0112339999999999999 7888886 999999999999999
Q ss_pred cCCCccccCCCCCCCEEeC------CCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCC
Q 037539 455 TGPITPKIGELTSLDFLDL------SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|.. ....++.+.+.+|+..|
T Consensus 526 ~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 97 8999999999999999 56888889999999999999999999999 688876 44788889999998876
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=393.73 Aligned_cols=449 Identities=21% Similarity=0.233 Sum_probs=263.8
Q ss_pred cCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 33 ERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
++|++|++++|.+++. ++|++|++++|.+++. +. .|.++++|++|++++|.+++..+ ..+..+ ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSS--SWFGPL-SS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCCSCCH--HHHTTC-TT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh---hccccccCCEEECCCCccCccCH--HHhccC-CC
Confidence 6788999998887433 8889999999988887 56 78888899999999998888766 567788 88
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc-CCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE-LEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|.++++..|.. ++.+++|++|++++|. +....+..|.++++|++|++++|.+++..|..+..
T Consensus 100 L~~L~Ls~n~l~~~~~~~~------~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--- 170 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSL------FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS--- 170 (549)
T ss_dssp CCEEECTTCCCSSSCSSCS------CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT---
T ss_pred CcEEECCCCcccccchhhh------hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc---
Confidence 9999999998875334433 4788889999999888 44333467888889999999999888888877444
Q ss_pred cccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccC--c-cccCCCCCCCEEEccCCCCcccccccccCCC
Q 037539 183 GCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTI--D-KSLSQLSKLESLSLDGNSLRAISLCILTSPI 258 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 258 (622)
+++ |++|++++|.+...... +..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..
T Consensus 171 --l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------- 239 (549)
T 2z81_A 171 --IRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES-------- 239 (549)
T ss_dssp --CSE-EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH--------
T ss_pred --ccc-CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH--------
Confidence 444 89999988887543333 456888999999998887642 1 22345778899999888776432
Q ss_pred CcccCCchhHH---hcCCCCcEEEccCCcCcccC----------CCC-cccEEeCCCCcCccc-----cCccccCCCCCC
Q 037539 259 GISDSIPDWFW---DLSNKLSYLNLSNNHFRGKL----------PDL-SLRFDDLSSNLLSGG-----LPDCWLHFDRLF 319 (622)
Q Consensus 259 ~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----------~~~-~L~~L~ls~n~l~~~-----~~~~~~~~~~L~ 319 (622)
+..+. ...++|+.+++++|.+.+.. ... .++.+++.++.+... .+..+...++|+
T Consensus 240 ------~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 240 ------FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp ------HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ------HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 22221 22356777777777665421 111 444555444443321 111122234455
Q ss_pred EEEccCCcccccCCCcc-CCCCCccEEeeeCCcCCCCCC---ccccCCCCccEEEccCCcccccCch--hHHhhcccccE
Q 037539 320 ILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRLTGKLP---SPLRNFSQLRVLDLEKNAIFGEIPT--WIGESLQNLIV 393 (622)
Q Consensus 320 ~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~i~~~~~~--~~~~~l~~L~~ 393 (622)
+|++++|+++ .+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++|.+ ..++. ..+..+++|++
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCE
Confidence 5555555554 333322 345555555555555543321 1244455555555555555 22221 12224555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|++|+|
T Consensus 392 L~Ls~N~l~-~lp~~~~-----~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQ-----WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp EECTTCCCC-CCCSCCC-----CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred EECCCCCCc-cCChhhc-----ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 555555554 2332222 3455555555555554 222211 134555555555554321 34455555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++|+++ .+|. ...+++|++|++++|++++..|.. ..+..++.+.+.+|++.|+|+
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 555554 3333 234555555555555555443331 234444445555555555443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=388.79 Aligned_cols=445 Identities=18% Similarity=0.201 Sum_probs=345.3
Q ss_pred CCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCC
Q 037539 7 PHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSL 77 (622)
Q Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L 77 (622)
++++++++++ +++|..+. ++|++|++++|.+++. ++|++|++++|.+++. +. .|.++++|
T Consensus 3 ~~l~ls~n~l-~~ip~~~~-------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGL-IHVPKDLS-------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS---VFKFNQEL 71 (520)
T ss_dssp CEEECTTSCC-SSCCCSCC-------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG---GGTTCTTC
T ss_pred ceEecCCCCc-cccccccc-------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH---HhhcccCC
Confidence 3566777665 45553322 7889999999988665 8899999999998888 66 78899999
Q ss_pred CEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCc
Q 037539 78 KSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 157 (622)
++|+|++|.++.... . .+ ++|++|++++|+++++.+|..+ +.+++|++|++++|.+++ ..+..++
T Consensus 72 ~~L~Ls~N~l~~lp~---~--~l-~~L~~L~L~~N~l~~~~~p~~~------~~l~~L~~L~L~~n~l~~---~~~~~l~ 136 (520)
T 2z7x_B 72 EYLDLSHNKLVKISC---H--PT-VNLKHLDLSFNAFDALPICKEF------GNMSQLKFLGLSTTHLEK---SSVLPIA 136 (520)
T ss_dssp CEEECCSSCCCEEEC---C--CC-CCCSEEECCSSCCSSCCCCGGG------GGCTTCCEEEEEESSCCG---GGGGGGT
T ss_pred CEEecCCCceeecCc---c--cc-CCccEEeccCCccccccchhhh------ccCCcceEEEecCcccch---hhccccc
Confidence 999999998885433 2 66 8999999999998865566655 678899999999998875 4567777
Q ss_pred cC--cEeEeecCCC--CCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCCCCCCEEEeeccc-------CCc
Q 037539 158 SL--KKLRLSYNKL--SGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGFSSLEAWSLDVNC-------LNG 224 (622)
Q Consensus 158 ~L--~~L~L~~n~i--~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l~~L~~L~L~~n~-------l~~ 224 (622)
+| +.|++++|.+ .+..|..+..+. .....+++++|.+.+..+. +..+++|+.|++++|. +.+
T Consensus 137 ~L~L~~L~l~~n~l~~~~~~~~~l~~l~-----~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 137 HLNISKVLLVLGETYGEKEDPEGLQDFN-----TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp TSCEEEEEEEECTTTTSSCCTTTTTTCC-----EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred cceeeEEEeecccccccccccccccccc-----cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 77 9999999988 777777754432 1255678888888776665 7889999999999987 665
Q ss_pred cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC----------cc
Q 037539 225 TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL----------SL 294 (622)
Q Consensus 225 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----------~L 294 (622)
.++ .+..+++|++|++++|.+++.... .++...+ .++|++|++++|++.+.+|.. .+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~----------~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFI----------RILQLVW--HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHH----------HHHHHHH--TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred chh-hhccccchhhccccccccCHHHHH----------HHHHHhh--hCcccEEEeecccccCccccchhhcccccCcee
Confidence 555 788899999999999887642100 1112221 358999999999988766641 68
Q ss_pred cEEeCCCCcCccccC-ccccCC---CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEE
Q 037539 295 RFDDLSSNLLSGGLP-DCWLHF---DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370 (622)
Q Consensus 295 ~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 370 (622)
+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 279 ~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 279 SIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred Eeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 8888888888 344 344333 67999999999887432 126789999999999999988888999999999999
Q ss_pred ccCCcccc--cCchhHHhhcccccEeecCCCcCcccCChh-hhHhHhhhcCCccEEECCCCcCCccchHHhhccccccee
Q 037539 371 LEKNAIFG--EIPTWIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL 447 (622)
Q Consensus 371 L~~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 447 (622)
+++|.+.+ .+|..+. .+++|++|++++|++.+.+|.. +. .+++|++|++++|++++..|..+. ++|++|
T Consensus 355 L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCS-----WTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426 (520)
T ss_dssp CCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCC-----CCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred ccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhc-----cCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence 99999844 3444444 7899999999999998755543 33 688999999999999877776554 789999
Q ss_pred ecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 448 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.++.
T Consensus 427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 99999998 6777777999999999999999954433488999999999999999988664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=400.41 Aligned_cols=363 Identities=18% Similarity=0.206 Sum_probs=247.1
Q ss_pred CCCCCCCCCcchhccccCcccEEEccCCCCCCC----------------CCchhhhcccccCCCccccEEEeecccCCCC
Q 037539 85 CALPPVNPSFIWHFNLSTSIETLDLSDNNLPSS----------------SVYPWLLNLKAFQHMVSLKSLYLSDSELEGG 148 (622)
Q Consensus 85 n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~----------------~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 148 (622)
|.+++ +| ..+.++ ++|++|+|++|++++. .+|..+ .|.++++|++|+|++|.+.+.
T Consensus 435 N~L~~-IP--~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~ 506 (876)
T 4ecn_A 435 NRITF-IS--KAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ 506 (876)
T ss_dssp CEEEE-EC--GGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS
T ss_pred Ccccc-hh--HHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc
Confidence 55655 56 567777 7888888888877641 044433 122777888888888887777
Q ss_pred CchhhcCCccCcEeEeecCC-CCC-cCchhhhhcc--ccccCCCcCEEEccCCcccccCC--CCCCCCCCCEEEeecccC
Q 037539 149 IPKFFGNMCSLKKLRLSYNK-LSG-QYSQVIQNLS--FGCVVNSLEGLYLRWNDFTGPIP--HLGGFSSLEAWSLDVNCL 222 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~--l~~~~~~L~~L~L~~n~~~~~~~--~l~~l~~L~~L~L~~n~l 222 (622)
+|..|+++++|+.|++++|+ +++ ..|..+..+. +..+++ |++|++++|.+..... .++.+++|++|++++|.+
T Consensus 507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc
Confidence 88888888888888888887 776 6676654431 233445 8888888888773333 277788888888888888
Q ss_pred CccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC-------ccc
Q 037539 223 NGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL-------SLR 295 (622)
Q Consensus 223 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~L~ 295 (622)
+ .+| .|..+++|++|++++|.++ .+|..+.....+|+.|++++|++. .+|.. .|+
T Consensus 586 ~-~lp-~~~~L~~L~~L~Ls~N~l~---------------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 586 R-HLE-AFGTNVKLTDLKLDYNQIE---------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp C-BCC-CCCTTSEESEEECCSSCCS---------------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred c-cch-hhcCCCcceEEECcCCccc---------------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 7 566 7778888888888888776 456555554322888888888877 44432 378
Q ss_pred EEeCCCCcCccccCccc---c--CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcc-ccC-------
Q 037539 296 FDDLSSNLLSGGLPDCW---L--HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSP-LRN------- 362 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~---~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-l~~------- 362 (622)
.|++++|.+.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|++++|.+. .+|.. +..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence 88888888876554322 2 3458999999999998433334457889999999999988 44443 332
Q ss_pred CCCccEEEccCCcccccCchhHH-hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcc
Q 037539 363 FSQLRVLDLEKNAIFGEIPTWIG-ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDL 441 (622)
Q Consensus 363 l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 441 (622)
+++|++|+|++|.+ ..+|..++ ..+++|+.|+|++|++++ +|..+. .+++|+.|+|++|+
T Consensus 727 l~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-----~L~~L~~L~Ls~N~------------ 787 (876)
T 4ecn_A 727 TYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-----NSSQLKAFGIRHQR------------ 787 (876)
T ss_dssp GGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-----GCTTCCEEECCCCB------------
T ss_pred cCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-----cCCCCCEEECCCCC------------
Confidence 23899999999998 47887765 358889999999998886 555554 68888888887754
Q ss_pred cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 442 VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 442 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 788 ------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 788 ------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 3444555555555555555555555555555 34444433 35555555555554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=382.37 Aligned_cols=447 Identities=22% Similarity=0.193 Sum_probs=360.0
Q ss_pred cEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEc
Q 037539 36 QELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDL 109 (622)
Q Consensus 36 ~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~L 109 (622)
++||+++|.++.. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..| ..+..+ ++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS---DILSLSKLRILIISHNRIQYLDI--SVFKFN-QELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSCCCEEEG--GGGTTC-TTCCEEEC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChh---hccccccccEEecCCCccCCcCh--HHhhcc-cCCCEEec
Confidence 5799999999776 6899999999999988 45 89999999999999999998877 788888 99999999
Q ss_pred cCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCC
Q 037539 110 SDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188 (622)
Q Consensus 110 s~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~ 188 (622)
++|+++. +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++. . +..+++
T Consensus 77 s~N~l~~--lp~~--------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-----~~~l~~- 137 (520)
T 2z7x_B 77 SHNKLVK--ISCH--------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-----VLPIAH- 137 (520)
T ss_dssp CSSCCCE--EECC--------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-----GGGGTT-
T ss_pred CCCceee--cCcc--------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-----cccccc-
Confidence 9999974 3331 68999999999999997 4789999999999999999999863 3 333333
Q ss_pred c--CEEEccCCcc--cccCCC-CCCCC-CCCEEEeecccCCccCc-cccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 189 L--EGLYLRWNDF--TGPIPH-LGGFS-SLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 189 L--~~L~L~~n~~--~~~~~~-l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
| ++|++++|.+ .+..|. +..+. ....+++++|.+.+.++ ..+..+++|+.|++++|..... ...+.
T Consensus 138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~~ 210 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-------CSYFL 210 (520)
T ss_dssp SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-------THHHH
T ss_pred ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-------cceee
Confidence 6 9999999999 666665 66655 34456778888765444 4677899999999999861100 00011
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCC--------CcccEEeCCCCcCccccCccc-----cCCCCCCEEEccCCcc
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPD--------LSLRFDDLSSNLLSGGLPDCW-----LHFDRLFILNLANNRL 328 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~L~~L~ls~n~l~~~~~~~~-----~~~~~L~~L~L~~n~i 328 (622)
+.+| .+ ..+++|+.|++++|.+.+..+. ..++.|++++|.+.+.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 211 SILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred cchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 2333 33 3356999999999987753221 279999999999998889888 8999999999999998
Q ss_pred cccCC-CccCCC---CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-
Q 037539 329 SGKIP-DSMGFL---NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG- 403 (622)
Q Consensus 329 ~~~~~-~~~~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~- 403 (622)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKEL 363 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCcc
Confidence 344 334333 67999999999987432 236889999999999999777787765 79999999999999986
Q ss_pred -cCChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 404 -NIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 404 -~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
..|..+. .+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .
T Consensus 364 ~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 364 SKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp HHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred ccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 3333343 799999999999999975665 488899999999999999887777664 79999999999999 7
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCC
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+|++.|+|+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 7887889999999999999999 56654 456778888999999999875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=391.96 Aligned_cols=414 Identities=17% Similarity=0.207 Sum_probs=328.0
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEc-cCCCCCCCCCCcchh-----------------------------
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVL-FSCALPPVNPSFIWH----------------------------- 97 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~l----------------------------- 97 (622)
.+++.|+|+++.+.+. |. .++++++|++|+| ++|.+.+..+ ...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~---~l~~L~~L~~LdLss~N~lsG~~~--~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRL--FGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp SCEEEEECTTTCCEEEECG---GGGGCTTCCEEESCCTTHHHHTTC--BTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEECccCCCCCcCch---HHhccccceEeeeccccccccccc--ccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 5799999999999988 77 8999999999999 7886655422 110
Q ss_pred ----------------------ccccCcccEEEccC--CCCCCCCCchhhhcccccCCCccccEEEeecccCCC------
Q 037539 98 ----------------------FNLSTSIETLDLSD--NNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG------ 147 (622)
Q Consensus 98 ----------------------~~l~~~L~~L~Ls~--n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~------ 147 (622)
... ..++.+.+.. |++++ +|.. ++++++|++|+|++|.+++
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~--IP~~------l~~L~~L~~L~Ls~N~Lsg~~i~~~ 468 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF--ISKA------IQRLTKLQIIYFANSPFTYDNIAVD 468 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE--ECGG------GGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hhhhHHHHHHhhhCccccccccccc-cchhhceeccccCcccc--hhHH------HhcCCCCCEEECcCCcCCCCccccc
Confidence 000 1122222222 44442 5554 4789999999999999997
Q ss_pred -----------CCchhhc--CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-ccc-cCCC-CC----
Q 037539 148 -----------GIPKFFG--NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-FTG-PIPH-LG---- 207 (622)
Q Consensus 148 -----------~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-~~~-~~~~-l~---- 207 (622)
.+|+.++ ++++|++|++++|.+.+..|..+.++ ++ |++|++++|+ +++ .+|. ++
T Consensus 469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-----~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~ 542 (876)
T 4ecn_A 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-----PE-LQSLNIACNRGISAAQLKADWTRLAD 542 (876)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-----SS-CCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-----CC-CCEEECcCCCCcccccchHHHHhhhh
Confidence 3888877 99999999999999999999885544 44 9999999998 887 5554 44
Q ss_pred ---CCCCCCEEEeecccCCccCcc--ccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccC
Q 037539 208 ---GFSSLEAWSLDVNCLNGTIDK--SLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSN 282 (622)
Q Consensus 208 ---~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 282 (622)
.+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+| .+ ..+++|+.|++++
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---------------~lp-~~-~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---------------HLE-AF-GTNVKLTDLKLDY 604 (876)
T ss_dssp CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---------------BCC-CC-CTTSEESEEECCS
T ss_pred cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---------------cch-hh-cCCCcceEEECcC
Confidence 4559999999999999 7887 8999999999999999987 445 22 3345777777777
Q ss_pred CcCcccCCCCcccEEeCCCCcCccccCccccCCCC-CCEEEccCCcccccCCCccCCCCC--ccEEeeeCCcCCCCCCcc
Q 037539 283 NHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDR-LFILNLANNRLSGKIPDSMGFLNN--IWTLNLHNNRLTGKLPSP 359 (622)
Q Consensus 283 n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~ 359 (622)
|++. .+|..+..+++ |+.|++++|+++ .+|..+..++. |+.|++++|.+.+.+|..
T Consensus 605 N~l~--------------------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 605 NQIE--------------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp SCCS--------------------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred Cccc--------------------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 7665 56666788888 999999999998 67777776654 999999999998765532
Q ss_pred c---c--CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH---hhhcCCccEEECCCCcCC
Q 037539 360 L---R--NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY---KSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 360 l---~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~~l~~L~~L~L~~n~l~ 431 (622)
. . .+++|++|++++|.+ ..+|..++..+++|+.|++++|++. .+|....... ...+++|+.|+|++|+++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred hhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc
Confidence 2 2 345899999999999 5889888877899999999999998 4443322110 113448999999999999
Q ss_pred ccchHHhh--cccccceeecCCccccCCCccccCCCCCCCEEeCCC------CccCccCCccccCCCCCCEEECcCCcCc
Q 037539 432 GAIPEEIM--DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR------NLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 432 ~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 7788887 99999999999999996 788899999999999976 888889999999999999999999999
Q ss_pred ccCCCCCcCCccCcccccCCcCCC
Q 037539 504 GKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 504 ~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
+.+|.. ....++.+.+++|+...
T Consensus 819 ~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CccCHh-hcCCCCEEECCCCCCCc
Confidence 788886 44788888899997654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=380.51 Aligned_cols=450 Identities=20% Similarity=0.219 Sum_probs=355.4
Q ss_pred CcCCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCccc
Q 037539 32 IERLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIE 105 (622)
Q Consensus 32 l~~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~ 105 (622)
|+...+.|.+++.++.. ++|++|++++|.+++. +. .+.++++|++|++++|.+++..+ ..+..+ ++|+
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l-~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEG--DAFYSL-GSLE 77 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECT--TTTTTC-TTCC
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccCh--hhcccc-ccCC
Confidence 44555678888888766 6899999999999988 66 79999999999999999998877 678888 9999
Q ss_pred EEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcC-chhhhhcccc
Q 037539 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQY-SQVIQNLSFG 183 (622)
Q Consensus 106 ~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~l~ 183 (622)
+|++++|++++ ..|.. |+.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.. +.. ++
T Consensus 78 ~L~Ls~n~l~~-~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~ 145 (549)
T 2z81_A 78 HLDLSDNHLSS-LSSSW------FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-----FA 145 (549)
T ss_dssp EEECTTSCCCS-CCHHH------HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-----TT
T ss_pred EEECCCCccCc-cCHHH------hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-----hh
Confidence 99999999986 33333 4788999999999999986 35678999999999999999844444 456 44
Q ss_pred ccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCccc
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISD 262 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 262 (622)
.+++ |++|++++|.+++..+. ++.+++|++|++++|.+.......+..+++|++|++++|++++..
T Consensus 146 ~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------ 212 (549)
T 2z81_A 146 GLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ------------ 212 (549)
T ss_dssp TCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC------------
T ss_pred cccc-cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc------------
Confidence 4555 99999999999988777 999999999999999987544334467899999999999987542
Q ss_pred CCchhHHhcCCCCcEEEccCCcCcccCCC---------CcccEEeCCCCcCcccc------CccccCCCCCCEEEccCCc
Q 037539 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPD---------LSLRFDDLSSNLLSGGL------PDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 263 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~L~~L~ls~n~l~~~~------~~~~~~~~~L~~L~L~~n~ 327 (622)
..|..+....++|+.|++++|.+.+..+. ..++.+++++|.+.+.. ...+..+++++.|++.++.
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 11222334457899999999988753321 26889999998876531 2345678899999999987
Q ss_pred ccccC-----CCccCCCCCccEEeeeCCcCCCCCCccc-cCCCCccEEEccCCcccccCchh--HHhhcccccEeecCCC
Q 037539 328 LSGKI-----PDSMGFLNNIWTLNLHNNRLTGKLPSPL-RNFSQLRVLDLEKNAIFGEIPTW--IGESLQNLIVLSLKSN 399 (622)
Q Consensus 328 i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~--~~~~l~~L~~L~L~~n 399 (622)
+.... +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++++|
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred cchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 76321 111233578999999999998 566555 67999999999999997666532 1236899999999999
Q ss_pred cCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 400 KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 400 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
++++..+. ...+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ ++..+ .++|++|++++|+++
T Consensus 372 ~l~~~~~~---~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 372 HLRSMQKT---GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp CCCCHHHH---HHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCS
T ss_pred cccccccc---hhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChh
Confidence 99854321 112337999999999999999 678888999999999999999984 44433 369999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcC
Q 037539 480 GSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLE 525 (622)
Q Consensus 480 ~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 525 (622)
+.. ..+++|++|++++|+++ .+|....+..++.+.+.+|..
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCC
T ss_pred hhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCcc
Confidence 643 57899999999999998 788777788888888888844
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=379.64 Aligned_cols=490 Identities=21% Similarity=0.181 Sum_probs=298.8
Q ss_pred CCcEEeCCCCCCCCC--------CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc
Q 037539 34 RLQELVLGLGKFFET--------SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI 104 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~--------~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L 104 (622)
++++|||++|.|+++ ++|++|+|++|.++.. +. +|.++++|++|+|++|++++..+ ..+.++ ++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~---~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L-~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLAL--GAFSGL-SSL 126 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECG--GGGTTC-TTC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh---HhcCCCCCCEEEccCCcCCCCCH--HHhcCC-CCC
Confidence 567777777766432 6677777777777666 44 56777777777777777766555 455666 777
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCC-CCchhhcCCccCcEeEeecCCCCCcCchhhhhcccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG-GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFG 183 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~ 183 (622)
++|++++|++++ +|. ..|+++++|++|++++|.++. ..|..++.+++|++|++++|++++..+..+..+.
T Consensus 127 ~~L~Ls~N~l~~--l~~-----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~-- 197 (635)
T 4g8a_A 127 QKLVAVETNLAS--LEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-- 197 (635)
T ss_dssp CEEECTTSCCCC--STT-----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--
T ss_pred CEEECCCCcCCC--CCh-----hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh--
Confidence 777777777664 221 234666777777777777654 3456666677777777777777766666554432
Q ss_pred ccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCc-cCccccCCCCCCCEEEccCCCCcccc------cccc--
Q 037539 184 CVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNG-TIDKSLSQLSKLESLSLDGNSLRAIS------LCIL-- 254 (622)
Q Consensus 184 ~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~-- 254 (622)
........++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+...... ...+
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 22222445666666666544443334445556665554321 11122333333433333211110000 0000
Q ss_pred -----------------------------------cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEE
Q 037539 255 -----------------------------------TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFD 297 (622)
Q Consensus 255 -----------------------------------~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L 297 (622)
...+.+. .++ . +.....++.|++.+|.+.+..+.. .++.+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK-D-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG-G-GGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc-c-cccchhhhhhhcccccccCcCcccchhhhhc
Confidence 0000000 001 0 112235666666666655433321 55566
Q ss_pred eCCCCcCccccCccccCCCCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 298 DLSSNLLSGGLPDCWLHFDRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 298 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
+++.|.+... .....+++|+.+++++|.+.. ..+..+..+.+|+.++++.+.+. ..+..+..+++|+.+++.++.
T Consensus 355 ~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 355 TFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSE
T ss_pred ccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcc
Confidence 6665554432 223456777777777776642 33444455667777777777665 344456677778888887777
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-ccchHHhhcccccceeecCCccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GAIPEEIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 454 (622)
.....+...+..+++++.++++.|.+.+..+..+. .++.++.|++++|.+. +..|..|..+++|++|+|++|++
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccccccccccccccccccccccccccccccccccc-----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence 65555555555677788888888887776666554 6777888888877643 34566777778888888888888
Q ss_pred cCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC-c-CCccCcccccCCcCCCCCCC-
Q 037539 455 TGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT-Q-LQSFNASVYAGNLELCGLPL- 531 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~-~-~~~l~~~~~~~n~~lc~~~~- 531 (622)
++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|... . ..+++.+.+.+||+.|+|..
T Consensus 507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 77777778888888888888888887777777788888888888888877666542 1 24566777788888887742
Q ss_pred -----------------CCCCCCCCCCCCCCCCCC
Q 037539 532 -----------------ANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 532 -----------------~~~C~~~~~~~~~~~~~~ 549 (622)
.+.|.+|...+|....+.
T Consensus 587 ~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 587 SFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp HHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred HHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence 257999988887766554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=371.20 Aligned_cols=459 Identities=18% Similarity=0.190 Sum_probs=317.0
Q ss_pred ccCcCCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCc
Q 037539 30 VNIERLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTS 103 (622)
Q Consensus 30 ~~l~~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~ 103 (622)
..+...+++|++++.+++. ++|++|++++|.+++. +. .+.++++|++|+|++|.+++..+ ..+..+ ++
T Consensus 28 ~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~ 101 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMP---DISFLSELRVLRLSHNRIRSLDF--HVFLFN-QD 101 (562)
T ss_dssp -----CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGG---GTTTCTTCCEEECCSCCCCEECT--TTTTTC-TT
T ss_pred cccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChh---hhccCCCccEEECCCCCCCcCCH--HHhCCC-CC
Confidence 3455568899999988766 6789999999998888 55 78889999999999999888777 677888 89
Q ss_pred ccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC-CchhhcCCccCcEeEeecCCCCCcCchhhhhccc
Q 037539 104 IETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSF 182 (622)
Q Consensus 104 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l 182 (622)
|++|++++|+++. +|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++..... +
T Consensus 102 L~~L~Ls~N~l~~--lp~~--------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----l 166 (562)
T 3a79_B 102 LEYLDVSHNRLQN--ISCC--------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP-----V 166 (562)
T ss_dssp CCEEECTTSCCCE--ECSC--------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG-----G
T ss_pred CCEEECCCCcCCc--cCcc--------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh-----h
Confidence 9999999998873 3321 678899999999998863 4678889999999999999887633222 1
Q ss_pred cccCCCcCEEEccCCcc--cccCCC-CCCCC-CCCEEEeecccCCccCc-cccCCCCCCCEEEccCCC------------
Q 037539 183 GCVVNSLEGLYLRWNDF--TGPIPH-LGGFS-SLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNS------------ 245 (622)
Q Consensus 183 ~~~~~~L~~L~L~~n~~--~~~~~~-l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~------------ 245 (622)
..+ + |++|++++|.+ ++..+. +..+. ..-.+++++|.+.+.++ ..+..+++|+.|++++|+
T Consensus 167 ~~L-~-L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 167 AHL-H-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp TTS-C-EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhc-e-eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 112 1 48999998888 665555 54433 11133555555543322 233445555555555553
Q ss_pred ----------------CcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCC-------C---cccEEeC
Q 037539 246 ----------------LRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPD-------L---SLRFDDL 299 (622)
Q Consensus 246 ----------------l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~---~L~~L~l 299 (622)
+.+.. +. .++.... .++|++|++++|.+.+.+|. . .++.+++
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~---------~~-~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKC---------SV-KLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHH---------HH-HHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred HhccCcceEEEecCCcCcHHH---------HH-HHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 22110 00 1112211 23777788877777766554 1 2333334
Q ss_pred CCCcCccccC-cccc---CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 300 SSNLLSGGLP-DCWL---HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 300 s~n~l~~~~~-~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
+.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 44443 222 1111 2256999999999886432 12678999999999999998889999999999999999999
Q ss_pred ccccCch--hHHhhcccccEeecCCCcCcccCChh-hhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 376 IFGEIPT--WIGESLQNLIVLSLKSNKFHGNIPYQ-FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 376 i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+ ..++. ..+..+++|++|++++|++++.+|.. +. .+++|++|++++|++++..|..+. ++|++|++++|
T Consensus 389 l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N 460 (562)
T 3a79_B 389 L-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN 460 (562)
T ss_dssp C-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS
T ss_pred c-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC
Confidence 9 44432 22337899999999999999755543 33 689999999999999877665543 79999999999
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccC---cccccCCcCCCCC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFN---ASVYAGNLELCGL 529 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~---~~~~~~n~~lc~~ 529 (622)
+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+|....+..+. ...+ .+...|+.
T Consensus 461 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (562)
T 3a79_B 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV-RNSAGSVA 538 (562)
T ss_dssp CCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTE-ECSSSSBC
T ss_pred cCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcc-cccccCCC
Confidence 998 677777799999999999999995444448999999999999999999877542212110 0011 11223466
Q ss_pred CCCCCCCC
Q 037539 530 PLANMCLD 537 (622)
Q Consensus 530 ~~~~~C~~ 537 (622)
+....|..
T Consensus 539 ~~~~~C~~ 546 (562)
T 3a79_B 539 PDSAKCSG 546 (562)
T ss_dssp SSSSCBSS
T ss_pred CCCCccCC
Confidence 77778876
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=364.86 Aligned_cols=453 Identities=22% Similarity=0.196 Sum_probs=352.3
Q ss_pred ccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCC--------CCCccEEEcCCcccCCC-CcchHhhcCCC
Q 037539 5 HIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFE--------TSNINTFFLNTVSVTKS-SDWFQVVAKLH 75 (622)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~L~~L~Ls~n~l~~~-~~~~~~l~~l~ 75 (622)
++++|+++++.+ +.+| ...+.++++|++|||++|.|++ +++|++|+|++|.++.. +. .|.+++
T Consensus 53 ~~~~LdLs~N~i-~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~---~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHLG----SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---AFSGLS 124 (635)
T ss_dssp TCCEEECTTSCC-CEEC----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG---GGTTCT
T ss_pred CCCEEEeeCCCC-CCCC----HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH---HhcCCC
Confidence 456889998875 5543 2334589999999999998844 38999999999999988 55 789999
Q ss_pred CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcC
Q 037539 76 SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGN 155 (622)
Q Consensus 76 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 155 (622)
+|++|+|++|.+++..+ ..+.++ ++|++|++++|.++.+..|..+ +.+++|++|++++|++++..+..|..
T Consensus 125 ~L~~L~Ls~N~l~~l~~--~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 125 SLQKLVAVETNLASLEN--FPIGHL-KTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp TCCEEECTTSCCCCSTT--CCCTTC-TTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCEEECCCCcCCCCCh--hhhhcC-cccCeeccccCccccCCCchhh------ccchhhhhhcccCccccccccccccc
Confidence 99999999999998877 678888 9999999999999875666655 78899999999999999888888776
Q ss_pred CccCc----EeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc------------------------------
Q 037539 156 MCSLK----KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG------------------------------ 201 (622)
Q Consensus 156 l~~L~----~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~------------------------------ 201 (622)
+.+++ .++++.|.+....+..+.... ++.+++.+|....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~-------~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCE-------EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchh-------hhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 65544 677888888765555433321 3344444332110
Q ss_pred -----------------------------cCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccc
Q 037539 202 -----------------------------PIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLC 252 (622)
Q Consensus 202 -----------------------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 252 (622)
....+..+.+++.+++.++.+.... .+.....|+.|++.+|.+...
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--- 343 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQF--- 343 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSC---
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCc---
Confidence 0011333445555555555544322 344556677777777765532
Q ss_pred cccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC---cccEEeCCCCcCcc--ccCccccCCCCCCEEEccCCc
Q 037539 253 ILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSG--GLPDCWLHFDRLFILNLANNR 327 (622)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 327 (622)
+. ...+.++.+++..|......+.. .++.++++.|.+.. ..+..+..+.+|+.+++..+.
T Consensus 344 ------------~~---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 344 ------------PT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ------------CC---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred ------------Cc---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 11 12358999999999877655443 79999999998864 456677788999999999998
Q ss_pred ccccCCCccCCCCCccEEeeeCCcCCCCC-CccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-cC
Q 037539 328 LSGKIPDSMGFLNNIWTLNLHNNRLTGKL-PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG-NI 405 (622)
Q Consensus 328 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 405 (622)
+.. .+..+..+++|+.++++.+...... ...+..+++++.+++++|.+.+..+. .+..++.|++|++++|.+.. ..
T Consensus 409 ~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 409 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp EEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccC
Confidence 874 4556788999999999988765443 35688999999999999999555544 44479999999999998553 45
Q ss_pred ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc
Q 037539 406 PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS 485 (622)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 485 (622)
|..+. .+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..
T Consensus 487 ~~~~~-----~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 487 PDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred chhhh-----hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 55555 7999999999999999888999999999999999999999888999999999999999999999999999
Q ss_pred ccCC-CCCCEEECcCCcCcccCCC
Q 037539 486 LSQL-SGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 486 l~~l-~~L~~L~ls~N~l~~~~p~ 508 (622)
+..+ ++|++|++++|++.|.+..
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHhhhCcCCEEEeeCCCCcccCCc
Confidence 9988 6899999999999998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=364.30 Aligned_cols=428 Identities=21% Similarity=0.204 Sum_probs=322.2
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
...+++++++|.++..|. .+. ++|++|++++|.+++..+ ..+..+ ++|++|++++|++++ ..| .+
T Consensus 31 ~~~~~l~ls~~~L~~ip~---~~~--~~L~~L~Ls~N~i~~~~~--~~~~~l-~~L~~L~Ls~N~l~~-~~~------~~ 95 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPK---DLP--PRTKALSLSQNSISELRM--PDISFL-SELRVLRLSHNRIRS-LDF------HV 95 (562)
T ss_dssp --CCEEECTTSCCCSCCT---TSC--TTCCEEECCSSCCCCCCG--GGTTTC-TTCCEEECCSCCCCE-ECT------TT
T ss_pred CCCcEEEcCCCCCccCCC---CCC--CCcCEEECCCCCccccCh--hhhccC-CCccEEECCCCCCCc-CCH------HH
Confidence 445999999999998865 443 899999999999999877 788899 999999999999986 223 34
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCc-CchhhhhccccccCCCcCEEEccCCcccccCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQ-YSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLG 207 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~ 207 (622)
|..+++|++|++++|.++ .+|.. .+++|++|++++|++++. .|..+. .+++ |++|++++|.+.+. .+.
T Consensus 96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-----~l~~-L~~L~L~~n~l~~~--~~~ 164 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG-----NLTK-LTFLGLSAAKFRQL--DLL 164 (562)
T ss_dssp TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG-----GCTT-CCEEEEECSBCCTT--TTG
T ss_pred hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc-----ccCc-ccEEecCCCccccC--chh
Confidence 588999999999999999 55655 899999999999999974 357744 4455 99999999998752 356
Q ss_pred CCCCC--CEEEeecccC--CccCccccCCCC--CCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEcc
Q 037539 208 GFSSL--EAWSLDVNCL--NGTIDKSLSQLS--KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281 (622)
Q Consensus 208 ~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 281 (622)
.+++| ++|++++|.+ ++..+..+..+. .+ .+++++|.+.+. ++......+++|+.++++
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~--------------~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSV--------------QVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCC--------------CCEEEESSEEEEEEEEEE
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhh--------------hhhhcccccceEEEeccc
Confidence 66666 9999999999 888888877655 23 557777776542 222222223344555554
Q ss_pred CC----------------------------cCcccC--------CCCcccEEeCCCCcCccccCccc-----cCCCCCCE
Q 037539 282 NN----------------------------HFRGKL--------PDLSLRFDDLSSNLLSGGLPDCW-----LHFDRLFI 320 (622)
Q Consensus 282 ~n----------------------------~l~~~~--------~~~~L~~L~ls~n~l~~~~~~~~-----~~~~~L~~ 320 (622)
+| .+.+.. ...++++|++++|.+.+.+|..+ ..++.|+.
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 44 332210 01167777777777776666655 44555555
Q ss_pred EEccCCcccccCC-CccC---CCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 321 LNLANNRLSGKIP-DSMG---FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 321 L~L~~n~i~~~~~-~~~~---~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
++++.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 384 (562)
T 3a79_B 310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLIL 384 (562)
T ss_dssp EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEEC
T ss_pred hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEEC
Confidence 55555554 222 1111 1256899999999886332 236889999999999999777777765 7999999999
Q ss_pred CCCcCcccC--ChhhhHhHhhhcCCccEEECCCCcCCccchH-HhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 397 KSNKFHGNI--PYQFENEYKSTLGLVRCLDLSSNKLDGAIPE-EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 397 ~~n~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
++|++++.. |..+. .+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..|..+. ++|++|+|
T Consensus 385 ~~N~l~~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 385 QRNGLKNFFKVALMTK-----NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp CSSCCCBTTHHHHTTT-----TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred CCCCcCCcccchhhhc-----CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 999998643 23333 799999999999999974554 588899999999999999876666554 79999999
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCCC
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLPL 531 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~ 531 (622)
++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+||+.|+|+.
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999 67777779999999999999999 56654 4567788889999999998753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=343.28 Aligned_cols=383 Identities=21% Similarity=0.200 Sum_probs=271.4
Q ss_pred CCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCC-CchhhcC
Q 037539 77 LKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-IPKFFGN 155 (622)
Q Consensus 77 L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~ 155 (622)
-+.++.+++.++.. | .++++|++|++++|.+++ ..|. .|+.+++|++|++++|.+.+. .+..|.+
T Consensus 12 ~~~~~c~~~~l~~l-p------~l~~~l~~L~Ls~n~i~~-~~~~------~~~~l~~L~~L~L~~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 12 GYNAICINRGLHQV-P------ELPAHVNYVDLSLNSIAE-LNET------SFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77 (455)
T ss_dssp TTEEECCSSCCSSC-C------CCCTTCCEEECCSSCCCE-ECTT------TTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred ccccCcCCCCcccC-C------CCCCccCEEEecCCccCc-CChh------HhccCccccEEECcCCcccceECcccccc
Confidence 34567777766543 3 134778888888888875 2232 347778888888888877643 3566788
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCC--C-CCCCCCCCEEEeecccCCccCccc-cC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP--H-LGGFSSLEAWSLDVNCLNGTIDKS-LS 231 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~~-l~ 231 (622)
+++|++|++++|++++..|..+.. +++ |++|++++|.+++..+ . ++.+++|++|++++|.+++..|.. +.
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNG-----LAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTT-----CTT-CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccCCEEeCCCCccCccChhhccC-----ccc-CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 888888888888887777777443 444 8888888888775322 2 777888888888888887766655 67
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhc-CCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDL-SNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~ 310 (622)
.+++|++|++++|.+++.. +..+... .++++.|++++|.+.+..+.. +......
T Consensus 152 ~l~~L~~L~L~~n~l~~~~--------------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~-----------~~~~~~~ 206 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSIC--------------EEDLLNFQGKHFTLLRLSSITLQDMNEYW-----------LGWEKCG 206 (455)
T ss_dssp GCTTCCEEECTTCCBSCCC--------------TTTSGGGTTCEEEEEECTTCBCTTCSTTC-----------TTHHHHC
T ss_pred CCCcccEEeCCCCcccccC--------------hhhhhccccccccccccccCcccccchhh-----------ccccccc
Confidence 7888888888888776432 2222221 135667777766665432210 0000001
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCC---CCCccEEeeeCCcCCC----------CCCcccc--CCCCccEEEccCCc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGF---LNNIWTLNLHNNRLTG----------KLPSPLR--NFSQLRVLDLEKNA 375 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~---l~~L~~L~Ls~n~i~~----------~~~~~l~--~l~~L~~L~L~~n~ 375 (622)
.+..+++|++|++++|++++..|..+.. .++|+.|++++|...+ ..+..+. ..++|++|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 1223455666666666665544443322 2556666666554332 1112222 23689999999999
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+.+..|..+. .+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+..+..+++|++|+|++|.++
T Consensus 287 l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 287 IFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFW-----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ccccchhhcc-cCCCCCEEECCCCcccccChhHhc-----CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 9666666555 789999999999999988777776 7899999999999999888999999999999999999999
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCC
Q 037539 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGT 510 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~ 510 (622)
+..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|...
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 8889999999999999999999998777788999999999999999999999653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=335.18 Aligned_cols=380 Identities=22% Similarity=0.207 Sum_probs=241.6
Q ss_pred cEEeCCCCCCCCC----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEcc
Q 037539 36 QELVLGLGKFFET----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLS 110 (622)
Q Consensus 36 ~~L~L~~n~i~~~----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls 110 (622)
+.++.+++.++.+ ++|++|++++|.+++. +. .+.++++|++|++++|.+.+..+. ..+..+ ++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l-~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET---SFSRLQDLQFLKVEQQTPGLVIRN-NTFRGL-SSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT---TTSSCTTCCEEECCCCSTTCEECT-TTTTTC-TTCCEEECT
T ss_pred cccCcCCCCcccCCCCCCccCEEEecCCccCcCChh---HhccCccccEEECcCCcccceECc-cccccc-ccCCEEeCC
Confidence 3566666665554 5677777777777776 55 677777777777777777644321 456666 777777777
Q ss_pred CCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchh--hcCCccCcEeEeecCCCCCcCchhhhhccccccCCC
Q 037539 111 DNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKF--FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188 (622)
Q Consensus 111 ~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~ 188 (622)
+|++++ ..|. .|+.+++|++|++++|.+++..+.. |..+++|++|++++|.+++..|..+ +..+++
T Consensus 88 ~n~l~~-~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l~~- 155 (455)
T 3v47_A 88 YNQFLQ-LETG------AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF----FLNMRR- 155 (455)
T ss_dssp TCTTCE-ECTT------TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG----GGGCTT-
T ss_pred CCccCc-cChh------hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc----cCCCCc-
Confidence 777764 2233 3366777777777777777544443 7777777777777777776666542 233333
Q ss_pred cCEEEccCCcccccCCC-CCCC--CCCCEEEeecccCCccCccc--------cCCCCCCCEEEccCCCCcccccccccCC
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGF--SSLEAWSLDVNCLNGTIDKS--------LSQLSKLESLSLDGNSLRAISLCILTSP 257 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 257 (622)
|++|++++|.+.+..+. +..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--------- 226 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE--------- 226 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH---------
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc---------
Confidence 77777777777766655 5544 56777777777776544332 2345667777777776653
Q ss_pred CCcccCCchhHHhc--CCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCc
Q 037539 258 IGISDSIPDWFWDL--SNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDS 335 (622)
Q Consensus 258 ~~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 335 (622)
.+|..+... .++++.|++++|...+... ..+.+.+..+..+..+
T Consensus 227 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~-------------------- 272 (455)
T 3v47_A 227 -----SMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------GHTNFKDPDNFTFKGL-------------------- 272 (455)
T ss_dssp -----HHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------TCCSSCCCCTTTTGGG--------------------
T ss_pred -----cchhhhhccccccceeeEeecccccccccc---------chhhhccCcccccccc--------------------
Confidence 334444432 1456666666655432110 0111111111111110
Q ss_pred cCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhh
Q 037539 336 MGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKS 415 (622)
Q Consensus 336 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 415 (622)
..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+.
T Consensus 273 --~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~----- 344 (455)
T 3v47_A 273 --EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFE----- 344 (455)
T ss_dssp --TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGT-----
T ss_pred --cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhc-----
Confidence 124566666666666655555666666666666666666433333333 566666666666666655555544
Q ss_pred hcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCC
Q 037539 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP 483 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 483 (622)
.+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 67778888888888887778888889999999999999987777778899999999999999997766
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=330.16 Aligned_cols=374 Identities=26% Similarity=0.265 Sum_probs=239.3
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc-------------cEEEccCCCCC
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI-------------ETLDLSDNNLP 115 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L-------------~~L~Ls~n~l~ 115 (622)
++|++|++++|.+...|. .++++++|++|++++|.+.+..| ..+.++ ++| ++|++++|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~---~i~~L~~L~~L~l~~n~~~~~~p--~~~~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPV---EAENVKSKTEYYNAWSEWERNAP--PGNGEQ-REMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSC--TTSCCC-HHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcccCchhhCCh---hHhcccchhhhhccCCcccccCC--cccccc-hhcchhhhhhhhccCCCEEEecCCccc
Confidence 566777777777744455 67777777777777777766666 556655 543 77888888776
Q ss_pred CCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEcc
Q 037539 116 SSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLR 195 (622)
Q Consensus 116 ~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~ 195 (622)
+ +|. ..++|++|++++|.+++ +|.. +++|++|++++|.+++... .+.+|++|+++
T Consensus 85 ~--lp~---------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----------~~~~L~~L~L~ 139 (454)
T 1jl5_A 85 S--LPE---------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----------LPPLLEYLGVS 139 (454)
T ss_dssp C--CCS---------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----------CCTTCCEEECC
T ss_pred c--CCC---------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----------CCCCCCEEECc
Confidence 4 332 12677888888887775 4532 3677888888887765221 11148888888
Q ss_pred CCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 196 WNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 196 ~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
+|.+++ +|.++.+++|++|++++|.+++ +|.. .++|++|++++|++++ +|. + ..+++|
T Consensus 140 ~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~---------------l~~-~-~~l~~L 197 (454)
T 1jl5_A 140 NNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE---------------LPE-L-QNLPFL 197 (454)
T ss_dssp SSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS---------------CCC-C-TTCTTC
T ss_pred CCCCCC-CcccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc---------------Ccc-c-cCCCCC
Confidence 887775 4567778888888888887774 3433 2478888888887763 332 2 334678
Q ss_pred cEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCC
Q 037539 276 SYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 353 (622)
++|++++|++.+ +|.. +++.|++++|.+. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|.+.
T Consensus 198 ~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 888888887775 3332 7888888888887 555 48889999999999999985 4432 478999999999998
Q ss_pred CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 354 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
+ +|.. .++|++|++++|.+.+ +|. ..++|++|++++|++++... ..++|++|++++|++++
T Consensus 271 ~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~~---------~~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 271 D-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLCD---------LPPSLEELNVSNNKLIE- 331 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEECC---------CCTTCCEEECCSSCCSC-
T ss_pred c-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcccC---------CcCcCCEEECCCCcccc-
Confidence 5 4543 3789999999999843 432 13689999999999885321 23589999999999985
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCc--cCCccccCC-------------CCCCEEECc
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG--SIPCSLSQL-------------SGLGVLDLS 498 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l-------------~~L~~L~ls 498 (622)
+|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+..+ ++|++|+++
T Consensus 332 lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 5543 5889999999999984 555 47899999999999998 678888777 889999999
Q ss_pred CCcCcc--cCCC
Q 037539 499 YNNLSG--KIPS 508 (622)
Q Consensus 499 ~N~l~~--~~p~ 508 (622)
+|++++ .+|.
T Consensus 405 ~N~l~~~~~iP~ 416 (454)
T 1jl5_A 405 TNPLREFPDIPE 416 (454)
T ss_dssp ------------
T ss_pred CCcCCccccchh
Confidence 999997 6664
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.58 Aligned_cols=324 Identities=19% Similarity=0.163 Sum_probs=166.5
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSL 212 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L 212 (622)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..+ ..+++ |++|+|++|.++...+. |.++++|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-----NNLFN-LRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-----TTCTT-CCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-----hCCcc-CCEEECCCCcCCccCcccccCCCCC
Confidence 44555555555554444455555555555555555554444442 22222 55555555555444333 4555555
Q ss_pred CEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC
Q 037539 213 EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL 292 (622)
Q Consensus 213 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 292 (622)
++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------------------- 142 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------------------------------------------- 142 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--------------------------------------------
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccce--------------------------------------------
Confidence 555555555554444455555555555555554432
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 143 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 143 --------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp --------------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred --------------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 112223334444444444444443333334444445555555554444444444455555555555
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|...+.++...+ ...+|+.|++++|.++...+..+. .+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 209 ~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 209 HWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVR-----HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHT-----TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred CCccccccCcccc-cCccccEEECcCCcccccCHHHhc-----CccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 5444444444443 233555555555555533322222 4555666666666665555555666666666666666
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELC 527 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 527 (622)
.+++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++..+.+.......+.++...|
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBE
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCcee
Confidence 666666666666666777777776666655556666666777777777766655433222222223344444444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=324.23 Aligned_cols=397 Identities=23% Similarity=0.289 Sum_probs=224.5
Q ss_pred ccccCCCCcccchhhHHHHHhhcccccccCcCCcEEeCCCCCCCCC--------C-------------CccEEEcCCccc
Q 037539 3 YKHIPHTSNSQQNFIVDLLINLGQHLEVNIERLQELVLGLGKFFET--------S-------------NINTFFLNTVSV 61 (622)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~-------------~L~~L~Ls~n~l 61 (622)
.+++++++++++++ +.+|.+++ ++++|++|++++|.+.+. + ++++|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~-----~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAE-----NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCch-hhCChhHh-----cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 46788899999887 88888777 899999999998876432 2 358899999988
Q ss_pred CCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEee
Q 037539 62 TKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLS 141 (622)
Q Consensus 62 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 141 (622)
++.|.+ .++|++|++++|.+++ .| . .. ++|++|++++|++++ +|. ..++|++|+++
T Consensus 84 ~~lp~~------~~~L~~L~l~~n~l~~-lp--~---~~-~~L~~L~l~~n~l~~--l~~---------~~~~L~~L~L~ 139 (454)
T 1jl5_A 84 SSLPEL------PPHLESLVASCNSLTE-LP--E---LP-QSLKSLLVDNNNLKA--LSD---------LPPLLEYLGVS 139 (454)
T ss_dssp SCCCSC------CTTCSEEECCSSCCSS-CC--C---CC-TTCCEEECCSSCCSC--CCS---------CCTTCCEEECC
T ss_pred ccCCCC------cCCCCEEEccCCcCCc-cc--c---cc-CCCcEEECCCCccCc--ccC---------CCCCCCEEECc
Confidence 887641 3688999999998887 34 1 23 788999999998874 221 12689999999
Q ss_pred cccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeeccc
Q 037539 142 DSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221 (622)
Q Consensus 142 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~ 221 (622)
+|.+++ +| .|+.+++|++|++++|++++ .|..+ . +|++|++++|.+++ +|.++.+++|++|++++|.
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--------~-~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--------P-SLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--------T-TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--------c-cccEEECcCCcCCc-CccccCCCCCCEEECCCCc
Confidence 998885 66 58889999999999998886 34321 1 49999999998886 4568888999999999998
Q ss_pred CCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeC
Q 037539 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDL 299 (622)
Q Consensus 222 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~l 299 (622)
+++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++.+ +|.. +++.|++
T Consensus 207 l~~-l~~~---~~~L~~L~l~~n~l~---------------~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l 264 (454)
T 1jl5_A 207 LKK-LPDL---PLSLESIVAGNNILE---------------ELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNV 264 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSCCS---------------SCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEEC
T ss_pred CCc-CCCC---cCcccEEECcCCcCC---------------cccc--cCCCCCCCEEECCCCcCCc-ccccccccCEEEC
Confidence 885 3332 258899999998876 3443 2345688889888888875 3332 6777777
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCC-CCccEEEccCCcccc
Q 037539 300 SSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNF-SQLRVLDLEKNAIFG 378 (622)
Q Consensus 300 s~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~i~~ 378 (622)
++|.+.+ +|.. +++|++|++++|++++. +. ..++|++|++++|.+++ ++ .+ ++|++|++++|.+.
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~- 330 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI- 330 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS-
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccc-
Confidence 7777765 3332 35677777777777642 11 12567777777777763 21 22 46777777777773
Q ss_pred cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc--cchHHhhcccccceeecCCccccC
Q 037539 379 EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSRNHLTG 456 (622)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 456 (622)
.+|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.++ +.|.+.+
T Consensus 331 ~lp~~----~~~L~~L~L~~N~l~~-lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~ 389 (454)
T 1jl5_A 331 ELPAL----PPRLERLIASFNHLAE-VPE--------LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLA 389 (454)
T ss_dssp CCCCC----CTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---
T ss_pred ccccc----CCcCCEEECCCCcccc-ccc--------hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccc
Confidence 35543 4677777777777763 332 25667777777777765 445443322 2344444
Q ss_pred CCccccCCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 457 PITPKIGELTSLDFLDLSRNLFSG--SIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 457 ~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.+|.. +++|+.|++++|++++ .+|. +++.|.+.+|.+.+.+|.
T Consensus 390 ~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 390 EVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------------------------------------------------------
T ss_pred ccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 55542 4899999999999996 4553 577788899988876554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=313.95 Aligned_cols=303 Identities=25% Similarity=0.364 Sum_probs=180.0
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l 209 (622)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++ |++|++++|.+.+ .+.+..+
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~-L~~L~l~~n~l~~-~~~~~~l 155 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-------LKNLTN-LNRLELSSNTISD-ISALSGL 155 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTT-CSEEEEEEEEECC-CGGGTTC
T ss_pred hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-------HcCCCC-CCEEECCCCccCC-ChhhccC
Confidence 344444444444444443222 4444444444444444443322 222222 5555555544443 2224445
Q ss_pred CCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccC
Q 037539 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 289 (622)
++|++|+++ +.+.+.. .+..+++|++|++++|.+++. +. ...+++|++|++++|.+.+
T Consensus 156 ~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~---------------~~--l~~l~~L~~L~l~~n~l~~-- 213 (466)
T 1o6v_A 156 TSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI---------------SV--LAKLTNLESLIATNNQISD-- 213 (466)
T ss_dssp TTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC---------------GG--GGGCTTCSEEECCSSCCCC--
T ss_pred CcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC---------------hh--hccCCCCCEEEecCCcccc--
Confidence 555555553 2232221 255555555555555555421 11 1222355555555544431
Q ss_pred CCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 290 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
..+ +..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 214 -----------------~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 214 -----------------ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp -----------------CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred -----------------ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 111 44556666666666666543 245666777777777777764433 6677777777
Q ss_pred EccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
++++|.+. .++. + ..+++|+.|++++|++.+..+ + ..+++|+.|++++|++++..| +..+++|++|++
T Consensus 271 ~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~-----~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 271 KLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--I-----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--G-----GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred ECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--h-----cCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 77777773 3333 2 257777777777777775443 2 267888888888888876655 678888888888
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888864 567888899999999998887766 7888889999999998885
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=311.57 Aligned_cols=345 Identities=23% Similarity=0.360 Sum_probs=260.2
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++++.|+++++.+...+ .+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++ ++.
T Consensus 46 ~~l~~L~l~~~~i~~l~----~~~~l~~L~~L~Ls~n~l~~~~----~~~~l-~~L~~L~l~~n~l~~--~~~------- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT----PLKNL-TKLVDILMNNNQIAD--ITP------- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCEEECCSSCCCC--CGG-------
T ss_pred ccccEEecCCCCCccCc----chhhhcCCCEEECCCCccCCch----hhhcc-ccCCEEECCCCcccc--Chh-------
Confidence 56777777777666554 3667788888888888877653 26667 888888888888764 221
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. . ++.+++ |++|+++ |.+.+. +.+..
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~-----~~~l~~-L~~L~l~-~~~~~~-~~~~~ 175 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--A-----LSGLTS-LQQLSFG-NQVTDL-KPLAN 175 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--G-----GTTCTT-CSEEEEE-ESCCCC-GGGTT
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--h-----hccCCc-ccEeecC-CcccCc-hhhcc
Confidence 4677888888888888875432 788888888888888877532 2 444555 8888886 333332 23778
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
+++|++|++++|.+++. ..+..+++|++|++++|.+++.. | ...+++|+.|++++|++.+
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------------~---~~~l~~L~~L~l~~n~l~~- 235 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT--------------P---LGILTNLDELSLNGNQLKD- 235 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------------G---GGGCTTCCEEECCSSCCCC-
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc--------------c---ccccCCCCEEECCCCCccc-
Confidence 88888888888888754 34778888888988888876422 2 2334678888888777652
Q ss_pred CCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccE
Q 037539 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368 (622)
Q Consensus 289 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 368 (622)
+ ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 236 -------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 236 -------------------I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp -------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -------------------c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 1 346778889999999998886544 7888999999999999885433 788999999
Q ss_pred EEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceee
Q 037539 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALN 448 (622)
Q Consensus 369 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 448 (622)
|++++|.+.+ ++. + ..+++|+.|++++|++.+..| +. .+++|+.|++++|++++. ..+..+++|+.|+
T Consensus 292 L~L~~n~l~~-~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~-----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 292 LELNENQLED-ISP-I-SNLKNLTYLTLYFNNISDISP--VS-----SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp EECCSSCCSC-CGG-G-GGCTTCSEEECCSSCCSCCGG--GG-----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred EEcCCCcccC-chh-h-cCCCCCCEEECcCCcCCCchh--hc-----cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 9999999844 443 3 368999999999999987665 22 689999999999999865 4788999999999
Q ss_pred cCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 449 LSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 449 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
+++|++++..| +..+++|+.|++++|++++.
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999997766 88999999999999999853
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=312.24 Aligned_cols=347 Identities=20% Similarity=0.173 Sum_probs=230.2
Q ss_pred CEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCc
Q 037539 78 KSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMC 157 (622)
Q Consensus 78 ~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 157 (622)
+.++.+++.++.... .+++++++|++++|++++ . ....|..+++|++|+|++|.+++..|.+|.+++
T Consensus 14 ~~v~c~~~~l~~ip~------~~~~~l~~L~L~~n~l~~-~------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE------GIPTETRLLDLGKNRIKT-L------NQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TEEECCSCCCSSCCS------CCCTTCSEEECCSSCCCE-E------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CEEEeCCCCcCcCCC------CCCCCCcEEECCCCccce-E------CHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 567777777765432 234778888888888875 2 223457888999999999988887888899999
Q ss_pred cCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCC
Q 037539 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236 (622)
Q Consensus 158 ~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 236 (622)
+|++|++++|.+++..+.. |..+++ |++|++++|.+.+..+. |..+++|++|++++|.+++..+..|..+++|
T Consensus 81 ~L~~L~L~~n~l~~~~~~~-----~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGV-----FTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TCCEEECCSSCCCSCCTTS-----STTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred cCCEEECCCCcCCccCccc-----ccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 9999999999988766666 444555 99999999999887777 8899999999999999988888889999999
Q ss_pred CEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCC
Q 037539 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD 316 (622)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 316 (622)
++|++++|.++ .++...+..+++|+.
T Consensus 155 ~~L~l~~n~l~---------------~~~~~~l~~l~~L~~--------------------------------------- 180 (477)
T 2id5_A 155 EQLTLEKCNLT---------------SIPTEALSHLHGLIV--------------------------------------- 180 (477)
T ss_dssp CEEEEESCCCS---------------SCCHHHHTTCTTCCE---------------------------------------
T ss_pred CEEECCCCcCc---------------ccChhHhcccCCCcE---------------------------------------
Confidence 99999988876 333333333334444
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
|++++|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|.+ ..+|...+..+++|+.|++
T Consensus 181 ----L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 181 ----LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp ----EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEEC
T ss_pred ----EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeEC
Confidence 44444444444444444555555555555544444443333444566666666665 3455444445666666666
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++++..+..+. .+++|+.|+|++|++.+..|..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 256 s~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 256 SYNPISTIEGSMLH-----ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSSCCCEECTTSCT-----TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCCcCCccChhhcc-----ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666655444443 5666777777777777666667777777777777777777666666777777777777777
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
++....+.. .-......+++.++...|..|.
T Consensus 331 ~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 331 PLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred CccCccchH-hHHhhhhccccCccCceeCCch
Confidence 776432211 1112233445566666665554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=308.80 Aligned_cols=342 Identities=17% Similarity=0.174 Sum_probs=207.4
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|++|++++|.+++.+ .+..+++|++|++++|.+++. + +..+ ++|++|++++|+++++ +
T Consensus 42 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~-~----~~~l-~~L~~L~Ls~N~l~~~--~-------- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTL-D----LSQN-TNLTYLACDSNKLTNL--D-------- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCC-C----CTTC-TTCSEEECCSSCCSCC--C--------
T ss_pred CCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeE-c----cccC-CCCCEEECcCCCCcee--e--------
Confidence 55555555555555543 356667777777777766653 1 4455 6677777777776641 1
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
++.+++|++|++++|.+++. + ++.+++|++|++++|++++. + ++.+++ |++|++++|...+.. .+..
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-------l~~l~~-L~~L~l~~n~~~~~~-~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-------VSHNTQ-LTELDCHLNKKITKL-DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-------CTTCTT-CCEEECTTCSCCCCC-CCTT
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c-------cccCCc-CCEEECCCCCccccc-cccc
Confidence 35666777777777776642 2 66667777777777766653 2 334444 777777776544333 3566
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
+++|++|++++|.+++. + +..+++|++|++++|.+++.. ...+++|+.|++++|++.+
T Consensus 169 l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~------------------l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD------------------LNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC------------------CTTCTTCSEEECCSSCCSC-
T ss_pred CCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec------------------cccCCCCCEEECcCCcccc-
Confidence 66777777777776653 2 566667777777777665321 1122455555555555542
Q ss_pred CCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCc----------cEEeeeCCcCCCCCCc
Q 037539 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNI----------WTLNLHNNRLTGKLPS 358 (622)
Q Consensus 289 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L----------~~L~Ls~n~i~~~~~~ 358 (622)
+| +..+++|+.|++++|++++..+ ..+++| +.|++++|.+.+.+|
T Consensus 227 -------------------ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 227 -------------------ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp -------------------CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred -------------------cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 22 3444555555555555554322 223333 344444444443333
Q ss_pred cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
+..+++|+.|++++|...+.+|. ..++|+.|+++ .+++|++|++++|++++. + +
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~------------------~~~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLS------------------QNPKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCT------------------TCTTCCEEECTTCCCSCC-C--C
T ss_pred -ccccccCCEEECCCCcccceecc----CCCcceEechh------------------hcccCCEEECCCCccccc-c--c
Confidence 34556666666666655455543 23455555544 345788888888888864 2 7
Q ss_pred hcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 439 MDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+++++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 788888888888888875 35667777888888765 34456788899999999999875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=305.61 Aligned_cols=351 Identities=17% Similarity=0.127 Sum_probs=283.3
Q ss_pred ccccCcCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhcccc
Q 037539 28 LEVNIERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLS 101 (622)
Q Consensus 28 ~~~~l~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 101 (622)
.++++++|++|++++|.+++. ++|++|++++|.+++. .+..+++|++|++++|.+++. + +..+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~~-~----~~~l- 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNL-D----VTPL- 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCC-C----CTTC-
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCcee-e----cCCC-
Confidence 345789999999999999775 8999999999999987 377899999999999999885 2 5677
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
++|++|++++|+++++ | ++.+++|++|++++|.+++. .++.+++|++|++++|+..+..+
T Consensus 106 ~~L~~L~L~~N~l~~l--~--------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~------- 165 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL--D--------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD------- 165 (457)
T ss_dssp TTCCEEECCSSCCSCC--C--------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC-------
T ss_pred CcCCEEECCCCcCCee--c--------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc-------
Confidence 9999999999999862 2 47889999999999999964 38899999999999996554443
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
++.+++ |++|++++|.+++. + ++.+++|++|++++|.+++. .+..+++|++|++++|++++
T Consensus 166 ~~~l~~-L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~------------- 226 (457)
T 3bz5_A 166 VTPQTQ-LTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE------------- 226 (457)
T ss_dssp CTTCTT-CCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-------------
T ss_pred cccCCc-CCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-------------
Confidence 555666 99999999999874 3 88999999999999999975 48899999999999999874
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 339 (622)
+| ...+++|+.|++++|++.+..+.. .++.|+++.| +|+.|++++|.+.+.+| ++.+
T Consensus 227 --ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 --ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp --CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred --cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence 34 233569999999999998754432 6777776654 46678888888776665 4678
Q ss_pred CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCC
Q 037539 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGL 419 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 419 (622)
++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +. .+++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~-----~l~~ 340 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VS-----HNTK 340 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CT-----TCTT
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cc-----cCCc
Confidence 9999999999987766553 3456666665544 6788999999999874 2 33 6899
Q ss_pred ccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 037539 420 VRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLS 487 (622)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 487 (622)
|+.|++++|++++ ++.|..|++++|.+.+. ..+..|+.+++++|+++|.+|..+.
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 9999999999984 35677788999988864 3456788899999999998887653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=298.00 Aligned_cols=333 Identities=20% Similarity=0.221 Sum_probs=192.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
+++++|++++|.++. +|..+ |..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+
T Consensus 45 ~~l~~l~l~~~~l~~--l~~~~-----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK--LPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---- 113 (390)
T ss_dssp CCCSEEEEESCEESE--ECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT----
T ss_pred CCceEEEecCCchhh--CChhH-----hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh----
Confidence 566666666666652 33221 3455666666666666665555566666666666666666666555553
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
+.+++ |++|++++|.+....+. |+.+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 114 -~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------- 181 (390)
T 3o6n_A 114 -QNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------- 181 (390)
T ss_dssp -TTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------
T ss_pred -cCCCC-CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------
Confidence 33333 66666666666644444 566666666666666666555555666666666666666654211
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+..+++|+.|++++|.+++. ...+
T Consensus 182 ---------------------------------------------------~~~l~~L~~L~l~~n~l~~~-----~~~~ 205 (390)
T 3o6n_A 182 ---------------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPI 205 (390)
T ss_dssp ---------------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCS
T ss_pred ---------------------------------------------------cccccccceeeccccccccc-----CCCC
Confidence 12233344444444433321 1223
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
+|++|++++|.+... +. ...++|++|++++|.+.+ .+ .+. .+++|++|++++|.+.+..|..+. .+++|
T Consensus 206 ~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L 274 (390)
T 3o6n_A 206 AVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD-TA-WLL-NYPGLVEVDLSYNELEKIMYHPFV-----KMQRL 274 (390)
T ss_dssp SCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCEEESGGGT-----TCSSC
T ss_pred cceEEECCCCeeeec-cc--cccccccEEECCCCCCcc-cH-HHc-CCCCccEEECCCCcCCCcChhHcc-----ccccC
Confidence 444444544444422 11 112455555555555522 21 222 455666666666666555554444 56666
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|++|++++|
T Consensus 275 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSS
T ss_pred CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCC
Confidence 666666666663 4445566777888888888777 4566677778888888888888744 2 567788888999998
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++.+.... ..+..+....+.+++..|.++
T Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 350 DWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88875433 244555555566666666543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.94 Aligned_cols=333 Identities=20% Similarity=0.228 Sum_probs=195.8
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
.+++.|++++|.++. +|..+ |..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..
T Consensus 51 ~~l~~l~l~~~~l~~--lp~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK--LPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----- 118 (597)
T ss_dssp CCCSEEEESSCEESE--ECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----
T ss_pred CCceEEEeeCCCCCC--cCHHH-----HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-----
Confidence 556666666666552 33221 345566666666666666555556666666666666666666655555
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
|+.+++ |++|+|++|.+++..+. |+.+++|++|++++|.+++..|..|..+++|++|++++|.+++.+
T Consensus 119 ~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------- 187 (597)
T 3oja_B 119 FQNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------- 187 (597)
T ss_dssp TTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------
T ss_pred HcCCCC-CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------
Confidence 333333 66666666666654444 566666666666666666555555666666666666666554221
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+..+++|+.|++++|.+++. ...+
T Consensus 188 ---------------------------------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~ 211 (597)
T 3oja_B 188 ---------------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPI 211 (597)
T ss_dssp ---------------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCT
T ss_pred ---------------------------------------------------hhhhhhhhhhhcccCccccc-----cCCc
Confidence 12233344444444433321 1223
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
+|+.|++++|.+....+. + .++|+.|++++|.+.+ . ..+. .+++|+.|++++|.+.+.+|..+. .+++|
T Consensus 212 ~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L 280 (597)
T 3oja_B 212 AVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD-T-AWLL-NYPGLVEVDLSYNELEKIMYHPFV-----KMQRL 280 (597)
T ss_dssp TCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCEEESGGGT-----TCSSC
T ss_pred hhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC-C-hhhc-cCCCCCEEECCCCccCCCCHHHhc-----CccCC
Confidence 444444444444422111 1 1355555555555532 1 2222 456666666666666655555544 56666
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC
Confidence 777777776663 4555566778888888888887 56666777888888888888887542 567788999999999
Q ss_pred cCcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 501 NLSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 501 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++.|.++.. .+..+....+.+++..|+.+
T Consensus 356 ~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 356 DWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 998765432 45556666677777777653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=278.33 Aligned_cols=283 Identities=23% Similarity=0.354 Sum_probs=124.1
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l 209 (622)
..+++|++|++++|.+++. +. +..+++|++|++++|.+++. + . +..+++ |++|++++|.+.+..+ +..+
T Consensus 63 ~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~-~-----~~~l~~-L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-S-A-----LQNLTN-LRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-G-----GTTCTT-CSEEECTTSCCCCCGG-GTTC
T ss_pred hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-h-H-----HcCCCc-CCEEECcCCcccCchh-hccC
Confidence 3445555555555555432 22 45555555555555554432 1 2 223333 5555555555443222 4445
Q ss_pred CCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccC
Q 037539 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 289 (622)
++|++|++++|......+ .+..+++|++|++++|.+.+. +. ...+++|+.|++++|.+.
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~---------------~~--~~~l~~L~~L~l~~n~l~--- 190 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV---------------TP--IANLTDLYSLSLNYNQIE--- 190 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC---------------GG--GGGCTTCSEEECTTSCCC---
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc---------------hh--hccCCCCCEEEccCCccc---
Confidence 555555555553332222 255555555555555554421 11 112234444444444332
Q ss_pred CCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEE
Q 037539 290 PDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVL 369 (622)
Q Consensus 290 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 369 (622)
..+. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 191 -----------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 191 -----------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp -----------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred -----------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 1111 3444555555555555543322 4445555555555555543222 4555555555
Q ss_pred EccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeec
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNL 449 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 449 (622)
++++|.+ ..++ .+ ..+++|++|++++|++++. + .+ ..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 249 ~l~~n~l-~~~~-~~-~~l~~L~~L~l~~n~l~~~-~-~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 249 EIGTNQI-SDIN-AV-KDLTKLKMLNVGSNQISDI-S-VL-----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp ECCSSCC-CCCG-GG-TTCTTCCEEECCSSCCCCC-G-GG-----GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred ECCCCcc-CCCh-hH-hcCCCcCEEEccCCccCCC-h-hh-----cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 5555555 2222 11 1344455555555444432 1 11 13444444444444444444444444444444444
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
++|++++..| +..+++|++|++++|++
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCccccccC--hhhhhccceeehhhhcc
Confidence 4444443222 34444444444444443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=286.66 Aligned_cols=306 Identities=22% Similarity=0.231 Sum_probs=170.7
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
++++++|++++|.++...+ ..+..+ ++|++|++++|.+++ .....|..+++|++|++++|.+++..|..|
T Consensus 44 l~~l~~l~l~~~~l~~l~~--~~~~~l-~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA--ALLDSF-RQVELLNLNDLQIEE-------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECT--HHHHHC-CCCSEEECTTSCCCE-------ECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCchhhCCh--hHhccc-ccCcEEECCCCcccc-------cChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 3556666666665554433 334455 666666666666553 111233556666666666666665555556
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+++++|++|++++|.++...+.. ++.+++ |++|++++|.+.+..+. +..+++|++|++++|.+++. .+..
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~ 184 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGI-----FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 184 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-----TTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG
T ss_pred cCCCCCCEEECCCCccCcCCHHH-----hcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc
Confidence 66666666666666666444433 233333 66666666666655554 66666666666666666543 2445
Q ss_pred CCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCc
Q 037539 233 LSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~ 310 (622)
+++|++|++++|.+++.. ..++|+.|++++|.+....... +++.|++++|.+.+. .
T Consensus 185 l~~L~~L~l~~n~l~~~~--------------------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA--------------------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp CTTCSEEECCSSCCSEEE--------------------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--G
T ss_pred ccccceeecccccccccC--------------------CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--H
Confidence 566666666666655321 1235666666666655321111 344444444444432 3
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|++|++++|.+ ..+|..+. .+++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~l~~ 319 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQP-QFDR 319 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC-CCCGGGHH-HHTT
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc-eecCcccc-ccCc
Confidence 45566666666666666666556666666666666666666653 344445566666666666666 44555544 4566
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
|++|++++|+++... +. .+++|+.|++++|++.
T Consensus 320 L~~L~L~~N~i~~~~---~~-----~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK---LS-----THHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSEEECCSSCCCCCC---CC-----TTCCCSEEECCSSCEE
T ss_pred CCEEECCCCccceeC---ch-----hhccCCEEEcCCCCcc
Confidence 666666666655332 11 3455555555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=275.71 Aligned_cols=306 Identities=21% Similarity=0.323 Sum_probs=190.3
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
..+++|++|++++|.+... ..+..+ ++|++|++++|++++ ++. +..+++|++|++++|.+++ + +
T Consensus 41 ~~l~~L~~L~l~~~~i~~~----~~~~~~-~~L~~L~l~~n~i~~--~~~-------~~~l~~L~~L~L~~n~i~~-~-~ 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI----QGIEYL-TNLEYLNLNGNQITD--ISP-------LSNLVKLTNLYIGTNKITD-I-S 104 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC----TTGGGC-TTCCEEECCSSCCCC--CGG-------GTTCTTCCEEECCSSCCCC-C-G
T ss_pred hhcccccEEEEeCCccccc----hhhhhc-CCccEEEccCCcccc--chh-------hhcCCcCCEEEccCCcccC-c-h
Confidence 3445555555555555443 124444 556666666665543 111 3455666666666665553 2 2
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccC
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLS 231 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 231 (622)
.+..+++|++|++++|.+.+..+ +..+++ |++|++++|......+.+..+++|++|++++|.+.+..+ +.
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-------~~~l~~-L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-------LANLTK-MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-------GTTCTT-CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred HHcCCCcCCEEECcCCcccCchh-------hccCCc-eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence 45666666666666666654332 223333 666666666544444446666666666666666654332 66
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~ 311 (622)
.+++|++|++++|.+++. +. ...+++|+.|++++|.+.+ . +.
T Consensus 175 ~l~~L~~L~l~~n~l~~~---------------~~--~~~l~~L~~L~l~~n~l~~-------------------~-~~- 216 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDI---------------SP--LASLTSLHYFTAYVNQITD-------------------I-TP- 216 (347)
T ss_dssp GCTTCSEEECTTSCCCCC---------------GG--GGGCTTCCEEECCSSCCCC-------------------C-GG-
T ss_pred cCCCCCEEEccCCccccc---------------cc--ccCCCccceeecccCCCCC-------------------C-ch-
Confidence 667777777777766532 22 2233566666666665541 1 11
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+ ..++. + ..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l-~~~~~-~-~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI-SDISV-L-NNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-CCCGG-G-GGCTTC
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc-CCChh-h-cCCCCC
Confidence 5667778888888887775433 67778888888888887743 4677788888888888887 44432 2 367888
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+.|++++|++++..+..+. .+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIG-----GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHH-----TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhh-----ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888766665554 68888888888888886555 778888888888888775
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=278.51 Aligned_cols=219 Identities=33% Similarity=0.557 Sum_probs=176.3
Q ss_pred cCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhh
Q 037539 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES 387 (622)
Q Consensus 308 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 387 (622)
+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~ 171 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-S 171 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-C
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-h
Confidence 344455566666666666666666666666777777777777777666777777777777777777777667777666 4
Q ss_pred cc-cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 388 LQ-NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 388 l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
++ +|++|++++|++++.+|..+. .++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.++. +..++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~-----~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFA-----NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGG-----GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred hhhcCcEEECcCCeeeccCChHHh-----CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 55 778888888887777776665 454 88888988888888888899999999999999999866555 78899
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMC 535 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C 535 (622)
+|++|+|++|++++.+|..+..+++|++|++++|++++.+|....+..+..+.+.+|+++|+.|.. .|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999999999999999999999888999999999999999997765 45
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=295.97 Aligned_cols=307 Identities=22% Similarity=0.214 Sum_probs=173.4
Q ss_pred CCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh
Q 037539 74 LHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153 (622)
Q Consensus 74 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 153 (622)
+++++.|++++|.+....+ ..+..+ ++|++|++++|.+++ ..| ..|+.+++|++|+|++|.+++..|..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~--~~~~~l-~~L~~L~L~~n~l~~-~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA--ALLDSF-RQVELLNLNDLQIEE-IDT------YAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEESEECT--HHHHHC-CCCSEEECTTSCCCE-ECT------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCCCCcCH--HHHccC-CCCcEEECCCCCCCC-CCh------HHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 3455666666665555444 344445 566666666666553 111 123555666666666666665555556
Q ss_pred cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCC
Q 037539 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQ 232 (622)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 232 (622)
+.+++|++|++++|.+++..+.. |+.+++ |++|++++|.+++..+. ++.+++|++|++++|.+++. .+..
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~ 190 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGI-----FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-----TTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGG
T ss_pred cCCCCCCEEEeeCCCCCCCCHHH-----hccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhh
Confidence 66666666666666666444443 233333 66666666666655554 66666666666666666543 2344
Q ss_pred CCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCC--cccEEeCCCCcCccccCc
Q 037539 233 LSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPD 310 (622)
Q Consensus 233 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~L~~L~ls~n~l~~~~~~ 310 (622)
+++|+.|++++|.+++.. .+++|+.|++++|.+....+.. .|+.|++++|.+.+ +.
T Consensus 191 l~~L~~L~l~~n~l~~l~--------------------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA--------------------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp CTTCSEEECCSSCCSEEE--------------------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CG
T ss_pred hhhhhhhhcccCcccccc--------------------CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--Ch
Confidence 566666666666655321 1235666666666655322221 44444455554443 24
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++ +|..+..+++|++|+|++|.+ ..+|..+. .+++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~-~l~~ 325 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQP-QFDR 325 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC-CCCGGGHH-HHTT
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC-CccCcccc-cCCC
Confidence 55666667777777776666666666666667777777666663 344555566666666666666 45555554 4666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG 432 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 432 (622)
|++|++++|++.+... . .+++|+.|++++|++.+
T Consensus 326 L~~L~L~~N~l~~~~~---~-----~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 326 LENLYLDHNSIVTLKL---S-----THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCCCCCCC---C-----TTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCCCCCcCh---h-----hcCCCCEEEeeCCCCCC
Confidence 6666666666653321 1 35555666666665543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=306.35 Aligned_cols=362 Identities=22% Similarity=0.150 Sum_probs=194.6
Q ss_pred CCCccccEEEeecccCCC----CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc----
Q 037539 130 QHMVSLKSLYLSDSELEG----GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG---- 201 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~---- 201 (622)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+... +.....+|++|++++|.++.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH-HhhCCCceeEEEccCCCCCHHHHH
Confidence 344445555555554442 123334444555555555555443333332211 11111025555555555442
Q ss_pred cCCC-CCCCCCCCEEEeecccCCccCcccc-----CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 202 PIPH-LGGFSSLEAWSLDVNCLNGTIDKSL-----SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 202 ~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
.++. +..+++|++|++++|.+++..+..+ ...++|++|++++|++++... ..++..+.. +++|
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~-~~~L 172 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC----------EPLASVLRA-KPDF 172 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----------HHHHHHHHH-CTTC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH----------HHHHHHHhh-CCCC
Confidence 1122 4455555555555555443222211 123445555555555442110 011222222 2355
Q ss_pred cEEEccCCcCcccCC----------CCcccEEeCCCCcCccc----cCccccCCCCCCEEEccCCcccccC-----CCcc
Q 037539 276 SYLNLSNNHFRGKLP----------DLSLRFDDLSSNLLSGG----LPDCWLHFDRLFILNLANNRLSGKI-----PDSM 336 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~----------~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~-----~~~~ 336 (622)
++|++++|.+.+..+ ...++.|++++|.+++. ++..+..+++|++|++++|++++.. +..+
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 555555555432111 01344444555544432 4556667788888888888776532 2223
Q ss_pred CCCCCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCchhHHhh----cccccEeecCCCcCcccCChh
Q 037539 337 GFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGES----LQNLIVLSLKSNKFHGNIPYQ 408 (622)
Q Consensus 337 ~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~~~ 408 (622)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++.....
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3577888888888877743 45566667888888888887754433333322 257888888888877654333
Q ss_pred hhHhHhhhcCCccEEECCCCcCCccchHHhhc-----ccccceeecCCccccC----CCccccCCCCCCCEEeCCCCccC
Q 037539 409 FENEYKSTLGLVRCLDLSSNKLDGAIPEEIMD-----LVGLIALNLSRNHLTG----PITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 409 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+.. ....+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 333 l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 333 FSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 322 2235778888888888777655554443 5678888888888775 56667777788888888888777
Q ss_pred ccCCcccc-----CCCCCCEEECcCCcCcc
Q 037539 480 GSIPCSLS-----QLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 480 ~~~~~~l~-----~l~~L~~L~ls~N~l~~ 504 (622)
+.....+. ....|+.|++.++.+..
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHHhccCCcchhheeecccccCH
Confidence 54222221 23457777777776654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-34 Score=305.74 Aligned_cols=360 Identities=21% Similarity=0.176 Sum_probs=277.4
Q ss_pred ccccEEEeecccCCCCCchh-hcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC--CCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKF-FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH--LGGF 209 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~--l~~l 209 (622)
++|++|++++|.+++..... +..+++|++|++++|.+++.....+... +..+++ |++|++++|.+.+..+. ...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPA-LAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTT-CCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCC-cCEEeCCCCcCChHHHHHHHHHH
Confidence 57888888888887544333 7889999999999999986544343333 555566 99999999998764332 3334
Q ss_pred C----CCCEEEeecccCCc----cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEcc
Q 037539 210 S----SLEAWSLDVNCLNG----TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281 (622)
Q Consensus 210 ~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 281 (622)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++.... .+...+....++|++|+++
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----------~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ----------LLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH----------HHHHHHTSTTCCCCEEECT
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH----------HHHHHHhcCCCcceEEECC
Confidence 4 79999999999985 4578899999999999999998643210 1122222234579999999
Q ss_pred CCcCcccC----CC-----CcccEEeCCCCcCccccCcccc-----CCCCCCEEEccCCccccc----CCCccCCCCCcc
Q 037539 282 NNHFRGKL----PD-----LSLRFDDLSSNLLSGGLPDCWL-----HFDRLFILNLANNRLSGK----IPDSMGFLNNIW 343 (622)
Q Consensus 282 ~n~l~~~~----~~-----~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~ 343 (622)
+|++.+.. +. .+|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 99988643 21 2899999999998765444443 367999999999999864 456677889999
Q ss_pred EEeeeCCcCCCCC-----CccccCCCCccEEEccCCccccc----CchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 344 TLNLHNNRLTGKL-----PSPLRNFSQLRVLDLEKNAIFGE----IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 344 ~L~Ls~n~i~~~~-----~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
+|++++|.+++.. +..+..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+.+..+..+.....
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 9999999987432 23334689999999999998543 455444 6899999999999998766666655444
Q ss_pred hhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCCccccCC-----CCCCCEEeCCCCccCc----c
Q 037539 415 STLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPITPKIGE-----LTSLDFLDLSRNLFSG----S 481 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~ 481 (622)
...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 4557999999999999865 5667788899999999999998765554443 7899999999999996 6
Q ss_pred CCccccCCCCCCEEECcCCcCccc
Q 037539 482 IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 482 ~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|..+..+++|++|++++|++++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 788888999999999999999753
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=262.21 Aligned_cols=288 Identities=22% Similarity=0.231 Sum_probs=213.5
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSK 235 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 235 (622)
.+++.++++++.++. +|..+ . + +|++|++++|.+.+..+. |.++++|++|++++|.+++..|..|..+++
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~-----~--~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEI-----S--P-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCC-----C--T-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred ccCCEEECCCCCccc-cCCCC-----C--C-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 367777777777663 34331 1 2 488888888888776665 888888888888888888777888888888
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCC
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHF 315 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 315 (622)
|++|++++|+++ .+|..++ ++|++|++++|++. +..+..+..+
T Consensus 104 L~~L~L~~n~l~---------------~l~~~~~---~~L~~L~l~~n~i~-------------------~~~~~~~~~l 146 (332)
T 2ft3_A 104 LQKLYISKNHLV---------------EIPPNLP---SSLVELRIHDNRIR-------------------KVPKGVFSGL 146 (332)
T ss_dssp CCEEECCSSCCC---------------SCCSSCC---TTCCEEECCSSCCC-------------------CCCSGGGSSC
T ss_pred CCEEECCCCcCC---------------ccCcccc---ccCCEEECCCCccC-------------------ccCHhHhCCC
Confidence 888888888876 3333322 35666666665554 3444567788
Q ss_pred CCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 316 DRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+. .+++|++
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~ 221 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYR 221 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCE
Confidence 888888888888853 566677777 88888888888874 454443 6888888988888444444444 6888899
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC------CCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE------LTS 467 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~ 467 (622)
|++++|++.+..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++
T Consensus 222 L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLS-----FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CBCCSSCCCCCCTTGGG-----GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred EECCCCcCCcCChhHhh-----CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 99999888877666655 6888999999999888 77778888999999999999998776666654 367
Q ss_pred CCEEeCCCCccC--ccCCccccCCCCCCEEECcCCc
Q 037539 468 LDFLDLSRNLFS--GSIPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 468 L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~ls~N~ 501 (622)
|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999987 6677888899999999998885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=268.44 Aligned_cols=191 Identities=25% Similarity=0.406 Sum_probs=148.3
Q ss_pred cCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCC-CccEEEccCCcccccCchhHHh
Q 037539 308 LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFS-QLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 308 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
.|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~- 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA- 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-
Confidence 344455666667777777776666666677777777777777777666777777776 777888888777667776665
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
.++ |++|++++|.+.+..|..+. .+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFG-----SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCC-----TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred CCc-ccEEECcCCcccCcCCHHHh-----cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 454 88888888888777766665 688888888888888866554 78889999999999999988999999999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+|++|+|++|++++.+|.. ..+++|+.+++++|+..+..|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999999999888876 888999999999999555444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=260.22 Aligned_cols=295 Identities=21% Similarity=0.244 Sum_probs=169.6
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhcc
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLS 181 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 181 (622)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..|..
T Consensus 33 c~l~~l~~~~~~l~--~ip~~~--------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 97 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK--AVPKEI--------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA----- 97 (332)
T ss_dssp EETTEEECCSSCCS--SCCSCC--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-----
T ss_pred ccCCEEECCCCCcc--ccCCCC--------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-----
Confidence 35677777777665 344322 256777777777777666666777777777777777777666666
Q ss_pred ccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGIS 261 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 261 (622)
++.+++ |++|++++|.++...+.+. ++|++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 98 ~~~l~~-L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------- 163 (332)
T 2ft3_A 98 FSPLRK-LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----------- 163 (332)
T ss_dssp STTCTT-CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG-----------
T ss_pred hhCcCC-CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC-----------
Confidence 333344 7777777777664333333 67777777777777665566777777777777777765211
Q ss_pred cCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCC
Q 037539 262 DSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNN 341 (622)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 341 (622)
..+..+. .+ +|+.|++++|++.+ +|..+. ++|++|++++|++++..+..+..+++
T Consensus 164 -~~~~~~~-~l-~L~~L~l~~n~l~~--------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 164 -FEPGAFD-GL-KLNYLRISEAKLTG--------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp -SCTTSSC-SC-CCSCCBCCSSBCSS--------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred -CCccccc-CC-ccCEEECcCCCCCc--------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 1121111 11 44555555544441 222221 46666777777776666666667777
Q ss_pred ccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH-hhhcCCc
Q 037539 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY-KSTLGLV 420 (622)
Q Consensus 342 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~l~~L 420 (622)
|++|++++|.+.+..+..+..+++|++|++++|.+ ..+|..+. .+++|++|++++|++++..+..+.... ....+.|
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhh-cCccCCEEECCCCCCCccChhHccccccccccccc
Confidence 77777777777666566666777777777777776 46666554 566677777776666654444332100 0012344
Q ss_pred cEEECCCCcCC--ccchHHhhcccccceeecCCc
Q 037539 421 RCLDLSSNKLD--GAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 421 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n 452 (622)
+.|++++|++. +..|..|..+++|+.+++++|
T Consensus 297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cceEeecCcccccccCcccccccchhhhhhcccc
Confidence 45555555443 233344444444444444443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=256.04 Aligned_cols=290 Identities=19% Similarity=0.193 Sum_probs=224.5
Q ss_pred CccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCC
Q 037539 156 MCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLS 234 (622)
Q Consensus 156 l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 234 (622)
..+++.++++++.++. .|..+ . + ++++|++++|.+++..+. |+.+++|++|++++|.+++..|..|..++
T Consensus 30 ~c~l~~l~~~~~~l~~-lp~~~-----~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEK-VPKDL-----P--P-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCS-CCCSC-----C--T-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCCeEEEecCCCccc-cCccC-----C--C-CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4588999999998874 44332 1 2 499999999999987776 99999999999999999988888999999
Q ss_pred CCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccC
Q 037539 235 KLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLH 314 (622)
Q Consensus 235 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 314 (622)
+|++|++++|+++. +|..++ ++|++|++++|.+. +..+..+..
T Consensus 101 ~L~~L~Ls~n~l~~---------------l~~~~~---~~L~~L~l~~n~l~-------------------~~~~~~~~~ 143 (330)
T 1xku_A 101 KLERLYLSKNQLKE---------------LPEKMP---KTLQELRVHENEIT-------------------KVRKSVFNG 143 (330)
T ss_dssp TCCEEECCSSCCSB---------------CCSSCC---TTCCEEECCSSCCC-------------------BBCHHHHTT
T ss_pred CCCEEECCCCcCCc---------------cChhhc---ccccEEECCCCccc-------------------ccCHhHhcC
Confidence 99999999998873 333322 35666666665554 455566788
Q ss_pred CCCCCEEEccCCcccc--cCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 315 FDRLFILNLANNRLSG--KIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
+++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+. .+++|+
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 219 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLA 219 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCC
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCC
Confidence 8999999999998863 66677888899999999999887 4454443 7899999999988554455544 788899
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC------CC
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE------LT 466 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~ 466 (622)
+|++++|.+++..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+
T Consensus 220 ~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLA-----NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp EEECCSSCCCEECTTTGG-----GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred EEECCCCcCceeChhhcc-----CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 999999988877765555 6888999999999888 77778888899999999999988776666653 37
Q ss_pred CCCEEeCCCCccCc--cCCccccCCCCCCEEECcCCc
Q 037539 467 SLDFLDLSRNLFSG--SIPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~N~ 501 (622)
.|+.|++++|++.. ..|..|..++.++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78899999998864 566778888889999998884
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=255.06 Aligned_cols=284 Identities=21% Similarity=0.187 Sum_probs=164.4
Q ss_pred CCcEEeCCCCCCCCC-----CCccEEEcCCcccCCC-CcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEE
Q 037539 34 RLQELVLGLGKFFET-----SNINTFFLNTVSVTKS-SDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETL 107 (622)
Q Consensus 34 ~L~~L~L~~n~i~~~-----~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L 107 (622)
+++.++++++.++.. +.+++|++++|.+++. +. .+.++++|++|++++|.+++..| ..+..+ ++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG---DFKNLKNLHTLILINNKISKISP--GAFAPL-VKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEECCSSCCCCBCT--TTTTTC-TTCCEE
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh---hhccCCCCCEEECCCCcCCeeCH--HHhcCC-CCCCEE
Confidence 567777777766554 5677777777777766 44 56677777777777777776656 566666 777777
Q ss_pred EccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC--cCchhhhhcccccc
Q 037539 108 DLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG--QYSQVIQNLSFGCV 185 (622)
Q Consensus 108 ~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~l~l~~~ 185 (622)
++++|+++ .+|..+ .++|++|++++|.+++..+..|.++++|+.|++++|.+.. ..+.. +..+
T Consensus 106 ~Ls~n~l~--~l~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l 170 (330)
T 1xku_A 106 YLSKNQLK--ELPEKM--------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGM 170 (330)
T ss_dssp ECCSSCCS--BCCSSC--------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----GGGC
T ss_pred ECCCCcCC--ccChhh--------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-----ccCC
Confidence 77777766 333322 1567777777777776666667777777777777776653 34444 3333
Q ss_pred CCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCc
Q 037539 186 VNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIP 265 (622)
Q Consensus 186 ~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 265 (622)
++ |++|++++|.++.....+. ++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 171 ~~-L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------- 231 (330)
T 1xku_A 171 KK-LSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---------------- 231 (330)
T ss_dssp TT-CCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE----------------
T ss_pred CC-cCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee----------------
Confidence 33 7777777776664332222 5666666666666666566666666666666666665422
Q ss_pred hhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEE
Q 037539 266 DWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTL 345 (622)
Q Consensus 266 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 345 (622)
.+..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 232 ------------------------------------------~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 232 ------------------------------------------DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp ------------------------------------------CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred ------------------------------------------ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence 1223334444555555555544 344444455555555
Q ss_pred eeeCCcCCCCCCccccC------CCCccEEEccCCcccc-cCchhHHhhcccccEeecCCCc
Q 037539 346 NLHNNRLTGKLPSPLRN------FSQLRVLDLEKNAIFG-EIPTWIGESLQNLIVLSLKSNK 400 (622)
Q Consensus 346 ~Ls~n~i~~~~~~~l~~------l~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~L~~n~ 400 (622)
++++|++++..+..|.. .+.|+.|++++|.+.. .++...+..+.+++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55555555443333322 2556666666666521 2333333355666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-31 Score=290.55 Aligned_cols=387 Identities=14% Similarity=0.087 Sum_probs=238.1
Q ss_pred CCCCCCEEEccCCCCCCCCCCcchhccccCc-ccEEEccCCC-CCCCCCchhhhcccccCCCccccEEEeecccCCCC--
Q 037539 73 KLHSLKSLVLFSCALPPVNPSFIWHFNLSTS-IETLDLSDNN-LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGG-- 148 (622)
Q Consensus 73 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-- 148 (622)
.+++|++|+|++|.+++..+ ..+....+. |++|++++|. ++. ..+. .....+++|++|++++|.+++.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~~L~~L~L~~~~~~~~----~~l~--~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDL--DRLAKARADDLETLKLDKCSGFTT----DGLL--SIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHH--HHHHHHHGGGCCEEEEESCEEEEH----HHHH--HHHHHCTTCSEEECTTCEEECCCS
T ss_pred hCCCCCeEEeeccEecHHHH--HHHHHhccccCcEEECcCCCCcCH----HHHH--HHHhhCCCCCEEECccccccCcch
Confidence 56777777777776654433 333331133 7777777765 211 0110 1113567777777777766554
Q ss_pred --CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCC---
Q 037539 149 --IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLN--- 223 (622)
Q Consensus 149 --~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~--- 223 (622)
++..+..+++|++|++++|.+++.....+..+ +..+++ |++|++++|.+.+....+..+++|++|+++.....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~-L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRS-LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTT-CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-HhhCCC-CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch
Confidence 22334556777777777777664433333333 344455 77777777766653322666677777777643222
Q ss_pred ccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCc
Q 037539 224 GTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNL 303 (622)
Q Consensus 224 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~ 303 (622)
...+..+..+++|+.|+++++... .+|..+. .+++|++|++++|.+.
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~---------------~l~~~~~-~~~~L~~L~Ls~~~l~----------------- 306 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPN---------------EMPILFP-FAAQIRKLDLLYALLE----------------- 306 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTT---------------TGGGGGG-GGGGCCEEEETTCCCC-----------------
T ss_pred HHHHHHhhccccccccCccccchh---------------HHHHHHh-hcCCCcEEecCCCcCC-----------------
Confidence 223345556667777766664322 3333322 2346666666665543
Q ss_pred Cccc-cCccccCCCCCCEEEccCCcccc-cCCCccCCCCCccEEeeeC-----------CcCCCC-CCccccCCCCccEE
Q 037539 304 LSGG-LPDCWLHFDRLFILNLANNRLSG-KIPDSMGFLNNIWTLNLHN-----------NRLTGK-LPSPLRNFSQLRVL 369 (622)
Q Consensus 304 l~~~-~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~-----------n~i~~~-~~~~l~~l~~L~~L 369 (622)
+. ....+..+++|++|+++ +.+++ ..+..+..+++|++|++++ +.+++. .......+++|++|
T Consensus 307 --~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 307 --TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp --HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred --HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 22 22345778899999998 44432 2333345678899999983 445432 12224468899999
Q ss_pred EccCCcccccCchhHHhhcccccEeecC----CCcCcccCChhhhHhHhhhcCCccEEECCCCc--CCccchHHhhc-cc
Q 037539 370 DLEKNAIFGEIPTWIGESLQNLIVLSLK----SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNK--LDGAIPEEIMD-LV 442 (622)
Q Consensus 370 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~----~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~ 442 (622)
+++.|.+.+..+..+...+++|+.|+++ .|.+++.+...-.......+++|+.|++++|. +++..+..+.. ++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 9988888776666776568899999996 56666543222122223468999999997654 66655555544 88
Q ss_pred ccceeecCCccccCC-CccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcCCcCccc
Q 037539 443 GLIALNLSRNHLTGP-ITPKIGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+|++|++++|.+++. .+..+.++++|++|+|++|.+++. ++.....+++|++|++++|+++..
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 899999999998753 344567889999999999998754 344456788999999999997643
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=247.45 Aligned_cols=261 Identities=20% Similarity=0.236 Sum_probs=175.9
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
|++|++++|.+++..+. +.++++|++|++++|.+++..+..|.++++|++|++++|+++ .+|..
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------~~~~~ 118 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---------------NLSSS 118 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---------------SCCHH
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---------------cCCHh
Confidence 66666666666555443 666666666666666666655666666677777777776665 34444
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC--ccccCCCCCCEEEccCC-cccccCCCccCCCCCccE
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP--DCWLHFDRLFILNLANN-RLSGKIPDSMGFLNNIWT 344 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~ 344 (622)
.+..+++|++|++++|++. .++ ..+..+++|++|++++| .+++..+..+..+++|++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~--------------------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK--------------------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS--------------------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred HhCCCccCCEEECCCCCCc--------------------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 3444456666666666554 222 35678889999999998 577677778889999999
Q ss_pred EeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 345 LNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 345 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
|++++|.+.+..|..+..+++|++|++++|.+ +.+|...+..+++|++|++++|.+++..+..+.. ......++.++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~~~~l~~l~ 255 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFT 255 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccccc--ccccchhhccc
Confidence 99999999888888999999999999999998 6777776666889999999999888655443321 11234445555
Q ss_pred CCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 425 LSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 425 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++++.+.+ +.+. .+|+.+..+++|+.|++++|+++...+..|..+++|++|++++|++.|
T Consensus 256 L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 256 FRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 55444432 1111 245556667777777777777773333335777788888888888877
Q ss_pred cCC
Q 037539 505 KIP 507 (622)
Q Consensus 505 ~~p 507 (622)
.+|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 766
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=252.37 Aligned_cols=191 Identities=23% Similarity=0.210 Sum_probs=138.6
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.|.++++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 34445555555555555554444455556666666666666654445556666666666666644335555544445666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCE
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF 470 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 470 (622)
|++|++++|+++.. |. + ..+++|+.|+|++|++++..|..|.++++|+.|++++|.+++..+..|.++++|+.
T Consensus 187 L~~L~L~~n~l~~~-~~-~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 187 LRYLNLAMCNLREI-PN-L-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp CCEEECTTSCCSSC-CC-C-----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred cCeecCCCCcCccc-cc-c-----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 67777776666632 21 2 26788888999999888787888999999999999999999888889999999999
Q ss_pred EeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|+|++|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999988888889999999999999999988654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=254.40 Aligned_cols=192 Identities=22% Similarity=0.164 Sum_probs=143.4
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
..|.++++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 34455556666666666666555555666666666666666666555556666677777777664433556555555677
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
+|++|++++|++++. |. +. .+++|+.|+|++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|+
T Consensus 197 ~L~~L~L~~n~l~~~-~~-~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM-PN-LT-----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TCCEEECTTSCCSSC-CC-CT-----TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCccccc-cc-cc-----ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 777777777777643 21 22 678899999999999888888999999999999999999988888899999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
.|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999988888888999999999999999988654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-30 Score=281.70 Aligned_cols=397 Identities=14% Similarity=0.035 Sum_probs=218.0
Q ss_pred CCccEEEcCCcccCCC-CcchHhhcC-CCC-CCEEEccCCC-CCCCCCCcchh-ccccCcccEEEccCCCCCCCCCchhh
Q 037539 49 SNINTFFLNTVSVTKS-SDWFQVVAK-LHS-LKSLVLFSCA-LPPVNPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWL 123 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~l~~-l~~-L~~L~Ls~n~-l~~~~~~~~~l-~~l~~~L~~L~Ls~n~l~~~~~~~~~ 123 (622)
++|++|+|++|.+++. .. .+.. +++ |++|+|++|. ++.... ..+ ..+ ++|++|+|++|.+++ ....++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~L~~~~~~~~~~l--~~~~~~~-~~L~~L~L~~~~~~~-~~~~~l 184 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTDGL--LSIVTHC-RKIKTLLMEESSFSE-KDGKWL 184 (592)
T ss_dssp TTCCEEEEESCBCCHHHHH---HHHHHHGGGCCEEEEESCEEEEHHHH--HHHHHHC-TTCSEEECTTCEEEC-CCSHHH
T ss_pred CCCCeEEeeccEecHHHHH---HHHHhccccCcEEECcCCCCcCHHHH--HHHHhhC-CCCCEEECccccccC-cchhHH
Confidence 6777777777766554 32 3333 333 7777777765 111000 111 244 777777777776654 222222
Q ss_pred hcccccCCCccccEEEeecccCCC----CCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcc
Q 037539 124 LNLKAFQHMVSLKSLYLSDSELEG----GIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDF 199 (622)
Q Consensus 124 ~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~ 199 (622)
.. .+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+ .+..+.. +++ |++|+++++..
T Consensus 185 ~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~-----~~~-L~~L~l~~~~~ 255 (592)
T 3ogk_B 185 HE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA-----AAN-LEEFCGGSLNE 255 (592)
T ss_dssp HH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH-----CTT-CCEEEECBCCC
T ss_pred HH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh-----hhH-HHhhccccccc
Confidence 11 12456777777777777662 223344566777777777776664 4444333 333 77777765322
Q ss_pred c---ccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCC
Q 037539 200 T---GPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKL 275 (622)
Q Consensus 200 ~---~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 275 (622)
. ..... +..+++|+.|+++++... .++..+..+++|++|++++|.+++. ....+...+++|
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~--------------~~~~~~~~~~~L 320 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE--------------DHCTLIQKCPNL 320 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH--------------HHHHHHTTCTTC
T ss_pred ccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH--------------HHHHHHHhCcCC
Confidence 2 11112 566677777777765332 4555666677777777777775432 122223445677
Q ss_pred cEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccC-----------CcccccCC-CccCCCCCcc
Q 037539 276 SYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN-----------NRLSGKIP-DSMGFLNNIW 343 (622)
Q Consensus 276 ~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~~~-~~~~~l~~L~ 343 (622)
+.|+++ +.+.+ +.++..+..+++|++|++++ +.+++... .....+++|+
T Consensus 321 ~~L~L~-~~~~~------------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 321 EVLETR-NVIGD------------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CEEEEE-GGGHH------------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CEEecc-CccCH------------------HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 777777 33221 11222334556666666662 34443211 1123456677
Q ss_pred EEeeeCCcCCCCCCccccC-CCCccEEEcc----CCccccc-----CchhHHhhcccccEeecCCCc--CcccCChhhhH
Q 037539 344 TLNLHNNRLTGKLPSPLRN-FSQLRVLDLE----KNAIFGE-----IPTWIGESLQNLIVLSLKSNK--FHGNIPYQFEN 411 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~ 411 (622)
+|+++.+.+++..+..+.. +++|++|+++ .|.+.+. ++ .+..++++|+.|++++|. +++..+..+.
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~- 459 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIG- 459 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHH-
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccHHHHHHHH-
Confidence 7777666665544444443 6667777775 4444221 11 123356777777776543 4433222222
Q ss_pred hHhhhcCCccEEECCCCcCCcc-chHHhhcccccceeecCCccccCCC-ccccCCCCCCCEEeCCCCccCccCCccc-cC
Q 037539 412 EYKSTLGLVRCLDLSSNKLDGA-IPEEIMDLVGLIALNLSRNHLTGPI-TPKIGELTSLDFLDLSRNLFSGSIPCSL-SQ 488 (622)
Q Consensus 412 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~ 488 (622)
..+++|+.|++++|++++. ++..+..+++|++|++++|.+++.. +..+..+++|++|+|++|++++.....+ ..
T Consensus 460 ---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 460 ---QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp ---HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred ---HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 2467777777777777652 3444566777777777777765432 2334567778888888887775533333 34
Q ss_pred CCCCCEEECcCC
Q 037539 489 LSGLGVLDLSYN 500 (622)
Q Consensus 489 l~~L~~L~ls~N 500 (622)
+|.+....+..+
T Consensus 537 ~p~l~~~~~~~~ 548 (592)
T 3ogk_B 537 RPYWNIELIPSR 548 (592)
T ss_dssp CTTEEEEEECCC
T ss_pred CCCcEEEEecCc
Confidence 566655555444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=243.54 Aligned_cols=255 Identities=24% Similarity=0.259 Sum_probs=165.1
Q ss_pred cCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhH
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~ 268 (622)
-+.++.+++.++.....+. ++|++|++++|.++...+..|..+++|++|++++|.++... ..+..+
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~~~~ 74 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG------------CCSQSD 74 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE------------EEEHHH
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc------------Cccccc
Confidence 4567777777664433332 57888888888887555555777888888888888775321 223333
Q ss_pred HhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCC-CccCCCCCccEEee
Q 037539 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP-DSMGFLNNIWTLNL 347 (622)
Q Consensus 269 ~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L 347 (622)
.. +++|++|++++|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus 75 ~~-~~~L~~L~Ls~n~i~--------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 75 FG-TTSLKYLDLSFNGVI--------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp HS-CSCCCEEECCSCSEE--------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred cc-ccccCEEECCCCccc--------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence 33 245666655555544 233445556666666666666654333 34555555555555
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcc-cCChhhhHhHhhhcCCccEEECC
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG-NIPYQFENEYKSTLGLVRCLDLS 426 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~l~~L~~L~L~ 426 (622)
++|.+.+..+..+..+++|++|++++|.+ .+ ..|..+. .+++|++|+++
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------------~~~~~~~~~~-----~l~~L~~L~Ls 183 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSF-------------------------QENFLPDIFT-----ELRNLTFLDLS 183 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEE-------------------------GGGEECSCCT-----TCTTCCEEECT
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCcc-------------------------ccccchhHHh-----hCcCCCEEECC
Confidence 55555544444455555555555555544 33 2233332 46667777777
Q ss_pred CCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC-CCCEEECcCCcCccc
Q 037539 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-GLGVLDLSYNNLSGK 505 (622)
Q Consensus 427 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l~~~ 505 (622)
+|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++.|.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7777766677777788888888888888876677788888888888888888888888888884 899999999998877
Q ss_pred CCC
Q 037539 506 IPS 508 (622)
Q Consensus 506 ~p~ 508 (622)
++.
T Consensus 264 c~~ 266 (306)
T 2z66_A 264 CEH 266 (306)
T ss_dssp GGG
T ss_pred cCh
Confidence 553
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-28 Score=239.99 Aligned_cols=276 Identities=21% Similarity=0.234 Sum_probs=198.4
Q ss_pred CcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc--CccccCCCCC
Q 037539 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT--IDKSLSQLSK 235 (622)
Q Consensus 159 L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~ 235 (622)
-+.++.+++.++. +|..+ . + +|++|++++|.++...+. |+.+++|++|++++|.++.. .+..+..+++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~-----~--~-~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI-----P--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC-----C--T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CCEEEcCCCCccc-CCCCC-----C--C-CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 3678899888875 44331 1 2 599999999999976666 89999999999999999843 3567778999
Q ss_pred CCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC-ccccC
Q 037539 236 LESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP-DCWLH 314 (622)
Q Consensus 236 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~ 314 (622)
|++|++++|.++. +|..+.. +++|++|++++|++.+ ..+ ..+..
T Consensus 80 L~~L~Ls~n~i~~---------------l~~~~~~-l~~L~~L~l~~n~l~~-------------------~~~~~~~~~ 124 (306)
T 2z66_A 80 LKYLDLSFNGVIT---------------MSSNFLG-LEQLEHLDFQHSNLKQ-------------------MSEFSVFLS 124 (306)
T ss_dssp CCEEECCSCSEEE---------------EEEEEET-CTTCCEEECTTSEEES-------------------STTTTTTTT
T ss_pred cCEEECCCCcccc---------------ChhhcCC-CCCCCEEECCCCcccc-------------------cccchhhhh
Confidence 9999999999873 3444333 4688888888887662 222 46788
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCC-CCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG-KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+. .+++|++
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~ 203 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCE
Confidence 9999999999999998888899999999999999999985 5778888889999999998888444344433 4555555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCC-CCCEEe
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT-SLDFLD 472 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ 472 (622)
|++++|+++ +..+..+..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 204 L~L~~N~l~-----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 204 LNMSHNNFF-----------------------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp EECTTSCCS-----------------------------BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred EECCCCccC-----------------------------ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 555555554 33334455666677777777777666666677663 777777
Q ss_pred CCCCccCccCC--ccccCCCCCCEEECcCCcCcccCCC
Q 037539 473 LSRNLFSGSIP--CSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 473 Ls~n~l~~~~~--~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|++|++++..+ .....+...+.+.+..+.+.|..|.
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 77777764421 1112223344455556666666554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=244.88 Aligned_cols=214 Identities=20% Similarity=0.176 Sum_probs=133.1
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCC-ccccCCCCccEEEccCCcccccCchhHHhhcc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLP-SPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 389 (622)
.|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|...+.++...+..++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 34445555555555555554333335555555555555555553222 24555555555555555311333332223455
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccC---CCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIG---ELT 466 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~ 466 (622)
+|++|++++|.+.+..|..+. .+++|++|++++|.+.......+..+++|++|++++|.+++..+..+. ..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLK-----SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTT-----TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCEEECCCCCcCccCHHHHh-----ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 666666666666555554444 566666666666666533333344567777777777777655444332 366
Q ss_pred CCCEEeCCCCccCc----cCCccccCCCCCCEEECcCCcCcccCCCC--CcCCccCcccccCCcCCCCCC
Q 037539 467 SLDFLDLSRNLFSG----SIPCSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~ 530 (622)
.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ..+..++.+.+.+|++.|+|+
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 78888888888875 36778899999999999999999 66764 467888899999999999875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=236.94 Aligned_cols=211 Identities=22% Similarity=0.175 Sum_probs=180.8
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCCCCccccCCCCccEEEc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGKLPSPLRNFSQLRVLDL 371 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L 371 (622)
.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44455555555555666778899999999999999998888899999999999999997 77666888999999999999
Q ss_pred cCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 372 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
++|.+.+..+..+ ..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++
T Consensus 113 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 113 DRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp TTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhc-----cCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 9999954444444 4799999999999999876666555 789999999999999977777799999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++..
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999888999999999999999999999877778999999999999999999887654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=242.95 Aligned_cols=250 Identities=25% Similarity=0.247 Sum_probs=209.0
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 45555556666666677889999999999999999998888899999999999999999997777789999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..++...+..+++|++|++++|+..+.+ +..+. .+++|++|++++|+++ .+| .+..+++|++|+|++
T Consensus 145 ~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 145 NNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp SCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred CCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhh-----cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence 9999 5676666668999999999996544333 33444 7999999999999998 455 588999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|.+++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++|+++...+.. ..+..++.+.+.+||+.|+|.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999888999999999999999999999999999999999999999999999554433 356788888999999999984
Q ss_pred CC-----------------CCCCCCCCCCCCCCCCCC
Q 037539 531 LA-----------------NMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 531 ~~-----------------~~C~~~~~~~~~~~~~~~ 550 (622)
.. ..|..|...+|.......
T Consensus 297 l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~ 333 (440)
T 3zyj_A 297 ILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELD 333 (440)
T ss_dssp THHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC---
T ss_pred chHHHHHHHhccccCCccccCCCChhHhcCccHhHhh
Confidence 21 358778777766554433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=243.31 Aligned_cols=249 Identities=25% Similarity=0.239 Sum_probs=210.3
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45566666666666777889999999999999999998888999999999999999999997777789999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..++...+..+++|++|++++|+..+.+ +..+. .+++|+.|++++|++++ +| .+..+++|++|+|++
T Consensus 156 ~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-----~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 156 NNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSG 227 (452)
T ss_dssp SCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-----TCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTT
T ss_pred CCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-----CCCCCCEEECCCCcccc-cc-cccccccccEEECcC
Confidence 9999 6677766668999999999995544333 33444 79999999999999985 44 588999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+.. ..+..+..+.+.+||+.|+|.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999888999999999999999999999999999999999999999999998544432 346778888999999999986
Q ss_pred CC-----------------CCCCCCCCCCCCCCCCC
Q 037539 531 LA-----------------NMCLDEESTPGPGTDDD 549 (622)
Q Consensus 531 ~~-----------------~~C~~~~~~~~~~~~~~ 549 (622)
.. ..|..|...+|......
T Consensus 308 ~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~ 343 (452)
T 3zyi_A 308 ILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343 (452)
T ss_dssp THHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSC
T ss_pred chHHHHHHHHhCccCCccCcEeCCchHhccchhhcc
Confidence 32 35777777766554443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=234.26 Aligned_cols=186 Identities=26% Similarity=0.288 Sum_probs=136.1
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcccc---------CCCCccEEEccCCccccc
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR---------NFSQLRVLDLEKNAIFGE 379 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~---------~l~~L~~L~L~~n~i~~~ 379 (622)
|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+ ..
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~ 197 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RS 197 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CC
T ss_pred hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-Cc
Confidence 344445555555555555555 4455555555666666665555545554443 477888888888877 47
Q ss_pred CchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCc
Q 037539 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPIT 459 (622)
Q Consensus 380 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 459 (622)
+|..+. .+++|++|++++|++++. |..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|
T Consensus 198 lp~~l~-~l~~L~~L~L~~N~l~~l-~~~l~-----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 198 LPASIA-NLQNLKSLKIRNSPLSAL-GPAIH-----HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCGGGG-GCTTCCEEEEESSCCCCC-CGGGG-----GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred chHhhc-CCCCCCEEEccCCCCCcC-chhhc-----cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 776655 677888888888887753 33343 67888888888888888888888888888889998888888888
Q ss_pred cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 460 PKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 460 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
..+..+++|++|+|++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888899999999998888888888889999998888877664
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-29 Score=274.30 Aligned_cols=382 Identities=16% Similarity=0.076 Sum_probs=201.8
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhc-cccCcccEEEccCC-CCCCCCCchhhhcccccCCCccccEEEeecccCCCCC
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHF-NLSTSIETLDLSDN-NLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
..+++|++|+|++|.+++..+ ..+. .+ ++|++|++++| .++...++. .+..+++|++|++++|.+++..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~--~~l~~~~-~~L~~L~L~~~~~~~~~~l~~------~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL--ELIAKSF-KNFKVLVLSSCEGFSTDGLAA------IAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH--HHHHHHC-TTCCEEEEESCEEEEHHHHHH------HHHHCTTCCEEECTTCEEECCC
T ss_pred HhCCCCCeEEeeCcEEcHHHH--HHHHHhC-CCCcEEeCCCcCCCCHHHHHH------HHHhCCCCCEEeCcCCccCCcc
Confidence 345666666666666554333 3333 34 66666666666 332200111 1134566666666666655444
Q ss_pred chhhc----CCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeeccc---
Q 037539 150 PKFFG----NMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNC--- 221 (622)
Q Consensus 150 ~~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~--- 221 (622)
+..+. .+++|+.|++++|. .......+..+ ...+++ |++|++++|...+..+. +..+++|++|+++.+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l-~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL-VTRCPN-LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH-HHHCTT-CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH-HHhCCC-CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence 33332 44566666666654 21222222222 223344 66666666522112333 4555666666643332
Q ss_pred ----CCccCccccCCCCCCCEE-EccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccE
Q 037539 222 ----LNGTIDKSLSQLSKLESL-SLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF 296 (622)
Q Consensus 222 ----l~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~ 296 (622)
+.+ ++..+.++++|+.| .+.+... +.++..+. .+++|++|++++|.+.
T Consensus 250 ~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~---------------~~l~~~~~-~~~~L~~L~L~~~~l~---------- 302 (594)
T 2p1m_B 250 RPDVYSG-LSVALSGCKELRCLSGFWDAVP---------------AYLPAVYS-VCSRLTTLNLSYATVQ---------- 302 (594)
T ss_dssp CHHHHHH-HHHHHHTCTTCCEEECCBTCCG---------------GGGGGGHH-HHTTCCEEECTTCCCC----------
T ss_pred chhhHHH-HHHHHhcCCCcccccCCcccch---------------hhHHHHHH-hhCCCCEEEccCCCCC----------
Confidence 222 22245555666665 2222111 12222222 2245666666555533
Q ss_pred EeCCCCcCccc-cCccccCCCCCCEEEccCCcccccC-CCccCCCCCccEEeeeC---------CcCCCCCCccc-cCCC
Q 037539 297 DDLSSNLLSGG-LPDCWLHFDRLFILNLANNRLSGKI-PDSMGFLNNIWTLNLHN---------NRLTGKLPSPL-RNFS 364 (622)
Q Consensus 297 L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~l-~~l~ 364 (622)
+. ....+..+++|++|++++| +++.. +.....+++|++|++++ +.+++.....+ ..++
T Consensus 303 ---------~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 303 ---------SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp ---------HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 21 2223456777888888777 43221 12223467788887744 23332211122 2467
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecC--C----CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK--S----NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
+|++|++..|.+.+.....+...+++|+.|+++ + +.+++.....-.......+++|+.|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 788887777777555555555457788888887 3 34442221111112233677888888876 6665555555
Q ss_pred hc-ccccceeecCCccccCCCcccc-CCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEECcCCcCc
Q 037539 439 MD-LVGLIALNLSRNHLTGPITPKI-GELTSLDFLDLSRNLFSGSIPC-SLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 439 ~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~N~l~ 503 (622)
.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 54 7778888888888765544444 5578888888888887544333 3345778888888888774
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=226.90 Aligned_cols=204 Identities=24% Similarity=0.230 Sum_probs=96.1
Q ss_pred ccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-ccccCCC-CCCCC
Q 037539 133 VSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-FTGPIPH-LGGFS 210 (622)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-~~~~~~~-l~~l~ 210 (622)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+ ..+++ |++|++++|. +....+. +..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~-L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLAL-LEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTT-CCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-----CCccC-CCEEeCCCCCCccccCHHHhcCCc
Confidence 455555555555554444455555555555555555554444442 22223 5555555554 4433333 55555
Q ss_pred CCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCC
Q 037539 211 SLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLP 290 (622)
Q Consensus 211 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 290 (622)
+|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|++.
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCCCccEEECCCCccc----
Confidence 55555555555555445555555555555555555441 11111111122333333322222
Q ss_pred CCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEE
Q 037539 291 DLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLD 370 (622)
Q Consensus 291 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 370 (622)
+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 167 ---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 167 ---------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp ---------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred ---------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 11122334444555555555555544444555555555555555555543334444555555555
Q ss_pred ccCCcc
Q 037539 371 LEKNAI 376 (622)
Q Consensus 371 L~~n~i 376 (622)
+++|.+
T Consensus 232 l~~N~~ 237 (285)
T 1ozn_A 232 LNDNPW 237 (285)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 555554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=230.34 Aligned_cols=233 Identities=21% Similarity=0.226 Sum_probs=156.9
Q ss_pred CcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 188 SLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 188 ~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
.+++|++++|.+....+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------------~lp~~ 145 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------ALPAS 145 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------------CCCGG
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------------cCcHH
Confidence 388999999888844444778888899999888888 67778888888888888888876 45555
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEee
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL 347 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 347 (622)
+... ++|++|++++|++.+.+|. .+.. . ..+..+..+++|++|++
T Consensus 146 l~~l-~~L~~L~L~~n~~~~~~p~-------------------~~~~------~---------~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 146 IASL-NRLRELSIRACPELTELPE-------------------PLAS------T---------DASGEHQGLVNLQSLRL 190 (328)
T ss_dssp GGGC-TTCCEEEEEEETTCCCCCS-------------------CSEE------E---------C-CCCEEESTTCCEEEE
T ss_pred HhcC-cCCCEEECCCCCCccccCh-------------------hHhh------c---------cchhhhccCCCCCEEEC
Confidence 4443 4677777766655544432 1110 0 00111233566666666
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCC
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 427 (622)
++|.++ .+|..+..+++|++|++++|.+ ..+|..+. .+++|++|++++|++.+.+|..+. .+++|+.|++++
T Consensus 191 ~~n~l~-~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~-----~l~~L~~L~L~~ 262 (328)
T 4fcg_A 191 EWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIH-HLPKLEELDLRGCTALRNYPPIFG-----GRAPLKRLILKD 262 (328)
T ss_dssp EEECCC-CCCGGGGGCTTCCEEEEESSCC-CCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTT-----CCCCCCEEECTT
T ss_pred cCCCcC-cchHhhcCCCCCCEEEccCCCC-CcCchhhc-cCCCCCEEECcCCcchhhhHHHhc-----CCCCCCEEECCC
Confidence 666665 5555566666666666666666 34554443 566666666666666666665554 577777777777
Q ss_pred CcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 428 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
|.+.+.+|..+.++++|++|+|++|++.+.+|+.++.+++|+.+++..+.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777777778888888888888877788888888888888887776554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-28 Score=242.52 Aligned_cols=180 Identities=24% Similarity=0.179 Sum_probs=132.3
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
++|++|++++|++++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+...+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 46666666666666544332 466778888888877666667777888888888888875555555544578888888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+.. .+++|++|++++|++++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 176 L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 176 LQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CTTSCCCEEECCC-------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CCCCcCccccccc-------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 8888887552221 37788888888888884 4445888889999999999888 5677788889999999999
Q ss_pred CccC-ccCCccccCCCCCCEEECcCC-cCcccCC
Q 037539 476 NLFS-GSIPCSLSQLSGLGVLDLSYN-NLSGKIP 507 (622)
Q Consensus 476 n~l~-~~~~~~l~~l~~L~~L~ls~N-~l~~~~p 507 (622)
|++. +..|..+..++.|+.+++++| .+.+..|
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9988 677788888888888888744 3444444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=235.11 Aligned_cols=262 Identities=20% Similarity=0.179 Sum_probs=176.9
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhh-cccccCCCccccEEEeecccCCCCC
Q 037539 71 VAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLL-NLKAFQHMVSLKSLYLSDSELEGGI 149 (622)
Q Consensus 71 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~ 149 (622)
+...++|++|++++|.+ ..| ..+... |++|++++|.++...+|..+. ..-.+..+++|++|++++|.+++..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p--~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADL--GQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCC--HHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc--ccH--HHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 45567788899999988 455 444443 888899999886545655441 1112225789999999999998888
Q ss_pred chhh--cCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc-
Q 037539 150 PKFF--GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT- 225 (622)
Q Consensus 150 ~~~l--~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~- 225 (622)
|..+ ..+++|++|++++|++++. |..+..+.....+ +|++|++++|.+.+..+. ++.+++|++|++++|.+.+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 8876 8899999999999999877 7765554111113 499999999998877766 88888999999998887654
Q ss_pred -Ccccc--CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCC
Q 037539 226 -IDKSL--SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSN 302 (622)
Q Consensus 226 -~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n 302 (622)
.+..+ ..+++|++|++++|++++.. .++..++..+++|++|++++|++.+..|
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 245 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPS------------GVCSALAAARVQLQGLDLSHNSLRDAAG------------ 245 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHH------------HHHHHHHHTTCCCSEEECTTSCCCSSCC------------
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchH------------HHHHHHHhcCCCCCEEECCCCcCCcccc------------
Confidence 23334 77888888888888876432 3344444455667777776666653221
Q ss_pred cCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
...+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 246 ------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 246 ------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred ------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 123344566777777777666 4454443 5666666666666643 43 66666666666666665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-29 Score=274.73 Aligned_cols=420 Identities=16% Similarity=0.098 Sum_probs=264.9
Q ss_pred ccCcCCcEEeCCCCCCC-----------------------CCCCccEEEcCCcccCCC-CcchHhhc-CCCCCCEEEccC
Q 037539 30 VNIERLQELVLGLGKFF-----------------------ETSNINTFFLNTVSVTKS-SDWFQVVA-KLHSLKSLVLFS 84 (622)
Q Consensus 30 ~~l~~L~~L~L~~n~i~-----------------------~~~~L~~L~Ls~n~l~~~-~~~~~~l~-~l~~L~~L~Ls~ 84 (622)
.++++|++|+++++... ..++|++|++++|.+++. .. .+. .+++|++|+|++
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE---LIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH---HHHHHCTTCCEEEEES
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH---HHHHhCCCCcEEeCCC
Confidence 36788999999886421 127899999999987766 33 443 688999999998
Q ss_pred C-CCCCCCCCcchhc-cccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeeccc--CCCC-CchhhcCCccC
Q 037539 85 C-ALPPVNPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE--LEGG-IPKFFGNMCSL 159 (622)
Q Consensus 85 n-~l~~~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L 159 (622)
| .++.... ..+. .+ ++|++|++++|.+++ ..+.++.. ....+++|++|++++|. ++.. .+..+..+++|
T Consensus 140 ~~~~~~~~l--~~~~~~~-~~L~~L~L~~~~i~~-~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 140 CEGFSTDGL--AAIAATC-RNLKELDLRESDVDD-VSGHWLSH--FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp CEEEEHHHH--HHHHHHC-TTCCEEECTTCEEEC-CCGGGGGG--SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred cCCCCHHHH--HHHHHhC-CCCCEEeCcCCccCC-cchHHHHH--HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 8 4443211 2333 56 899999999998876 44443322 22477899999999886 2211 11223456899
Q ss_pred cEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCc-------ccccCCCCCCCCCCCEE-EeecccCCccCccccC
Q 037539 160 KKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWND-------FTGPIPHLGGFSSLEAW-SLDVNCLNGTIDKSLS 231 (622)
Q Consensus 160 ~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~-------~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~ 231 (622)
++|++++|...+..+.. +..+++ |++|+++.+. +.+..+.+.++++|+.| .+.+... +.++..+.
T Consensus 214 ~~L~L~~~~~~~~l~~~-----~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~ 286 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATL-----LQRAPQ-LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYS 286 (594)
T ss_dssp CEEECCTTSCHHHHHHH-----HHHCTT-CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHH
T ss_pred cEEecCCCCcHHHHHHH-----HhcCCc-ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHH
Confidence 99999988332234555 344445 9999966553 23322236778888888 3433322 23444444
Q ss_pred CCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcc
Q 037539 232 QLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDC 311 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~ 311 (622)
.+++|++|++++|.+++. ....+...+++|+.|++++| +.. ..++..
T Consensus 287 ~~~~L~~L~L~~~~l~~~--------------~l~~~~~~~~~L~~L~l~~~-~~~------------------~~l~~l 333 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY--------------DLVKLLCQCPKLQRLWVLDY-IED------------------AGLEVL 333 (594)
T ss_dssp HHTTCCEEECTTCCCCHH--------------HHHHHHTTCTTCCEEEEEGG-GHH------------------HHHHHH
T ss_pred hhCCCCEEEccCCCCCHH--------------HHHHHHhcCCCcCEEeCcCc-cCH------------------HHHHHH
Confidence 678899999999886532 12233345578888888876 321 011222
Q ss_pred ccCCCCCCEEEccC---------CcccccCCCccC-CCCCccEEeeeCCcCCCCCCcccc-CCCCccEEEcc--C----C
Q 037539 312 WLHFDRLFILNLAN---------NRLSGKIPDSMG-FLNNIWTLNLHNNRLTGKLPSPLR-NFSQLRVLDLE--K----N 374 (622)
Q Consensus 312 ~~~~~~L~~L~L~~---------n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~--~----n 374 (622)
...+++|++|++.+ +.+++.....+. .+++|++|.++.+.+++.....+. .+++|++|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 23467777777733 344433222222 367788887777777654444443 47888888888 3 3
Q ss_pred cccccCch-----hHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh-hcccccceee
Q 037539 375 AIFGEIPT-----WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI-MDLVGLIALN 448 (622)
Q Consensus 375 ~i~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 448 (622)
.+ +..|. .+...+++|+.|++++ .+++..+..+. ..+++|+.|++++|.+++..+..+ ..+++|++|+
T Consensus 414 ~l-~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~----~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 414 YL-TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG----TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TT-TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH----HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred cc-cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH----HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 44 32221 2234678888888876 55543333332 147889999999888876655555 6688899999
Q ss_pred cCCccccCCCcc-ccCCCCCCCEEeCCCCccCccCCccc-cCCCCCCEEECcCCcCcc
Q 037539 449 LSRNHLTGPITP-KIGELTSLDFLDLSRNLFSGSIPCSL-SQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 449 L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~N~l~~ 504 (622)
+++|.+++..+. ....+++|+.|++++|+++......+ ..+|.|+...+..+....
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 999988654443 34457889999999998865444444 566777776666655443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=235.36 Aligned_cols=263 Identities=25% Similarity=0.267 Sum_probs=181.9
Q ss_pred ccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCC
Q 037539 157 CSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236 (622)
Q Consensus 157 ~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 236 (622)
.+++.|++++|.++ .+|..+ . + +|++|++++|.++.. |. .+++|++|++++|.+++ +|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l-----~--~-~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL-----P--A-HITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-LPV---LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC-----C--T-TCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-CCC---CCTTC
T ss_pred CCCcEEEecCCCcC-ccChhh-----C--C-CCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-CCC---CCCCC
Confidence 35788888888887 444432 1 2 488888888887743 33 46788888888888774 343 56788
Q ss_pred CEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCC
Q 037539 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD 316 (622)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 316 (622)
++|++++|.+++ +|. .+++|+.|++++|++++ +|. .++
T Consensus 104 ~~L~Ls~N~l~~---------------l~~----~l~~L~~L~L~~N~l~~--------------------lp~---~l~ 141 (622)
T 3g06_A 104 LELSIFSNPLTH---------------LPA----LPSGLCKLWIFGNQLTS--------------------LPV---LPP 141 (622)
T ss_dssp CEEEECSCCCCC---------------CCC----CCTTCCEEECCSSCCSC--------------------CCC---CCT
T ss_pred CEEECcCCcCCC---------------CCC----CCCCcCEEECCCCCCCc--------------------CCC---CCC
Confidence 888888887763 233 23567777777776652 222 236
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
+|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+ ..+|.. +++|+.|++
T Consensus 142 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l-~~l~~~----~~~L~~L~L 208 (622)
T 3g06_A 142 GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL-ASLPTL----PSELYKLWA 208 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC-SCCCCC----CTTCCEEEC
T ss_pred CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC-CCCCCc----cchhhEEEC
Confidence 77778888777774 332 24677788888887774 44 4457788888888877 445542 467888888
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|.++.... .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|+|++|
T Consensus 209 ~~N~l~~l~~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 209 YNNRLTSLPA---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CSSCCSSCCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred cCCcccccCC---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence 8887774322 34678888888888874 44 456788888888888873 444 5678888888888
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 888 6677788888888888888888876553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=237.96 Aligned_cols=268 Identities=25% Similarity=0.293 Sum_probs=152.9
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
+++.|++++|.++ .+|..+. ++|+.|++++|.++.. |.. ++ +|++|+|++|.+++. |. .+++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~~--------l~-~L~~L~Ls~N~l~~l-p~--~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PAL--------PP-ELRTLEVSGNQLTSL-PV--LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CCC--------CT-TCCEEEECSCCCSCC-CC--CCTTCC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CCc--------CC-CCCEEEcCCCcCCcC-CC--CCCCCC
Confidence 3455555555554 3343332 4555555555555432 211 11 355555555555432 22 445566
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
+|++++|.+++. |. .+++|++|++++|+++. +|.. +++|++|++++|++.+
T Consensus 105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~---------------lp~~----l~~L~~L~Ls~N~l~~------ 155 (622)
T 3g06_A 105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS---------------LPVL----PPGLQELSVSDNQLAS------ 155 (622)
T ss_dssp EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC---------------CCCC----CTTCCEEECCSSCCSC------
T ss_pred EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc---------------CCCC----CCCCCEEECcCCcCCC------
Confidence 666666655532 22 34566666666666652 2221 1456666666665542
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
+|. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++ +|. ..++|+.|++++
T Consensus 156 --------------l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 156 --------------LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp --------------CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred --------------cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 111 12355666666666653 23 234566666666666653 332 235666677777
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..+|. .+++|+.|++++|++++ +| . .+++|+.|++++|.++ .+|. .+++|+.|+|++|.
T Consensus 211 N~l-~~l~~----~~~~L~~L~Ls~N~L~~-lp---~-----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 211 NRL-TSLPA----LPSGLKELIVSGNRLTS-LP---V-----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp SCC-SSCCC----CCTTCCEEECCSSCCSC-CC---C-----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred Ccc-cccCC----CCCCCCEEEccCCccCc-CC---C-----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 666 44543 24567777777777664 22 1 4567777777777777 3443 56778888888888
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 87 5677788888888888888888877777665544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-27 Score=234.62 Aligned_cols=254 Identities=23% Similarity=0.240 Sum_probs=131.1
Q ss_pred hcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccc-cCCC-CC-------CCCCCCEEEeecccCC
Q 037539 153 FGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTG-PIPH-LG-------GFSSLEAWSLDVNCLN 223 (622)
Q Consensus 153 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~-~~~~-l~-------~l~~L~~L~L~~n~l~ 223 (622)
++..++|+.|++++|.+ ..|..+.. .|++|++++|.+.. ..+. +. ++++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 44556677777777766 44544322 26666666666632 2332 22 4667777777777777
Q ss_pred ccCcccc--CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCC
Q 037539 224 GTIDKSL--SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSS 301 (622)
Q Consensus 224 ~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~ 301 (622)
+..|..+ ..+++|++|++++|++++ +|..+....
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~l~----------------------------- 144 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWAT---------------RDAWLAELQ----------------------------- 144 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSS---------------SSSHHHHHH-----------------------------
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcc---------------hhHHHHHHH-----------------------------
Confidence 6666655 667777777777776652 132222210
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCC--CCccc--cCCCCccEEEccCCccc
Q 037539 302 NLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGK--LPSPL--RNFSQLRVLDLEKNAIF 377 (622)
Q Consensus 302 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~l--~~l~~L~~L~L~~n~i~ 377 (622)
...+++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.
T Consensus 145 ----------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 145 ----------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ----------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ----------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 00113455555555555544445555555555555555554422 11122 45556666666666552
Q ss_pred c--cCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcccc
Q 037539 378 G--EIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLT 455 (622)
Q Consensus 378 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 455 (622)
+ .++..++..+++|++|++++|++++.+|. ..+..+++|++|++++|.++
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----------------------------PSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----------------------------SCCCCCTTCCEEECTTSCCS
T ss_pred chHHHHHHHHhcCCCCCEEECCCCcCCcccch----------------------------hhhhhcCCCCEEECCCCccC
Confidence 1 22223333345555555555555443321 22333455555555555555
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 456 GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 456 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
.+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3444433 5556666666665543 43 555566666666666655
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=243.34 Aligned_cols=171 Identities=25% Similarity=0.168 Sum_probs=113.1
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+...+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 3555666666665544333 2456777777777777666667777777777777777776656665554567777777
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+.. .+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 176 Ls~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 176 LQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CTTSCCCEEECCC-------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred cCCCccccccccc-------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 7777776553221 36777777777777774433 47777777777777777773 566677777777777777
Q ss_pred CccC-ccCCccccCCCCCCEEECc
Q 037539 476 NLFS-GSIPCSLSQLSGLGVLDLS 498 (622)
Q Consensus 476 n~l~-~~~~~~l~~l~~L~~L~ls 498 (622)
|++. +.+|..+..++.|+.++++
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 7776 4555666666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=232.17 Aligned_cols=260 Identities=20% Similarity=0.159 Sum_probs=153.4
Q ss_pred cccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCC
Q 037539 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213 (622)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~ 213 (622)
.++..+++.+.+.......+..+++|++|++++|.+++..|..+..+ ++ |++|++++|.+++..+ +..+++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~-L~~L~Ls~n~l~~~~~-~~~l~~L~ 83 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-----TK-LELLNLSSNVLYETLD-LESLSTLR 83 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-----TT-CCEEECTTSCCEEEEE-ETTCTTCC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-----Cc-CCEEECCCCcCCcchh-hhhcCCCC
Confidence 45555666665554444455566677777777777776666664333 33 7777777777665443 66666666
Q ss_pred EEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCc
Q 037539 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS 293 (622)
Q Consensus 214 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 293 (622)
+|++++|.+++.. ..++|++|++++|.+++.. .. .+++|++|++++
T Consensus 84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~---------------~~---~~~~L~~L~l~~----------- 129 (317)
T 3o53_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVS---------------CS---RGQGKKNIYLAN----------- 129 (317)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE---------------EC---CCSSCEEEECCS-----------
T ss_pred EEECcCCcccccc-----CCCCcCEEECCCCccCCcC---------------cc---ccCCCCEEECCC-----------
Confidence 6666666665322 2356666666666655321 00 012344444433
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCcc-CCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSM-GFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
|.+.+..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|++|+++
T Consensus 130 --------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 130 --------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLS 199 (317)
T ss_dssp --------SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECC
T ss_pred --------CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECC
Confidence 33444444556666777777777777766555544 3566777777777776643 2 22346677777777
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-ccchHHhhcccccceeecCC
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-GAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 451 (622)
+|.+ ..+|..+. .+++|++|++++|++++ +|..+. .+++|+.|++++|++. +..+..+..++.|+.|++++
T Consensus 200 ~N~l-~~l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 200 SNKL-AFMGPEFQ-SAAGVTWISLRNNKLVL-IEKALR-----FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp SSCC-CEECGGGG-GGTTCSEEECTTSCCCE-ECTTCC-----CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcC-Ccchhhhc-ccCcccEEECcCCcccc-hhhHhh-----cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 7776 44444443 56777777777777663 333332 5666777777777766 55566666666777666664
Q ss_pred c
Q 037539 452 N 452 (622)
Q Consensus 452 n 452 (622)
+
T Consensus 272 ~ 272 (317)
T 3o53_A 272 V 272 (317)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=212.71 Aligned_cols=210 Identities=22% Similarity=0.185 Sum_probs=175.2
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555666678889999999999999998877889999999999999999987777889999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCccc-CChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc----ee
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN-IPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI----AL 447 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L 447 (622)
+|.+. .++...+..+++|++|++++|.+.+. +|..+. .+++|++|++++|++++..+..+..+++|+ +|
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-----GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhc-----cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 99984 44443334789999999999999864 466665 789999999999999988778888888887 89
Q ss_pred ecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 448 NLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 448 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.|.+|..
T Consensus 183 ~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp ECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 9999999965555554 458999999999999877777899999999999999999998754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=208.15 Aligned_cols=187 Identities=24% Similarity=0.267 Sum_probs=160.5
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEE
Confidence 5788888888888877777888888999999999888866666778888999999999988 556666555788999999
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 116 l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFD-----SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccCeeCHHHhC-----cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 999998877766665 789999999999999977777789999999999999999987777899999999999999
Q ss_pred CccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999987777789999999999999999988764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=200.35 Aligned_cols=205 Identities=24% Similarity=0.274 Sum_probs=179.9
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+ ..++..++..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 5789999999998 4565543 6899999999999977777999999999999999999 6788777767999999999
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999977666555 7999999999999999888888999999999999999999777777999999999999999
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
++++..+..|..+++|++|++++|++++..+.. ..+..++.+.+.+||+.|+|+
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999888888999999999999999998544432 346778888999999999875
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=203.75 Aligned_cols=208 Identities=21% Similarity=0.173 Sum_probs=178.6
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEE
Confidence 579999999999998888889999999999999999997777889999999999999999944 4444344799999999
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc-chHHhhcccccceeecCCccccCCCccccCCCCCCC----E
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA-IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD----F 470 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~ 470 (622)
+++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .
T Consensus 107 l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 107 AVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CTTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 999999977665555 799999999999999864 588999999999999999999987777887777777 9
Q ss_pred EeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 471 LDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 471 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
|++++|++++..+..+.. .+|++|++++|++++..+.. ..+..++.+.+.+|++.|+|+
T Consensus 182 L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999999999776665544 48999999999998554432 457788889999999999886
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=203.53 Aligned_cols=181 Identities=25% Similarity=0.188 Sum_probs=138.7
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+.++.|++++|++++..+..|..+++|++|++++|.+++..+ ...+++|++|++++|.+ ..+|..+. .+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l-~~l~~~~~-~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL-QSLPLLGQ-TLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC-SSCCCCTT-TCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC-CcCchhhc-cCCCCCEEE
Confidence 466777777777776666667777777777777777764322 25677777777777777 56665544 577778888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 107 l~~N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 107 VSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCSSCCCCCCSSTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCcccCHHHHc-----CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 888877766665555 678888888888888877777788889999999999999876666778899999999999
Q ss_pred CccCccCCccccCCCCCCEEECcCCcCcccC
Q 037539 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 506 (622)
|+++ .+|..+...++|+.+++++|++.|.+
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9998 66777778889999999999998765
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=222.67 Aligned_cols=224 Identities=22% Similarity=0.133 Sum_probs=179.7
Q ss_pred CCchhHHhcC---CCCcEEEccCCcCcccCCCC-----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCC
Q 037539 263 SIPDWFWDLS---NKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334 (622)
Q Consensus 263 ~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~-----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 334 (622)
.+|..+.... ++|+.|++++|.+.+..|.. .|+.|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 3455544432 38999999999998766532 79999999999987655 8899999999999999885432
Q ss_pred ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
.++|++|++++|.+++..+. .+++|++|++++|.+.+..|..+. .+++|++|++++|.+++.+|..+.
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~---- 165 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELA---- 165 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGG----
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHh----
Confidence 38899999999999865443 468899999999999665565555 689999999999999987776553
Q ss_pred hhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 037539 415 STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGV 494 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 494 (622)
..+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++.++ .+..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 157899999999999986532 3468999999999999986444 48889999999999999995 6777888999999
Q ss_pred EECcCCcCccc
Q 037539 495 LDLSYNNLSGK 505 (622)
Q Consensus 495 L~ls~N~l~~~ 505 (622)
|++++|++.|.
T Consensus 242 L~l~~N~l~c~ 252 (487)
T 3oja_A 242 FDLRGNGFHCG 252 (487)
T ss_dssp EECTTCCBCHH
T ss_pred EEcCCCCCcCc
Confidence 99999999843
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=202.81 Aligned_cols=206 Identities=23% Similarity=0.255 Sum_probs=178.6
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+ ..++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC--CCCCcC
Confidence 567889999999999998 4555543 7899999999999988888999999999999999999 455544 368999
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
++|++++|++. .+|..+. .+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~-----~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCS-SCCCCTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCcCC-cCchhhc-----cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 99999999998 4454443 79999999999999998778889999999999999999998888889999999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+|++|++++..+..|..+++|++|++++|+++ .+|.+ .....+..+.+.+||+.|+|.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999777777899999999999999999 55554 445567888899999999874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=200.75 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=17.1
Q ss_pred CCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCC
Q 037539 131 HMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSG 171 (622)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 171 (622)
.+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 34444444444444443333334444444444444444443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=200.59 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=155.7
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCc
Q 037539 71 VAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIP 150 (622)
Q Consensus 71 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 150 (622)
+..+++|++|++++|.+... ..+..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~----~~l~~l-~~L~~L~l~~n~l~~--~-------~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV----QGIQYL-PNVRYLALGGNKLHD--I-------SALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC----TTGGGC-TTCCEEECTTSCCCC--C-------GGGTTCTTCCEEECTTSCCCCCCT
T ss_pred cccccceeeeeeCCCCcccc----cccccC-CCCcEEECCCCCCCC--c-------hhhcCCCCCCEEECCCCccCccCh
Confidence 45567777777777777654 245666 788888888887764 1 234677888888888888887777
Q ss_pred hhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccc
Q 037539 151 KFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKS 229 (622)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~ 229 (622)
..|..+++|++|++++|++++..+..+ +.+++ |++|++++|.+++..+. ++.+++|++|++++|.+++..+..
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTN-LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCC-CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 778888888888888888887776663 44444 88888888888876666 788888888888888888777777
Q ss_pred cCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccC
Q 037539 230 LSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLP 309 (622)
Q Consensus 230 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~ 309 (622)
+..+++|++|++++|++++ ++...+..+++|+.|++++|++.+..| .++.+++..|.+.|.+|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~l~~N~~~~~~~--~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTSLQYIWLHDNPWDCTCP--GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTCCEEECCSSCBCCCTT--TTHHHHHHHHHTGGGBB
T ss_pred hcCCccCCEEECCCCcCCc---------------cCHHHHhCCcCCCEEEccCCCccccCc--HHHHHHHHHHhCCCccc
Confidence 7888888888888888763 333434445688888888888887766 36667777788888888
Q ss_pred ccccCCCC
Q 037539 310 DCWLHFDR 317 (622)
Q Consensus 310 ~~~~~~~~ 317 (622)
..++.+..
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 77665543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=195.51 Aligned_cols=214 Identities=21% Similarity=0.218 Sum_probs=153.4
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+ ++...+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 4566777777776 4444443 577777777777777666677777788888888877743 44443336778888888
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 91 ~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFD-----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhc-----ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 88887766655554 6888888888888888776777888999999999999999777778999999999999999
Q ss_pred ccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCcc------CcccccCCcCCCCCCCCCCCCCCCC
Q 037539 477 LFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSF------NASVYAGNLELCGLPLANMCLDEES 540 (622)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l------~~~~~~~n~~lc~~~~~~~C~~~~~ 540 (622)
++++..+..+..+++|+.|++++|++.|..+....+... ......++ .+|+.+....|..+..
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDGKV 234 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTSCB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCCcE
Confidence 999888888999999999999999999874332111111 11112233 3566777778876643
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-23 Score=212.93 Aligned_cols=189 Identities=21% Similarity=0.226 Sum_probs=109.9
Q ss_pred CCCCEEEccCCcccccCCCc----cCCC-CCccEEeeeCCcCCCCCCcc----ccC-CCCccEEEccCCcccccCchhHH
Q 037539 316 DRLFILNLANNRLSGKIPDS----MGFL-NNIWTLNLHNNRLTGKLPSP----LRN-FSQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~----l~~-l~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|++++|++++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+..+..+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 45555555555555443332 2222 56666666666665443332 223 24677777777776433332221
Q ss_pred h---hcc-cccEeecCCCcCcccCChhhhHhHhhhc-CCccEEECCCCcCCcc----chHHhhc-ccccceeecCCcccc
Q 037539 386 E---SLQ-NLIVLSLKSNKFHGNIPYQFENEYKSTL-GLVRCLDLSSNKLDGA----IPEEIMD-LVGLIALNLSRNHLT 455 (622)
Q Consensus 386 ~---~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~ 455 (622)
. .++ +|++|++++|++++..+..+...+. .. ++|++|+|++|.+++. ++..+.. .++|++|+|++|.++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 1 233 6777777777776666555543333 33 4777777777777642 3444544 347777777777777
Q ss_pred CCCc----cccCCCCCCCEEeCCCCccCcc-------CCccccCCCCCCEEECcCCcCccc
Q 037539 456 GPIT----PKIGELTSLDFLDLSRNLFSGS-------IPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 456 ~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+..+ ..+..+++|++|+|++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 6544 2345667788888877774433 233456677788888888887654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-24 Score=224.35 Aligned_cols=195 Identities=20% Similarity=0.191 Sum_probs=114.0
Q ss_pred cCCCCCCEEEccCCcccc----cCCCccCCCCCccEEeeeCCcCCCCCCcc----ccCC---------CCccEEEccCCc
Q 037539 313 LHFDRLFILNLANNRLSG----KIPDSMGFLNNIWTLNLHNNRLTGKLPSP----LRNF---------SQLRVLDLEKNA 375 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----l~~l---------~~L~~L~L~~n~ 375 (622)
..+++|++|++++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344444444444444443 23333444455555555555543221111 2222 667777777776
Q ss_pred cc-ccCch--hHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC----ccchHHhhcccccceee
Q 037539 376 IF-GEIPT--WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD----GAIPEEIMDLVGLIALN 448 (622)
Q Consensus 376 i~-~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ 448 (622)
+. ..++. ..+..+++|++|++++|.++......+....+..+++|+.|+|++|.++ ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 64 22331 1222566777777777776632211121112236777788888877775 45677777788888888
Q ss_pred cCCccccCC----Ccccc--CCCCCCCEEeCCCCccCc----cCCccc-cCCCCCCEEECcCCcCcccCC
Q 037539 449 LSRNHLTGP----ITPKI--GELTSLDFLDLSRNLFSG----SIPCSL-SQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 449 L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~ls~N~l~~~~p 507 (622)
|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888887754 34555 337888888888888886 366666 557888888888888876543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-23 Score=211.51 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=94.3
Q ss_pred CCCCEEEccCCcccccCCCc----cCC-CCCccEEeeeCCcCCCCCC----ccccCCC-CccEEEccCCcccccCchhHH
Q 037539 316 DRLFILNLANNRLSGKIPDS----MGF-LNNIWTLNLHNNRLTGKLP----SPLRNFS-QLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~----~~~-l~~L~~L~Ls~n~i~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~~~~~~ 385 (622)
++|++|++++|++++..+.. +.. .++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 45555555555555433322 222 2356666666665553222 2233343 677777777766444443332
Q ss_pred h---hc-ccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH----HhhcccccceeecCCccccCC
Q 037539 386 E---SL-QNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE----EIMDLVGLIALNLSRNHLTGP 457 (622)
Q Consensus 386 ~---~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~ 457 (622)
. .+ ++|++|++++|.+++.....+...+....++|++|+|++|.+++..+. .+..+++|++|++++|.+.+.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 1 23 467777777777765544444433333345777777777777654443 234567777777777774433
Q ss_pred Cc-------cccCCCCCCCEEeCCCCccCccCC
Q 037539 458 IT-------PKIGELTSLDFLDLSRNLFSGSIP 483 (622)
Q Consensus 458 ~~-------~~l~~l~~L~~L~Ls~n~l~~~~~ 483 (622)
.+ ..+..+++|+.||+++|++....+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22 356677778888888888775543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=194.68 Aligned_cols=233 Identities=19% Similarity=0.233 Sum_probs=140.9
Q ss_pred CcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhh--cCCccCcEeEeecCCCCCcCchhhhh
Q 037539 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF--GNMCSLKKLRLSYNKLSGQYSQVIQN 179 (622)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~~~~~~ 179 (622)
..++.+.+.++.++. . .+.....+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..- .
T Consensus 64 ~~l~~l~l~~~~~~~-~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~ 138 (310)
T 4glp_A 64 LRVRRLTVGAAQVPA-Q---LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-E 138 (310)
T ss_dssp CCCCEEEECSCCCBH-H---HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-H
T ss_pred cceeEEEEeCCcCCH-H---HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-H
Confidence 457788888887754 1 11111122345679999999999888888877 888899999999998886544210 0
Q ss_pred ccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCcc--C--ccccCCCCCCCEEEccCCCCcccccccc
Q 037539 180 LSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGT--I--DKSLSQLSKLESLSLDGNSLRAISLCIL 254 (622)
Q Consensus 180 l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 254 (622)
..+..+++ |++|++++|.+.+..+. ++.+++|++|++++|++.+. . +..+..+++|++|++++|+++...
T Consensus 139 ~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---- 213 (310)
T 4glp_A 139 LQQWLKPG-LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---- 213 (310)
T ss_dssp HHTTBCSC-CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----
T ss_pred HHhhhccC-CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----
Confidence 00344555 88888888888777666 88888888888888887542 1 223467788888888888776321
Q ss_pred cCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCC---CCCCEEEccCCccccc
Q 037539 255 TSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHF---DRLFILNLANNRLSGK 331 (622)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~ 331 (622)
..+.+++..+++|++|++++|++.+. .|..+..+ ++|++|++++|+++ .
T Consensus 214 --------~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~ 265 (310)
T 4glp_A 214 --------GVCAALAAAGVQPHSLDLSHNSLRAT-------------------VNPSAPRCMWSSALNSLNLSFAGLE-Q 265 (310)
T ss_dssp --------HHHHHHHHHTCCCSSEECTTSCCCCC-------------------CCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred --------HHHHHHHhcCCCCCEEECCCCCCCcc-------------------chhhHHhccCcCcCCEEECCCCCCC-c
Confidence 22222333445666666665555432 22222222 45666666666655 3
Q ss_pred CCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 332 IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 332 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
+|..+. ++|++|++++|++++. |. +..+++|++|++++|++
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 344332 4555555555555532 22 34455555555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=201.44 Aligned_cols=206 Identities=21% Similarity=0.186 Sum_probs=161.1
Q ss_pred CCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccc--cCCCCCCEEEccCCcccccCC----CccCCCCCccEEe
Q 037539 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCW--LHFDRLFILNLANNRLSGKIP----DSMGFLNNIWTLN 346 (622)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~ 346 (622)
++|++|++++|.+.+ ..|..+ ..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~ 151 (310)
T 4glp_A 91 SRLKELTLEDLKITG-------------------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS 151 (310)
T ss_dssp SCCCEEEEESCCCBS-------------------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE
T ss_pred CceeEEEeeCCEecc-------------------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE
Confidence 357777777766653 455555 788899999999999986544 3345689999999
Q ss_pred eeCCcCCCCCCccccCCCCccEEEccCCccccc--Cc-hhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 347 LHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE--IP-TWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 347 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
+++|.+.+..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|+++...+ . ...+...+++|++|
T Consensus 152 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~~l~~L~~L 229 (310)
T 4glp_A 152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-V-CAALAAAGVQPHSL 229 (310)
T ss_dssp EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-H-HHHHHHHTCCCSSE
T ss_pred eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-H-HHHHHhcCCCCCEE
Confidence 999999988888999999999999999987442 22 2222368899999999999863221 1 11223478999999
Q ss_pred ECCCCcCCccchHHhhcc---cccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 424 DLSSNKLDGAIPEEIMDL---VGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+|++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 999999998778777776 69999999999999 5677664 8999999999999964 43 678899999999999
Q ss_pred cCcc
Q 037539 501 NLSG 504 (622)
Q Consensus 501 ~l~~ 504 (622)
+++.
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9874
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-23 Score=215.07 Aligned_cols=97 Identities=22% Similarity=0.138 Sum_probs=48.2
Q ss_pred CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcc---cccCCC--------CCCCCCCCEEEe
Q 037539 149 IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDF---TGPIPH--------LGGFSSLEAWSL 217 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~---~~~~~~--------l~~l~~L~~L~L 217 (622)
++..+..+++|++|++++|.+++..+..+... +..+++ |++|+|++|.+ .+.+|. +..+++|++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHH-HHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 33444444555555555555444433333222 333333 55555554322 111121 245566666666
Q ss_pred ecccCCc----cCccccCCCCCCCEEEccCCCCc
Q 037539 218 DVNCLNG----TIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 218 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
++|.+++ .++..+..+++|++|++++|.++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 6666654 34555666777777777777664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=205.66 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=99.7
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCC-cCCC-CCCccccCCCCccEEEccCC-ccccc-CchhHHhhcc-ccc
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNN-RLTG-KLPSPLRNFSQLRVLDLEKN-AIFGE-IPTWIGESLQ-NLI 392 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~-~L~ 392 (622)
|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++..+. .++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCC
Confidence 333333333333333333334444444444444 2332 12333445566666666666 55332 233333 566 666
Q ss_pred EeecCCCc--Cc-ccCChhhhHhHhhhcCCccEEECCCCc-CCccchHHhhcccccceeecCCcc-ccCCCccccCCCCC
Q 037539 393 VLSLKSNK--FH-GNIPYQFENEYKSTLGLVRCLDLSSNK-LDGAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTS 467 (622)
Q Consensus 393 ~L~L~~n~--l~-~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 467 (622)
+|++++|. ++ +.++..+ ..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLV-----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHH-----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EEEeCCCcccCCHHHHHHHH-----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 66666663 33 1222222 257777777777777 565666677777888888888874 33222335677888
Q ss_pred CCEEeCCCCccCccCCccccCC-CCCCEEECcCCcCcccCCCC
Q 037539 468 LDFLDLSRNLFSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 468 L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~ 509 (622)
|++|++++| ++.. .+..+ ..++.|++++|++++..|..
T Consensus 274 L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 274 LKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 888888888 4432 23333 23566667888888776653
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-22 Score=204.57 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=162.7
Q ss_pred CCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc-CCCccCCCCCccEEeeeCCc
Q 037539 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+.++.|++++|.+.+ ..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~-------------------~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ-------------------PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp TTCSEEECTTCEECS-------------------CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred ccceEEEcCCccccc-------------------cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc
Confidence 466666666665553 3222 45688999999999998865 77778899999999999999
Q ss_pred CCCCCCccccCCCCccEEEccCC-ccccc-CchhHHhhcccccEeecCCC-cCccc-CChhhhHhHhhhcC-CccEEECC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKN-AIFGE-IPTWIGESLQNLIVLSLKSN-KFHGN-IPYQFENEYKSTLG-LVRCLDLS 426 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~l~-~L~~L~L~ 426 (622)
+++..+..+..+++|++|++++| .+.+. ++..+ ..+++|++|++++| .+++. ++..+ ..++ +|++|+++
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~l~~~L~~L~l~ 203 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLS 203 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHH-----HHSCTTCCEEECC
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHH-----HhcccCCCEEEeC
Confidence 98777888999999999999999 67443 44444 47999999999999 88753 23323 3788 99999999
Q ss_pred CC--cCC-ccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCEEeCCCCc-cCccCCccccCCCCCCEEECcCC
Q 037539 427 SN--KLD-GAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDFLDLSRNL-FSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 427 ~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99 555 4667788899999999999999 777788899999999999999995 43333336888999999999999
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-22 Score=188.65 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=123.0
Q ss_pred cCccccCccccCCCCCCEEEccCCc-ccccCCCccCCCCCccEEeeeC-CcCCCCCCccccCCCCccEEEccCCcccccC
Q 037539 303 LLSGGLPDCWLHFDRLFILNLANNR-LSGKIPDSMGFLNNIWTLNLHN-NRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380 (622)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 380 (622)
.+.+..+..|..+++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|++|++++|.+ ..+
T Consensus 42 ~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~l 120 (239)
T 2xwt_C 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMF 120 (239)
T ss_dssp CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSC
T ss_pred cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccc
Confidence 3333444466777777778887776 7666666777777777887777 777766666777777777777777777 446
Q ss_pred chhHHhhccccc---EeecCCC-cCcccCChhhhHhHhhhcCCcc-EEECCCCcCCccchHHhhcccccceeecCCcc-c
Q 037539 381 PTWIGESLQNLI---VLSLKSN-KFHGNIPYQFENEYKSTLGLVR-CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH-L 454 (622)
Q Consensus 381 ~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 454 (622)
|. +..+++|+ +|++++| .+++..+..+. .+++|+ .|++++|+++...+..+.. ++|++|++++|+ +
T Consensus 121 p~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-----~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 121 PD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-----GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT-----TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred cc--cccccccccccEEECCCCcchhhcCccccc-----chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence 65 22566666 7777777 66655554444 567777 7777777776333333333 677777777774 7
Q ss_pred cCCCccccCCC-CCCCEEeCCCCccCccCCccccCCCCCCEEECcCC
Q 037539 455 TGPITPKIGEL-TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 455 ~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred ccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 65555667777 7777777777777643 332 5566777777665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=186.52 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=167.4
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-CCCCCCccccCCCCccEEEccC-CcccccCchhHHhhcccccE
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-LTGKLPSPLRNFSQLRVLDLEK-NAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++++|++++|++++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+ ..++...+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCE
Confidence 389999999999998888889999999999999997 8877777899999999999998 998 5666655557999999
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCcc---EEECCCC-cCCccchHHhhcccccc-eeecCCccccCCCccccCCCCCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVR---CLDLSSN-KLDGAIPEEIMDLVGLI-ALNLSRNHLTGPITPKIGELTSL 468 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L 468 (622)
|++++|++++ +|. +. .+++|+ .|++++| .+++..+..|.++++|+ +|++++|.++...+..+.. ++|
T Consensus 110 L~l~~n~l~~-lp~-~~-----~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LT-----KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL 181 (239)
T ss_dssp EEEEEECCCS-CCC-CT-----TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred EeCCCCCCcc-ccc-cc-----cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence 9999999986 443 33 677787 9999999 99977777899999999 9999999999444445555 899
Q ss_pred CEEeCCCCc-cCccCCccccCC-CCCCEEECcCCcCcccCCCCCcCCccCcccccCC
Q 037539 469 DFLDLSRNL-FSGSIPCSLSQL-SGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGN 523 (622)
Q Consensus 469 ~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 523 (622)
+.|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .+..++.+.+.++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 999999995 997778889999 99999999999998 55654 6777776666554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=181.60 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=132.4
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+.++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEE
Confidence 4788888888888877777788888888888888888877777788888888888888888 455555555788888888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++
T Consensus 114 L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LGGNQLKSLPSGVFD-----RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcCCCcChhHhc-----cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888888866665554 688899999999999877777888999999999999999987777899999999999999
Q ss_pred CccCcc
Q 037539 476 NLFSGS 481 (622)
Q Consensus 476 n~l~~~ 481 (622)
|++...
T Consensus 189 N~~~c~ 194 (251)
T 3m19_A 189 NQFDCS 194 (251)
T ss_dssp CCBCTT
T ss_pred CceeCC
Confidence 999865
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=187.89 Aligned_cols=189 Identities=22% Similarity=0.324 Sum_probs=153.7
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccC
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 373 (622)
++.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 3444444444432 33 57788999999999999986544 88999999999999999853 3688999999999999
Q ss_pred CcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCcc
Q 037539 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH 453 (622)
Q Consensus 374 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 453 (622)
|.+ ..++. + ..+++|++|++++|.+++..+ +. .+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 117 n~l-~~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~-----~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 117 TQI-TDVTP-L-AGLSNLQVLYLDLNQITNISP--LA-----GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp SCC-CCCGG-G-TTCTTCCEEECCSSCCCCCGG--GG-----GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCC-CCchh-h-cCCCCCCEEECCCCccCcCcc--cc-----CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 998 45554 3 378999999999999986544 32 78999999999999985444 8899999999999999
Q ss_pred ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 454 LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 454 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 986443 8889999999999999996553 8899999999999999974
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=184.31 Aligned_cols=191 Identities=24% Similarity=0.284 Sum_probs=117.7
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
++|++|++++|.++..+ .+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++ + ..
T Consensus 41 ~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~----~~~~l-~~L~~L~L~~n~l~~--~-------~~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLA----PLKNL-TKITELELSGNPLKN--V-------SA 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-CSCCEEECCSCCCSC--C-------GG
T ss_pred CCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCCh----hHccC-CCCCEEEccCCcCCC--c-------hh
Confidence 66666666666665544 3566677777777777666542 25555 677777777777653 1 12
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ ++.+++ |++|++++|.+++..+ +..
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~-L~~L~l~~n~l~~~~~-l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-------LAGLTN-LQYLSIGNAQVSDLTP-LAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTT-CCEEECCSSCCCCCGG-GTT
T ss_pred hcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-------ccCCCC-ccEEEccCCcCCCChh-hcC
Confidence 45667777777777776643 2 26667777777777777665433 233333 7777777776664333 666
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRG 287 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 287 (622)
+++|++|++++|.+++..+ +..+++|++|++++|++++. +. + ..+++|+.|++++|++.+
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------------~~-l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---------------SP-L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC---------------GG-G-TTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc---------------cc-c-cCCCCCCEEEccCCeeec
Confidence 7777777777777764432 66667777777777776532 21 2 234577777777777654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=181.12 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=38.5
Q ss_pred cCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCc
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
-++++.++++++..+..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC
Confidence 356677777776433324 256778888888877665567777777777777777754
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=173.60 Aligned_cols=158 Identities=24% Similarity=0.227 Sum_probs=119.3
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
.+++++|.++ .+|..+. +.+++|++++|.+.+..+...+..+++|++|++++|++++..+..+. .+++|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-----~l~~L~~L 86 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-----GASGVNEI 86 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEE
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-----CCCCCCEE
Confidence 4555555554 2333322 23456666666663333433334566777777777776665555554 67888888
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88888888777888899999999999999999888899999999999999999999888999999999999999999999
Q ss_pred ccCCCC
Q 037539 504 GKIPSG 509 (622)
Q Consensus 504 ~~~p~~ 509 (622)
|.++..
T Consensus 167 c~c~l~ 172 (220)
T 2v70_A 167 CNCYLA 172 (220)
T ss_dssp CSGGGH
T ss_pred CCCchH
Confidence 887643
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=166.14 Aligned_cols=163 Identities=21% Similarity=0.228 Sum_probs=96.0
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+ ..++...+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEE
Confidence 3556666666666554444555566666666666666544444555666666666666665 344443333556666666
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.
T Consensus 107 L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFD-----KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI 174 (208)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHH
T ss_pred cCCCcCcccCHhHhc-----cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHH
Confidence 666666544443333 46666666666666665555556666666677776665542 345666667777
Q ss_pred CccCccCCccccCCCC
Q 037539 476 NLFSGSIPCSLSQLSG 491 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~ 491 (622)
|.+++.+|+.++.++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 7777666666665543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=176.21 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=124.3
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~ 184 (622)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|... |..
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~----f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV----FSN 77 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS----BCS
T ss_pred CEEEecCCCCC--ccCcCc--------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH----hhc
Confidence 45555666665 344322 1456666666666664444556666666666666666654433211 333
Q ss_pred cCCCcCE-EEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccC-CCCcccccccccCCCCcc
Q 037539 185 VVNSLEG-LYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG-NSLRAISLCILTSPIGIS 261 (622)
Q Consensus 185 ~~~~L~~-L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~ 261 (622)
+++ +++ +.+++|+++...+. |..+++|++|++++|.++...+..+....++..|++.+ +.+..
T Consensus 78 L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~------------- 143 (350)
T 4ay9_X 78 LPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT------------- 143 (350)
T ss_dssp CTT-CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------
T ss_pred chh-hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-------------
Confidence 333 433 44455666655555 66666666666666666655554555555566666644 33432
Q ss_pred cCCchh-HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccC-CcccccCCCccCCC
Q 037539 262 DSIPDW-FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN-NRLSGKIPDSMGFL 339 (622)
Q Consensus 262 ~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l 339 (622)
++.. +......++.|++++|++.. ++.......+|+++++++ |.++...++.|..+
T Consensus 144 --l~~~~f~~~~~~l~~L~L~~N~i~~--------------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 144 --IERNSFVGLSFESVILWLNKNGIQE--------------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp --ECTTSSTTSBSSCEEEECCSSCCCE--------------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred --ccccchhhcchhhhhhccccccccC--------------------CChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 1211 11222245555555555442 222222334566666653 45554444456666
Q ss_pred CCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCC
Q 037539 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSN 399 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n 399 (622)
++|++|++++|+++...+..+ .+|+.|.+.++.-.+.+|. + ..+++|+.+++.++
T Consensus 202 ~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP 256 (350)
T ss_dssp ECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred cccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence 677777777776664333333 3444444444433355553 2 25667777776543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=167.95 Aligned_cols=175 Identities=22% Similarity=0.255 Sum_probs=145.1
Q ss_pred CEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCC
Q 037539 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKS 398 (622)
Q Consensus 319 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~ 398 (622)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCC
Confidence 56777777776 344433 46899999999999977777788999999999999998 566666655789999999999
Q ss_pred CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCcc
Q 037539 399 NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478 (622)
Q Consensus 399 n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 478 (622)
|++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 86 n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFD-----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhc-----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 999876665554 789999999999999977777788999999999999999977777788999999999999987
Q ss_pred CccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 479 SGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
.+ .++.|+.|++++|++++.+|..
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ec-------CCCCHHHHHHHHHhCCceeecc
Confidence 63 4567899999999999998864
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=169.94 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=112.3
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL 444 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 444 (622)
+|++|++++|.+ ..++...+..+++|++|++++|++.+..|..+. .+++|++|+|++|.+++..+..|..+++|
T Consensus 33 ~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 33 TITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-----GLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-----CCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 444444444444 223322222445555555555555544444443 56677777777777775555567788889
Q ss_pred ceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCc
Q 037539 445 IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNL 524 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 524 (622)
++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.|.++. ..+... +..++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l----~~l~~~-l~~~~ 181 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL----KWLADY-LHTNP 181 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG----HHHHHH-HHHCC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc----HHHHHH-HHhCC
Confidence 9999999999888888899999999999999999988888899999999999999999887543 222111 11111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 525 ELCGLPLANMCLDEESTPGPGTDDDS 550 (622)
Q Consensus 525 ~lc~~~~~~~C~~~~~~~~~~~~~~~ 550 (622)
.. .....|..|...+|....+..
T Consensus 182 ~~---~~~~~C~~P~~l~g~~l~~l~ 204 (220)
T 2v9t_B 182 IE---TSGARCTSPRRLANKRIGQIK 204 (220)
T ss_dssp CB---CSCCBEEESGGGTTCBGGGSC
T ss_pred CC---ccCCCcCCchHHcCCchhhCC
Confidence 11 123468777777776655544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=185.98 Aligned_cols=181 Identities=25% Similarity=0.359 Sum_probs=97.5
Q ss_pred CCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCC
Q 037539 274 KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLT 353 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 353 (622)
+++.|++++|.+.+ +| ..+ +++|++|++++|+++ .+| ..+++|++|++++|.++
T Consensus 60 ~L~~L~Ls~n~L~~-lp-------------------~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP-------------------DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSCCSC-CC-------------------SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCc-cC-------------------HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence 67777777777664 22 222 145556666666555 333 23455666666666555
Q ss_pred CCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 354 GKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 354 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
+ +|. +.. +|++|++++|.+ ..+|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQL-TMLPE----LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-
T ss_pred C-cch-hhc--CCCEEECCCCcC-CCCCC----cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-
Confidence 3 343 333 566666666655 23444 24556666666666554 222 24556666666666653
Q ss_pred chHHhhcccccceeecCCccccCCCccccCCCCCC-------CEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccC
Q 037539 434 IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSL-------DFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506 (622)
Q Consensus 434 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 506 (622)
+|. |. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 333 33 56666666666665 3343 333 44 66666666666 35555555666666666666666554
Q ss_pred C
Q 037539 507 P 507 (622)
Q Consensus 507 p 507 (622)
|
T Consensus 247 p 247 (571)
T 3cvr_A 247 R 247 (571)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-19 Score=180.49 Aligned_cols=180 Identities=26% Similarity=0.240 Sum_probs=111.2
Q ss_pred CEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCcccc-CCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 319 FILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLR-NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 319 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
+.++++++.++ .+|..+ .+.++.|++++|.+++..+..+. .+++|++|+|++|.+ ..++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECC
Confidence 34555555555 233332 23455666666666554445554 566666666666665 33333333356666666666
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCcccc---CCCCCCCEEeCC
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKI---GELTSLDFLDLS 474 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls 474 (622)
+|+++...+..+. .+++|+.|+|++|++.+..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|+
T Consensus 97 ~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFS-----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhC-----CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 6666554444443 56677777777777776666777777777777777777775444444 557888888888
Q ss_pred CCccCccCCccccCCCC--CCEEECcCCcCcccCC
Q 037539 475 RNLFSGSIPCSLSQLSG--LGVLDLSYNNLSGKIP 507 (622)
Q Consensus 475 ~n~l~~~~~~~l~~l~~--L~~L~ls~N~l~~~~p 507 (622)
+|++++..+..+..++. ++.|++++|++.|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 88888666666777766 4778888888877643
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=170.47 Aligned_cols=173 Identities=26% Similarity=0.331 Sum_probs=140.2
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+ ..++. +. .+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~~~~-l~-~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KDLSS-LK-DLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCGGG-GT-TCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CCChh-hc-cCCCC
Confidence 34677888899998888744 3 47778899999999998885433 88889999999999988 44554 33 68899
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
++|++++|++.+. + .+. .+++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 115 ~~L~L~~n~i~~~-~-~l~-----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 115 KSLSLEHNGISDI-N-GLV-----HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CEEECTTSCCCCC-G-GGG-----GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CEEECCCCcCCCC-h-hhc-----CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 9999999988853 2 222 689999999999999854 578899999999999999986554 8899999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 184 ~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 9999999854 4 48899999999999999874
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-19 Score=165.77 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=137.7
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+.++++++.+ ..+|..+. ++++.|++++|.+++..+..+. .+++|+.|+|++|.+++..|..|.++++|++
T Consensus 14 ~~v~c~~~~l-~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~-----~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP---ETITEIRLEQNTIKVIPPGAFS-----PYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC---TTCCEEECCSSCCCEECTTSST-----TCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCc-CcCCCccC---cCCCEEECCCCcCCCcCHhHhh-----CCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 5788999988 77887653 6899999999999987776665 7999999999999999888999999999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcC
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLE 525 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 525 (622)
|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+..+.+.+|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999999777777899999999999999999999999999999999999999999665542 3467788889999999
Q ss_pred CCCCCC
Q 037539 526 LCGLPL 531 (622)
Q Consensus 526 lc~~~~ 531 (622)
.|+|+.
T Consensus 165 ~c~c~l 170 (220)
T 2v9t_B 165 ICDCHL 170 (220)
T ss_dssp ECSGGG
T ss_pred CCCCcc
Confidence 998764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=182.96 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=133.1
Q ss_pred CCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCcccc
Q 037539 234 SKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWL 313 (622)
Q Consensus 234 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 313 (622)
.+|+.|++++|.+++ +|..+ .++|+.|++++|.+. .+| .
T Consensus 59 ~~L~~L~Ls~n~L~~---------------lp~~l---~~~L~~L~Ls~N~l~--------------------~ip---~ 97 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---------------LPDNL---PPQITVLEITQNALI--------------------SLP---E 97 (571)
T ss_dssp TTCSEEECCSSCCSC---------------CCSCC---CTTCSEEECCSSCCS--------------------CCC---C
T ss_pred CCccEEEeCCCCCCc---------------cCHhH---cCCCCEEECcCCCCc--------------------ccc---c
Confidence 499999999999873 45433 257888888888776 233 2
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.+++|++|++++|++++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+ ..+|. .+++|++
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~ 164 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL-TMLPE----LPTSLEV 164 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC----cCCCcCE
Confidence 35677777777777775 454 443 77777777777775 444 567778888887777 34665 3667788
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc-------ceeecCCccccCCCccccCCCC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL-------IALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
|++++|++++ +|. + . ++|+.|+|++|+++ .+|. +.. +| +.|+|++|.++ .+|..+..++
T Consensus 165 L~Ls~N~L~~-lp~-l------~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-L------P-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp EECCSSCCSC-CCC-C------C-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred EECCCCCCCC-cch-h------h-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 8888887775 333 3 1 67788888888777 4554 443 56 88888888888 5677777788
Q ss_pred CCCEEeCCCCccCccCCccccCCC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLS 490 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~ 490 (622)
+|+.|+|++|++++.+|..+..+.
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhh
Confidence 888888888888888777776543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=168.31 Aligned_cols=185 Identities=21% Similarity=0.257 Sum_probs=132.1
Q ss_pred cCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 33 ERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
.++..+++..+.+.+. ++|++|++++|.++..+ .+..+++|++|++++|.+++.. .+..+ ++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~----~l~~l-~~L~~ 94 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIK----PLANL-KNLGW 94 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCE
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCc----ccccC-CCCCE
Confidence 3344455666655443 77788888888777664 3677888888888888887642 26667 88888
Q ss_pred EEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccC
Q 037539 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~ 186 (622)
|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++. .. ++.++
T Consensus 95 L~l~~n~l~~--~-------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~-----l~~l~ 156 (291)
T 1h6t_A 95 LFLDENKVKD--L-------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV-----LSRLT 156 (291)
T ss_dssp EECCSSCCCC--G-------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-----GGGCT
T ss_pred EECCCCcCCC--C-------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-----hccCC
Confidence 8888888764 2 2246778888888888888753 4577788888888888888765 33 44455
Q ss_pred CCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcc
Q 037539 187 NSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRA 248 (622)
Q Consensus 187 ~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 248 (622)
+ |++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 157 ~-L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 K-LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp T-CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-CCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 5 8888888888776544 77788888888888888753 3 47778888888888887653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=163.20 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=137.8
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh-hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY-QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
+++++++|.+ +.+|..+. +.+++|++++|.+++..+. .+. .+++|+.|+|++|.+++..+..|..+++|+
T Consensus 14 ~~l~~s~n~l-~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~-----~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHIP---QYTAELRLNNNEFTVLEATGIFK-----KLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCC-SSCCSCCC---TTCSEEECCSSCCCEECCCCCGG-----GCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCc-ccCccCCC---CCCCEEEcCCCcCCccCchhhhc-----cCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 5899999998 77887653 5689999999999987553 344 799999999999999988888999999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCc
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNL 524 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~ 524 (622)
+|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+..+.+.+|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999999999888888999999999999999999999999999999999999999999876754 456778888999999
Q ss_pred CCCCCC
Q 037539 525 ELCGLP 530 (622)
Q Consensus 525 ~lc~~~ 530 (622)
+.|+|+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 999886
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=159.60 Aligned_cols=156 Identities=26% Similarity=0.291 Sum_probs=107.4
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
.+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+ +.+|...+..+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l--------- 87 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL--------- 87 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTC---------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccC---------
Confidence 456777777766 444433 26677777777777766666677777777777777776 45554443344
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
++|+.|+|++|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|+
T Consensus 88 --------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 88 --------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp --------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred --------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 44555555555555444455667777777777777777 567777788888888888888
Q ss_pred cCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+++..+..|..+++|+.|++++|++.|.++
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 887666778888888888888888887765
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=156.23 Aligned_cols=156 Identities=26% Similarity=0.260 Sum_probs=120.6
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
..+.++.+++.+. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5678999998887 444433 3789999999999999889999999999999999999987777788999999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|.+ ..++...+..+++|++|++++|+++ .+|..+..+++|+.|+|++|
T Consensus 97 ~N~l-~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 97 TNQL-TVLPSAVFDRLVHLKELFMCCNKLT------------------------------ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SSCC-CCCCTTTTTTCTTCCEEECCSSCCC------------------------------SCCTTGGGCTTCSEEECCSS
T ss_pred CCcC-CccChhHhCcchhhCeEeccCCccc------------------------------ccCcccccCCCCCEEECCCC
Confidence 9999 5566554445666666666665554 44455566677777777777
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSI 482 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 482 (622)
++++..+..|..+++|+.|++++|++....
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777655566777888888888888877543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-18 Score=182.40 Aligned_cols=187 Identities=24% Similarity=0.291 Sum_probs=105.9
Q ss_pred CcEEEccCCcCcccCCCC---cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc
Q 037539 275 LSYLNLSNNHFRGKLPDL---SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR 351 (622)
Q Consensus 275 L~~L~l~~n~l~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 351 (622)
+..+.+..+.+.+..+.. .|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 334445555544333221 566666666666532 2 35666666666666666664433 5566666666666666
Q ss_pred CCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 352 LTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 352 i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
+.+ ++ .+..+++|++|+|++|.+ ..++. +. .+++|+.|+|++|.+.+. ..+. .+++|+.|+|++|.+.
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l-~~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~-----~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGI-SDING-LV-HLPQLESLYLGNNKITDI--TVLS-----RLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCC-CCCGG-GG-GCTTCSEEECCSSCCCCC--GGGG-----SCTTCSEEECCSSCCC
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCC-CCCcc-cc-CCCccCEEECCCCccCCc--hhhc-----ccCCCCEEECcCCcCC
Confidence 653 22 466666666666666666 33332 22 466666666666666543 1222 5666666666666666
Q ss_pred ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 432 GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 432 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4444 56666666666666666542 3456666666666666666543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=154.09 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=95.2
Q ss_pred CCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcC
Q 037539 339 LNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418 (622)
Q Consensus 339 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 418 (622)
+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..++ .+. .+++|++|++++|++++..+..+. .++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~-----~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNYN-PIS-GLSNLERLRIMGKDVTSDKIPNLS-----GLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCCG-GGT-TCTTCCEEEEECTTCBGGGSCCCT-----TCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccch-hhh-cCCCCCEEEeECCccCcccChhhc-----CCC
Confidence 344555555555554 223 344555555555555544 2222 222 455566666666655544444443 567
Q ss_pred CccEEECCCCcCCccchHHhhcccccceeecCCcc-ccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEC
Q 037539 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDL 497 (622)
Q Consensus 419 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 497 (622)
+|++|++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 77777777777776677778888888888888887 55 344 57788888888888888875 33 6778888888888
Q ss_pred cCCcCcc
Q 037539 498 SYNNLSG 504 (622)
Q Consensus 498 s~N~l~~ 504 (622)
++|++.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 8888753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-18 Score=156.12 Aligned_cols=134 Identities=24% Similarity=0.256 Sum_probs=112.8
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCCh-hhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPY-QFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
+++++++|.+ +.+|..+. +++++|++++|.+++..+. .+. .+++|++|+|++|++++..|..|..+++|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccc-----cCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 6677777777 66776543 3778888888887765553 243 688899999999999888888999999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
+|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|++.|.++..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999999999888888999999999999999999999999999999999999999999887643
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=166.79 Aligned_cols=151 Identities=25% Similarity=0.177 Sum_probs=72.5
Q ss_pred CcCccccCcccc-CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccC
Q 037539 302 NLLSGGLPDCWL-HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI 380 (622)
Q Consensus 302 n~l~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 380 (622)
|.+.+..+..+. .+++|++|++++|++++..+..|..+++|++|+|++|+++...+..|..+++|++|+|++|.+. .+
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~ 127 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VV 127 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EE
Confidence 333333333444 5555555555555555554455555555555555555555444445555555555555555552 22
Q ss_pred chhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccc--cceeecCCcccc
Q 037539 381 PTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVG--LIALNLSRNHLT 455 (622)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 455 (622)
+...+..+++|+.|+|++|++++..+..+.. ...+++|+.|+|++|++++..+..+..++. ++.|+|++|.+.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKD--GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhCCcccCCEEECCCCcCCeeCHHHhcC--cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2222224555555555555555333222210 013455555555555555444444444444 244555555443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=151.55 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=93.3
Q ss_pred cCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCch
Q 037539 72 AKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPK 151 (622)
Q Consensus 72 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 151 (622)
..+++|++|++++|.++.. + .+..+ ++|++|++++|.++. + ..+..+++|++|++++|.+++..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~---~l~~l-~~L~~L~l~~n~~~~--~-------~~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T---GIEYA-HNIKDLTINNIHATN--Y-------NPISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T---TGGGC-TTCSEEEEESCCCSC--C-------GGGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCccCh-H---HHhcC-CCCCEEEccCCCCCc--c-------hhhhcCCCCCEEEeECCccCcccCh
Confidence 4456666777776666632 2 35555 667777777765542 1 1235666777777777777665666
Q ss_pred hhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccC
Q 037539 152 FFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLS 231 (622)
Q Consensus 152 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 231 (622)
.++.+++|++|++++|.+++..+..+. .+++ |++|++++|...+.++.+..+++|++|++++|.+++. + .+.
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~-----~l~~-L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~-~-~l~ 178 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKIN-----TLPK-VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-R-GIE 178 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHT-----TCSS-CCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-T-TGG
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHh-----hCCC-CCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-H-Hhc
Confidence 667777777777777777665565533 3333 7777777776222334566667777777777776643 2 566
Q ss_pred CCCCCCEEEccCCCCc
Q 037539 232 QLSKLESLSLDGNSLR 247 (622)
Q Consensus 232 ~l~~L~~L~l~~n~l~ 247 (622)
.+++|++|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 6677777777777654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-17 Score=173.68 Aligned_cols=170 Identities=27% Similarity=0.340 Sum_probs=78.7
Q ss_pred CCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 314 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+ ..++ .+. .+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~-~l~-~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KDLS-SLK-DLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCT-TST-TCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CCCh-hhc-cCCCCCE
Confidence 344455555555554422 1 24445555555555555543222 44555555555555554 2232 222 3455555
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeC
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDL 473 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 473 (622)
|+|++|.+.+. + .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 114 L~Ls~N~l~~l-~-~l~-----~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISDI-N-GLV-----HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCCC-G-GGG-----GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred EEecCCCCCCC-c-ccc-----CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 55555554432 1 111 345555555555555432 344455555555555555543333 444555555555
Q ss_pred CCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 474 SRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 474 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
++|++++. + .+..+++|+.|++++|++.
T Consensus 183 s~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred cCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 55555432 2 3445555555555555544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=159.86 Aligned_cols=167 Identities=23% Similarity=0.334 Sum_probs=94.3
Q ss_pred CCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecC
Q 037539 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLK 397 (622)
Q Consensus 318 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 397 (622)
+..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+ ..++. + ..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l-~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI-SDLSP-L-KDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC-CCCGG-G-TTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc-CCChh-h-ccCCCCCEEECC
Confidence 333444444444221 2334445555555555554 222 344555555555555555 23332 2 245555555555
Q ss_pred CCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCc
Q 037539 398 SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 398 ~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+|++++..+. . . ++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|+
T Consensus 94 ~N~l~~l~~~--~-----~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 94 RNRLKNLNGI--P-----S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCSCCTTC--C-----C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred CCccCCcCcc--c-----c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence 5555532211 0 1 5566666666666642 2 466777777777777777653 256777777777777777
Q ss_pred cCccCCccccCCCCCCEEECcCCcCccc
Q 037539 478 FSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
+++. ..+..+++|+.|++++|++.+.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 7755 4577777788888888877644
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=158.30 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=135.5
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
.+..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555566655432 56788899999999999884 44 67889999999999999985543 8899999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
+|.+ ..+|... . ++|+.|++++|++++. + .+. .+++|+.|++++|++++. + .+..+++|++|++++|
T Consensus 94 ~N~l-~~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~-----~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNRL-KNLNGIP--S-ACLSRLFLDNNELRDT-D-SLI-----HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCC-SCCTTCC--C-SSCCEEECCSSCCSBS-G-GGT-----TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred CCcc-CCcCccc--c-CcccEEEccCCccCCC-h-hhc-----CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 9998 5565432 2 8999999999999864 2 233 799999999999999854 4 6889999999999999
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
.+++. ..+..+++|+.|++++|+++..
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99975 7788999999999999999855
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-17 Score=148.15 Aligned_cols=176 Identities=22% Similarity=0.229 Sum_probs=102.0
Q ss_pred cEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccE
Q 037539 343 WTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRC 422 (622)
Q Consensus 343 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 422 (622)
+++++++|.++ .+|..+. ++|++|++++|.+.+..+...+..+++|++|++++|++++..|..+. .+++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-----GASHIQE 82 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-----TCTTCCE
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-----CcccCCE
Confidence 34444444443 3333222 24555555555552222222233456666666666666655555544 5677777
Q ss_pred EECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCcc-ccCCCCCCEEECcCCc
Q 037539 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCS-LSQLSGLGVLDLSYNN 501 (622)
Q Consensus 423 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~ls~N~ 501 (622)
|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|++.+..+.. +. ..++...+.++.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~ 160 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGA 160 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGG
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCC
Confidence 777777777666667778888888888888888777888888888999999999888654321 11 112222344455
Q ss_pred CcccCCCCCcCCccCcccccCCcCCCCCC
Q 037539 502 LSGKIPSGTQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 502 l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 530 (622)
..|..|.. +.......+..+...|..+
T Consensus 161 ~~C~~P~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 161 ARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred CCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence 55555542 3333334444554555433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-17 Score=161.71 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=85.2
Q ss_pred ccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc----CCCCCCccccCCCCcc-EEEccCCcccccCchhH
Q 037539 310 DCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR----LTGKLPSPLRNFSQLR-VLDLEKNAIFGEIPTWI 384 (622)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~ 384 (622)
.+|.+|++|+.+++++|.+....+.+|..+.++..+....+. .......+|..+..|+ .+.+... +.++..+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~ 194 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEI 194 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHH
Confidence 445555666666666665555555555555555555443321 1222333455555555 4444332 2223322
Q ss_pred Hhh---cccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccc
Q 037539 385 GES---LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 385 ~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+.. ..+++.+.+.++-.. .-...+...+++|+.++|++|+++.....+|.++.+|+++++.+| ++...+.+
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~-----~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a 268 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDN-----ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV 268 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCH-----HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred hhcccCccccceEEEeeeecH-----HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence 211 233444444332111 000011113455555555555555444445555555555555554 44344445
Q ss_pred cCCCCCCC-EEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 462 IGELTSLD-FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 462 l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++.
T Consensus 269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 55555555 555555 444444455555555555555555554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-17 Score=180.24 Aligned_cols=193 Identities=24% Similarity=0.306 Sum_probs=123.6
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc
Q 037539 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA 375 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 375 (622)
.++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3444455544 55778899999999999999998 66666778999999999999999 888899999999999999999
Q ss_pred ccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc-ceeecCCccc
Q 037539 376 IFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL-IALNLSRNHL 454 (622)
Q Consensus 376 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l 454 (622)
+ ..+|..+. .+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.+++.+|..+..+... ..++|++|.+
T Consensus 282 l-~~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 L-TSLPAELG-SCFQLKYFYFFDNMVT-TLPWEFG-----NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp C-SSCCSSGG-GGTTCSEEECCSSCCC-CCCSSTT-----SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred C-CccChhhc-CCCCCCEEECCCCCCC-ccChhhh-----cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 9 58898877 7999999999999997 5565565 79999999999999999999888765432 3588999999
Q ss_pred cCCCccccCCCCCCCEEeCCCC--------ccCccCCccccCCCCCCEEECcCCcCccc
Q 037539 455 TGPITPKIGELTSLDFLDLSRN--------LFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505 (622)
Q Consensus 455 ~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 505 (622)
++.+|. .|+.|++++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 354 ~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp CCCCCC------C-----------------------------------------CCCGG
T ss_pred cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 987776 4556677777 34444444556666777788888887643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-18 Score=186.46 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=59.6
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccC-chhHHhhccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEI-PTWIGESLQN 390 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~l~~ 390 (622)
+..+++|+.|++++|+++ .+|..++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+.+.. |..+. .+++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPR 534 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTT
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCC
Confidence 555556666666666665 445555666666666666666653 34 5556666666666666663333 44444 4666
Q ss_pred ccEeecCCCcCcccCChhhhHhHhhhcCCccEEEC
Q 037539 391 LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDL 425 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L 425 (622)
|+.|++++|++++.++... .....+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~--~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQE--RLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTT--HHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHH--HHHHHCcccCccCC
Confidence 6666666666655444221 11224566666653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-17 Score=161.70 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=58.8
Q ss_pred CCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCcc-EEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR-VLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
+++|+.+++++|+++.....+|.++.+|++|++.+| +....+.+|.++++|+ .+++.+ .+ ..++...|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCE
Confidence 455666666666665555555666666666666655 4445555566666666 666655 33 4455555555666666
Q ss_pred eecCCCcCcccCChhhhHhHhhhcCCccEEE
Q 037539 394 LSLKSNKFHGNIPYQFENEYKSTLGLVRCLD 424 (622)
Q Consensus 394 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 424 (622)
+++++|+++...+..|. ++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~-----~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFG-----NGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTC-----TTCCCCEEE
T ss_pred EEeCCCccCccchhhhc-----CCcchhhhc
Confidence 66666666555444444 556666554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=145.58 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=123.1
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+++++++|.+ ..+|..+ .++|++|++++|.++ .+|..+. .+++|+.|+|++|.+++..+..|.++++|++
T Consensus 13 ~~l~~~~~~l-~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~-----~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI---PRDVTELYLDGNQFT-LVPKELS-----NYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCC-SSCCSCC---CTTCCEEECCSSCCC-SCCGGGG-----GCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCC-CcCCCCC---CCCCCEEECCCCcCc-hhHHHhh-----cccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 4677777776 5666554 257777777777776 4444443 6888888888888888777788999999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCC
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLEL 526 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 526 (622)
|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.|.++.. .+........
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~----~l~~~~~~~~--- 155 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ----WLSDWVKSEY--- 155 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH----HHHHHHHHSS---
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH----HHHHHHHhcc---
Confidence 999999999888888999999999999999999777778999999999999999999875532 2221111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 037539 527 CGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 527 c~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
..+....|..|...+|....+.
T Consensus 156 -~~~~~~~C~~P~~l~g~~l~~~ 177 (193)
T 2wfh_A 156 -KEPGIARCAGPGEMADKLLLTT 177 (193)
T ss_dssp -CCCSCCBEEESGGGTTCBTTTS
T ss_pred -CCCCCcCcCCchHHCCCCcccC
Confidence 1122346888887777665444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-18 Score=184.55 Aligned_cols=185 Identities=23% Similarity=0.252 Sum_probs=147.0
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCc-------------CCCCCCccccCCCCccEEE-ccCCcccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNR-------------LTGKLPSPLRNFSQLRVLD-LEKNAIFG 378 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~l~~l~~L~~L~-L~~n~i~~ 378 (622)
..++.|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 45677888888888887 667777888888888876664 4456667778888888888 666654 2
Q ss_pred cCchh------HHh-hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 379 EIPTW------IGE-SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 379 ~~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
.++.. +.. ....|+.|++++|.+++ +|. +. .+++|+.|+|++|.++ .+|..++.+++|+.|+|++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~-----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE-----QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-----GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cc-----ccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 23221 110 12368999999999986 443 44 7999999999999999 7888999999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEECcCCcCcccCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSI-PCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|..
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99996 56 8999999999999999999876 899999999999999999999776643
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=176.84 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=107.1
Q ss_pred eecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccE
Q 037539 217 LDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF 296 (622)
Q Consensus 217 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~ 296 (622)
+..|.+. ..+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.+.
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~---------------~l~~~~~~-l~~L~~L~Ls~N~l~---------- 260 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF---------------NISANIFK-YDFLTRLYLNGNSLT---------- 260 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS---------------CCCGGGGG-CCSCSCCBCTTSCCS----------
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC---------------CCChhhcC-CCCCCEEEeeCCcCc----------
Confidence 3344444 45666777788888888888776 45555553 346666666666554
Q ss_pred EeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcc
Q 037539 297 DDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376 (622)
Q Consensus 297 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i 376 (622)
.+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+
T Consensus 261 ----------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 261 ----------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred ----------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 56677888889999999999998 67888889999999999999987 6777799999999999999999
Q ss_pred cccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCC--------cCCccchHHhhcccccceee
Q 037539 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSN--------KLDGAIPEEIMDLVGLIALN 448 (622)
Q Consensus 377 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~ 448 (622)
.+.+|..+...-..+..+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 397 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTV 397 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----------C-------------------------------------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc-----------ccceeEeecccccccccCCccccccchhhcccccceee
Confidence 7777776653222334578888988876654 3456666666 23323333444555555666
Q ss_pred cCCcccc
Q 037539 449 LSRNHLT 455 (622)
Q Consensus 449 L~~n~l~ 455 (622)
+++|-+.
T Consensus 398 ls~Nil~ 404 (727)
T 4b8c_D 398 LSYNTLC 404 (727)
T ss_dssp ----CCC
T ss_pred eeccccc
Confidence 6666553
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=136.93 Aligned_cols=132 Identities=25% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCccEEEccCCccc-ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccc
Q 037539 364 SQLRVLDLEKNAIF-GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442 (622)
Q Consensus 364 ~~L~~L~L~~n~i~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 442 (622)
++|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+. .+++|++|++++|.+.+.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLP-----KLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCC-----CCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhc-----cCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 45555555555553 24544433 456666666666665543 2222 566777777777777765666667777
Q ss_pred ccceeecCCccccCCC-ccccCCCCCCCEEeCCCCccCccCC---ccccCCCCCCEEECcCCcCc
Q 037539 443 GLIALNLSRNHLTGPI-TPKIGELTSLDFLDLSRNLFSGSIP---CSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 443 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~N~l~ 503 (622)
+|++|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888888777532 2667778888888888888875544 46778888888888888776
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=135.73 Aligned_cols=134 Identities=23% Similarity=0.210 Sum_probs=103.8
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.+.++++++.+ ..+|..+ .++|+.|++++|++++..+..+. .+++|++|++++|.+++..+..|..+++|+
T Consensus 9 ~~~l~~~~~~l-~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI---PSSATRLELESNKLQSLPHGVFD-----KLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC---CTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEecCCCC-ccCCCCC---CCCCcEEEeCCCcccEeCHHHhc-----CcccccEEECCCCcceEeChhHccCCCccC
Confidence 35666666666 5555443 35677777777777655554443 577888888888888866666778899999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999999999877777788999999999999999977776678899999999999999987763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=132.99 Aligned_cols=86 Identities=31% Similarity=0.352 Sum_probs=59.5
Q ss_pred CCCCCEEEccCCccc-ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccE
Q 037539 315 FDRLFILNLANNRLS-GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~ 393 (622)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCE
Confidence 356788888888776 56666677777888888888887754 5677777778888877777444554433 4666666
Q ss_pred eecCCCcCcc
Q 037539 394 LSLKSNKFHG 403 (622)
Q Consensus 394 L~L~~n~l~~ 403 (622)
|++++|++++
T Consensus 100 L~Ls~N~l~~ 109 (168)
T 2ell_A 100 LNLSGNKLKD 109 (168)
T ss_dssp EECBSSSCCS
T ss_pred EeccCCccCc
Confidence 6666666653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=132.46 Aligned_cols=83 Identities=25% Similarity=0.246 Sum_probs=52.5
Q ss_pred hcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCC-CccccCCCCCCCEEeCCCCccCccCC---ccccCCCC
Q 037539 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGP-ITPKIGELTSLDFLDLSRNLFSGSIP---CSLSQLSG 491 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~ 491 (622)
.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 455566666666666655566666666666666666666642 23566667777777777777765544 45666777
Q ss_pred CCEEECc
Q 037539 492 LGVLDLS 498 (622)
Q Consensus 492 L~~L~ls 498 (622)
|+.||++
T Consensus 142 L~~L~l~ 148 (149)
T 2je0_A 142 LTYLDGY 148 (149)
T ss_dssp CCEETTB
T ss_pred cccccCC
Confidence 7777665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=128.28 Aligned_cols=126 Identities=23% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCEEEccCCccc-ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEe
Q 037539 316 DRLFILNLANNRLS-GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVL 394 (622)
Q Consensus 316 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 394 (622)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 56777777777776 55666666777777777777777644 5566677777777777776444544333 46666666
Q ss_pred ecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccch---HHhhcccccceeec
Q 037539 395 SLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIP---EEIMDLVGLIALNL 449 (622)
Q Consensus 395 ~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 449 (622)
++++|++++.. +..+. .+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-----KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-----GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHh-----hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666655321 11121 44455555555555543332 23444444444444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=143.42 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=132.7
Q ss_pred cCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchh
Q 037539 189 LEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDW 267 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 267 (622)
|+.+.+..+ ++..... |.++ +|+.+.+.. .++.+...+|..+++|+.+++.+|.++ .++..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~---------------~I~~~ 198 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT---------------KLPAS 198 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS---------------EECTT
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce---------------Eechh
Confidence 555555544 3333333 4443 466666654 455455566666777777777666665 33333
Q ss_pred HHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEee
Q 037539 268 FWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNL 347 (622)
Q Consensus 268 ~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 347 (622)
.+.. .+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+
T Consensus 199 aF~~-~~L~~l~lp~~--------------------l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 199 TFVY-AGIEEVLLPVT--------------------LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTTT-CCCSEEECCTT--------------------CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred hEee-cccCEEEeCCc--------------------hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 3332 35555554422 22234456667777777777654 44444555655 56777777
Q ss_pred eCCcCCCCCCccccCCCCccEEEccCCccc----ccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 348 HNNRLTGKLPSPLRNFSQLRVLDLEKNAIF----GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 348 s~n~i~~~~~~~l~~l~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
. +.++.....+|.+|++|+.+++.++.+. ..++...|.++++|+.+.
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~---------------------------- 306 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE---------------------------- 306 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC----------------------------
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE----------------------------
Confidence 3 3354455566777777777777666541 124444444444444444
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCC-CCCEEECcCCcC
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-GLGVLDLSYNNL 502 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l 502 (622)
+.+ .++.....+|.++.+|+.+.|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 307 -l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 -IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 442 243344455666666666666443 444445566666 677777776666655555666663 566666665543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-14 Score=143.66 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=143.9
Q ss_pred ccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHh
Q 037539 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 307 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
....+|.+|++|+.+++++|+++......|. ..+|+.+.+..+ +......+|.++++|+.+++..+ + ..++...|.
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~ 246 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFR 246 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-cCccccccc
Confidence 4456778888888888888888866666666 578888888754 66566778888888888888875 3 566677775
Q ss_pred hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC-----ccchHHhhcccccceeecCCccccCCCccc
Q 037539 387 SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD-----GAIPEEIMDLVGLIALNLSRNHLTGPITPK 461 (622)
Q Consensus 387 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 461 (622)
+ .+|+.+.+. +.++......|. .+++|+.+++.++.+. .....+|.+|++|+.+++.+ .++.....+
T Consensus 247 ~-~~L~~i~lp-~~i~~I~~~aF~-----~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 247 E-SGITTVKLP-NGVTNIASRAFY-----YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp T-CCCSEEEEE-TTCCEECTTTTT-----TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred c-CCccEEEeC-CCccEEChhHhh-----CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 4 788888884 445545555554 7888999998887664 45677899999999999994 577677789
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcc
Q 037539 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 462 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
|.++++|+.++|..| ++.....+|.++ +|+.+++++|....
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 999999999999665 776788899999 99999999998763
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=130.08 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=81.3
Q ss_pred EEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEE
Q 037539 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCL 423 (622)
Q Consensus 344 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 423 (622)
.++++++.++ .+|..+. ++|++|++++|.+ ..+|..+. .+++|++|++++|.+++..+..+. .+++|++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~-----~l~~L~~L 83 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQF-TLVPKELS-NYKHLTLIDLSNNRISTLSNQSFS-----NMTQLLTL 83 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCC-CSCCGGGG-GCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEE
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcC-chhHHHhh-cccCCCEEECCCCcCCEeCHhHcc-----CCCCCCEE
Confidence 4444444444 2332221 3455555555555 34553332 455666666666666554444444 56777777
Q ss_pred ECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCc
Q 037539 424 DLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSG 480 (622)
Q Consensus 424 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 480 (622)
+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777777776666777888888888888888886666678888888888888888864
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=140.13 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=23.9
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCC
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 474 (622)
+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++++|+.+++.
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 444444444322 33233334444445555444433 333333444445555555443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=142.47 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=139.3
Q ss_pred ccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCc
Q 037539 182 FGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGI 260 (622)
Q Consensus 182 l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 260 (622)
|..+.+ |+.+.+.++.. ..... |.++.+|+.+.+..+ ++.+...+|..+..|+.+.+..+...
T Consensus 158 F~~c~~-L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~------------- 221 (394)
T 4fs7_A 158 FATCES-LEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY------------- 221 (394)
T ss_dssp TTTCTT-CCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-------------
T ss_pred hcccCC-CcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-------------
Confidence 334444 66666654322 12222 556666666666544 33344455666666666555444321
Q ss_pred ccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCC
Q 037539 261 SDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340 (622)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 340 (622)
+.+..+.. ..|+.+.+... +......+|..+..++.+.+..+... .....|..+.
T Consensus 222 ---i~~~~~~~-~~l~~i~ip~~--------------------~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 222 ---LGDFALSK-TGVKNIIIPDS--------------------FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp ---ECTTTTTT-CCCCEEEECTT--------------------CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred ---eehhhccc-CCCceEEECCC--------------------ceecccccccccccceeEEcCCCcce-eecccccccc
Confidence 11111111 24444444322 11233456677778888887766443 5556677777
Q ss_pred CccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 341 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
.++.+......+. ...|..+.+|+.+.+..+ + ..++...|.++.+|+.+++.++ ++......|. ++.+|
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~c~~L 345 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-----GCTSL 345 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-----TCTTC
T ss_pred ccceeccCceeec---cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-----CCCCC
Confidence 8888777665432 346777888888888765 3 5666666767888888888644 5444444444 78888
Q ss_pred cEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 421 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.+++..+ ++.....+|.++.+|+.+++..+ +. .+...|.++++|+.+
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88888766 66566678888888988888655 33 334567777777654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=128.49 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=90.0
Q ss_pred ccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhh
Q 037539 360 LRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439 (622)
Q Consensus 360 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 439 (622)
+..+++|++|++++|.+ ..++. +....++|++|++++|.+++. ..+. .+++|+.|++++|.+++..+..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~-----~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFP-----LLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCC-----CCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc--cccc-----cCCCCCEEECCCCcccccCcchhh
Confidence 44556666666666666 34443 232233667777777766643 1222 577777778887777755445557
Q ss_pred cccccceeecCCccccCCCcc--ccCCCCCCCEEeCCCCccCccCCcc----ccCCCCCCEEECcCCcCcc
Q 037539 440 DLVGLIALNLSRNHLTGPITP--KIGELTSLDFLDLSRNLFSGSIPCS----LSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~ls~N~l~~ 504 (622)
.+++|++|++++|.++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|....
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7888888888888886 3444 6778888888888888887 44553 7788888888888887653
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=124.25 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=52.8
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEEC
Confidence 445555555555444334444455555555555555444444444555555555555555 2333332224455555555
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 433 (622)
++|++++..+..+. .+++|++|++++|++.+.
T Consensus 108 ~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhc-----CCcccCEEEecCCCeecc
Confidence 55555433332222 355555555555555543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=141.51 Aligned_cols=132 Identities=26% Similarity=0.270 Sum_probs=85.0
Q ss_pred cccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHh
Q 037539 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEI 438 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 438 (622)
.+..+++|++|++++|.+ ..+| .+. .+++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~-----~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SLS-GMENLRILSLGRNLIK-KIENLDA-----VADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHH-----HHHHCSEEEEEEEECCC-HH-HH
T ss_pred HHhcCCCCCEEECCCCCC-cccc-ccc-cCCCCCEEECCCCCcc-cccchhh-----cCCcCCEEECcCCcCCc-CC-cc
Confidence 556666666666666666 3355 333 5666666666666665 3333322 45667777777777764 34 56
Q ss_pred hcccccceeecCCccccCCCc-cccCCCCCCCEEeCCCCccCccCCcc----------ccCCCCCCEEECcCCcCc
Q 037539 439 MDLVGLIALNLSRNHLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPCS----------LSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~ls~N~l~ 503 (622)
..+++|+.|++++|.+++..+ ..+..+++|++|++++|++++..|.. +..+++|+.|| +|+++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777788888777774332 46777788888888888777655542 67788888876 66654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=124.64 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=77.2
Q ss_pred cccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccc
Q 037539 311 CWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN 390 (622)
Q Consensus 311 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 390 (622)
.+..+.+|+.|++++|+++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+ ..+|..++..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc-cccCcchhhcCCC
Confidence 34566677777777777773 343222233777777777777643 4666777777777777777 4455554445666
Q ss_pred ccEeecCCCcCcccCC-hhhhHhHhhhcCCccEEECCCCcCCccchH----HhhcccccceeecCCccc
Q 037539 391 LIVLSLKSNKFHGNIP-YQFENEYKSTLGLVRCLDLSSNKLDGAIPE----EIMDLVGLIALNLSRNHL 454 (622)
Q Consensus 391 L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l 454 (622)
|++|++++|++....+ ..+. .+++|+.|++++|++. ..|. .+..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~-----~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLA-----SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGG-----GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhh-----cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777666642221 0222 4555555555555555 2232 245555555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-15 Score=141.41 Aligned_cols=156 Identities=22% Similarity=0.239 Sum_probs=111.4
Q ss_pred ccCCCCCCEEEccCCcccccCCC------ccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHH
Q 037539 312 WLHFDRLFILNLANNRLSGKIPD------SMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 385 (622)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+ ..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-CSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-ccccchhh
Confidence 33445566666666666655554 67777888888888888874 55 777788888888888887 56776554
Q ss_pred hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccch-HHhhcccccceeecCCccccCCCcc----
Q 037539 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIP-EEIMDLVGLIALNLSRNHLTGPITP---- 460 (622)
Q Consensus 386 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---- 460 (622)
.+++|++|++++|++++. | .+ ..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|.
T Consensus 91 -~~~~L~~L~L~~N~l~~l-~-~~-----~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 91 -VADTLEELWISYNQIASL-S-GI-----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp -HHHHCSEEEEEEEECCCH-H-HH-----HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred -cCCcCCEEECcCCcCCcC-C-cc-----ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 578888888888888752 2 22 267888888888888874332 4678888888888888888765443
Q ss_pred ------ccCCCCCCCEEeCCCCccCc
Q 037539 461 ------KIGELTSLDFLDLSRNLFSG 480 (622)
Q Consensus 461 ------~l~~l~~L~~L~Ls~n~l~~ 480 (622)
.+..+++|+.|| +|.++.
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccCH
Confidence 267788888887 676663
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-15 Score=148.57 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCccEEeeeCCcCCCCCCcc----cc-CCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHh
Q 037539 340 NNIWTLNLHNNRLTGKLPSP----LR-NFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK 414 (622)
Q Consensus 340 ~~L~~L~Ls~n~i~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 414 (622)
+.|+.|++++|.++...... +. ..++|++|+|++|.+.+.....+...+++|+.|+|++|.+++.....+.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 44556666666654322222 22 22577777777777744444444445667788888888776555554443333
Q ss_pred hhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCC----ccccCCCCCCCEEeCCCCccCcc----C
Q 037539 415 STLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPI----TPKIGELTSLDFLDLSRNLFSGS----I 482 (622)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~----~ 482 (622)
...+.|++|+|++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3467788888888877642 3444566778888888888876533 44566677888888888888753 3
Q ss_pred CccccCCCCCCEEECcCCcCcc
Q 037539 483 PCSLSQLSGLGVLDLSYNNLSG 504 (622)
Q Consensus 483 ~~~l~~l~~L~~L~ls~N~l~~ 504 (622)
+..+...++|++|++++|++..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3344566788888888888763
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=121.44 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=91.3
Q ss_pred cccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
..+.+++++|.++. +|..+ .+.++.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 34567777777664 33222 36678888888888877788888999999999999999977777889999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPS 508 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 508 (622)
+|+|++|++++..+..|..+++|++|++++|++.|.++.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999987777899999999999999999988763
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-13 Score=119.15 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=85.1
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEE
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFL 471 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 471 (622)
+.+++++|.++ .+|..+ .+.|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~-------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI-------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSCC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCCc-------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 55666666664 333322 3567788888888877777788888999999999999987666678889999999
Q ss_pred eCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 472 DLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 472 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
+|++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999997766678899999999999999987755
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-14 Score=146.01 Aligned_cols=187 Identities=21% Similarity=0.122 Sum_probs=117.3
Q ss_pred CCCCEEEccCCcccccCCCcc----C-CCCCccEEeeeCCcCCCCCCccc-cCCCCccEEEccCCcccccCchhHHh---
Q 037539 316 DRLFILNLANNRLSGKIPDSM----G-FLNNIWTLNLHNNRLTGKLPSPL-RNFSQLRVLDLEKNAIFGEIPTWIGE--- 386 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~----~-~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~--- 386 (622)
+.|+.|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.+.+.....+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777887777764332222 2 23578888888887764322222 23567888888888874443333332
Q ss_pred -hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc----hHHhhcccccceeecCCccccCCCc--
Q 037539 387 -SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI----PEEIMDLVGLIALNLSRNHLTGPIT-- 459 (622)
Q Consensus 387 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~-- 459 (622)
..++|++|+|++|.++......+...+ ...++|++|+|++|.+.+.. +..+...++|++|+|++|.+++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246788888888888754443333222 26788888999888887533 5566777889999999998875433
Q ss_pred --cccCCCCCCCEEeCCCCccCccCCccccCCC-----CCCEEE--CcCCcCc
Q 037539 460 --PKIGELTSLDFLDLSRNLFSGSIPCSLSQLS-----GLGVLD--LSYNNLS 503 (622)
Q Consensus 460 --~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-----~L~~L~--ls~N~l~ 503 (622)
..+...++|++|+|++|.|++.....+..+. .|+.+. +.+|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445678899999999988865544443332 156665 5566554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-11 Score=122.55 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=70.3
Q ss_pred CccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchH
Q 037539 357 PSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436 (622)
Q Consensus 357 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 436 (622)
..+|..++.|+.+.+..+. ..+....+.++++|+.+.+. +.++......|. ++.+|+.+++..+ ++.....
T Consensus 258 ~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~-----~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFA-----GCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTT-----TCTTCCEEECCTT-CCEECTT
T ss_pred cceeeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeec-----CCCCcCEEEeCCc-ccEehHh
Confidence 3456666666666665543 23444444456666666664 233333333333 5666666666543 4434455
Q ss_pred HhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcC
Q 037539 437 EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 437 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 502 (622)
+|.+|.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+....+|+.+.+..+.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6777777777777544 554555667777777777777665431 3455566677666655443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=114.52 Aligned_cols=108 Identities=25% Similarity=0.243 Sum_probs=87.5
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.+++++++|.+ ..+|..+ .++|++|++++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|+
T Consensus 11 ~~~l~~s~n~l-~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI---PTTTQVLYLYDNQITKLEPGVFD-----RLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCc-CccCccC---CCCCcEEEcCCCcCCccChhhhc-----CcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 46777777777 5677654 36778888888888877676665 688888999999988877777788999999
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccCccC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 482 (622)
+|+|++|++++..+..|..+++|++|+|++|++....
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999999777778999999999999999998543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=119.89 Aligned_cols=328 Identities=13% Similarity=0.152 Sum_probs=153.4
Q ss_pred hhcCCC-CCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC---CCCCCCchhhhcccccCCCccccEEEeecccC
Q 037539 70 VVAKLH-SLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN---LPSSSVYPWLLNLKAFQHMVSLKSLYLSDSEL 145 (622)
Q Consensus 70 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~---l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l 145 (622)
+|.+++ .|+.+.+..+ ++.... .++.++ ++|+.+.++.+. ++. ..-.+|..+.+|+.+.+..+ +
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~--~AF~~C-~~L~~i~~~~n~p~~l~~-------Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGS--NAFYNC-TSLKRVTIQDNKPSCVKK-------IGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECT--TTTTTC-TTCCEEEEGGGCCCCCCE-------ECTTTTTTCTTCCBCGGGTT-C
T ss_pred hccCCCCcCEEEEECCC-eeEEhH--HHhhCC-ccCceEeecCCCCCeeeE-------echhhchhcccceeeccCCc-c
Confidence 566653 4777776543 444433 455566 677777766553 221 22235566666666665543 3
Q ss_pred CCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCc
Q 037539 146 EGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNG 224 (622)
Q Consensus 146 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~ 224 (622)
+.....+|..+.+|+.+.+..+ +....... |..+.. |+.+.+..+ +...... |.. ..|+.+.+..+.. .
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~-----F~~c~~-L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~ 195 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG-VTSVADGM-----FSYCYS-LHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-R 195 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTT-CCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-E
T ss_pred ceehhhhhhhhcccccccccce-eeeecccc-----eecccc-cccccccce-eeEeccccccc-cceeEEEECCccc-c
Confidence 3344455666666666666533 22222233 333444 666666543 2222222 332 4566666554322 2
Q ss_pred cCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcC
Q 037539 225 TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLL 304 (622)
Q Consensus 225 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l 304 (622)
....+|..+..++............. ..++........-
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-------------------------- 234 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYPAID---------------NVLYEKSANGDYA-------------------------- 234 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSCBSS---------------SCEEEECTTSCEE--------------------------
T ss_pred cccchhhhccccceeccccccccccc---------------ceeeccccccccc--------------------------
Confidence 34445555566655555444332110 0000000000000
Q ss_pred ccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhH
Q 037539 305 SGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWI 384 (622)
Q Consensus 305 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 384 (622)
...+.....+..+.+.. .++.....+|..+..|+.+.+..+... ....+|.++++|+.+.+.. .+ ..++...
T Consensus 235 ----~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i-~~I~~~a 306 (394)
T 4gt6_A 235 ----LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RI-TELPESV 306 (394)
T ss_dssp ----EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TC-CEECTTT
T ss_pred ----ccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cc-cccCcee
Confidence 00011112223333322 122233344555555555555443322 4445555666666666643 22 4455555
Q ss_pred HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCC
Q 037539 385 GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGE 464 (622)
Q Consensus 385 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 464 (622)
|.++.+|+.+.+..+ ++......|. ++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... ...+..
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~-----~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~ 376 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFA-----GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAIST 376 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBC
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhh-----CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhc
Confidence 555666666666543 3323333333 5666777766543 44455667777788888887776543 245666
Q ss_pred CCCCCEEeCCCCcc
Q 037539 465 LTSLDFLDLSRNLF 478 (622)
Q Consensus 465 l~~L~~L~Ls~n~l 478 (622)
..+|+.+.+..+.+
T Consensus 377 ~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 377 DSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCC----------
T ss_pred cCCCCEEEeCCCCE
Confidence 77777777766654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=113.37 Aligned_cols=106 Identities=24% Similarity=0.256 Sum_probs=83.2
Q ss_pred cEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce
Q 037539 367 RVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA 446 (622)
Q Consensus 367 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 446 (622)
+.+++++|.+ +.+|..+. ++|++|++++|++.+..|..+. .+++|+.|+|++|++++..+..|..+++|++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP---TDKQRLWLNNNQITKLEPGVFD-----HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC---TTCSEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCC-CccCCCcC---CCCcEEEeCCCCccccCHHHhc-----CCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 5677777776 66666542 6777777777777766666655 6888888888888888666666788999999
Q ss_pred eecCCccccCCCccccCCCCCCCEEeCCCCccCcc
Q 037539 447 LNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481 (622)
Q Consensus 447 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 481 (622)
|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999999876666789999999999999998843
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.4e-11 Score=118.98 Aligned_cols=103 Identities=23% Similarity=0.218 Sum_probs=52.9
Q ss_pred EEEccCC-cccccCchhHHhhcccccEeecCC-CcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccc
Q 037539 368 VLDLEKN-AIFGEIPTWIGESLQNLIVLSLKS-NKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445 (622)
Q Consensus 368 ~L~L~~n-~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 445 (622)
.++++++ .+ ..+|. +. .+++|+.|+|++ |.+.+..+..+. .+++|+.|+|++|++++..|..|.++++|+
T Consensus 12 ~v~~~~~n~l-~~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-LP-GAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCC-TTTTT-SC-SCSCCSEEECCSCSSCCEECGGGSC-----SCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCC-CccCC-CC-CCCCeeEEEccCCCCCCCcChhHhc-----cccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 3455555 55 44555 33 455556666654 555544444443 455555555555555555555555555555
Q ss_pred eeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 446 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
.|+|++|++++..+..|..++ |+.|+|++|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555555555543333444333 555555555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=117.40 Aligned_cols=108 Identities=19% Similarity=0.074 Sum_probs=94.3
Q ss_pred cEeecCCC-cCcccCChhhhHhHhhhcCCccEEECCC-CcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCC
Q 037539 392 IVLSLKSN-KFHGNIPYQFENEYKSTLGLVRCLDLSS-NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLD 469 (622)
Q Consensus 392 ~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 469 (622)
..++.+++ .++. +|. +. .+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~-----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LP-----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SC-----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cCC-CC-----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 35688888 7875 554 54 688999999996 999988888999999999999999999998889999999999
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 470 FLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 470 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
.|+|++|++++..+..+..++ |+.|++++|++.|.++
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 999999999977777777776 9999999999998755
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=103.65 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=71.9
Q ss_pred CccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhH
Q 037539 334 DSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEY 413 (622)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 413 (622)
..+....+|+.+.+..+ +......+|.++..|+.+.+..+ + ..+....+.++.+|+.+.+..+ +.......+.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~--- 283 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS--- 283 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTT---
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccc---
Confidence 34444555555555433 22233445555556666655544 2 3344444445555555555432 2222222222
Q ss_pred hhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 037539 414 KSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQL 489 (622)
Q Consensus 414 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 489 (622)
.+.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+ ++.+...+|.++
T Consensus 284 --~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 284 --GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp --TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred --cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 4555666666555555444555666666666666543 44334455666666666666443 443444445444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=101.92 Aligned_cols=294 Identities=11% Similarity=0.052 Sum_probs=173.8
Q ss_pred cccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-
Q 037539 127 KAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH- 205 (622)
Q Consensus 127 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~- 205 (622)
.+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+ |... +|+.+.+..+- ......
T Consensus 63 ~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a-----F~~~--~L~~i~lp~~~-~~i~~~~ 131 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV-----FQGT--DLDDFEFPGAT-TEIGNYI 131 (379)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT-----TTTC--CCSEEECCTTC-CEECTTT
T ss_pred HHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce-----eccC--CcccccCCCcc-ccccccc
Confidence 35667777777777543 554555566665 5666655433 33333333 2222 37777776542 222222
Q ss_pred CCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcC
Q 037539 206 LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHF 285 (622)
Q Consensus 206 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 285 (622)
|.+. +++.+.+..+ ++.+...+|..+..++...+..+.......... .........
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------- 187 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------------LYNKNKTIL------- 187 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------------EEETTSSEE-------
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce---------------eccccccee-------
Confidence 4443 4555555433 333445566777777777766554321110000 000000000
Q ss_pred cccCCC-CcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCC
Q 037539 286 RGKLPD-LSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFS 364 (622)
Q Consensus 286 ~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 364 (622)
...+. ..+..+.+... ........+..+..|+.+.+..+ +.......|..+..|+.+.+..+ ++.....+|.++.
T Consensus 188 -~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 188 -ESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp -EECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred -ccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee
Confidence 00000 02222222221 12234456667788888888655 44355567788889999988765 5556667888899
Q ss_pred CccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc
Q 037539 365 QLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL 444 (622)
Q Consensus 365 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 444 (622)
+|+.+.+..+ + ..++...|.++++|+.+.+.++.++......|. ++.+|+.++|..+ ++.....+|.++.+|
T Consensus 264 ~l~~i~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~-----~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 264 ALKTLNFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM-----DCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TCCEEEECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTT-----TCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred hhcccccccc-c-eeccccccccccccccccccccccceehhhhhc-----CCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 9999998765 3 567777777889999999988887766666665 7899999999754 665667789999999
Q ss_pred ceeecCCccccCCCccccCCCCCC
Q 037539 445 IALNLSRNHLTGPITPKIGELTSL 468 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L 468 (622)
+++.+..+ ++.....+|.++..+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CEEEECCc-cCEEchhHhhCCCCC
Confidence 99999765 554556677766433
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=113.67 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=110.4
Q ss_pred ccCCCCCCEEEccCCccc---------ccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCch
Q 037539 312 WLHFDRLFILNLANNRLS---------GKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 382 (622)
...+++|+.|.+...... +.+...+..+|+|+.|.+++|.-. .++. +. +++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445678888877654321 112233456788888888887322 2222 33 78889999888877443333
Q ss_pred hHHh-hcccccEeecCC--CcCcccC-ChhhhHhHh-hhcCCccEEECCCCcCCccchHHhh---cccccceeecCCccc
Q 037539 383 WIGE-SLQNLIVLSLKS--NKFHGNI-PYQFENEYK-STLGLVRCLDLSSNKLDGAIPEEIM---DLVGLIALNLSRNHL 454 (622)
Q Consensus 383 ~~~~-~l~~L~~L~L~~--n~l~~~~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l 454 (622)
.+.. .+|+|+.|+|+. +...+.. ...+..... ..+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 3331 478888888753 2221111 111111111 1478888888888888754444443 477888888888888
Q ss_pred cCCC----ccccCCCCCCCEEeCCCCccCccCCccccC-CCCCCEEECcCCc
Q 037539 455 TGPI----TPKIGELTSLDFLDLSRNLFSGSIPCSLSQ-LSGLGVLDLSYNN 501 (622)
Q Consensus 455 ~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~ls~N~ 501 (622)
++.. +..+..+++|+.|+|++|.++......+.. + ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7543 233345688888888888877544333433 2 3557777765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-09 Score=105.99 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=50.8
Q ss_pred CCCCCEEEccCCcccccCCCccC--CCCCccEEeeeCC--cCCCC-----CCccc--cCCCCccEEEccCCcccccCchh
Q 037539 315 FDRLFILNLANNRLSGKIPDSMG--FLNNIWTLNLHNN--RLTGK-----LPSPL--RNFSQLRVLDLEKNAIFGEIPTW 383 (622)
Q Consensus 315 ~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n--~i~~~-----~~~~l--~~l~~L~~L~L~~n~i~~~~~~~ 383 (622)
+++|++|++..|.++......+. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45566666665555433222222 4556666665421 11100 00111 13556666666666553333322
Q ss_pred HHh--hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCc
Q 037539 384 IGE--SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDG 432 (622)
Q Consensus 384 ~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 432 (622)
+++ .+++|++|+|+.|.+.+..+..+.... ..+++|+.|++++|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCH
Confidence 321 245555555555555543322221111 134555555555555443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-08 Score=92.69 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=43.9
Q ss_pred cccCCCCccEEEccCC-cccccCchhHHh---hcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc-
Q 037539 359 PLRNFSQLRVLDLEKN-AIFGEIPTWIGE---SLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA- 433 (622)
Q Consensus 359 ~l~~l~~L~~L~L~~n-~i~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~- 433 (622)
.+...++|++|+|++| .+.......+.. ..++|++|+|++|.+.......+...+. ..+.|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence 4445666666666666 653322222211 2345666666666555433333322221 344555555555555432
Q ss_pred ---chHHhhcccccceeec--CCcccc
Q 037539 434 ---IPEEIMDLVGLIALNL--SRNHLT 455 (622)
Q Consensus 434 ---~~~~~~~l~~L~~L~L--~~n~l~ 455 (622)
+...+...++|++|+| ++|.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 1223333444444444 444444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-08 Score=92.41 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCCCccEEeeeCC-cCCCC----CCccccCCCCccEEEccCCcccccCchhHHh---hcccccEeecCCCcCcccCChh
Q 037539 337 GFLNNIWTLNLHNN-RLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE---SLQNLIVLSLKSNKFHGNIPYQ 408 (622)
Q Consensus 337 ~~l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~ 408 (622)
...+.|++|+|++| .+... +...+...++|++|+|++|.+.+.....+.+ ..++|++|+|++|.+.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34445555555554 44321 1223334445555555555542221111111 2234555555555544333222
Q ss_pred hhHhHhhhcCCccEEEC--CCCcCC
Q 037539 409 FENEYKSTLGLVRCLDL--SSNKLD 431 (622)
Q Consensus 409 ~~~~~~~~l~~L~~L~L--~~n~l~ 431 (622)
+.... ...+.|++|+| ++|.+.
T Consensus 113 l~~~L-~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEAL-QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred HHHHH-HhCCCceEEEecCCCCCCC
Confidence 22111 13344555555 445544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=90.23 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=50.1
Q ss_pred hcCCccEEECCCCcCCc--cchHHhhcccccceeecCCccccCCCccccCCCC--CCCEEeCCCCccCccCCc-------
Q 037539 416 TLGLVRCLDLSSNKLDG--AIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT--SLDFLDLSRNLFSGSIPC------- 484 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~------- 484 (622)
.++.|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|++.+..|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56677777777777765 3345566777777777777777653 2233333 777777777777654442
Q ss_pred cccCCCCCCEEE
Q 037539 485 SLSQLSGLGVLD 496 (622)
Q Consensus 485 ~l~~l~~L~~L~ 496 (622)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 255667777665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-07 Score=81.66 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=5.5
Q ss_pred CCCccccEEEeecc
Q 037539 130 QHMVSLKSLYLSDS 143 (622)
Q Consensus 130 ~~l~~L~~L~L~~n 143 (622)
..+++|++|+|++|
T Consensus 82 ~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 82 EGLQYVEKIRLCKC 95 (176)
T ss_dssp TTCSCCCEEEEESC
T ss_pred cCCCCCCEEEeCCC
Confidence 33334444444433
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.2e-07 Score=78.69 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=47.0
Q ss_pred CCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCC-CCCCCCchhhhcccccCCC----ccccEEEeeccc-CCCC
Q 037539 75 HSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNN-LPSSSVYPWLLNLKAFQHM----VSLKSLYLSDSE-LEGG 148 (622)
Q Consensus 75 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~ 148 (622)
.+|++||+++|.+++... ..+..+ ++|++|+|++|. +++ ..+..++.+ ++|++|++++|. +++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL--~~L~~~-~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF--DHMEGL-QYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGG--GGGTTC-SCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHH--HHhcCC-CCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 356666666666655433 445555 666666666663 444 223333432 356666666653 5554
Q ss_pred CchhhcCCccCcEeEeecCC
Q 037539 149 IPKFFGNMCSLKKLRLSYNK 168 (622)
Q Consensus 149 ~~~~l~~l~~L~~L~L~~n~ 168 (622)
.-..+..+++|+.|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 44455566666666666653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.15 E-value=5.9e-07 Score=85.55 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=63.6
Q ss_pred EECCCCcCC---ccchHHhhcccccceeecCCccccC--CCccccCCCCCCCEEeCCCCccCccCCccccCCC--CCCEE
Q 037539 423 LDLSSNKLD---GAIPEEIMDLVGLIALNLSRNHLTG--PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLS--GLGVL 495 (622)
Q Consensus 423 L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L 495 (622)
++++.|... ..+.....++++|++|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 556666432 1222233578999999999999997 3446677899999999999999965 2344444 89999
Q ss_pred ECcCCcCcccCCC
Q 037539 496 DLSYNNLSGKIPS 508 (622)
Q Consensus 496 ~ls~N~l~~~~p~ 508 (622)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987774
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=72.55 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.5
Q ss_pred cccEeecCCCcCc
Q 037539 390 NLIVLSLKSNKFH 402 (622)
Q Consensus 390 ~L~~L~L~~n~l~ 402 (622)
.|+.|+|++|.+.
T Consensus 71 ~L~~L~L~~n~ig 83 (197)
T 1pgv_A 71 HIEKFSLANTAIS 83 (197)
T ss_dssp CCCEEECTTSCCB
T ss_pred CcCEEEccCCCCC
Confidence 3444444444443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-05 Score=70.56 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=82.8
Q ss_pred cccccEeecCCC-cCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----chHHhhcccccceeecCCccccCCCc---
Q 037539 388 LQNLIVLSLKSN-KFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPIT--- 459 (622)
Q Consensus 388 l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--- 459 (622)
-+.|+.|+|++| .+.......+...+. .-..|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|++...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 457888888875 666555444444333 568899999999999753 45566678999999999999985433
Q ss_pred -cccCCCCCCCEEeCCCCc---cCcc----CCccccCCCCCCEEECcCCcC
Q 037539 460 -PKIGELTSLDFLDLSRNL---FSGS----IPCSLSQLSGLGVLDLSYNNL 502 (622)
Q Consensus 460 -~~l~~l~~L~~L~Ls~n~---l~~~----~~~~l~~l~~L~~L~ls~N~l 502 (622)
+.+..-+.|++|+|++|. +... +.+.+..-+.|++|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 456667889999998763 3322 344566778999999988764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=61.63 Aligned_cols=97 Identities=15% Similarity=0.049 Sum_probs=63.7
Q ss_pred ceeecCCcccc-CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCC
Q 037539 445 IALNLSRNHLT-GPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGN 523 (622)
Q Consensus 445 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n 523 (622)
..++.+++.++ ..+|..+ -++|++|+|++|+|+...+..|..+++|+.|+|++|++.+.+.. ..|........
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l----~~l~~wl~~~~ 84 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL----VPLRAWLAGRP 84 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG----HHHHHHHHTSS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc----HHHHHHHHhCc
Confidence 36778888876 2455433 24799999999999988888899999999999999999987442 22222111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037539 524 LELCGLPLANMCLDEESTPGPGTDDD 549 (622)
Q Consensus 524 ~~lc~~~~~~~C~~~~~~~~~~~~~~ 549 (622)
... ......|..|...+|....+.
T Consensus 85 ~~~--~~~~~~C~~P~~l~g~~l~~l 108 (130)
T 3rfe_A 85 ERA--PYRDLRCVAPPALRGRLLPYL 108 (130)
T ss_dssp CSG--GGTTCBCCBSTTTTTCBGGGC
T ss_pred ccc--cccCcEeCcChHHcCCCcccC
Confidence 000 022457888887777655443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0055 Score=51.18 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=40.5
Q ss_pred EEECCCCcCC-ccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 422 CLDLSSNKLD-GAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 422 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
.++.++++++ ..+|..+ -++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6677777775 2444322 136888888888888766777888888888888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 622 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.004 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.0 bits (219), Expect = 5e-20
Identities = 72/266 (27%), Positives = 111/266 (41%), Gaps = 15/266 (5%)
Query: 274 KLSYLNLSNNHFRGKLPDLS-------LRFDDLSSNL-LSGGLPDCWLHFDRLFILNLAN 325
+++ L+LS + P S L F + L G +P +L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
+SG IPD + + + TL+ N L+G LP + + L + + N I G IP G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 386 ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLI 445
+ +++ N+ G IP F N S + +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 446 ALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
+ K+G +L+ LDL N G++P L+QL L L++S+NNL G+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 506 IPSGTQLQSFNASVYAGNLELCGLPL 531
IP G LQ F+ S YA N LCG PL
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.6 bits (140), Expect = 6e-10
Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 23/282 (8%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE-LEGGIPKFFGNMCSL 159
+ + LDLS NLP P + ++ L LY+ L G IP + L
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIP-----SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 160 KKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDV 219
L +++ +SG + + ++ + P + +L + D
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLD-----FSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 220 NCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLN 279
N ++G I S SKL + + + +L+ N
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISR-----------NRLTGKIPPTFANLNLAFVDLSRN 207
Query: 280 LSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFL 339
+ + L L+L NNR+ G +P + L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 340 NNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIP 381
+ +LN+ N L G++P N + V N P
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 68/336 (20%), Positives = 103/336 (30%), Gaps = 73/336 (21%)
Query: 154 GNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLE 213
+ L LS L
Sbjct: 47 TQTYRVNNLDLSGLNLPK------------------------------------------ 64
Query: 214 AWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSN 273
I SL+ L L L + G + + +I
Sbjct: 65 ---------PYPIPSSLANLPYLNFLYIGGINNLVGPIP---------PAIAKLTQLHYL 106
Query: 274 KLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP 333
+++ N+S +L D S N LSG LP L + NR+SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 334 DSMGFLNN-IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392
DS G + ++ + NRLTGK+P N + V + + I
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452
L+ S F +N DL +N++ G +P+ + L L +LN+S N
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL--------DLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIP---CS 485
+L G I P+ G L D + N P C+
Sbjct: 279 NLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPACT 313
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 87.4 bits (215), Expect = 5e-19
Identities = 68/399 (17%), Positives = 130/399 (32%), Gaps = 59/399 (14%)
Query: 102 TSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKK 161
+ TL + S + +++ +L + S+++L P N+ L
Sbjct: 44 DQVTTLQADRLGIKS---------IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92
Query: 162 LRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNC 221
+ ++ N+++ G + + P+ +L + LE S ++
Sbjct: 93 ILMNNNQIADITPLANLTNLTGLTL------FNNQITDIDPLKNLTNLNRLELSSNTISD 146
Query: 222 LNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLS 281
++ + Q + D L ++ S L+N L +
Sbjct: 147 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL-ESLIAT 205
Query: 282 NNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNN 341
NN P L L+L N+L ++ L N
Sbjct: 206 NNQISDITP---------------------LGILTNLDELSLNGNQLKD--IGTLASLTN 242
Query: 342 IWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401
+ L+L NN+++ +PL ++L L L N I P +L N
Sbjct: 243 LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTN----------L 290
Query: 402 HGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPK 461
N + S L + L L N + P + L L L + N ++
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SS 346
Query: 462 IGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYN 500
+ LT++++L N S P L+ L+ + L L+
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.9 bits (162), Expect = 2e-12
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 23/199 (11%)
Query: 177 IQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236
I +++ ++ +L+ L L N I L ++L L N ++ LS L+KL
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA--PLSGLTKL 265
Query: 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRF 296
L L N + I P L +L +
Sbjct: 266 TELKLGANQISNI--------------SPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 297 DDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKL 356
L N +S P L +L L ANN++S S+ L NI L+ +N+++
Sbjct: 312 LTLYFNNISDISPVSSLT--KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD-- 365
Query: 357 PSPLRNFSQLRVLDLEKNA 375
+PL N +++ L L A
Sbjct: 366 LTPLANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 64/343 (18%), Positives = 107/343 (31%), Gaps = 65/343 (18%)
Query: 213 EAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272
E + N T S + L ++ +L D +++I D L+
Sbjct: 23 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI----------------DGVEYLN 66
Query: 273 NKLSYLNLSNNHFRGKLPDLSLR---------------FDDLSSNLLSGGLPDCWLHFDR 317
N L+ +N SNN P +L + L+G D
Sbjct: 67 N-LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIF 377
+ NL N +++ ++ + L G + L+ + L L+ +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185
Query: 378 GEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEE 437
+ L NL L +N+ P + L L+ N+L
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGILTN-------LDELSLNGNQLKD--IGT 236
Query: 438 IMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIP-------------- 483
+ L L L+L+ N ++ + LT L L L N S P
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294
Query: 484 ------CSLSQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNAS 518
+S L L L L +NN+S P T+LQ +
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 337
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 94 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFF 153
I + ++ L L NN+ + + L+ L+ +++++
Sbjct: 299 DISPISNLKNLTYLTLYFNNISD---------ISPVSSLTKLQRLFFANNKVSD--VSSL 347
Query: 154 GNMCSLKKLRLSYNKLSG 171
N+ ++ L +N++S
Sbjct: 348 ANLTNINWLSAGHNQISD 365
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.1 bits (183), Expect = 2e-15
Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 44/310 (14%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+L LDL +N + + F+++ +L +L L ++++ P F +
Sbjct: 28 DLPPDTALLDLQNNKITE-------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
L++L LS N+L + L + + + +
Sbjct: 81 LERLYLSKNQLKELPE------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278
+G + + + KL + + ++ I + S L+ L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------------------LTEL 176
Query: 279 NLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIP 333
+L N +L LS N +S + L L+L NN+L K+P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235
Query: 334 DSMGFLNNIWTLNLHNNRLTG------KLPSPLRNFSQLRVLDLEKNAI-FGEIPTWIGE 386
+ I + LHNN ++ P + + L N + + EI
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295
Query: 387 SLQNLIVLSL 396
+ + L
Sbjct: 296 CVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.5 bits (166), Expect = 4e-13
Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 24/273 (8%)
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
L L ++++ F N+ +L L L NK+S L LE LY
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV------KLERLY 85
Query: 194 LRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCI 253
L N + N + + L+++ + L N L+
Sbjct: 86 LSKNQLKELPEKMPKTLQELRVHE--NEITKVRKSVFNGLNQMIVVELGTNPLK------ 137
Query: 254 LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDL--SLRFDDLSSNLLSGGLPDC 311
S F + LSY+ +++ + L SL L N ++
Sbjct: 138 ------SSGIENGAFQGMKK-LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 190
Query: 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
+ L L L+ N +S S+ ++ L+L+NN+L P L + ++V+ L
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYL 249
Query: 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGN 404
N I N S N
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.9 bits (154), Expect = 1e-11
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 10/217 (4%)
Query: 320 ILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGE 379
+L+L NN+++ L N+ TL L NN+++ P +L L L KN + E
Sbjct: 35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 93
Query: 380 IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIM 439
+P + ++LQ L V + K ++ +V L + K G
Sbjct: 94 LPEKMPKTLQELRVHENEITKVRKSVFNGL------NQMIVVELGTNPLKSSGIENGAFQ 147
Query: 440 DLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499
+ L + ++ ++T T G SL L L N + SL L+ L L LS+
Sbjct: 148 GMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 500 NNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMCL 536
N++S ++ N +L +P
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.2 bits (147), Expect = 7e-11
Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 20/265 (7%)
Query: 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRL 352
DL +N ++ + + L L L NN++S P + L + L L N+L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 353 TGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE 412
+ +LRV + E + + + + ++ L K G F+
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 413 YK----------------STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTG 456
K + L L NK+ + L L L LS N ++
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 457 PITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFN 516
+ L L L+ N +P L+ + V+ L NN+S + +N
Sbjct: 210 VDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 517 ASVYA-GNLELCGLPLANMCLDEES 540
+ + L P+ + +
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPST 293
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 423 LDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI 482
+ S L+ +P+++ L+L N +T L +L L L N S
Sbjct: 15 VQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71
Query: 483 PCSLSQLSGLGVLDLSYNNLSG 504
P + + L L L LS N L
Sbjct: 72 PGAFAPLVKLERLYLSKNQLKE 93
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 3e-10
Identities = 48/259 (18%), Positives = 81/259 (31%), Gaps = 16/259 (6%)
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILN 322
++P + + L N +L+ L + +
Sbjct: 25 AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 323 LANNR------LSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
L L P + L + TL+L L P R + L+ L L+ NA+
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436
L NL L L N+ F L + L L N++ P
Sbjct: 142 QALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRG-----LHSLDRLLLHQNRVAHVHPH 195
Query: 437 EIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLD 496
DL L+ L L N+L+ T + L +L +L L+ N + + + L
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFR 254
Query: 497 LSYNNLSGKIPSGTQLQSF 515
S + + +P +
Sbjct: 255 GSSSEVPCSLPQRLAGRDL 273
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 6e-09
Identities = 52/286 (18%), Positives = 88/286 (30%), Gaps = 37/286 (12%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCS 158
+ + + + L N + + +F+ +L L+L + L F +
Sbjct: 29 GIPAASQRIFLHGNRISH-------VPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYL-RWNDFTGPIPHLGGFSSLEAWSL 217
L++L LS N + +F + L L+L R G ++L+ L
Sbjct: 82 LEQLDLSDNAQLRS----VDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
N L D + L L L L GN + ++ F L + L
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSV--------------PERAFRGLHS-LDR 181
Query: 278 LNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI 332
L L N P L L +N LS + L L L +N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-D 240
Query: 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFG 378
+ + ++ + LP L + L N + G
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 25/261 (9%)
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
+ +++ L N++S + + N G + LE L
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACR-----NLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 218 DVNCLNGTI-DKSLSQLSKLESLSLDGNSLRAI---------SLCILTSPIGISDSIPDW 267
N ++ + L +L +L LD L+ + +L L ++PD
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 268 FWDLSNKLSYLNLSNNHFRGKLPDL-----SLRFDDLSSNLLSGGLPDCWLHFDRLFILN 322
+ L++L L N SL L N ++ P + RL L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 323 LANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPT 382
L N LS +++ L + L L++N ++ L+ + + +P
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLP- 265
Query: 383 WIGESLQNLIVLSLKSNKFHG 403
+ L + L +N G
Sbjct: 266 ---QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 56/284 (19%), Positives = 89/284 (31%), Gaps = 49/284 (17%)
Query: 236 LESLSLDGNSLRAI------SLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289
+ + L GN + + + LT S+ + L+ L + +L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 290 PDL---------SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLN 340
+ L L L P + L L L +N L D+ L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 341 NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNK 400
N+ L LH NR++ +P L +L L L N+
Sbjct: 154 NLTHLFLHGNRISS-------------------------VPERAFRGLHSLDRLLLHQNR 188
Query: 401 FHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITP 460
P+ F + LG + L L +N L E + L L L L+ N
Sbjct: 189 VAHVHPHAFRD-----LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-R 242
Query: 461 KIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504
L S + S+P +L+G + L+ N+L G
Sbjct: 243 ARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 4e-07
Identities = 39/210 (18%), Positives = 66/210 (31%), Gaps = 20/210 (9%)
Query: 309 PDCWL-HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLR 367
P C + +N L+ +P + + L+L N L + L +++L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYK------------- 414
L+L++ + L L + +
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 415 --STLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472
LG ++ L L N+L P + L L+L+ N+LT + L +LD L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYNNL 502
L N +IP L L N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 37/177 (20%), Positives = 51/177 (28%), Gaps = 12/177 (6%)
Query: 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWF 268
L N L +L ++L L+LD L + + +G D +
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 269 WDLSNKLSYLNLSNNHFRGKLPDLSLRFDDL-----------SSNLLSGGLPDCWLHFDR 317
L L SL L N L P +
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 318 LFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
L L+LANN L+ + L N+ TL L N L +P L L N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 17/208 (8%)
Query: 101 STSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLK 160
S ++ NL +++ P L L+LS++ L L
Sbjct: 9 VASHLEVNCDKRNL--TALPPDLPK--------DTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 161 KLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVN 220
+L L +L+ + ++ + L T P + S SL +
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 221 CLNGTIDKSLSQLSKLESLSLDGNSLRAISLCIL--TSPIGISDSIPDWFWDLSNKLSYL 278
L G + L E +L L + +++ L N L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTL 177
Query: 279 NLSNNHFRGKLPDL----SLRFDDLSSN 302
L N L F L N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 39/204 (19%), Positives = 59/204 (28%), Gaps = 39/204 (19%)
Query: 99 NLSTSIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSE-LEGGIPKFFGNMC 157
+L L LS+N L + +L L L L +E + + +
Sbjct: 28 DLPKDTTILHLSENLLYT-------FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGL--------------YLRWNDFTGPI 203
+L L + N L L YL+ N+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 204 PHLGGFSSLEA-WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISD 262
P L + SL N L L+ L L++L L NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--------------- 185
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFR 286
+IP F+ L + L N +
Sbjct: 186 TIPKGFFGSHL-LPFAFLHGNPWL 208
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 8e-07
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
L + LDL+ L + ++ G+IA R+ + P+ + + +DLS ++
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVI 58
Query: 479 SG-SIPCSLSQLSGLGVLDLSYNNLSGKIPS 508
++ LSQ S L L L LS I +
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 6e-06
Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 9/242 (3%)
Query: 271 LSNKLSYLNLSNNHFRGKLPD----LSLRFDDLSSNLLSG-GLPDCWLHFDRLFILNLAN 325
LS + + L + ++ DLS++++ L +L L+L
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
RLS I +++ +N+ LNL + S R+ +L + F +
Sbjct: 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140
Query: 386 ESLQNLIVLSLK---SNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLV 442
++ ++ + S + LV S L +E L
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200
Query: 443 GLIALNLSR-NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNN 501
L L+LSR + ++GE+ +L L + + G++ L L + +
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 260
Query: 502 LS 503
++
Sbjct: 261 IA 262
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 42/265 (15%), Positives = 81/265 (30%), Gaps = 17/265 (6%)
Query: 106 TLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLS 165
TLDL+ NL L + + S ++ + + F + ++ + LS
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQ--------GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLS 54
Query: 166 YNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIP-HLGGFSSLEAWSLDVNCLNG 224
+ + + + C + L+ L L + PI L S+L + C
Sbjct: 55 NSVIEV---STLHGILSQC--SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN-LSGCSGF 108
Query: 225 TIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNH 284
+ + LS L S S +LS L S+
Sbjct: 109 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 168
Query: 285 FRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN-NRLSGKIPDSMGFLNNIW 343
+ + D S +L + + L L+L+ + + +G + +
Sbjct: 169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228
Query: 344 TLNLHNNRLTGKLPSPLRNFSQLRV 368
TL + G L L++
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQI 253
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 26/306 (8%)
Query: 100 LSTSIETLDLSDNNLPSSSVYPWLLNLKAFQ-HMVSLKSLYLSDSELEGGIPKFFGNMCS 158
L +E+L S N+L + + +LK+ +LK+L LE
Sbjct: 56 LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 113
Query: 159 LKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLD 218
+ S+ K+ + ++ L + + +L +++ A +
Sbjct: 114 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 173
Query: 219 VNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFW--------- 269
+ L S ++ L L + + + ++PD
Sbjct: 174 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD 233
Query: 270 ----DLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLAN 325
DL L + L + N S + L LN++N
Sbjct: 234 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 293
Query: 326 NRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIG 385
N+L ++P + L N L ++P +N L+ L +E N + E P
Sbjct: 294 NKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPL-REFPDIP- 343
Query: 386 ESLQNL 391
ES+++L
Sbjct: 344 ESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.004
Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 422 CLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGS 481
N I L LN+S N L L+ L S N +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLA-E 318
Query: 482 IPCSLSQLSGLGVLDLSYNNLSG 504
+P L L + YN L
Sbjct: 319 VPELPQNLK---QLHVEYNPLRE 338
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 55/455 (12%), Positives = 116/455 (25%), Gaps = 19/455 (4%)
Query: 48 TSNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFI-WHFNLSTSIET 106
+ +I + + ++ + W +++ L + + L C L I ++ ++
Sbjct: 1 SLDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSY 166
L+L N L V+ L L+ ++ L L + L G +
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPS--CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117
Query: 167 NKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH---LGGFSSLEAWSLDVNCLN 223
+ L +++ L ++ ++
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177
Query: 224 GTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNN 283
+ L L A+ L + ++ SN
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237
Query: 284 HFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIW 343
+ +L SS L + + +C + L S+
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297
Query: 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG 403
+ L + L L + + +
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357
Query: 404 NIPYQFENEYKSTLGLVRCLDLSSNKLDG----AIPEEIMDLVGLIALNLSRNHLTGPIT 459
Q + S L R L L+ + ++ ++ L L+LS N L
Sbjct: 358 RELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414
Query: 460 PKIGE-----LTSLDFLDLSRNLFSGSIPCSLSQL 489
++ E L+ L L +S + L L
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 309 PDCWLHFDRLFILNLANNRLSGK----IPDSMGFLNNIWTLNLHNNRLTGKLPSPL---- 360
L +L LA+ +S + ++ +++ L+L NN L L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 361 -RNFSQLRVLDLEKNAIFGEIPTWIGESLQN---LIVLS 395
+ L L L E+ + ++ L V+S
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 420 VRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHLTG----PITPKIGELTSLDFLDLS 474
++ LD+ +L D E + L + L LT I+ + +L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 475 RNLFSGSIPCSLSQLSGLGVLDLSYNNLSG 504
N + Q + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 340 NNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQN----L 391
+ + L L + ++ L + L LR LDL N + + ES++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 392 IVLSLKSNKFHGNIPYQFENEYKS 415
L L + + + + K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKD 452
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 444 LIALNLSRNHLTGPITPKIGE----LTSLDFLDLSRNLFSGSIPCSLSQ-----LSGLGV 494
L L L+ ++ + SL LDLS N + L + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 495 LDLSYNNLSGKIPS 508
L L S ++
Sbjct: 431 LVLYDIYWSEEMED 444
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 46/352 (13%), Positives = 99/352 (28%), Gaps = 32/352 (9%)
Query: 188 SLEGLYLRWNDFTGP-----IPHLGGFSSLEAWSLDVNCLNG----TIDKSLSQLSKLES 238
S+EG L+ + T L S++ L N + + ++++ LE
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 239 LSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDD 298
+ I + + ++ + +LS + LS
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 299 LSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPS 358
L + GL + LA N+ + P + L + + K
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 359 PLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLG 418
R ++++ E G + + + + ++ +
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 419 LVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLF 478
+R L L+ L ++D E L L L N
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSK------------------LENIGLQTLRLQYNEI 285
Query: 479 SGSIPCSL-----SQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLE 525
+L ++ L L+L+ N S + +++ ++ G L+
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 337
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (88), Expect = 0.001
Identities = 48/317 (15%), Positives = 103/317 (32%), Gaps = 24/317 (7%)
Query: 103 SIETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEG----GIPKFFGNMCS 158
SIE L + + + L S+K + LS + + + + +
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLL---EDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60
Query: 159 LKKLRLSYN---KLSGQYSQVIQNLSFGCVVNS-LEGLYLRWNDFTGPIPHLGGFSSLEA 214
L+ S ++ + + ++ L + L + L N F +
Sbjct: 61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 215 WSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNK 274
L+ L+ + +L + +A + L S I + + + K
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 275 LSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPD 334
+ + + + +LL GL C N + S +
Sbjct: 181 TFQSHRLLHTVKMVQNG---IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237
Query: 335 SMGFLNNIWTLNLHNNRLTGKLPSPLRN------FSQLRVLDLEKNAIFGE----IPTWI 384
++ N+ L L++ L+ + + + + L+ L L+ N I + + T I
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 385 GESLQNLIVLSLKSNKF 401
E + +L+ L L N+F
Sbjct: 298 DEKMPDLLFLELNGNRF 314
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.3 bits (87), Expect = 0.002
Identities = 43/370 (11%), Positives = 100/370 (27%), Gaps = 62/370 (16%)
Query: 134 SLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLY 193
SLK ++ + + + S+K++ LS N + + ++ +
Sbjct: 9 SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLS--------------- 52
Query: 194 LRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCI 253
++++ LE + I
Sbjct: 53 ----------------------------------ENIASKKDLEIAEFSDIFTGRVKDEI 78
Query: 254 LTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWL 313
+ + ++ + +LS + LS L + GL
Sbjct: 79 PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 138
Query: 314 HFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEK 373
+ LA N+ + P + L + + K R ++++
Sbjct: 139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 198
Query: 374 NAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA 433
E G + + + + ++ + +R L L+ L
Sbjct: 199 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 258
Query: 434 IPEEIMD------LVGLIALNLSRNHLTGPITPKIGE-----LTSLDFLDLSRNLFSGSI 482
++D +GL L L N + + + L FL+L+ N F
Sbjct: 259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEE 317
Query: 483 PCSLSQLSGL 492
+ ++ +
Sbjct: 318 DDVVDEIREV 327
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 344 TLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHG 403
L+L + LT L + LDL N + P +L+ L VL N
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALEN 57
Query: 404 NIPYQFENEYKSTLGLVRCLDLSSNKL-DGAIPEEIMDLVGLIALNLSRNHLTG 456
+ L L +N+L A + ++ L+ LNL N L
Sbjct: 58 VDGVANLPRL-------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS--LRFDDLSSNLLSGGLPDCWLHFDRLFI 320
++ L +++L+LS+N R P L+ + L ++ + D + RL
Sbjct: 11 TVLCHLEQLLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 69
Query: 321 LNLANNRL-SGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQL 366
L L NNRL + + LNL N L + R L
Sbjct: 70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 421 RCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDF---------- 470
R L L+ L + + L+ + L+LS N L P + L L+
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57
Query: 471 ------------LDLSRN-LFSGSIPCSLSQLSGLGVLDLSYNNLSGK 505
L L N L + L L +L+L N+L +
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 136 KSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLR 195
+ L+L+ +L + + + L LS+N+L + +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-------- 50
Query: 196 WNDFTGPIPHLGGFSSLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNSLRAIS 250
++ + + L+ L N L + + L +L L+L GNSL
Sbjct: 51 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 19/181 (10%)
Query: 263 SIPDWFWDLSNKLSYLNLSNNHFRGKLPDLS------LRFDDLSSNLLSGGLPDCWLHFD 316
IP D+ + L L++N D L +L N L+G P+ +
Sbjct: 22 EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAI 376
+ L L N++ L+ + TLNL++N+++ +P + + L L+L N
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 377 FGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPE 436
+ L SL P + + V+ DL ++ +
Sbjct: 139 NCNCHLAWF--AEWLRKKSLNGGAARCGAPSKVRD--------VQIKDLPHSEFKCSSEN 188
Query: 437 E 437
Sbjct: 189 S 189
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.001
Identities = 29/214 (13%), Positives = 52/214 (24%), Gaps = 11/214 (5%)
Query: 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSL 217
+ +LR KL E + + ND I + + +
Sbjct: 30 NAIELRFVLTKLRVIQKGAFSGFGDL------EKIEISQNDVLEVIEADVFSNLPKLHEI 83
Query: 218 DVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSY 277
+ N + + L +L S I I + D N +
Sbjct: 84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 143
Query: 278 LNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMG 337
S + L L + + + + NN L D
Sbjct: 144 ERNSFVGLSFESVILWLNKNGIQEIH-----NCAFNGTQLDELNLSDNNNLEELPNDVFH 198
Query: 338 FLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDL 371
+ L++ R+ L N +LR
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 9/147 (6%)
Query: 332 IPDSMGFLN--NIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQ 389
I + + N L+L ++ + + Q +D N I ++ + L+
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF--PLLR 63
Query: 390 NLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIAL-N 448
L L + +N+ + T ++ L L P + + + +
Sbjct: 64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILR 121
Query: 449 LSRNHLTGPITPKIGELTSLDFLDLSR 475
+ I ++ + LD +
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLDFQK 148
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/214 (14%), Positives = 56/214 (26%), Gaps = 16/214 (7%)
Query: 315 FDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374
+ + ++ + + L+ I TL+ +T ++ + L L+L+ N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 375 AIFGE--------IPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLS 426
I I V ++ + + T
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 427 SNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSL 486
I LS + + L+ L L N S P L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 487 SQLSGLGVLDLSYNNLSGKIPSG--TQLQSFNAS 518
+ L L + L N +S P + L +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 16/211 (7%)
Query: 192 LYLRWNDFTGPIP--HLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAI 249
+ ++ T + L G ++L A+ V + G + L+ L L L N + +
Sbjct: 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDL 78
Query: 250 S----LCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLS 305
+ L +T + + + + + + L+ + L
Sbjct: 79 APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 306 GGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQ 365
+ + + L+ + L+ + TL +N+++ SPL +
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPN 196
Query: 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396
L + L+ N I P + NL +++L
Sbjct: 197 LIEVHLKNNQISDVSPL---ANTSNLFIVTL 224
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 12/167 (7%)
Query: 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTG--------KLPSPLRNFSQLR 367
+ + + N+ + + +L N+ L L+ N+LT L + ++++
Sbjct: 46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103
Query: 368 VLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSS 427
L K+ + + + ++ L + + L + LS
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163
Query: 428 NKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLS 474
+ + L L L LS+NH++ + L +LD L+L
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 444 LIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503
I NL + +T +T EL S+D + + + + L + L L+ N L+
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81
Query: 504 G 504
Sbjct: 82 D 82
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.004
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 32/159 (20%)
Query: 226 IDKSLSQLSKLESLSLDGNSLRAIS-------LCILTSPIGISDSIPDWFWDLSNKLSYL 278
+ +S+ +LD LR+ +L ++ ++ ++ L L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPE-LLSL 70
Query: 279 NLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGF 338
NLSNN + L ILNL+ N L +
Sbjct: 71 NLSNNRLYRL-----------------DDMSSIVQKAPNLKILNLSGNELKSERELDKIK 113
Query: 339 LNNIWTLNLHNNRLTGKLPSP-------LRNFSQLRVLD 370
+ L L N L+ F +L LD
Sbjct: 114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.61 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.61 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.49 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.33 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.31 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.17 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.36 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.31 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.1 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.06 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.66 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.66 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=4.6e-27 Score=240.63 Aligned_cols=168 Identities=25% Similarity=0.359 Sum_probs=114.5
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
..+++|++|++++|++++. ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+ ..++.. ..++.++
T Consensus 216 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l-~~~~~~--~~~~~l~ 288 (384)
T d2omza2 216 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQI-SNISPL--AGLTALT 288 (384)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC-CCCGGG--TTCTTCS
T ss_pred cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCccc-CCCCcc--ccccccc
Confidence 3455667777777766632 24556677777777777776432 366677777777777776 333322 2467777
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEe
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 472 (622)
.+.+.+|.+.+.. .+. .++.++.|++++|++++.. .+..+++|++|++++|++++ + ..++++++|++|+
T Consensus 289 ~l~~~~n~l~~~~--~~~-----~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~ 357 (384)
T d2omza2 289 NLELNENQLEDIS--PIS-----NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLS 357 (384)
T ss_dssp EEECCSSCCSCCG--GGG-----GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEE
T ss_pred ccccccccccccc--ccc-----hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEE
Confidence 7777777776422 122 5777888888888887543 36778888888888888874 3 3577888888888
Q ss_pred CCCCccCccCCccccCCCCCCEEECcCC
Q 037539 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 473 Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
+++|++++..| +.++++|+.|++++|
T Consensus 358 l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 88888886544 778888888888876
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1.1e-28 Score=245.26 Aligned_cols=220 Identities=33% Similarity=0.558 Sum_probs=178.8
Q ss_pred ccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHh
Q 037539 307 GLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGE 386 (622)
Q Consensus 307 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 386 (622)
.+|..+.++++|++|++++|++.+..+..+..+..|+.+++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+.
T Consensus 92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~- 170 (313)
T d1ogqa_ 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG- 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-
T ss_pred ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccc-
Confidence 4455566666777777777777766666677777777777777777777777788888888888888887777777766
Q ss_pred hccc-ccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCC
Q 037539 387 SLQN-LIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGEL 465 (622)
Q Consensus 387 ~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 465 (622)
.+.. ++.+++++|++++..+..+. .+ ....++++++...+.+|..+..+++++.+++++|.+.+.+ ..++.+
T Consensus 171 ~l~~l~~~l~~~~n~l~~~~~~~~~-----~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~ 243 (313)
T d1ogqa_ 171 SFSKLFTSMTISRNRLTGKIPPTFA-----NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGG-----GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCC
T ss_pred ccccccccccccccccccccccccc-----cc-cccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4544 47788888888877776664 33 4457899999888888988899999999999999998654 468889
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCCCcCCccCcccccCCcCCCCCCCCCCC
Q 037539 466 TSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSGTQLQSFNASVYAGNLELCGLPLANMC 535 (622)
Q Consensus 466 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~C 535 (622)
++|+.|+|++|++++.+|+.+..+++|++|+|++|+++|.+|....+..++.+.+.+|+.+||.|+. .|
T Consensus 244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 9999999999999999999999999999999999999999998888899999999999999998764 45
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=1e-25 Score=230.42 Aligned_cols=340 Identities=22% Similarity=0.312 Sum_probs=229.1
Q ss_pred CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccCCCCCCCCCchhhhcccc
Q 037539 49 SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLKA 128 (622)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 128 (622)
.+|++|+++++.+++.. .+..+++|++|++++|++++.. .+.++ ++|++|++++|++.+ ++ .
T Consensus 44 ~~l~~L~l~~~~I~~l~----gl~~L~nL~~L~Ls~N~l~~l~----~l~~L-~~L~~L~L~~n~i~~--i~-------~ 105 (384)
T d2omza2 44 DQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT----PLKNL-TKLVDILMNNNQIAD--IT-------P 105 (384)
T ss_dssp TTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCEEECCSSCCCC--CG-------G
T ss_pred CCCCEEECCCCCCCCcc----ccccCCCCCEEeCcCCcCCCCc----cccCC-ccccccccccccccc--cc-------c
Confidence 66777777777776653 4667778888888888777652 36666 778888888887764 21 2
Q ss_pred cCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCC
Q 037539 129 FQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGG 208 (622)
Q Consensus 129 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~ 208 (622)
++.+++|+.|+++++.+++..+ ......+..+....+.+....+..... ... ......... ....+..
T Consensus 106 l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~-~~~~~~~~~----~~~~~~~ 173 (384)
T d2omza2 106 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLT-----SLQ-QLSFGNQVT----DLKPLAN 173 (384)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCT-----TCS-EEEEEESCC----CCGGGTT
T ss_pred cccccccccccccccccccccc--ccccccccccccccccccccccccccc-----ccc-ccccccccc----hhhhhcc
Confidence 4677777888877777764322 344556666777666655433322110 001 111111111 1111344
Q ss_pred CCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCccc
Q 037539 209 FSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGK 288 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 288 (622)
.+.........+... ....+..+++++.+++++|.+++. +. ....++|++|++++|.+.
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~---------------~~--~~~~~~L~~L~l~~n~l~-- 232 (384)
T d2omza2 174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDI---------------TP--LGILTNLDELSLNGNQLK-- 232 (384)
T ss_dssp CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCC---------------GG--GGGCTTCCEEECCSSCCC--
T ss_pred ccccccccccccccc--cccccccccccceeeccCCccCCC---------------Cc--ccccCCCCEEECCCCCCC--
Confidence 444555555554443 234556677777787777776632 11 122346777777666654
Q ss_pred CCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccE
Q 037539 289 LPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRV 368 (622)
Q Consensus 289 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 368 (622)
. ...+..+++|+.|++++|++++.. .+..+++|++|+++++.+.+. ..+..++.++.
T Consensus 233 ------------------~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~ 289 (384)
T d2omza2 233 ------------------D-IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTN 289 (384)
T ss_dssp ------------------C-CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred ------------------C-cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC--Ccccccccccc
Confidence 1 235677889999999999988653 377889999999999998744 24778899999
Q ss_pred EEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceee
Q 037539 369 LDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALN 448 (622)
Q Consensus 369 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 448 (622)
+++.+|.+ ..++. + ..+++++.|++++|++++..+ +. .+++|++|++++|++++ ++ .+.++++|++|+
T Consensus 290 l~~~~n~l-~~~~~-~-~~~~~l~~L~ls~n~l~~l~~--l~-----~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~ 357 (384)
T d2omza2 290 LELNENQL-EDISP-I-SNLKNLTYLTLYFNNISDISP--VS-----SLTKLQRLFFANNKVSD-VS-SLANLTNINWLS 357 (384)
T ss_dssp EECCSSCC-SCCGG-G-GGCTTCSEEECCSSCCSCCGG--GG-----GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred cccccccc-ccccc-c-chhcccCeEECCCCCCCCCcc--cc-----cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence 99999988 34433 2 368899999999999986543 33 68999999999999984 44 688999999999
Q ss_pred cCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 449 LSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 449 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
+++|++++..| +.++++|+.|+|++|
T Consensus 358 l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 99999996544 889999999999988
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.94 E-value=9.7e-27 Score=230.98 Aligned_cols=245 Identities=32% Similarity=0.485 Sum_probs=144.5
Q ss_pred cccEEEeecccCCC--CCchhhcCCccCcEeEeec-CCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCC
Q 037539 134 SLKSLYLSDSELEG--GIPKFFGNMCSLKKLRLSY-NKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGF 209 (622)
Q Consensus 134 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l 209 (622)
+++.|+|+++.+.+ .+|..++++++|++|+|++ |.+++.+|..+.+++ +|++|+|++|++.+..+. +..+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~------~L~~L~Ls~N~l~~~~~~~~~~~ 124 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------QLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT------TCSEEEEEEECCEEECCGGGGGC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc------ccchhhhccccccccccccccch
Confidence 44555555555444 2445555555555555554 445545555433222 255555555555554444 5555
Q ss_pred CCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccC
Q 037539 210 SSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKL 289 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 289 (622)
+.|+.+++++|.+.+.+|..+..++.|+++++++|.+++ .+|..+......++.+++++|++.+..
T Consensus 125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~--------------~ip~~~~~l~~l~~~l~~~~n~l~~~~ 190 (313)
T d1ogqa_ 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred hhhcccccccccccccCchhhccCcccceeecccccccc--------------ccccccccccccccccccccccccccc
Confidence 555555555555555555555555555555555555432 345444444333455555555555444
Q ss_pred CCC----cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCC
Q 037539 290 PDL----SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQ 365 (622)
Q Consensus 290 ~~~----~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 365 (622)
|.. ....++++.+...+.++..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..++++++
T Consensus 191 ~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp CGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCC
Confidence 321 33445555555556666777777777888887777775544 4666777778888877777777777777777
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcC
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
|++|+|++|++.|.+|.. . .+++|+.+++++|+.
T Consensus 270 L~~L~Ls~N~l~g~iP~~-~-~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQG-G-NLQRFDVSAYANNKC 303 (313)
T ss_dssp CCEEECCSSEEEEECCCS-T-TGGGSCGGGTCSSSE
T ss_pred CCEEECcCCcccccCCCc-c-cCCCCCHHHhCCCcc
Confidence 888888877777677753 2 567777777777763
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.6e-23 Score=206.80 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLS 170 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 170 (622)
.++++|++|++++|.+....|..|..+++|+.|++++|+++
T Consensus 52 ~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~ 92 (305)
T d1xkua_ 52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92 (305)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred hccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence 44444444444444444444444444444444444444444
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=2.8e-23 Score=205.01 Aligned_cols=268 Identities=19% Similarity=0.207 Sum_probs=160.4
Q ss_pred cCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCCCCCCCEEEeecccCCccCccccCCCCCC
Q 037539 158 SLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGGFSSLEAWSLDVNCLNGTIDKSLSQLSKL 236 (622)
Q Consensus 158 ~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 236 (622)
..+.++-++.+++. +|..+ +.++++|+|++|+++...+. |.++++|++|++++|.+....+..|..+++|
T Consensus 11 ~~~~~~C~~~~L~~-lP~~l--------~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L 81 (305)
T d1xkua_ 11 HLRVVQCSDLGLEK-VPKDL--------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81 (305)
T ss_dssp ETTEEECTTSCCCS-CCCSC--------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred cCCEEEecCCCCCc-cCCCC--------CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence 56677777777774 34432 12488888888888876665 8888888888888888887777788888888
Q ss_pred CEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCC
Q 037539 237 ESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFD 316 (622)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 316 (622)
++|++++|+++. +|... .+.++.|++.+|.+. +..+..+....
T Consensus 82 ~~L~l~~n~l~~---------------l~~~~---~~~l~~L~~~~n~l~-------------------~l~~~~~~~~~ 124 (305)
T d1xkua_ 82 ERLYLSKNQLKE---------------LPEKM---PKTLQELRVHENEIT-------------------KVRKSVFNGLN 124 (305)
T ss_dssp CEEECCSSCCSB---------------CCSSC---CTTCCEEECCSSCCC-------------------BBCHHHHTTCT
T ss_pred CEecccCCccCc---------------Cccch---hhhhhhhhccccchh-------------------hhhhhhhhccc
Confidence 888888888763 33221 124455555444433 22223344444
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeec
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSL 396 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 396 (622)
.+..++...|..... ...+..+..+++|+.+++++|.+ ..+|... +++|+.|++
T Consensus 125 ~~~~l~~~~n~~~~~----------------------~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~---~~~L~~L~l 178 (305)
T d1xkua_ 125 QMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHL 178 (305)
T ss_dssp TCCEEECCSSCCCGG----------------------GBCTTGGGGCTTCCEEECCSSCC-CSCCSSC---CTTCSEEEC
T ss_pred ccccccccccccccc----------------------CCCccccccccccCccccccCCc-cccCccc---CCccCEEEC
Confidence 555555554432211 11222334444444444444444 3333321 345555555
Q ss_pred CCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCC
Q 037539 397 KSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRN 476 (622)
Q Consensus 397 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 476 (622)
++|......+..+. .++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|+++..+++|++|+|++|
T Consensus 179 ~~n~~~~~~~~~~~-----~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 179 DGNKITKVDAASLK-----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 252 (305)
T ss_dssp TTSCCCEECTGGGT-----TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred CCCcCCCCChhHhh-----ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCC
Confidence 55555544444433 4556666666666666555666666777777777777776 45666777777777777777
Q ss_pred ccCccCCcc------ccCCCCCCEEECcCCcCc
Q 037539 477 LFSGSIPCS------LSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 477 ~l~~~~~~~------l~~l~~L~~L~ls~N~l~ 503 (622)
+|+...... +..+++|+.|++++|++.
T Consensus 253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 776543322 335567888888888875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-24 Score=211.36 Aligned_cols=211 Identities=22% Similarity=0.177 Sum_probs=183.1
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeee-CCcCCCCCCccccCCCCccEEEc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH-NNRLTGKLPSPLRNFSQLRVLDL 371 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~l~~l~~L~~L~L 371 (622)
.+++|++++|.++...+..|.++++|++|++++|++....+..+..+..++.+... .+.+....+..|.++++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 34555555555555556678999999999999999998888888889999998765 56677677888999999999999
Q ss_pred cCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCC
Q 037539 372 EKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSR 451 (622)
Q Consensus 372 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 451 (622)
++|.+ ..++...+...++|+.+++++|++++..+..+. .+++|+.|++++|++.+..+..|.++++|+.+++++
T Consensus 113 ~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~-----~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~ 186 (284)
T d1ozna_ 113 DRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (284)
T ss_dssp TTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCccc-ccccccccchhcccchhhhccccccccChhHhc-----cccchhhcccccCcccccchhhhccccccchhhhhh
Confidence 99998 555555555788999999999999977776665 688999999999999988888999999999999999
Q ss_pred ccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 452 NHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 452 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
|++++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|++.|.++..
T Consensus 187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~ 244 (284)
T d1ozna_ 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (284)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence 9999888999999999999999999999988899999999999999999999987643
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.9e-23 Score=198.98 Aligned_cols=96 Identities=27% Similarity=0.320 Sum_probs=61.2
Q ss_pred CccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhc
Q 037539 309 PDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESL 388 (622)
Q Consensus 309 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l 388 (622)
+..|..+++|+.|++++|++++..+..|.++++|+.+++++|.+++..|..|..+++|++|++++|.+ ..++...+..+
T Consensus 146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~~~~~~~~~ 224 (284)
T d1ozna_ 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPL 224 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTC
T ss_pred hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc-ccccccccccc
Confidence 34455566666666666666666666666667777777777776666666666677777777777776 33444444456
Q ss_pred ccccEeecCCCcCcccC
Q 037539 389 QNLIVLSLKSNKFHGNI 405 (622)
Q Consensus 389 ~~L~~L~L~~n~l~~~~ 405 (622)
++|++|++++|++....
T Consensus 225 ~~L~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 225 RALQYLRLNDNPWVCDC 241 (284)
T ss_dssp TTCCEEECCSSCEECSG
T ss_pred cccCEEEecCCCCCCCc
Confidence 66777777776666443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-22 Score=194.58 Aligned_cols=182 Identities=25% Similarity=0.200 Sum_probs=144.5
Q ss_pred CCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 316 DRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
+++++|+|++|+|++..+..|..+++|++|++++|+++. ++ .++.+++|++|++++|++ ...+..+. .+++|++|+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l-~~~~~~~~-~l~~L~~L~ 106 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQ-TLPALTVLD 106 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCC-SSCCCCTT-TCTTCCEEE
T ss_pred cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccc-cccccccc-ccccccccc
Confidence 467778888887776666677777788888888887763 32 356677888888888877 44444443 677888888
Q ss_pred cCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCC
Q 037539 396 LKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSR 475 (622)
Q Consensus 396 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 475 (622)
+++|.+....+..+. .+.++++|++++|.+.+..+..+..++.|+.+++++|++++..++.|..+++|++|+|++
T Consensus 107 l~~~~~~~~~~~~~~-----~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 181 (266)
T d1p9ag_ 107 VSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (266)
T ss_dssp CCSSCCCCCCSSTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccceeeccccc-----cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence 888887765555554 678888999999988877777788899999999999999988888899999999999999
Q ss_pred CccCccCCccccCCCCCCEEECcCCcCcccCC
Q 037539 476 NLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIP 507 (622)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 507 (622)
|+|+ .+|+.+..+++|+.|+|++|++.|.+.
T Consensus 182 N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 9998 778888889999999999999998753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.7e-22 Score=192.36 Aligned_cols=205 Identities=23% Similarity=0.230 Sum_probs=177.9
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
.....+.+++.+++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+ ..++.. ..+++|+
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~~--~~l~~L~ 80 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD--GTLPVLG 80 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC--SCCTTCC
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccccc--ccccccc
Confidence 34556778899999998 5676553 6899999999999977778899999999999999999 566653 2589999
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEe
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 472 (622)
+|++++|++....+ .+. .+++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++|+.++
T Consensus 81 ~L~Ls~N~l~~~~~-~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~ 154 (266)
T d1p9ag_ 81 TLDLSHNQLQSLPL-LGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (266)
T ss_dssp EEECCSSCCSSCCC-CTT-----TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccccccccccc-ccc-----cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcc
Confidence 99999999986543 333 789999999999999988888889999999999999999988888889999999999
Q ss_pred CCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC-CcCCccCcccccCCcCCCCCC
Q 037539 473 LSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG-TQLQSFNASVYAGNLELCGLP 530 (622)
Q Consensus 473 Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 530 (622)
+++|++++..++.|..+++|++|+|++|+++ .+|.+ .....++.+.+.|||+.|+|.
T Consensus 155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 9999999888888999999999999999999 77765 456778889999999999874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=5.7e-19 Score=177.34 Aligned_cols=55 Identities=29% Similarity=0.292 Sum_probs=26.5
Q ss_pred ccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCc
Q 037539 441 LVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 441 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 503 (622)
+++|++|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|.. +++|++|++++|+++
T Consensus 283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence 344555555555554 2332 2345555555555555 33321 234555555555554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2e-22 Score=210.65 Aligned_cols=212 Identities=23% Similarity=0.135 Sum_probs=137.3
Q ss_pred cccEEeCCCCcCccc----cCccccCCCCCCEEEccCCccccc-----CCCccCCCCCccEEeeeCCcCCCC----CCcc
Q 037539 293 SLRFDDLSSNLLSGG----LPDCWLHFDRLFILNLANNRLSGK-----IPDSMGFLNNIWTLNLHNNRLTGK----LPSP 359 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 359 (622)
....+++..+.+... ....+...+.++.+++++|++... ..........++.+++++|.+... ....
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~ 278 (460)
T d1z7xw1 199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278 (460)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence 344555555544321 122344667888888888876422 223344567888999998887632 2223
Q ss_pred ccCCCCccEEEccCCcccccCchhHH----hhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc--
Q 037539 360 LRNFSQLRVLDLEKNAIFGEIPTWIG----ESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA-- 433 (622)
Q Consensus 360 l~~l~~L~~L~L~~n~i~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 433 (622)
+...+.++.+++++|.+.+.....+. .....|+.+++++|.+.......+.. .....++|++|+|++|++++.
T Consensus 279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~-~~~~~~~L~~L~Ls~N~i~~~g~ 357 (460)
T d1z7xw1 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGV 357 (460)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHH
T ss_pred ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc-ccccccchhhhheeeecccCccc
Confidence 45678889999999888543332222 12357889999998887655544432 333677899999999988653
Q ss_pred --chHHhh-cccccceeecCCccccCC----CccccCCCCCCCEEeCCCCccCccCCccc----c-CCCCCCEEECcCCc
Q 037539 434 --IPEEIM-DLVGLIALNLSRNHLTGP----ITPKIGELTSLDFLDLSRNLFSGSIPCSL----S-QLSGLGVLDLSYNN 501 (622)
Q Consensus 434 --~~~~~~-~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~-~l~~L~~L~ls~N~ 501 (622)
+++.+. ..+.|++|+|++|.+++. +++.+..+++|++|+|++|+++......+ . ....|+.|++.+|+
T Consensus 358 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred chhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 233333 456789999999988753 33456667899999999998875433322 2 33468999999988
Q ss_pred Cccc
Q 037539 502 LSGK 505 (622)
Q Consensus 502 l~~~ 505 (622)
+...
T Consensus 438 ~~~~ 441 (460)
T d1z7xw1 438 WSEE 441 (460)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.3e-23 Score=217.90 Aligned_cols=415 Identities=17% Similarity=0.148 Sum_probs=209.0
Q ss_pred CccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCC--cchhccccCcccEEEccCCCCCCCCCchhhhccc
Q 037539 50 NINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPS--FIWHFNLSTSIETLDLSDNNLPSSSVYPWLLNLK 127 (622)
Q Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 127 (622)
+|++||++++++++. .|..-+..++++++|+|++|.++..... ...+... ++|++|||++|.+++ .....+ ..
T Consensus 3 ~l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~-~~L~~LdLs~N~i~~-~~~~~l--~~ 77 (460)
T d1z7xw1 3 DIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGD-VGVHCV--LQ 77 (460)
T ss_dssp EEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHH-HHHHHH--HH
T ss_pred CCCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcC-CCCCEEECcCCcCCh-HHHHHH--HH
Confidence 456666666666554 1122345556666666666665532110 0123344 666666666666542 100011 11
Q ss_pred ccC-CCccccEEEeecccCCCC----CchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCccccc
Q 037539 128 AFQ-HMVSLKSLYLSDSELEGG----IPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGP 202 (622)
Q Consensus 128 ~l~-~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~ 202 (622)
.+. ...+|++|++++|.+++. ++..+..+++|++|++++|.+++.....+... +....................
T Consensus 78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~ 156 (460)
T d1z7xw1 78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-LLDPQCRLEKLQLEYCSLSAA 156 (460)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-HTSTTCCCCEEECTTSCCBGG
T ss_pred HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc-ccccccccccccccccccchh
Confidence 111 234566666666666543 23445566677777777776654433332221 111111133333333322211
Q ss_pred CC----C-CCCCCCCCEEEeecccCCccCc----ccc-CCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcC
Q 037539 203 IP----H-LGGFSSLEAWSLDVNCLNGTID----KSL-SQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLS 272 (622)
Q Consensus 203 ~~----~-l~~l~~L~~L~L~~n~l~~~~~----~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (622)
.. . +...+.++.++++++....... ..+ ..-.....+++..+.+...... ... ......
T Consensus 157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~----------~~~-~~l~~~ 225 (460)
T d1z7xw1 157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR----------DLC-GIVASK 225 (460)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH----------HHH-HHHHHC
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh----------ccc-cccccc
Confidence 00 0 2233455555555554321100 001 1122344555555544311000 000 011122
Q ss_pred CCCcEEEccCCcCcccCCCCcccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccC----CCccCCCCCccEEeee
Q 037539 273 NKLSYLNLSNNHFRGKLPDLSLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKI----PDSMGFLNNIWTLNLH 348 (622)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls 348 (622)
+.++.+++.+|.+.... +.............++.+++++|.+.... ...+...+.++.++++
T Consensus 226 ~~~~~l~~~~n~~~~~~--------------~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~ 291 (460)
T d1z7xw1 226 ASLRELALGSNKLGDVG--------------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291 (460)
T ss_dssp TTCCEEECCSSBCHHHH--------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred ccccccchhhccccccc--------------cchhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 35556655555432100 00011222334556777777777664221 1223445667777777
Q ss_pred CCcCCCCCCcc-----ccCCCCccEEEccCCcccccCchhH---HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCc
Q 037539 349 NNRLTGKLPSP-----LRNFSQLRVLDLEKNAIFGEIPTWI---GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLV 420 (622)
Q Consensus 349 ~n~i~~~~~~~-----l~~l~~L~~L~L~~n~i~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 420 (622)
+|.+....... ....+.|+.+++++|.+.......+ ....++|++|+|++|++.+.....+........+.|
T Consensus 292 ~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L 371 (460)
T d1z7xw1 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 371 (460)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred cccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCC
Confidence 77664221111 1234578888888887744332222 224567888888888887654444444333356778
Q ss_pred cEEECCCCcCCcc----chHHhhcccccceeecCCccccCCCcccc----C-CCCCCCEEeCCCCccCccCCccc----c
Q 037539 421 RCLDLSSNKLDGA----IPEEIMDLVGLIALNLSRNHLTGPITPKI----G-ELTSLDFLDLSRNLFSGSIPCSL----S 487 (622)
Q Consensus 421 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~Ls~n~l~~~~~~~l----~ 487 (622)
++|+|++|.+++. +++.+..+++|++|+|++|++++.....+ . +.+.|+.|++.+|.+.......+ .
T Consensus 372 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~ 451 (460)
T d1z7xw1 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451 (460)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHH
Confidence 8999999988753 34556677889999999998875443332 2 34579999999998885544433 3
Q ss_pred CCCCCCEE
Q 037539 488 QLSGLGVL 495 (622)
Q Consensus 488 ~l~~L~~L 495 (622)
..|+|+.|
T Consensus 452 ~~~~l~~~ 459 (460)
T d1z7xw1 452 DKPSLRVI 459 (460)
T ss_dssp HCTTSEEE
T ss_pred hCCCCEEe
Confidence 44666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=6.1e-18 Score=169.73 Aligned_cols=176 Identities=23% Similarity=0.216 Sum_probs=107.3
Q ss_pred cCCcEEeCCCCCCCCC----CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEE
Q 037539 33 ERLQELVLGLGKFFET----SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLD 108 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~----~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~ 108 (622)
.++++|||+++.++.+ ++|++|++++|+++..|+ . ..+|++|++++|.++.. ..+++.|++|+
T Consensus 38 ~~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~---~---~~~L~~L~l~~n~l~~l-------~~lp~~L~~L~ 104 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPE---L---PQSLKSLLVDNNNLKAL-------SDLPPLLEYLG 104 (353)
T ss_dssp HTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCC---C---CTTCCEEECCSSCCSCC-------CSCCTTCCEEE
T ss_pred cCCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCccccc---c---hhhhhhhhhhhcccchh-------hhhcccccccc
Confidence 4678888888887766 678888888888776654 2 35677888888776543 23445688888
Q ss_pred ccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCC
Q 037539 109 LSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNS 188 (622)
Q Consensus 109 Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~ 188 (622)
+++|.+.. +|. ++.+++|++|+++++.+... +. ....+..+.+..+...... . ++.+..
T Consensus 105 L~~n~l~~--lp~-------~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~~--~-----l~~l~~- 163 (353)
T d1jl5a_ 105 VSNNQLEK--LPE-------LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEELP--E-----LQNLPF- 163 (353)
T ss_dssp CCSSCCSS--CCC-------CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC--C-----CTTCTT-
T ss_pred cccccccc--ccc-------hhhhccceeecccccccccc-cc---ccccccchhhccccccccc--c-----cccccc-
Confidence 88887763 322 25667788888877776632 22 2345566666655544221 2 333444
Q ss_pred cCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCc
Q 037539 189 LEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 189 L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 247 (622)
++.+++++|........ ....+.+...++.+. ..+ .+..++.|+.+++++|...
T Consensus 164 l~~L~l~~n~~~~~~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~ 217 (353)
T d1jl5a_ 164 LTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 217 (353)
T ss_dssp CCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ceecccccccccccccc---ccccccccccccccc-ccc-ccccccccccccccccccc
Confidence 77777777765532221 123345555555444 222 3556777777777777654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=4e-17 Score=152.67 Aligned_cols=185 Identities=22% Similarity=0.314 Sum_probs=139.8
Q ss_pred cccEEeCCCCcCccccCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEcc
Q 037539 293 SLRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLE 372 (622)
Q Consensus 293 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 372 (622)
+++.|++.+|+++. + ..+..+++|++|++++|++++..+ +..+++++.+++++|.++. + ..+.++++|+.++++
T Consensus 42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccc
Confidence 34444455555443 3 347889999999999999886543 7888999999999998873 3 357889999999999
Q ss_pred CCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCc
Q 037539 373 KNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRN 452 (622)
Q Consensus 373 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 452 (622)
++...+ ++. +. ..+.++.+.++++.+....+ +. .+++|+.|++++|.+.+.. .++++++|++|++++|
T Consensus 116 ~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~--~~-----~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n 183 (227)
T d1h6ua2 116 STQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LA-----GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN 183 (227)
T ss_dssp TSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GG-----GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred cccccc-cch-hc-cccchhhhhchhhhhchhhh--hc-----cccccccccccccccccch--hhcccccceecccCCC
Confidence 988733 322 22 57888999998888764433 22 6788999999999887433 3788999999999999
Q ss_pred cccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcC
Q 037539 453 HLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499 (622)
Q Consensus 453 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 499 (622)
++++ + ..++++++|++|+|++|++++.. .+.++++|+.|++++
T Consensus 184 ~l~~-l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 184 KISD-I-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCCC-C-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred ccCC-C-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 9885 3 34788999999999999988543 378899999999863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.7e-17 Score=155.18 Aligned_cols=202 Identities=23% Similarity=0.268 Sum_probs=147.0
Q ss_pred cCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccE
Q 037539 33 ERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIET 106 (622)
Q Consensus 33 ~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~ 106 (622)
.++..++++.+.+++. .+|++|++.+|.+++.+ .+.++++|++|++++|.+++. ..+..+ ++|++
T Consensus 19 ~~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~ls~n~i~~~----~~l~~l-~~l~~ 89 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDL----APLKNL-TKITE 89 (227)
T ss_dssp HHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCC----GGGTTC-CSCCE
T ss_pred HHHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch----hHhcCCCCcEeecCCceeecc----cccccc-ccccc
Confidence 3334456666666554 78888888888887663 478888999999999888765 346777 88899
Q ss_pred EEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccC
Q 037539 107 LDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVV 186 (622)
Q Consensus 107 L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~ 186 (622)
+++++|.++. + ..+..+++|++++++++...+. ..+...+.++.+.++++.+....+ +...+
T Consensus 90 l~~~~n~~~~--i-------~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~ 151 (227)
T d1h6ua2 90 LELSGNPLKN--V-------SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-------LAGLT 151 (227)
T ss_dssp EECCSCCCSC--C-------GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-------GGGCT
T ss_pred cccccccccc--c-------cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh-------hcccc
Confidence 9998888764 2 2356788889999888877643 346777888888888887765433 33444
Q ss_pred CCcCEEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCch
Q 037539 187 NSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPD 266 (622)
Q Consensus 187 ~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~ 266 (622)
+ |++|++++|.+.+. +.++++++|++|++++|++++. + .++.+++|++|++++|+++++ +.
T Consensus 152 ~-L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i---------------~~ 212 (227)
T d1h6ua2 152 N-LQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV---------------SP 212 (227)
T ss_dssp T-CCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC---------------GG
T ss_pred c-cccccccccccccc-hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC---------------cc
Confidence 4 89999988887643 3378888899999998888753 2 478888899999999888743 32
Q ss_pred hHHhcCCCCcEEEccC
Q 037539 267 WFWDLSNKLSYLNLSN 282 (622)
Q Consensus 267 ~~~~~~~~L~~L~l~~ 282 (622)
...+++|+.|++++
T Consensus 213 --l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 213 --LANTSNLFIVTLTN 226 (227)
T ss_dssp --GTTCTTCCEEEEEE
T ss_pred --cccCCCCCEEEeeC
Confidence 23446888888764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-17 Score=158.13 Aligned_cols=200 Identities=16% Similarity=0.071 Sum_probs=138.5
Q ss_pred ccEEeCCCCcCccccCccccCCCCCCEEEccCCccccc-CCCccCCCCCccEEeeeC-CcCCCCCCccccCCCCccEEEc
Q 037539 294 LRFDDLSSNLLSGGLPDCWLHFDRLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHN-NRLTGKLPSPLRNFSQLRVLDL 371 (622)
Q Consensus 294 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L 371 (622)
+++|++++|.+....+..|.++++|++|++++|.+... .+..|..++.++++.+.. |.+....+..|..+++|+++++
T Consensus 31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l 110 (242)
T d1xwdc1 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 110 (242)
T ss_dssp CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence 33444444444444455788899999999999988654 345678889999998765 5677677788899999999999
Q ss_pred cCCcccccCch-hHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccce-eec
Q 037539 372 EKNAIFGEIPT-WIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIA-LNL 449 (622)
Q Consensus 372 ~~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L 449 (622)
++|.+. ..+. .....++.+..+...++.+....+..+.. ....++.|++++|++++..+..+ ...++++ +++
T Consensus 111 ~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~----~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l 184 (242)
T d1xwdc1 111 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG----LSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLS 184 (242)
T ss_dssp ESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT----SBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECT
T ss_pred chhhhc-cccccccccccccccccccccccccccccccccc----ccccceeeecccccccccccccc-cchhhhccccc
Confidence 999884 4433 22224556666677777776555444431 23478889999999885444444 4455444 467
Q ss_pred CCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcC
Q 037539 450 SRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSY 499 (622)
Q Consensus 450 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 499 (622)
++|+++...+..|.++++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus 185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 78888865566788899999999999999866666677777666665543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=8.1e-18 Score=152.87 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=29.0
Q ss_pred cCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccC
Q 037539 417 LGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 479 (622)
+++|++|+|++|+++...+.+|.++++|++|+|++|+|++..++.|..+++|++|+|++|++.
T Consensus 77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 344444444444444333344444444444444444444444444444555555555555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=9.8e-17 Score=147.77 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=123.5
Q ss_pred EeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEccC
Q 037539 38 LVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLSD 111 (622)
Q Consensus 38 L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls~ 111 (622)
.+++.+.+.+. .+|++|++++|.+++.+ .+..+++|++|++++|++++.. .+..+ ++|++|++++
T Consensus 29 ~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~L~~n~i~~l~----~~~~l-~~L~~L~l~~ 99 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIK----PLANL-KNLGWLFLDE 99 (210)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----GGTTC-TTCCEEECCS
T ss_pred HHhCcCccCCccCHHHhcCccEEECcCCCCCCch----hHhhCCCCCEEeCCCccccCcc----ccccC-cccccccccc
Confidence 34555555443 67788888888777664 3677888888888888887653 35566 8888888888
Q ss_pred CCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCE
Q 037539 112 NNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEG 191 (622)
Q Consensus 112 n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~ 191 (622)
|++++ + ..+..+++|+.|++++|.+.. ...+..+++++.+++++|.+++.. . +..+++ |++
T Consensus 100 n~i~~--l-------~~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--~-----~~~l~~-L~~ 160 (210)
T d1h6ta2 100 NKVKD--L-------SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT--V-----LSRLTK-LDT 160 (210)
T ss_dssp SCCCC--G-------GGGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--G-----GGGCTT-CSE
T ss_pred ccccc--c-------ccccccccccccccccccccc--cccccccccccccccccccccccc--c-----cccccc-ccc
Confidence 88764 2 234677888888888887763 245777888888888888876432 2 334444 888
Q ss_pred EEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEEEccC
Q 037539 192 LYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESLSLDG 243 (622)
Q Consensus 192 L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 243 (622)
+++++|++++ ++.++++++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus 161 l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 161 LSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp EECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred cccccccccc-cccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 8888888764 3347778888888888888774 33 577788888887753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=6.7e-17 Score=147.58 Aligned_cols=172 Identities=22% Similarity=0.318 Sum_probs=105.8
Q ss_pred EEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcccEEEcc
Q 037539 37 ELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSIETLDLS 110 (622)
Q Consensus 37 ~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~L~Ls 110 (622)
.+.++.+.+++. +++++|++++|.++... .+..+++|++|++++|++++. ..+.++ ++|++|+++
T Consensus 22 ~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~----~l~~l~nL~~L~Ls~N~l~~~----~~l~~l-~~L~~L~l~ 92 (199)
T d2omxa2 22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDI----TPLKNL-TKLVDILMN 92 (199)
T ss_dssp HHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCC----GGGTTC-TTCCEEECC
T ss_pred HHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc----ccccCCCcCcCccccccccCc----ccccCC-ccccccccc
Confidence 344555555443 66777777777766553 366677777777777777654 235666 777777777
Q ss_pred CCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcC
Q 037539 111 DNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLE 190 (622)
Q Consensus 111 ~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~ 190 (622)
+|.+.. ++ .+.++++|++|++++|.+... ..+..+++|+.|++++|++... + . +..+++ |+
T Consensus 93 ~n~~~~--~~-------~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~-----l~~~~~-L~ 153 (199)
T d2omxa2 93 NNQIAD--IT-------PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-S-A-----LSGLTS-LQ 153 (199)
T ss_dssp SSCCCC--CG-------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-G-----GTTCTT-CS
T ss_pred cccccc--cc-------ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc-c-c-----cccccc-cc
Confidence 776653 21 245667777777777766532 3466677777777777766532 2 2 333444 77
Q ss_pred EEEccCCcccccCCCCCCCCCCCEEEeecccCCccCccccCCCCCCCEE
Q 037539 191 GLYLRWNDFTGPIPHLGGFSSLEAWSLDVNCLNGTIDKSLSQLSKLESL 239 (622)
Q Consensus 191 ~L~L~~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 239 (622)
+|++.+|++++. +.++++++|++|++++|++++. + .++++++|++|
T Consensus 154 ~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 154 QLNFSSNQVTDL-KPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp EEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred ccccccccccCC-ccccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence 777777766542 3366666777777777766642 2 45666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.2e-17 Score=152.26 Aligned_cols=79 Identities=22% Similarity=0.167 Sum_probs=47.2
Q ss_pred CCCEEEccCCcccccCCCccCCCCCccEE-eeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEee
Q 037539 317 RLFILNLANNRLSGKIPDSMGFLNNIWTL-NLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLS 395 (622)
Q Consensus 317 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 395 (622)
.++.|++++|+++...+..+. ..+++++ .+++|.++...+..|.++++|++|++++|++ ..+|.+.+.++++|++++
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~l~ 231 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARS 231 (242)
T ss_dssp SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC-CCCCSSSCTTCCEEESSS
T ss_pred cceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcC-CccCHHHHcCCcccccCc
Confidence 566677777777644444333 3444443 4566666644455667777777777777777 466665555566666655
Q ss_pred cC
Q 037539 396 LK 397 (622)
Q Consensus 396 L~ 397 (622)
+.
T Consensus 232 ~~ 233 (242)
T d1xwdc1 232 TY 233 (242)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.8e-16 Score=143.44 Aligned_cols=163 Identities=32% Similarity=0.465 Sum_probs=121.1
Q ss_pred cCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhccccc
Q 037539 313 LHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLI 392 (622)
Q Consensus 313 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 392 (622)
..++++++|++++|.++.. +.++.+++|++|++++|++++.. .++++++|++|++++|.+ ..++. + .+++.|+
T Consensus 37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~-~~~~~-l-~~l~~L~ 109 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI-ADITP-L-ANLTNLT 109 (199)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC-CCCGG-G-TTCTTCS
T ss_pred HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccc-ccccc-c-ccccccc
Confidence 3566788888888888743 34677888888888888887543 378888888888888887 45543 3 3688888
Q ss_pred EeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEe
Q 037539 393 VLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLD 472 (622)
Q Consensus 393 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 472 (622)
.|++++|.+....+ +. .+++|+.|++++|++.. ++ .+..+++|++|++++|++++. ..++++++|++|+
T Consensus 110 ~L~l~~~~~~~~~~--~~-----~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ 178 (199)
T d2omxa2 110 GLTLFNNQITDIDP--LK-----NLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLD 178 (199)
T ss_dssp EEECCSSCCCCCGG--GT-----TCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred cccccccccccccc--cc-----hhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC--ccccCCCCCCEEE
Confidence 88888887764322 22 67888888888888863 33 577888888888888888753 3478888888888
Q ss_pred CCCCccCccCCccccCCCCCCEE
Q 037539 473 LSRNLFSGSIPCSLSQLSGLGVL 495 (622)
Q Consensus 473 Ls~n~l~~~~~~~l~~l~~L~~L 495 (622)
+++|++++ ++ .+..+++|++|
T Consensus 179 ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 179 ISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCCCCC-Cc-cccCCCCCCcC
Confidence 88888874 33 47788888775
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.67 E-value=2.9e-17 Score=149.12 Aligned_cols=135 Identities=24% Similarity=0.238 Sum_probs=114.8
Q ss_pred ccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccC-ChhhhHhHhhhcCCccEEECCCCcCCccchHHhhccccc
Q 037539 366 LRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNI-PYQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGL 444 (622)
Q Consensus 366 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 444 (622)
.++++.+++++ ..+|..+. +++++|+|++|+|+..+ +..+. .+++|+.|+|++|.+....+..+..+++|
T Consensus 10 ~~~v~Cs~~~L-~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~-----~l~~L~~L~L~~N~i~~~~~~~~~~~~~L 80 (192)
T d1w8aa_ 10 GTTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCEEEEeCCCc-CccCCCCC---CCCCEEEeCCCCCcccccccccC-----CCceEeeeecccccccccccccccccccc
Confidence 35677777777 67776643 57888888888887543 33444 78899999999999998888999999999
Q ss_pred ceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccCCCC
Q 037539 445 IALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKIPSG 509 (622)
Q Consensus 445 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 509 (622)
++|+|++|+++...++.|.++++|++|+|++|+|++..++.|..+++|++|++++|++.+.++..
T Consensus 81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~ 145 (192)
T d1w8aa_ 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH
Confidence 99999999999888889999999999999999999999999999999999999999998876543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=3.3e-16 Score=144.17 Aligned_cols=160 Identities=21% Similarity=0.371 Sum_probs=134.8
Q ss_pred cCcCCcEEeCCCCCCCCC------CCccEEEcCCcccCCCCcchHhhcCCCCCCEEEccCCCCCCCCCCcchhccccCcc
Q 037539 31 NIERLQELVLGLGKFFET------SNINTFFLNTVSVTKSSDWFQVVAKLHSLKSLVLFSCALPPVNPSFIWHFNLSTSI 104 (622)
Q Consensus 31 ~l~~L~~L~L~~n~i~~~------~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L 104 (622)
.+.+|++|++++|.+.+. ++|++|++++|.+++.+ .++.+++|++|++++|++++. ..+..+ ++|
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~----~~~~l~~L~~L~l~~n~i~~l----~~l~~l-~~L 114 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKDL----SSLKDL-KKL 114 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCG----GGGTTC-TTC
T ss_pred HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc----ccccCcccccccccccccccc----cccccc-ccc
Confidence 478899999999988655 89999999999998875 368899999999999999864 357778 999
Q ss_pred cEEEccCCCCCCCCCchhhhcccccCCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccc
Q 037539 105 ETLDLSDNNLPSSSVYPWLLNLKAFQHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGC 184 (622)
Q Consensus 105 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~ 184 (622)
+.|++++|.+.. + ..+..+++++.+++++|.+++ +..+..+++|+++++++|++++..+ +..
T Consensus 115 ~~L~l~~~~~~~--~-------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-------l~~ 176 (210)
T d1h6ta2 115 KSLSLEHNGISD--I-------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------LAG 176 (210)
T ss_dssp CEEECTTSCCCC--C-------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-------GTT
T ss_pred cccccccccccc--c-------ccccccccccccccccccccc--ccccccccccccccccccccccccc-------ccC
Confidence 999999999864 2 235788999999999999984 3457889999999999999986433 455
Q ss_pred cCCCcCEEEccCCcccccCCCCCCCCCCCEEEeec
Q 037539 185 VVNSLEGLYLRWNDFTGPIPHLGGFSSLEAWSLDV 219 (622)
Q Consensus 185 ~~~~L~~L~L~~n~~~~~~~~l~~l~~L~~L~L~~ 219 (622)
+++ |++|++++|+++. ++.+.++++|++|++++
T Consensus 177 l~~-L~~L~Ls~N~i~~-l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTK-LQNLYLSKNHISD-LRALAGLKNLDVLELFS 209 (210)
T ss_dssp CTT-CCEEECCSSCCCB-CGGGTTCTTCSEEEEEE
T ss_pred CCC-CCEEECCCCCCCC-ChhhcCCCCCCEEEccC
Confidence 555 9999999999985 45699999999999974
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.1e-16 Score=150.03 Aligned_cols=182 Identities=19% Similarity=0.153 Sum_probs=102.0
Q ss_pred CCCCEEEccCCccccc-CCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCc-ccccCchhHHhhcccccE
Q 037539 316 DRLFILNLANNRLSGK-IPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNA-IFGEIPTWIGESLQNLIV 393 (622)
Q Consensus 316 ~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~ 393 (622)
.+|++||+++|.+++. +...+..+++|++|++++|.+++..+..+..+++|++|++++|. +++..-..+.+++++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 4566666666665532 22334556666666666666655555556666667777776653 322222233345667777
Q ss_pred eecCCCc-CcccCChhhhHhHhhhcCCccEEECCCCc--CCcc-chHHhhcccccceeecCCcc-ccCCCccccCCCCCC
Q 037539 394 LSLKSNK-FHGNIPYQFENEYKSTLGLVRCLDLSSNK--LDGA-IPEEIMDLVGLIALNLSRNH-LTGPITPKIGELTSL 468 (622)
Q Consensus 394 L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 468 (622)
|++++|. +++. .+.......++.|+.|+++++. +++. +...+.++++|++|++++|. +++..+..+..+++|
T Consensus 126 L~ls~c~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L 202 (284)
T d2astb2 126 LNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202 (284)
T ss_dssp EECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cccccccccccc---cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence 7776653 2211 1111111234667777776642 3322 22233456677777777653 555556666667777
Q ss_pred CEEeCCCC-ccCccCCccccCCCCCCEEECcCC
Q 037539 469 DFLDLSRN-LFSGSIPCSLSQLSGLGVLDLSYN 500 (622)
Q Consensus 469 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~N 500 (622)
++|+|++| .+++.....+..+++|++|+++++
T Consensus 203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 77777774 455555555666777777777665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.6e-16 Score=150.37 Aligned_cols=224 Identities=19% Similarity=0.200 Sum_probs=158.8
Q ss_pred CCcEEEccCCcCcccC----CCCcccEEeCCCCcCccc-cCccccCCCCCCEEEccCCcccccCCCccCCCCCccEEeee
Q 037539 274 KLSYLNLSNNHFRGKL----PDLSLRFDDLSSNLLSGG-LPDCWLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLH 348 (622)
Q Consensus 274 ~L~~L~l~~n~l~~~~----~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 348 (622)
....+.++...+.... ....+++|+++++.+... +...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 3556666555433221 223788999998887653 45567889999999999999988777888899999999999
Q ss_pred CCc-CCCC-CCccccCCCCccEEEccCCc-cccc-CchhHHhhcccccEeecCCCc--CcccCChhhhHhHhhhcCCccE
Q 037539 349 NNR-LTGK-LPSPLRNFSQLRVLDLEKNA-IFGE-IPTWIGESLQNLIVLSLKSNK--FHGNIPYQFENEYKSTLGLVRC 422 (622)
Q Consensus 349 ~n~-i~~~-~~~~l~~l~~L~~L~L~~n~-i~~~-~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~l~~L~~ 422 (622)
+|. +++. +......+++|++|++++|. +.+. +...+....++|+.|+++++. +++.. ...+...+++|++
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~----l~~l~~~~~~L~~ 179 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD----LSTLVRRCPNLVH 179 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH----HHHHHHHCTTCSE
T ss_pred ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccc----ccccccccccccc
Confidence 964 5422 12234578999999999974 3222 223333345799999999863 33221 1223347899999
Q ss_pred EECCCC-cCCccchHHhhcccccceeecCCc-cccCCCccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEECcC
Q 037539 423 LDLSSN-KLDGAIPEEIMDLVGLIALNLSRN-HLTGPITPKIGELTSLDFLDLSRNLFSGS-IPCSLSQLSGLGVLDLSY 499 (622)
Q Consensus 423 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~ 499 (622)
|++++| .+++..+..+.++++|++|++++| .+++.....++++++|+.|+++++ ++.. .+.....+|.|+ +..
T Consensus 180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~ 255 (284)
T d2astb2 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INC 255 (284)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESC
T ss_pred cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccC
Confidence 999987 477778888999999999999996 577777778899999999999998 4422 222224455554 566
Q ss_pred CcCccc
Q 037539 500 NNLSGK 505 (622)
Q Consensus 500 N~l~~~ 505 (622)
++++..
T Consensus 256 ~~ls~~ 261 (284)
T d2astb2 256 SHFTTI 261 (284)
T ss_dssp CCSCCT
T ss_pred ccCCCC
Confidence 666643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=3.7e-16 Score=155.94 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=55.9
Q ss_pred ccCCCCCCEEEccCCccccc-----CCCccCCCCCccEEeeeCCcCCCC----CCccccCCCCccEEEccCCcccccCch
Q 037539 312 WLHFDRLFILNLANNRLSGK-----IPDSMGFLNNIWTLNLHNNRLTGK----LPSPLRNFSQLRVLDLEKNAIFGEIPT 382 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~ 382 (622)
+..++.|+.|++++|+++.. +...+...++|+.|++++|.++.. +...+..+++|++|++++|.+.+....
T Consensus 182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~ 261 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261 (344)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence 34455666666666665432 122344455566666665555321 223344555555666655555332222
Q ss_pred hHHhh-----cccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCC
Q 037539 383 WIGES-----LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLD 431 (622)
Q Consensus 383 ~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 431 (622)
.+.+. .+.|++|++++|+++......+........+.|+.|++++|.+.
T Consensus 262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 22211 13455555555555443333333322223445555555555553
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=1.2e-15 Score=152.17 Aligned_cols=143 Identities=18% Similarity=0.107 Sum_probs=83.1
Q ss_pred CCCCccEEEccCCcccccCchhH---HhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----c
Q 037539 362 NFSQLRVLDLEKNAIFGEIPTWI---GESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----I 434 (622)
Q Consensus 362 ~l~~L~~L~L~~n~i~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~ 434 (622)
..+.|+.+++++|.+.......+ ....+.|+.|++++|.++......+.......+++|+.|++++|.++.. +
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence 34556666666666532221111 1235567777777776653322221222233567777777777776532 3
Q ss_pred hHHhhcccccceeecCCccccCCCccc----cC--CCCCCCEEeCCCCccCcc----CCccc-cCCCCCCEEECcCCcCc
Q 037539 435 PEEIMDLVGLIALNLSRNHLTGPITPK----IG--ELTSLDFLDLSRNLFSGS----IPCSL-SQLSGLGVLDLSYNNLS 503 (622)
Q Consensus 435 ~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~--~l~~L~~L~Ls~n~l~~~----~~~~l-~~l~~L~~L~ls~N~l~ 503 (622)
...+..+++|++|+|++|.+++..... +. ..+.|++|++++|+|+.. +...+ .+.+.|++|++++|++.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 345567777788888888776543322 22 236788888888887643 22233 25678888888888886
Q ss_pred c
Q 037539 504 G 504 (622)
Q Consensus 504 ~ 504 (622)
.
T Consensus 316 ~ 316 (344)
T d2ca6a1 316 E 316 (344)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.8e-14 Score=122.57 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=79.4
Q ss_pred ccCCCCCCEEEccCCcccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccc
Q 037539 312 WLHFDRLFILNLANNRLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNL 391 (622)
Q Consensus 312 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 391 (622)
+.++..+++|+|++|+|+. ++..+..+++|+.|++++|.++. + +.+..+++|++|++++|.+ ..++..++..+++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL 89 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccc-cCCCcccccccccc
Confidence 4566677777777777774 35555667777777777777763 3 3467777777777777777 55655555567777
Q ss_pred cEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc---hHHhhcccccceee
Q 037539 392 IVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI---PEEIMDLVGLIALN 448 (622)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 448 (622)
+.|++++|++...... .....+++|++|++++|+++... +..+..+++|+.||
T Consensus 90 ~~L~L~~N~i~~~~~l----~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDL----DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGG----GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccceeccccccccccc----cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 7777777776532110 11125666666666666665221 12345555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4e-14 Score=123.59 Aligned_cols=109 Identities=18% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCC-CCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPH-LGG 208 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~-l~~ 208 (622)
.++.++++|+|++|+|+. ++..+..+++|+.|++++|+++... . +..+++ |++|++++|+++...+. +..
T Consensus 15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~--~-----~~~l~~-L~~L~ls~N~i~~l~~~~~~~ 85 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD--G-----FPLLRR-LKTLLVNNNRICRIGEGLDQA 85 (162)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC--C-----CCCCSS-CCEEECCSSCCCEECSCHHHH
T ss_pred cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC--C-----cccCcc-hhhhhcccccccCCCcccccc
Confidence 344445555555555442 2333344455555555555544321 1 333333 55555555555544443 344
Q ss_pred CCCCCEEEeecccCCccCc-cccCCCCCCCEEEccCCCCc
Q 037539 209 FSSLEAWSLDVNCLNGTID-KSLSQLSKLESLSLDGNSLR 247 (622)
Q Consensus 209 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 247 (622)
+++|++|++++|.++.... ..+..+++|++|++++|.++
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccc
Confidence 5555555555555543211 24555666666666666554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.9e-13 Score=113.19 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=54.3
Q ss_pred CCCccccEEEeecccCCCCCchhhcCCccCcEeEeecCCCCCcCchhhhhccccccCCCcCEEEccCCcccccCCCCCCC
Q 037539 130 QHMVSLKSLYLSDSELEGGIPKFFGNMCSLKKLRLSYNKLSGQYSQVIQNLSFGCVVNSLEGLYLRWNDFTGPIPHLGGF 209 (622)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~l~~~~~~L~~L~L~~n~~~~~~~~l~~l 209 (622)
..+++|++|++++|+++ .+|+.++.+++|+.|++++|.+++. +.++.+
T Consensus 17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-------------------------------~~~~~l 64 (124)
T d1dcea3 17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-------------------------------DGVANL 64 (124)
T ss_dssp GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-------------------------------GGGTTC
T ss_pred ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-------------------------------Cccccc
Confidence 44455555555555555 3344455555555555555555432 224444
Q ss_pred CCCCEEEeecccCCccC-ccccCCCCCCCEEEccCCCCcccccccccCCCCcccCCchhHHhcCCCCcEE
Q 037539 210 SSLEAWSLDVNCLNGTI-DKSLSQLSKLESLSLDGNSLRAISLCILTSPIGISDSIPDWFWDLSNKLSYL 278 (622)
Q Consensus 210 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~L 278 (622)
++|++|++++|+++... ...+..+++|++|++++|+++... .++..+....|+++.+
T Consensus 65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~------------~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE------------GIQERLAEMLPSVSSI 122 (124)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS------------SCTTHHHHHCTTCSEE
T ss_pred cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc------------cHHHHHHHHCcCcceE
Confidence 44555555555544322 134556666666666666665432 3445555555566654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=4e-13 Score=111.24 Aligned_cols=85 Identities=34% Similarity=0.365 Sum_probs=46.5
Q ss_pred hcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCE
Q 037539 416 TLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSI-PCSLSQLSGLGV 494 (622)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~ 494 (622)
.++.|++|++++|+++ .+|..++.+++|++|++++|.+++ ++ .+..+++|++|++++|++++.. ...+..+++|+.
T Consensus 18 ~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~ 94 (124)
T d1dcea3 18 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 94 (124)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence 4555555555555555 344455555666666666666553 22 3555666666666666665332 234555566666
Q ss_pred EECcCCcCc
Q 037539 495 LDLSYNNLS 503 (622)
Q Consensus 495 L~ls~N~l~ 503 (622)
|++++|+++
T Consensus 95 L~l~~N~i~ 103 (124)
T d1dcea3 95 LNLQGNSLC 103 (124)
T ss_dssp EECTTSGGG
T ss_pred EECCCCcCC
Confidence 666666654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.33 E-value=7.5e-14 Score=126.35 Aligned_cols=131 Identities=26% Similarity=0.278 Sum_probs=85.8
Q ss_pred CCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc
Q 037539 355 KLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI 434 (622)
Q Consensus 355 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 434 (622)
.++..+..+++|++|++++|.| ..++ .+. .+++|++|++++|.++.. +.... .++.|+.|++++|+++. +
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I-~~i~-~l~-~l~~L~~L~Ls~N~i~~i-~~~~~-----~~~~L~~L~l~~N~i~~-l 108 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNI-EKIS-SLS-GMENLRILSLGRNLIKKI-ENLDA-----VADTLEELWISYNQIAS-L 108 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEE-SCCC-CHH-HHTTCCEEECCEEEECSC-SSHHH-----HHHHCCEEECSEEECCC-H
T ss_pred hhhhHHhcccccceeECcccCC-CCcc-ccc-CCccccChhhcccccccc-ccccc-----ccccccccccccccccc-c
Confidence 3445566677777777777776 4454 233 577777777777776632 22221 34567777777777763 2
Q ss_pred hHHhhcccccceeecCCccccCCCc-cccCCCCCCCEEeCCCCccCccCCcc----------ccCCCCCCEEE
Q 037539 435 PEEIMDLVGLIALNLSRNHLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPCS----------LSQLSGLGVLD 496 (622)
Q Consensus 435 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~ 496 (622)
+.+..+++|+.|++++|++++... ..+..+++|+.|+|++|++....+.. +..+|+|+.||
T Consensus 109 -~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 109 -SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred -ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 357777888888888888874322 45777888888888888876443322 45678888876
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.4e-12 Score=109.56 Aligned_cols=112 Identities=17% Similarity=0.021 Sum_probs=88.9
Q ss_pred cccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCC-cCCccchHHhhcccccceeecCCccccCCCccccCCCC
Q 037539 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSN-KLDGAIPEEIMDLVGLIALNLSRNHLTGPITPKIGELT 466 (622)
Q Consensus 388 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 466 (622)
+...+.++.+++.+.. .|..+. .+++|++|++++| .++...+.+|.++++|+.|++++|+|+...+..|..++
T Consensus 7 c~~~~~l~c~~~~~~~-~p~~l~-----~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 80 (156)
T d2ifga3 7 PHGSSGLRCTRDGALD-SLHHLP-----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (156)
T ss_dssp CSSSSCEECCSSCCCT-TTTTSC-----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred cCCCCeEEecCCCCcc-Cccccc-----CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc
Confidence 4456778888887764 344443 6788999999766 48867777899999999999999999977788899999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEECcCCcCcccC
Q 037539 467 SLDFLDLSRNLFSGSIPCSLSQLSGLGVLDLSYNNLSGKI 506 (622)
Q Consensus 467 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 506 (622)
+|++|+|++|+++...+..|..+ .|+.|+|++|++.|.+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C 119 (156)
T d2ifga3 81 RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC 119 (156)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred cccceeccCCCCcccChhhhccc-cccccccCCCcccCCc
Confidence 99999999999996655556544 6999999999998764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.26 E-value=1.6e-13 Score=124.19 Aligned_cols=134 Identities=23% Similarity=0.243 Sum_probs=90.2
Q ss_pred CCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCCcccccCchhHHhhcccccEeecCCCcCcccCChhhhHh
Q 037539 333 PDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKNAIFGEIPTWIGESLQNLIVLSLKSNKFHGNIPYQFENE 412 (622)
Q Consensus 333 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 412 (622)
+..+..+++|++|++++|+|+. ++ .+..+++|++|++++|.+ ..+|.... .+++|+.|++++|+++.. + .+
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~-~~~~L~~L~l~~N~i~~l-~-~~--- 111 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDA-VADTLEELWISYNQIASL-S-GI--- 111 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEE-CSCSSHHH-HHHHCCEEECSEEECCCH-H-HH---
T ss_pred hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccc-cccccccc-cccccccccccccccccc-c-cc---
Confidence 3456667777777887777763 33 477777888888888877 55654333 456788888888877742 1 12
Q ss_pred HhhhcCCccEEECCCCcCCccc-hHHhhcccccceeecCCccccCCCccc----------cCCCCCCCEEeCCCCccC
Q 037539 413 YKSTLGLVRCLDLSSNKLDGAI-PEEIMDLVGLIALNLSRNHLTGPITPK----------IGELTSLDFLDLSRNLFS 479 (622)
Q Consensus 413 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~Ls~n~l~ 479 (622)
..+++|+.|++++|+++... ...+..+++|+.|++++|.+....+.. +..+|+|+.|| +..++
T Consensus 112 --~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 112 --EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp --HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred --cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 25777888888888887432 246778888888888888776433321 55688888876 55554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.1e-10 Score=100.67 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=49.3
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEccCC-cccccCCCccCCCCCccEEeeeCCcCCCCCCccccCCCCccEEEccCC
Q 037539 296 FDDLSSNLLSGGLPDCWLHFDRLFILNLANN-RLSGKIPDSMGFLNNIWTLNLHNNRLTGKLPSPLRNFSQLRVLDLEKN 374 (622)
Q Consensus 296 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 374 (622)
.++.+++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...+.+|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3444444443 22334444555555555433 244444444555555555555555555444445555555555555555
Q ss_pred cccccCchhHHhhcccccEeecCCCcC
Q 037539 375 AIFGEIPTWIGESLQNLIVLSLKSNKF 401 (622)
Q Consensus 375 ~i~~~~~~~~~~~l~~L~~L~L~~n~l 401 (622)
++ ..+|..++. ..+|+.|+|++|++
T Consensus 91 ~l-~~l~~~~~~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 91 AL-ESLSWKTVQ-GLSLQELVLSGNPL 115 (156)
T ss_dssp CC-SCCCSTTTC-SCCCCEEECCSSCC
T ss_pred CC-cccChhhhc-cccccccccCCCcc
Confidence 55 344444442 22444444444444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.3e-08 Score=85.34 Aligned_cols=80 Identities=25% Similarity=0.165 Sum_probs=39.6
Q ss_pred cCCccEEECCCCcCCcc--chHHhhcccccceeecCCccccCCCccccCCCCCCCEEeCCCCccCccCCc-------ccc
Q 037539 417 LGLVRCLDLSSNKLDGA--IPEEIMDLVGLIALNLSRNHLTGPITPKIGELTSLDFLDLSRNLFSGSIPC-------SLS 487 (622)
Q Consensus 417 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~l~ 487 (622)
++.|++|+|++|+++.. ++..+..+++|+.|+|++|.+++..+-.+.....|+.|++++|++.....+ .+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 44444444445444432 223445556666666666665533222222334566666666666543322 134
Q ss_pred CCCCCCEEE
Q 037539 488 QLSGLGVLD 496 (622)
Q Consensus 488 ~l~~L~~L~ 496 (622)
.+|+|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 566666664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=8e-08 Score=82.82 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=54.3
Q ss_pred HHhhcccccEeecCCCcCcccCC--hhhhHhHhhhcCCccEEECCCCcCCccchHHhhcccccceeecCCccccCCCcc-
Q 037539 384 IGESLQNLIVLSLKSNKFHGNIP--YQFENEYKSTLGLVRCLDLSSNKLDGAIPEEIMDLVGLIALNLSRNHLTGPITP- 460 (622)
Q Consensus 384 ~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 460 (622)
++..+++|++|++++|+++...+ ..+. .+++|+.|+|++|.++...+-.+.....|++|++++|.+.+....
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~-----~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~ 134 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQ-----KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHH-----HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHh-----hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence 33457777777777777765332 1222 577788888888887754443444455688888888888754432
Q ss_pred ------ccCCCCCCCEEe
Q 037539 461 ------KIGELTSLDFLD 472 (622)
Q Consensus 461 ------~l~~l~~L~~L~ 472 (622)
.+..+|+|+.||
T Consensus 135 ~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 135 STYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHTTSTTCCEET
T ss_pred hhHHHHHHHHCCCCCEEC
Confidence 255678888875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=1.7e-06 Score=74.63 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=30.5
Q ss_pred hhcccccceeecCCccccCCC----ccccCCCCCCCEEeCCCCccCcc-------CCccccCCCCCCEEECcCCc
Q 037539 438 IMDLVGLIALNLSRNHLTGPI----TPKIGELTSLDFLDLSRNLFSGS-------IPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 438 ~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~ls~N~ 501 (622)
+...+.|++|+|++|.+++.. ...+...++|++|++++|.+... +.+.+...++|+.|+++++.
T Consensus 68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 334445555555555544221 12344445566666655544321 22334445666666665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.06 E-value=2.3e-06 Score=73.69 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=43.3
Q ss_pred ccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCccc----hHHhhcccccceeecCCccccCC-------
Q 037539 389 QNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGAI----PEEIMDLVGLIALNLSRNHLTGP------- 457 (622)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~------- 457 (622)
+.|++|++++|.+.......+...+ ...+.|++|+|++|.+++.. ..++...++|++|++++|.+...
T Consensus 44 ~~L~~L~Ls~n~l~~~~~~~la~~L-~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~ 122 (167)
T d1pgva_ 44 KHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 122 (167)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CccceeeccccccchhHHHHHhhhh-hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence 4455555555555433333322211 24455666666666555322 22344555666666666544321
Q ss_pred CccccCCCCCCCEEeCCCCc
Q 037539 458 ITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 458 ~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+...+...++|+.|+++.+.
T Consensus 123 l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 123 MMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCccEeeCcCCC
Confidence 22334445666777666553
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.66 E-value=1.5e-05 Score=68.38 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=26.5
Q ss_pred cccccceeecCCccccCCC----ccccCCCCCCCEEeC--CCCccCcc----CCccccCCCCCCEEECcCCc
Q 037539 440 DLVGLIALNLSRNHLTGPI----TPKIGELTSLDFLDL--SRNLFSGS----IPCSLSQLSGLGVLDLSYNN 501 (622)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~ls~N~ 501 (622)
..+.++.+++++|.+++.. ...+...++|+.++| ++|.+... +.+.+...+.|+.|+++.++
T Consensus 72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 3444444444444443221 123344455554333 23344321 22334455556666655443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.66 E-value=2e-05 Score=67.66 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=42.1
Q ss_pred cccccEeecCCCcCcccCChhhhHhHhhhcCCccEEECCCCcCCcc----chHHhhcccccceeec--CCccccCC----
Q 037539 388 LQNLIVLSLKSNKFHGNIPYQFENEYKSTLGLVRCLDLSSNKLDGA----IPEEIMDLVGLIALNL--SRNHLTGP---- 457 (622)
Q Consensus 388 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~---- 457 (622)
.+.|++|++++|.++......+...+ ...+.++.+++++|.+... +...+...++|+.++| ++|.+.+.
T Consensus 45 n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~ 123 (166)
T d1io0a_ 45 NTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 123 (166)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred CCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence 34455555555555433333332221 2445555666655555432 2234445555655333 34445432
Q ss_pred CccccCCCCCCCEEeCCCCc
Q 037539 458 ITPKIGELTSLDFLDLSRNL 477 (622)
Q Consensus 458 ~~~~l~~l~~L~~L~Ls~n~ 477 (622)
+.+.+...++|+.|+++.+.
T Consensus 124 La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 124 IANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeCcCCC
Confidence 22334456666777666554
|