Citrus Sinensis ID: 037555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
AYAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV
Secondary Structure (PSIPRED)
ccccccccEEEccccccEEEEEccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEccccccccccEEEEEEccccEEEEEccccccccccccccccccEEEEEcccccccccEEEEEEEcccccccccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccccccEEcEcccccEEEEcccccEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
AYAATRETVerhgndgldtlesvpdavpavfteppiedqlawhtlwpeshklyghgnELFSLCCdhqgklvasscKAQSTAAAEIWLWEVGSwkamgrlqshsltvtqirfshddnlllsvsrdrqFSVFAIQRTGTGEIDYQLIARQEAHKRIIwscswnpfghefatgsrdktVKIWAVENKSSVKQilalppfnssvTALSWvgldrqknhgflAVGMESGVIELWSISVnrtndvstpapstaniiirfdpfaCHVAAVNRMAWkthekpknsrtmqlascgadntVRVFQVNV
Flexible Loop (DISEMBL)
ayaatretverhgndgldtlesvPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVkqilalppfNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKthekpknsrtmqlascgadntVRVFQVNV
Low Complexity Region (SEG)
AYAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV
Disordered region (IsUnstruct)
*************************AVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT****************************
Disordered Region (DISOPRED)
AYAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV
Disordered Region (DISEMBL)
**********RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKL**********AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH********MQLASCGADNTVRVFQVNV
Disordered Region (DISPRO)
**AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AYAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
F4I1S7	838	Elongator complex protein	yes	no	0.966	0.343	0.658	1e-113
Q496Z0	821	Elongator complex protein	yes	no	0.879	0.319	0.387	3e-46
Q86H45	901	Probable elongator comple	yes	no	0.889	0.294	0.369	4e-46
Q91WG4	831	Elongator complex protein	yes	no	0.882	0.316	0.381	2e-44
Q5EBD9	824	Elongator complex protein	yes	no	0.899	0.325	0.370	5e-42
Q6IA86	826	Elongator complex protein	no	no	0.892	0.322	0.357	2e-40
Q7K4B3	794	Probable elongator comple	yes	no	0.859	0.322	0.353	1e-38
Q05AM5	821	Elongator complex protein	yes	no	0.879	0.319	0.367	3e-36
O94533	760	Elongator complex protein	yes	no	0.859	0.336	0.332	2e-33
P42935	788	Elongator complex protein	yes	no	0.691	0.261	0.366	1e-28

>sp|F4I1S7|ELP2_ARATH Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1

 Score =  409 bits (1050), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/293 (65%), Positives = 242/293 (82%), Gaps = 5/293 (1%)

Query: 4   ATRETVERHGN-DGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSL 62
           ++ E +ER+G  +GLDT E+VP+A PA   EPPIEDQLA+HTLWPESHKLYGHGNELFSL
Sbjct: 545 SSSEPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSL 604

Query: 63  CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122
           C DH+G LVASSCKAQS + AEIWLWEVG+WKA+GRLQSHSLTVT + FS+DD LLLSVS
Sbjct: 605 CSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVS 664

Query: 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182
           RDR FSVF+IQRT  GE+ ++L+A+ EAHKRIIW+CSWNPFGH+FAT SRDKTVKIW+VE
Sbjct: 665 RDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVE 724

Query: 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242
           N + +KQIL LPPF SSVTA++W GLDR +  G +AVGMESG+IEL ++ +  T + +T 
Sbjct: 725 NDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEGTT- 783

Query: 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ-LASCGADNTVRVF 294
             +TA + +R +PF CHV+AVNR+AW+  EK +++++++ L SCG DN VRVF
Sbjct: 784 --ATAALALRLEPFMCHVSAVNRLAWRPTEKCESNQSLRWLTSCGDDNCVRVF 834

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (By similarity). Promotes organs development by modulating cell division rate. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. Accelerator of defense gene induction required for rapid defense gene induction, and for the establishment of both basal and effector-triggered immunity (ETI), in a NPR1-independent manner, but is not required for systemic acquired resistance (SAR) establishment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q496Z0|ELP2_RAT Elongator complex protein 2 OS=Rattus norvegicus GN=Elp2 PE=2 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 154/289 (53%), Gaps = 27/289 (9%)

Query: 28  PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
           PAV +EPP ED L  +TLWPE  KLYGHG E+F + C++   L+AS+CKA     A I L
Sbjct: 537 PAVLSEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNNSKTLLASACKAAQKEHAAIIL 596

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
           W   SWK +  L  H+LTVTQ+ FS DD  LL+VSRDR +S++  Q   + E D  + L 
Sbjct: 597 WSTTSWKQVQSLAYHTLTVTQMAFSPDDKFLLAVSRDRTWSLWKRQDVTSAEFDPFFSLF 656

Query: 146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS------SVKQILALPP 195
           A        H RIIWSC W+P    F TGSRDK V +W   N S       +    ++  
Sbjct: 657 AFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECNSSYNPMEHPINPCSSILD 716

Query: 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL--WSISVNRTNDVSTPAPSTANIIIRF 253
             S VTA+S   +        +AVG+ESG I +  WS +   T D ++   +T       
Sbjct: 717 VGSCVTAVSVCPVLNPAQRYIVAVGLESGKICIYSWSKTNQETKDWTSCVETT------- 769

Query: 254 DPFACHVAAVNRMAWK-----THEKPKNSRTMQLASCGADNTVRVFQVN 297
            P   H   + R+ WK     T +  + +  +  ASCG D+TV++++VN
Sbjct: 770 -PSQSHTLGIRRLCWKSCSGSTEQSEEGTEWLDFASCGEDHTVKIYRVN 817

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Rattus norvegicus (taxid: 10116)

>sp|Q86H45|ELP2_DICDI Probable elongator complex protein 2 OS=Dictyostelium discoideum GN=elp2 PE=3 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 149/276 (53%), Gaps = 11/276 (3%)

Query: 28  PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
           P V +EPP E+ L   +LWPE HK YGHGNE+ ++ C   G  +AS+C+A S   A + +
Sbjct: 627 PEVLSEPPFEEHLLQSSLWPEIHKFYGHGNEIVAVACSADGMYLASTCRASSADQATVRI 686

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
           W V +WK    L+ H+LTV  + FSH+   LL VSRDR ++++    + + E   ++I+ 
Sbjct: 687 WNVSNWKECANLKGHTLTVVNLSFSHNSKYLLGVSRDRMWTLWERSASNSEEPFVKVISA 746

Query: 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA--LPPFNSSVTALSW 205
            ++H RIIWS SW+     FATG+RDK VK+W ++N   +K   A  LP F S VT + +
Sbjct: 747 PKSHGRIIWSGSWSHDDKFFATGARDKLVKVWNLDNIKDIKNACASTLPAFGSGVTCVEF 806

Query: 206 VGLDRQ--KNHG--FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA 261
                +    HG   LAVG + G I +W      T   S P       +    P   H  
Sbjct: 807 APKSSKFTGEHGDHLLAVGEDDGKITIW----KSTTSTSNPKSLDWTCVHTISPLISHTL 862

Query: 262 AVNRMAWK-THEKPKNSRTMQLASCGADNTVRVFQV 296
            V R+ W+ T     NS T Q+ +C  D++VR+F +
Sbjct: 863 DVRRIRWRDTPTINGNSLTYQIVTCSVDHSVRIFNI 898

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG4|ELP2_MOUSE Elongator complex protein 2 OS=Mus musculus GN=Elp2 PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 155/296 (52%), Gaps = 33/296 (11%)

Query: 28  PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
           PAV  EPP ED L  +TLWPE  KLYGHG E+  + C++   L+AS+CKA     A I L
Sbjct: 539 PAVLNEPPTEDHLLQNTLWPEIQKLYGHGYEIVCVACNNSKTLLASACKASQKEHAAIIL 598

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
           W   SWK +  L  H+LTVTQ+ FS DD  LL+VSRDR +S++  Q   + E D  + L 
Sbjct: 599 WSTASWKQVQSLAFHTLTVTQMTFSPDDKFLLAVSRDRTWSLWKRQDATSSEFDPFFSLF 658

Query: 146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-------VKQILALP 194
           A        H RIIWSC W+P    F TGSRDK V +W  E KSS       ++   ++ 
Sbjct: 659 AFTNKITSVHSRIIWSCDWSPDNKYFFTGSRDKKVVVWG-ECKSSHNPMEHPIRPCSSIL 717

Query: 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD 254
              SSVTA+S   +        +A+G+ESG I ++S   N+TN       S     +  +
Sbjct: 718 DVGSSVTAVSVCPVLNPAQRYIVAIGLESGKICIYSW--NKTNQEINDWTSC----VETN 771

Query: 255 PFACHVAAVNRMAWK-------------THEKPKNSRTMQLASCGADNTVRVFQVN 297
           P   H   + R+ WK             T +  +    +  ASCG D+TV++++VN
Sbjct: 772 PSQSHSLGIRRLCWKSCSDDDDDDDDDDTEQSEEGPEWLHFASCGEDHTVKIYRVN 827

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Mus musculus (taxid: 10090)

>sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 154/297 (51%), Gaps = 29/297 (9%)

Query: 22  SVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA 81
           S P+  P   TEPP ED L  +TLWPE  KLYGHG E+F++ C+    ++AS+CKA    
Sbjct: 530 SQPNFQPLNLTEPPTEDHLLQNTLWPEVQKLYGHGYEIFAVACNSAKTVIASACKASKRE 589

Query: 82  AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR--TGTGE 139
            A I LW   SWK +  L  H+LTVTQ+ FS DD  LL VSRDR +S++  Q       E
Sbjct: 590 HAAIILWSTTSWKQLQSLSYHNLTVTQMAFSPDDEFLLVVSRDRNWSLWKKQEGIPEQTE 649

Query: 140 IDYQLIARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWA-------VENKSS-- 186
             + L A  +     H RIIW+C W P    F TGSRDK V +W         E KSS  
Sbjct: 650 PTFTLYASTDKNSCVHSRIIWACDWTPDSKYFVTGSRDKKVIVWGDCSLPSMNEEKSSAL 709

Query: 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT-NDVSTPAPS 245
           ++   +L     S+TA+S   +        +AVG++ G+I+L+    + T ND       
Sbjct: 710 IRPCSSLLDTGDSITAVSVSQVLALDGSYIIAVGLDCGIIQLYKWKHSGTVNDWLKCLAM 769

Query: 246 TANIIIRFDPFACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQV 296
             +++        H   V ++ W++      H+   N   +QLASCGAD+ V++F V
Sbjct: 770 DQSLL-------SHTLTVKQLCWRSCLGRAGHDDRDNGDWIQLASCGADHCVKIFDV 819

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IA86|ELP2_HUMAN Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=1 SV=2

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 22/288 (7%)

Query: 28  PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
           P++ TEPP ED L  +TLWPE  KLYGHG E+F + C+    L+AS+CKA     A I L
Sbjct: 539 PSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIIL 598

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
           W   SWK +  L  HSLTVTQ+ FS ++  LL+VSRDR +S++  Q T + E +  + L 
Sbjct: 599 WNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVFSLF 658

Query: 146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS------SVKQILALPP 195
           A        H RIIWSC W+P    F TGSRDK V +W   + +      ++    ++  
Sbjct: 659 AFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLD 718

Query: 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255
              +VTA+S   +        +AVG+E G I L++    +T+ V  P  +     +    
Sbjct: 719 VGGAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTW--KKTDQV--PEINDWTHCVETSQ 774

Query: 256 FACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQVN 297
              H  A+ ++ WK        ++ + +  +  ASCG D+TV++ +VN
Sbjct: 775 SQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHTVKIHRVN 822

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Homo sapiens (taxid: 9606)

>sp|Q7K4B3|ELP2_DROME Probable elongator complex protein 2 OS=Drosophila melanogaster GN=Elp2 PE=1 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 150/294 (51%), Gaps = 38/294 (12%)

Query: 21  ESVPDA--VPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQ 78
           +  PD   VP     PP E+ L  +TLWPE  KLYGHG E+F+L     G L+AS+CKA 
Sbjct: 522 DEYPDNYFVPIALETPPQEETLMQNTLWPELQKLYGHGYEIFALAATADGSLLASTCKAS 581

Query: 79  STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138
           +   A+I LW   +WK + +L  H LTVTQ+ FS D   LLSVSRDR++ ++  Q +   
Sbjct: 582 NAEHAQIILWNPSNWKQIQKLSGHQLTVTQLSFSPDSRYLLSVSRDRRWCLYERQDS--- 638

Query: 139 EIDYQLIARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE--------NKSS 186
            + YQL+A  +     H RIIWSC W+  G  F T SRD  V +W  E        N   
Sbjct: 639 SVSYQLVASTDKSNGVHTRIIWSCDWSHDGQFFVTSSRDGKVVVWKKEEDCKESSLNGWQ 698

Query: 187 VKQILALPPFNSSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP 244
              +L L   N S+TA+++    L    +   LA+G E+G+I+++         +S    
Sbjct: 699 ANGVLELK--NESITAVAFSNSYLSGTDDTYILALGTETGLIKIYQFVRGAWKLLSDLNK 756

Query: 245 STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           S A           H   V R+ ++        + +QLASCG D+ VR++ + +
Sbjct: 757 SQA-----------HHLTVRRLQFRP------GKQLQLASCGEDHLVRIYDIKL 793

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (By similarity). Involved in the regulation of the STAT pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q05AM5|ELP2_DANRE Elongator complex protein 2 OS=Danio rerio GN=elp2 PE=2 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 147/299 (49%), Gaps = 37/299 (12%)

Query: 28  PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
           P    EPP ED L  +TLWPE  KLYGHG E+F L  D    +VAS+CKA     A I L
Sbjct: 529 PLKLAEPPTEDDLLQNTLWPEVQKLYGHGFEMFCLASDCARTVVASACKASKAEHASILL 588

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID----YQ 143
           W   SWK +  L  HSLT+TQ+ FS +  LLL+VSRDR +S++   R G  ++D    + 
Sbjct: 589 WSTASWKQLQSLSCHSLTITQMAFSPNGQLLLAVSRDRTWSLW---RRGNPDLDTEAMFS 645

Query: 144 LIAR----QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW--AVEN-------KSSVKQI 190
           L A        H RIIWSC W+     F T SRDK V IW  AV          + V   
Sbjct: 646 LYANTSKDTSVHTRIIWSCDWSADNKYFVTSSRDKKVIIWGHAVSGVAVGEGEDARVTSC 705

Query: 191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII 250
            ++     S TA+S        +   LAVG+E+G I L+        D+S    S ++  
Sbjct: 706 SSVLDVGDSATAVSICPFLCSDHSYLLAVGLENGQILLYKW--KPLEDLS----SESDWS 759

Query: 251 IRFDPFAC--HVAAVNRMAWK---------THEKPKNSRTMQLASCGADNTVRVFQVNV 298
              D  AC  H   V R+ W+           +  +    +QLAS GAD+ V++F +N+
Sbjct: 760 RCKDTDACQGHTMVVKRLRWRPRLGRGGHGGQDSKEEQAWVQLASAGADHVVKIFDINL 818

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Danio rerio (taxid: 7955)

>sp|O94533|ELP2_SCHPO Elongator complex protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp2 PE=3 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 138/274 (50%), Gaps = 18/274 (6%)

Query: 27  VPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86
           V      PP E+ L    L+PE  KL+GHG E+++    + G + A+SCK+Q+   A I 
Sbjct: 502 VIGSLNHPPFEEHLQRLLLFPEVEKLFGHGYEVYACAISNNGNIAATSCKSQTPEHAVIR 561

Query: 87  LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146
           L+E  SW     L+ HSLTVT I+FS DD  +LS  RDR   +  +       +DY   A
Sbjct: 562 LYETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDR---LVCLHEQAENLLDYNNFA 618

Query: 147 RQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
             +AH RIIW  SW P   G+ FAT SRDK VK W + +   +  + AL  F+ +VTA+ 
Sbjct: 619 SIKAHSRIIWDASWAPKEMGYFFATASRDKFVKFWKINDNKKICDVAAL-QFSDAVTAVD 677

Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN 264
           +       +   LAVG E+G I +W        +++   P+      R       + ++N
Sbjct: 678 FAPF-FHNDELLLAVGTEAGKIFIWRCP---RENLTKWYPT------RLPDHMAPMESIN 727

Query: 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           ++ WK   +     ++ +A  G D +VR+  V +
Sbjct: 728 QILWKPTFETMGLYSLLIA--GEDTSVRLLNVTL 759

Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. Independently, elp2 may be involved in polarized exocytosis. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P42935|ELP2_YEAST Elongator complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP2 PE=1 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 15/221 (6%)

Query: 34  PPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW 93
           PP+EDQL  H LWPE  KLYGHG E+  L      KL+AS+C++ +   A I ++   +W
Sbjct: 536 PPMEDQLQRHLLWPEVEKLYGHGFEITCLDISPDQKLIASACRSNNVQNAVIRIFSTENW 595

Query: 94  KAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI-QRTGTGEIDYQLIARQEAH 151
             +   L  HSLT+T+++FS D   LLSV RDR+++++       T E+ ++    ++ H
Sbjct: 596 LEIKPALPFHSLTITRLKFSKDGKFLLSVCRDRKWALWERNMEDNTFELRFK---NEKPH 652

Query: 152 KRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQIL-ALPPFNSSVTALSWVGL 208
            RIIW   W P  FG+ F T SRDKTVK+W  + + +   +L A      +VTA+S +  
Sbjct: 653 TRIIWDADWAPLEFGNVFVTASRDKTVKVWRHQKEPADDYVLEASIKHTKAVTAIS-IHD 711

Query: 209 DRQKNHGFLAVGMESGVIELWSIS------VNRTNDVSTPA 243
              +    ++VG+E+G I L+S +      + + N+  TPA
Sbjct: 712 SMIREKILISVGLENGEIYLYSYTLGKFELITQLNEDITPA 752

Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. It functions as a gamma-toxin target (TOT); disruption of the complex confers resistance to Kluyveromyces lactis toxin zymocin (pGKL1 killer toxin). May also be involved in sensitiviy to Pichia inositovora toxin. May be involved in tRNA modification. ELP2 is dispensable for the complex integrity and, in vitro, is not required for complex HAT activity. It is not required for the association of the complex with nascent RNA transcript. Independently, ELP2 may be involved in polarized exocytosis. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
255570663	846	nucleotide binding protein, putative [Ri	0.989	0.348	0.743	1e-133
225424087	839	PREDICTED: probable elongator complex pr	0.989	0.351	0.739	1e-129
356575590	832	PREDICTED: elongator complex protein 2-l	0.979	0.350	0.736	1e-127
356536278	839	PREDICTED: elongator complex protein 2-l	0.979	0.348	0.716	1e-123
449526585	837	PREDICTED: elongator complex protein 2-l	0.969	0.345	0.699	1e-121
449435208	837	PREDICTED: elongator complex protein 2-l	0.969	0.345	0.699	1e-121
297737769	801	unnamed protein product [Vitis vinifera]	0.865	0.322	0.688	1e-114
297852630	839	nucleotide binding protein [Arabidopsis	0.973	0.345	0.656	1e-113
110741639	838	hypothetical protein [Arabidopsis thalia	0.966	0.343	0.662	1e-112
334183179	840	elongator protein 2 [Arabidopsis thalian	0.966	0.342	0.658	1e-111

>gi|255570663|ref|XP_002526286.1| nucleotide binding protein, putative [Ricinus communis] gi|223534367|gb|EEF36075.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 220/296 (74%), Positives = 256/296 (86%), Gaps = 1/296 (0%)

Query: 4   ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 63
           + RET +R+GNDGLDTLESVPDAVP VF EPPIEDQLA+HTLWPESHKLYGHGNELFSLC
Sbjct: 550 SVRETTDRNGNDGLDTLESVPDAVPVVFIEPPIEDQLAYHTLWPESHKLYGHGNELFSLC 609

Query: 64  CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123
           CD +GKLVASSCKAQ+ A AEIWLW+VGSWKA+G LQSHSLTVTQ+ FSHDD++LL+VSR
Sbjct: 610 CDREGKLVASSCKAQTAAVAEIWLWQVGSWKAVGSLQSHSLTVTQMEFSHDDSMLLTVSR 669

Query: 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           DRQFSVF I+RTG  EI Y+L+ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA+EN
Sbjct: 670 DRQFSVFTIKRTGNDEISYELLARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAIEN 729

Query: 184 KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243
           +S VKQ++ LP FNSSVTALSWVG+DRQ+NHG LA+GME+G+IELWS++V R+ D S   
Sbjct: 730 ESCVKQMMTLPQFNSSVTALSWVGVDRQRNHGLLAIGMENGLIELWSLTVKRSEDGSIAV 789

Query: 244 PST-ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           P   A + IR DP  CHV+ VNRM+W+ HEK ++ + M LASCGAD  VR+F+V V
Sbjct: 790 PGVAATLTIRLDPSMCHVSTVNRMSWRNHEKSEDCKNMLLASCGADQCVRLFEVIV 845

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424087|ref|XP_002282940.1| PREDICTED: probable elongator complex protein 2-like [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/296 (73%), Positives = 252/296 (85%), Gaps = 1/296 (0%)

Query: 4   ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 63
           +T E+ ER+ NDGLDTLE++PDAVP V TEPPIE++LAWHTLWPESHKLYGHGNELFSLC
Sbjct: 543 STHESPERNVNDGLDTLETIPDAVPVVLTEPPIEEKLAWHTLWPESHKLYGHGNELFSLC 602

Query: 64  CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123
           CD  GKLVASSCKAQS   AEIWLW+VGSWKA+GRLQSHSLTVTQI FSHDDNLLLSVSR
Sbjct: 603 CDQGGKLVASSCKAQSAKVAEIWLWQVGSWKAVGRLQSHSLTVTQIEFSHDDNLLLSVSR 662

Query: 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           DRQFSVFAI+RTG  E+ +QLIARQEAHKRIIW+CSWNPFGHEFATGSRDKTVKIWAV+ 
Sbjct: 663 DRQFSVFAIKRTGVDEVSHQLIARQEAHKRIIWACSWNPFGHEFATGSRDKTVKIWAVDK 722

Query: 184 KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243
            SSVKQ++ LP F SSVTALSW  LD Q+N GFLAVGMESG++ELWS+SV RT D S   
Sbjct: 723 GSSVKQLMTLPQFTSSVTALSWFALDHQRNDGFLAVGMESGLVELWSLSVTRTVDGSMTV 782

Query: 244 PS-TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           P  TA ++ R DPF CHV++V R+AW+  E   + +++ LASCGAD+ VR+F+VNV
Sbjct: 783 PGVTAALVRRLDPFMCHVSSVQRLAWRKSEASGDCKSVLLASCGADHCVRIFEVNV 838

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575590|ref|XP_003555922.1| PREDICTED: elongator complex protein 2-like [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/296 (73%), Positives = 250/296 (84%), Gaps = 4/296 (1%)

Query: 4   ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 63
           A  E  +R G DGLDT+E++PDAVP VFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC
Sbjct: 539 AVHEAPKRSGIDGLDTIETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 598

Query: 64  CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123
           CDH+G+LVASSCKAQS A AE+WLW+VGSWKA+GRLQSHSLTVTQ+ FSHDDN LL+VSR
Sbjct: 599 CDHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSR 658

Query: 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           DRQFSVF+I RTGTGEI Y L+ RQE HKRIIWSCSWNP GHEFATGSRDKTVKIWA+E 
Sbjct: 659 DRQFSVFSITRTGTGEISYSLLVRQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAIE- 717

Query: 184 KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243
           + SVKQ+++LP F SSVTALSWVGL  +KN+G LAVGME+G IELW++S NR +D S  A
Sbjct: 718 RESVKQLMSLPQFTSSVTALSWVGLHHRKNNGLLAVGMENGQIELWNLSYNRADDGSIAA 777

Query: 244 PS-TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           P   A++ +R DPF CH + VNR+AWK +E  + S  MQLASCGADN VRVF V+V
Sbjct: 778 PGLAASLAVRIDPFICHASTVNRLAWKKNEDDQTS--MQLASCGADNCVRVFDVSV 831

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536278|ref|XP_003536666.1| PREDICTED: elongator complex protein 2-like [Glycine max]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 247/296 (83%), Gaps = 4/296 (1%)

Query: 4   ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 63
           A  E  ER G +GLDTLE++PDAVP VFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC
Sbjct: 546 AVHEAPERSGVNGLDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 605

Query: 64  CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123
           CDH+G+LVASSCKAQS A AE+WLW+VGSWKA+G LQSHSLTVTQ+ FSHDDN LL+VSR
Sbjct: 606 CDHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGHLQSHSLTVTQMEFSHDDNFLLTVSR 665

Query: 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           DRQFSVF+I RTGTGEI   L+ARQE HKRIIWSCSWNP G EFATGSRDKTVKIWA+E 
Sbjct: 666 DRQFSVFSITRTGTGEISCSLLARQEGHKRIIWSCSWNPHGQEFATGSRDKTVKIWAIE- 724

Query: 184 KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243
           + S++Q+++LP F SSVTALSWVGL  ++N+G LAVGME+G IELW++S NR +D S  A
Sbjct: 725 RDSIRQLMSLPQFTSSVTALSWVGLHHRRNNGLLAVGMENGQIELWNLSYNRADDGSIAA 784

Query: 244 PSTA-NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
           P  A ++ +R DPF CH + +NR+AWK +E   +  +MQLASCGADN VRVF V V
Sbjct: 785 PGLATSLAVRIDPFICHASTINRLAWKKNE--DDHMSMQLASCGADNCVRVFDVTV 838

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526585|ref|XP_004170294.1| PREDICTED: elongator complex protein 2-like [Cucumis sativus]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/293 (69%), Positives = 251/293 (85%), Gaps = 4/293 (1%)

Query: 7   ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDH 66
           +T +R GN+G+DTLE++PDAVP + TEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCD+
Sbjct: 546 KTPDRSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDN 605

Query: 67  QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126
           +GKLVASSCKAQ+ + AEIWLWEVGSWKA+GRLQSHSLT+TQ+ FS+DD++LL+VSRDRQ
Sbjct: 606 KGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQ 665

Query: 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186
           FSVF I RTG+ EI ++LI+RQEAH+RIIWSCSWNP GHEFATGSRDKTVKIWAV  +SS
Sbjct: 666 FSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTPESS 725

Query: 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246
           VKQ+  L  F SSVTALSWVGLD + N GFLA+GME+G++ELW++S+ RT+++ +     
Sbjct: 726 VKQLTTLSQFKSSVTALSWVGLDSKSN-GFLAIGMENGLLELWNLSIKRTDNIYSNV--V 782

Query: 247 ANIIIRFDPFACHVAAVNRMAWKTHEKP-KNSRTMQLASCGADNTVRVFQVNV 298
           A++ IR DPF CHV++VNR+AWK  EK  +  R +Q ASCG D+ VRVF+VNV
Sbjct: 783 ASVAIRLDPFVCHVSSVNRLAWKKPEKSGEECRKLQFASCGTDHCVRVFEVNV 835

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435208|ref|XP_004135387.1| PREDICTED: elongator complex protein 2-like [Cucumis sativus]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/293 (69%), Positives = 251/293 (85%), Gaps = 4/293 (1%)

Query: 7   ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDH 66
           +T +R GN+G+DTLE++PDAVP + TEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCD+
Sbjct: 546 KTPDRSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDN 605

Query: 67  QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126
           +GKLVASSCKAQ+ + AEIWLWEVGSWKA+GRLQSHSLT+TQ+ FS+DD++LL+VSRDRQ
Sbjct: 606 KGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQ 665

Query: 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186
           FSVF I RTG+ EI ++LI+RQEAH+RIIWSCSWNP GHEFATGSRDKTVKIWAV  +SS
Sbjct: 666 FSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTPESS 725

Query: 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246
           VKQ+  L  F SSVTALSWVGLD + N GFLA+GME+G++ELW++S+ RT+++ +     
Sbjct: 726 VKQLTTLSQFKSSVTALSWVGLDSKSN-GFLAIGMENGLLELWNLSIKRTDNIYSNV--V 782

Query: 247 ANIIIRFDPFACHVAAVNRMAWKTHEKP-KNSRTMQLASCGADNTVRVFQVNV 298
           A++ IR DPF CHV++VNR+AWK  EK  +  R +Q ASCG D+ VRVF+VNV
Sbjct: 783 ASVAIRLDPFVCHVSSVNRLAWKKPEKSGEECRKLQFASCGTDHCVRVFEVNV 835

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737769|emb|CBI26970.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/295 (68%), Positives = 230/295 (77%), Gaps = 37/295 (12%)

Query: 4   ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLC 63
           +T E+ ER+ NDGLDTLE++PDAVP V TEPPIE++LAWHTLWPESHKLYGHGNELFSLC
Sbjct: 543 STHESPERNVNDGLDTLETIPDAVPVVLTEPPIEEKLAWHTLWPESHKLYGHGNELFSLC 602

Query: 64  CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123
           CD  GKLVASSCKAQS   AEIWLW+VGSWKA+GRLQSHSLTVTQI FSHDDNLLLSVSR
Sbjct: 603 CDQGGKLVASSCKAQSAKVAEIWLWQVGSWKAVGRLQSHSLTVTQIEFSHDDNLLLSVSR 662

Query: 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           DRQFSVFAI+RTG  E+ +QLIARQEAHKRIIW+CSWNPFGHEFATGSRDKTVKIWAV+ 
Sbjct: 663 DRQFSVFAIKRTGVDEVSHQLIARQEAHKRIIWACSWNPFGHEFATGSRDKTVKIWAVDK 722

Query: 184 KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243
            SSVKQ++ LP F SSVTALSW  LD Q+N GFLAVGMESG++ELWS+SV RT D     
Sbjct: 723 GSSVKQLMTLPQFTSSVTALSWFALDHQRNDGFLAVGMESGLVELWSLSVTRTVD----- 777

Query: 244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
                                           + +++ LASCGAD+ VR+F+VNV
Sbjct: 778 --------------------------------DCKSVLLASCGADHCVRIFEVNV 800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852630|ref|XP_002894196.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297340038|gb|EFH70455.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/294 (65%), Positives = 238/294 (80%), Gaps = 4/294 (1%)

Query: 2   YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFS 61
           ++++   V   G +GLDT E+VP+A PA   EPPIEDQLA+HTLWPESHKLYGHGNELFS
Sbjct: 545 HSSSEPLVRNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFS 604

Query: 62  LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV 121
           LCCDH+GKLVASSCKAQS + AEIWLWEVG+WKA+GRLQSHSLTVT + FS+DD LLLSV
Sbjct: 605 LCCDHKGKLVASSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSV 664

Query: 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181
           SRDR FSVF+IQRT  G++ ++L+A+ EAHKRIIW+CSWNPFGH+FAT SRDKTVKIW++
Sbjct: 665 SRDRHFSVFSIQRTDNGDVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSI 724

Query: 182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241
           EN + +KQILALP F SSVTA++W GLD ++  G +AVGMESG+IELW+I +    + +T
Sbjct: 725 ENDARIKQILALPQFGSSVTAVAWTGLDHKEKSGCVAVGMESGLIELWNIKIIEKEEGTT 784

Query: 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEK-PKNSRTMQLASCGADNTVRVF 294
              +TA + +R +PF CHV+AVNR+AW+  EK   N R + L SCG DN VRVF
Sbjct: 785 ---ATAALALRLEPFMCHVSAVNRLAWRPTEKCESNQRLLTLTSCGDDNCVRVF 835

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741639|dbj|BAE98766.1| hypothetical protein [Arabidopsis thaliana]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/293 (66%), Positives = 242/293 (82%), Gaps = 5/293 (1%)

Query: 4   ATRETVERHGN-DGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSL 62
           ++ E +ER+G  +GLDT E+VP+A PA   EPPIEDQLA+HTLWPESHKLYGHGNELFSL
Sbjct: 545 SSSEPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSL 604

Query: 63  CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122
           C DH+G LVASSCKAQS + AEIWLWEVG+WKA+GRLQSHSLTVT + FS+DD LLLSVS
Sbjct: 605 CSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVS 664

Query: 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182
           RDR FSVF+IQRT  GE+ ++L+A+ EAHKRIIW+CSWNPFGH+FAT SRDKTVKIW+VE
Sbjct: 665 RDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVE 724

Query: 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242
           N + +KQIL LPPF SSVTA++W GLDR +  G +AVGMESG+IEL ++ +  T + +T 
Sbjct: 725 NDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEGTT- 783

Query: 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ-LASCGADNTVRVF 294
             +TA + +R +PF CHV+AVNR+AW+  EK ++++++Q L SCG DN VRVF
Sbjct: 784 --ATAALALRLEPFMCHVSAVNRLAWRPTEKCESNQSLQWLTSCGDDNCVRVF 834

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183179|ref|NP_001185180.1| elongator protein 2 [Arabidopsis thaliana] gi|332194320|gb|AEE32441.1| elongator protein 2 [Arabidopsis thaliana]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/293 (65%), Positives = 242/293 (82%), Gaps = 5/293 (1%)

Query: 4   ATRETVERHGN-DGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSL 62
           ++ E +ER+G  +GLDT E+VP+A PA   EPPIEDQLA+HTLWPESHKLYGHGNELFSL
Sbjct: 547 SSSEPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSL 606

Query: 63  CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122
           C DH+G LVASSCKAQS + AEIWLWEVG+WKA+GRLQSHSLTVT + FS+DD LLLSVS
Sbjct: 607 CSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVS 666

Query: 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182
           RDR FSVF+IQRT  GE+ ++L+A+ EAHKRIIW+CSWNPFGH+FAT SRDKTVKIW+VE
Sbjct: 667 RDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVE 726

Query: 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242
           N + +KQIL LPPF SSVTA++W GLDR +  G +AVGMESG+IEL ++ +  T + +T 
Sbjct: 727 NDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEGTT- 785

Query: 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ-LASCGADNTVRVF 294
             +TA + +R +PF CHV+AVNR+AW+  EK +++++++ L SCG DN VRVF
Sbjct: 786 --ATAALALRLEPFMCHVSAVNRLAWRPTEKCESNQSLRWLTSCGDDNCVRVF 836

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
DICTYBASE|DDB_G0275651	901	elp2 "elongation protein 2" [D	0.949	0.314	0.364	2.4e-47
RGD|1306419	821	Elp2 "elongator acetyltransfer	0.885	0.321	0.390	1.4e-44
UNIPROTKB|F1NMC6	822	ELP2 "Uncharacterized protein"	0.885	0.321	0.384	2.9e-43
UNIPROTKB|I3L616	826	ELP2 "Uncharacterized protein"	0.892	0.322	0.381	4.9e-43
UNIPROTKB|E1BEP7	827	ELP2 "Uncharacterized protein"	0.892	0.321	0.385	2.2e-42
UNIPROTKB|Q5EBD9	824	elp2 "Elongator complex protei	0.899	0.325	0.370	9.3e-41
UNIPROTKB|Q6IA86	826	ELP2 "Elongator complex protei	0.892	0.322	0.364	5.4e-40
MGI|MGI:1889642	831	Elp2 "elongator acetyltransfer	0.791	0.283	0.402	9e-40
FB|FBgn0033540	794	Elp2 "Elongator complex protei	0.865	0.324	0.363	5.1e-37
POMBASE|SPCC895.06	760	elp2 "elongator complex subuni	0.919	0.360	0.326	1.3e-33

DICTYBASE|DDB_G0275651 elp2 "elongation protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 503 (182.1 bits), Expect = 2.4e-47, P = 2.4e-47
 Identities = 108/296 (36%), Positives = 157/296 (53%)

Query:    10 ERHGNDGLDT--LESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQ 67
             E  G +G+DT   E      P V +EPP E+ L   +LWPE HK YGHGNE+ ++ C   
Sbjct:   607 EGGGGEGMDTGYFEDEIPFNPEVLSEPPFEEHLLQSSLWPEIHKFYGHGNEIVAVACSAD 666

Query:    68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
             G  +AS+C+A S   A + +W V +WK    L+ H+LTV  + FSH+   LL VSRDR +
Sbjct:   667 GMYLASTCRASSADQATVRIWNVSNWKECANLKGHTLTVVNLSFSHNSKYLLGVSRDRMW 726

Query:   128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
             +++    + + E   ++I+  ++H RIIWS SW+     FATG+RDK VK+W ++N   +
Sbjct:   727 TLWERSASNSEEPFVKVISAPKSHGRIIWSGSWSHDDKFFATGARDKLVKVWNLDNIKDI 786

Query:   188 KQILA--LPPFNSSVTALSWVGLDRQ--KNHG--FLAVGMESGVIELWSISVNRTNDVST 241
             K   A  LP F S VT + +     +    HG   LAVG + G I +W      T   S 
Sbjct:   787 KNACASTLPAFGSGVTCVEFAPKSSKFTGEHGDHLLAVGEDDGKITIWK----STTSTSN 842

Query:   242 PAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSRTMQLASCGADNTVRVFQV 296
             P       +    P   H   V R+ W+ T     NS T Q+ +C  D++VR+F +
Sbjct:   843 PKSLDWTCVHTISPLISHTLDVRRIRWRDTPTINGNSLTYQIVTCSVDHSVRIFNI 898

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1306419 Elp2 "elongator acetyltransferase complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 476 (172.6 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 112/287 (39%), Positives = 154/287 (53%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             PAV +EPP ED L  +TLWPE  KLYGHG E+F + C++   L+AS+CKA     A I L
Sbjct:   537 PAVLSEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNNSKTLLASACKAAQKEHAAIIL 596

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
             W   SWK +  L  H+LTVTQ+ FS DD  LL+VSRDR +S++  Q   + E D  + L 
Sbjct:   597 WSTTSWKQVQSLAYHTLTVTQMAFSPDDKFLLAVSRDRTWSLWKRQDVTSAEFDPFFSLF 656

Query:   146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS------SVKQILALPP 195
             A        H RIIWSC W+P    F TGSRDK V +W   N S       +    ++  
Sbjct:   657 AFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECNSSYNPMEHPINPCSSILD 716

Query:   196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255
               S VTA+S   +        +AVG+ESG I ++S S  +TN  +    S     +   P
Sbjct:   717 VGSCVTAVSVCPVLNPAQRYIVAVGLESGKICIYSWS--KTNQETKDWTSC----VETTP 770

Query:   256 FACHVAAVNRMAWK-----THEKPKNSRTMQLASCGADNTVRVFQVN 297
                H   + R+ WK     T +  + +  +  ASCG D+TV++++VN
Sbjct:   771 SQSHTLGIRRLCWKSCSGSTEQSEEGTEWLDFASCGEDHTVKIYRVN 817

GO:0000502 "proteasome complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0033588 "Elongator holoenzyme complex" evidence=ISO;ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA;ISO

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0003677 "DNA binding" evidence=ISO

UNIPROTKB|F1NMC6 ELP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 464 (168.4 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 112/291 (38%), Positives = 151/291 (51%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             P + TEPP ED L  +TLWPE  KLYGHG E+F + C++   ++AS+CKA     A I L
Sbjct:   534 PLILTEPPQEDHLLQNTLWPEVQKLYGHGYEIFCVACNNSNTVIASACKASKKEHAAIIL 593

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
             W   SWK +  L  H+LTVTQ+ FS +D LLL+VSRDR +S++  + +      +   A 
Sbjct:   594 WSTSSWKKIQSLPFHNLTVTQLAFSPNDKLLLAVSRDRNWSLWREEDSSESGPVFSCCAY 653

Query:   148 QE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWA-----VENKS----SVKQILALP 194
              +     H RIIWSC W P    F TGSRDK V IW      V  +     S+K    + 
Sbjct:   654 TDKNTAVHSRIIWSCDWTPDSKYFVTGSRDKKVIIWGQCDLPVTTEGIVLDSIKPCSTVL 713

Query:   195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII--IR 252
                 SVTA+S   +        +A+G+E+G I  +      T   S   PS A+    + 
Sbjct:   714 DAGDSVTAVSISRVLTPDGRYVVAIGLENGKINFY------TWKQSGQEPSVADWTKCVE 767

Query:   253 FDPFACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQVN 297
              D    H  AV R+ W+       H    NS  +QLASCGAD+ V++F VN
Sbjct:   768 MDNSQSHALAVKRLCWRHREGRAGHNDENNSEWLQLASCGADHCVKIFNVN 818

GO:0005737 "cytoplasm" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

UNIPROTKB|I3L616 ELP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 462 (167.7 bits), Expect = 4.9e-43, P = 4.9e-43
 Identities = 110/288 (38%), Positives = 154/288 (53%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             P++ TEPP ED L  +TLWPE  KLYGHG E+F + C++   L+AS+CKA     A I L
Sbjct:   539 PSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVACNNSKTLLASACKAAKKEHAAIIL 598

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
             W   SWK +  L  HSLTVTQ+ FS DD  LL+VSRDR +S++  Q T   E+D  + L 
Sbjct:   599 WNTTSWKQVQNLVFHSLTVTQMAFSPDDKFLLAVSRDRTWSLWKRQDTIPPELDPVFSLF 658

Query:   146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV--ENKSSVKQIL----ALPP 195
             A        H RIIWSC W+P G  F TGSRDK V  W        S++  +    ++  
Sbjct:   659 AFTNKVTAVHSRIIWSCDWSPDGKYFFTGSRDKKVVAWGECDSGDDSIEHSIGPCSSVLD 718

Query:   196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255
                +VTA+S   +        +AVG+E G I L+S    +TN V  P  +     ++   
Sbjct:   719 VGGAVTAVSVCPVLNLSQRYIVAVGLECGKISLYSWK--KTNQV--PEINDWIHCVKTSQ 774

Query:   256 FACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQVN 297
                H  A+ ++ WK         + + +  +  ASCG D+TV++ +VN
Sbjct:   775 SQSHTLAIKKLCWKNCNGKTEQNEAEGTEWLHFASCGEDHTVKIHRVN 822

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BEP7 ELP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 456 (165.6 bits), Expect = 2.2e-42, P = 2.2e-42
 Identities = 111/288 (38%), Positives = 155/288 (53%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             P++ TEPP ED L  +TLWPE  KLYGHG E+F + C +   L+AS+CKA     A I L
Sbjct:   540 PSLLTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVACSNSKTLLASACKAAKKEHAAIIL 599

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
             W   SWK +  L  HSLTVTQ+ FS DD  LL+VSRDR +S++  Q T   E+D  + L 
Sbjct:   600 WNTASWKQVQNLIFHSLTVTQMAFSPDDKFLLAVSRDRTWSLWKRQDTIPPELDPVFSLF 659

Query:   146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS--- 198
             A        H RIIWSC W+P G  F TGSRD+ V +W   + S      ++ P +S   
Sbjct:   660 AFTNKVTAVHSRIIWSCDWSPDGKYFFTGSRDRKVVVWGECDSSDDAVEHSIGPCSSVLD 719

Query:   199 ---SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255
                +VTA+S   +        +AVG+E G I L+S    +T+ V  P  +     +    
Sbjct:   720 VGGAVTAVSVCPVLNLSQRYVVAVGLECGKICLYSWE--KTDQV--PEINDWIRCVETSQ 775

Query:   256 FACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQVN 297
                H  A+ ++ WK         + + +  +Q ASCG D+TV++ +VN
Sbjct:   776 SQSHTLAIKKLCWKNCNGKTEQNEGEGAEWLQFASCGEDHTVKIHRVN 823

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5EBD9 elp2 "Elongator complex protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 441 (160.3 bits), Expect = 9.3e-41, P = 9.3e-41
 Identities = 110/297 (37%), Positives = 154/297 (51%)

Query:    22 SVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA 81
             S P+  P   TEPP ED L  +TLWPE  KLYGHG E+F++ C+    ++AS+CKA    
Sbjct:   530 SQPNFQPLNLTEPPTEDHLLQNTLWPEVQKLYGHGYEIFAVACNSAKTVIASACKASKRE 589

Query:    82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR--TGTGE 139
              A I LW   SWK +  L  H+LTVTQ+ FS DD  LL VSRDR +S++  Q       E
Sbjct:   590 HAAIILWSTTSWKQLQSLSYHNLTVTQMAFSPDDEFLLVVSRDRNWSLWKKQEGIPEQTE 649

Query:   140 IDYQLIARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV-------ENKSS-- 186
               + L A  +     H RIIW+C W P    F TGSRDK V +W         E KSS  
Sbjct:   650 PTFTLYASTDKNSCVHSRIIWACDWTPDSKYFVTGSRDKKVIVWGDCSLPSMNEEKSSAL 709

Query:   187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT-NDVSTPAPS 245
             ++   +L     S+TA+S   +        +AVG++ G+I+L+    + T ND       
Sbjct:   710 IRPCSSLLDTGDSITAVSVSQVLALDGSYIIAVGLDCGIIQLYKWKHSGTVNDWLKCLAM 769

Query:   246 TANIIIRFDPFACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQV 296
               +++        H   V ++ W++      H+   N   +QLASCGAD+ V++F V
Sbjct:   770 DQSLL-------SHTLTVKQLCWRSCLGRAGHDDRDNGDWIQLASCGADHCVKIFDV 819

GO:0000502 "proteasome complex" evidence=ISS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

UNIPROTKB|Q6IA86 ELP2 "Elongator complex protein 2" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 5.4e-40, P = 5.4e-40
 Identities = 105/288 (36%), Positives = 156/288 (54%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             P++ TEPP ED L  +TLWPE  KLYGHG E+F + C+    L+AS+CKA     A I L
Sbjct:   539 PSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIIL 598

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
             W   SWK +  L  HSLTVTQ+ FS ++  LL+VSRDR +S++  Q T + E +  + L 
Sbjct:   599 WNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVFSLF 658

Query:   146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIW----AVEN--KSSVKQILALPP 195
             A        H RIIWSC W+P    F TGSRDK V +W    + ++  + ++    ++  
Sbjct:   659 AFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLD 718

Query:   196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255
                +VTA+S   +        +AVG+E G I L++    +T+ V  P  +     +    
Sbjct:   719 VGGAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTWK--KTDQV--PEINDWTHCVETSQ 774

Query:   256 FACHVAAVNRMAWK-----THEKP-KNSRTMQLASCGADNTVRVFQVN 297
                H  A+ ++ WK     T +K  + +  +  ASCG D+TV++ +VN
Sbjct:   775 SQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHTVKIHRVN 822

GO:0033588 "Elongator holoenzyme complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IC

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IC

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IC

MGI|MGI:1889642 Elp2 "elongator acetyltransferase complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 432 (157.1 bits), Expect = 9.0e-40, P = 9.0e-40
 Identities = 103/256 (40%), Positives = 138/256 (53%)

Query:    28 PAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87
             PAV  EPP ED L  +TLWPE  KLYGHG E+  + C++   L+AS+CKA     A I L
Sbjct:   539 PAVLNEPPTEDHLLQNTLWPEIQKLYGHGYEIVCVACNNSKTLLASACKASQKEHAAIIL 598

Query:    88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID--YQLI 145
             W   SWK +  L  H+LTVTQ+ FS DD  LL+VSRDR +S++  Q   + E D  + L 
Sbjct:   599 WSTASWKQVQSLAFHTLTVTQMTFSPDDKFLLAVSRDRTWSLWKRQDATSSEFDPFFSLF 658

Query:   146 ARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-------VKQILALP 194
             A        H RIIWSC W+P    F TGSRDK V +W  E KSS       ++   ++ 
Sbjct:   659 AFTNKITSVHSRIIWSCDWSPDNKYFFTGSRDKKVVVWG-ECKSSHNPMEHPIRPCSSIL 717

Query:   195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD 254
                SSVTA+S   +        +A+G+ESG I ++S   N+TN       S     +  +
Sbjct:   718 DVGSSVTAVSVCPVLNPAQRYIVAIGLESGKICIYSW--NKTNQEINDWTSC----VETN 771

Query:   255 PFACHVAAVNRMAWKT 270
             P   H   + R+ WK+
Sbjct:   772 PSQSHSLGIRRLCWKS 787

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IDA

GO:0033588 "Elongator holoenzyme complex" evidence=ISO

GO:0046425 "regulation of JAK-STAT cascade" evidence=IDA

FB|FBgn0033540 Elp2 "Elongator complex protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 5.1e-37, P = 5.1e-37
 Identities = 106/292 (36%), Positives = 153/292 (52%)

Query:    21 ESVPDA--VPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQ 78
             +  PD   VP     PP E+ L  +TLWPE  KLYGHG E+F+L     G L+AS+CKA 
Sbjct:   522 DEYPDNYFVPIALETPPQEETLMQNTLWPELQKLYGHGYEIFALAATADGSLLASTCKAS 581

Query:    79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138
             +   A+I LW   +WK + +L  H LTVTQ+ FS D   LLSVSRDR++ ++  Q +   
Sbjct:   582 NAEHAQIILWNPSNWKQIQKLSGHQLTVTQLSFSPDSRYLLSVSRDRRWCLYERQDSS-- 639

Query:   139 EIDYQLIARQE----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN---KSSVKQIL 191
              + YQL+A  +     H RIIWSC W+  G  F T SRD  V +W  E    +SS+    
Sbjct:   640 -VSYQLVASTDKSNGVHTRIIWSCDWSHDGQFFVTSSRDGKVVVWKKEEDCKESSLNGWQ 698

Query:   192 A---LPPFNSSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246
             A   L   N S+TA+++    L    +   LA+G E+G+I+++         +S    S 
Sbjct:   699 ANGVLELKNESITAVAFSNSYLSGTDDTYILALGTETGLIKIYQFVRGAWKLLSDLNKSQ 758

Query:   247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
             A           H   V R+ ++    P   + +QLASCG D+ VR++ + +
Sbjct:   759 A-----------HHLTVRRLQFR----P--GKQLQLASCGEDHLVRIYDIKL 793

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

POMBASE|SPCC895.06 elp2 "elongator complex subunit Elp2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 374 (136.7 bits), Expect = 1.3e-33, P = 1.3e-33
 Identities = 96/294 (32%), Positives = 149/294 (50%)

Query:     8 TVERHGNDGLDTLES-VPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDH 66
             T    G    + +++ V D + ++   PP E+ L    L+PE  KL+GHG E+++    +
Sbjct:   483 TASETGTVNAEEVQTPVADVIGSL-NHPPFEEHLQRLLLFPEVEKLFGHGYEVYACAISN 541

Query:    67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126
              G + A+SCK+Q+   A I L+E  SW     L+ HSLTVT I+FS DD  +LS  RDR 
Sbjct:   542 NGNIAATSCKSQTPEHAVIRLYETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDR- 600

Query:   127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENK 184
               +  +       +DY   A  +AH RIIW  SW P   G+ FAT SRDK VK W + + 
Sbjct:   601 --LVCLHEQAENLLDYNNFASIKAHSRIIWDASWAPKEMGYFFATASRDKFVKFWKINDN 658

Query:   185 SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP 244
               +  + AL  F+ +VTA+ +       +   LAVG E+G I +W     R N ++   P
Sbjct:   659 KKICDVAALQ-FSDAVTAVDFAPFFHN-DELLLAVGTEAGKIFIWRCP--REN-LTKWYP 713

Query:   245 STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298
             +      R       + ++N++ WK   +     ++ +A  G D +VR+  V +
Sbjct:   714 T------RLPDHMAPMESINQILWKPTFETMGLYSLLIA--GEDTSVRLLNVTL 759

GO:0002098 "tRNA wobble uridine modification" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0033588 "Elongator holoenzyme complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 92.4 bits (230), Expect = 8e-22
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 43/248 (17%)

Query: 48  ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT 107
               L GH + + S+     G+++ SS     T    I +W+V + K +  L+ H+  V 
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRIL-SSSSRDKT----IKVWDVETGKCLTTLRGHTDWVN 139

Query: 108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF 167
            + FS D   + S S+D    ++ + RTG      + +A    H   + S +++P G + 
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDL-RTG------KCVATLTGHTGEVNSVAFSPDGEKL 192

Query: 168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227
            + S D T+K+W +     +     L    + V ++++       +   LA G E G I 
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGT---LRGHENGVNSVAFSP-----DGYLLASGSEDGTIR 244

Query: 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287
           +W        D+ T               + H  +V  +AW       +    +LAS  A
Sbjct: 245 VW--------DLRTGECVQT--------LSGHTNSVTSLAW-------SPDGKRLASGSA 281

Query: 288 DNTVRVFQ 295
           D T+R++ 
Sbjct: 282 DGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 7e-20
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 43/247 (17%)

Query: 48  ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT 107
               L GH   +  +     GKL+A+      T      +W++ + + +  L+ H+  V 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGS-GDGTIK----VWDLETGELLRTLKGHTGPVR 55

Query: 108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF 167
            +  S D   L S S D+   ++ ++   TGE     +     H   + S +++P G   
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLE---TGE----CVRTLTGHTSYVSSVAFSPDGRIL 108

Query: 168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227
           ++ SRDKT+K+W VE     K +  L      V ++++       +  F+A   + G I+
Sbjct: 109 SSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAF-----SPDGTFVASSSQDGTIK 160

Query: 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287
           LW +   +                       H   VN +A+     P   +   L S  +
Sbjct: 161 LWDLRTGKCVAT----------------LTGHTGEVNSVAF----SPDGEK---LLSSSS 197

Query: 288 DNTVRVF 294
           D T++++
Sbjct: 198 DGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 43/247 (17%)

Query: 50  HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
             L GH   +  +     G  +AS    ++     I LW++ + + +  L  H+  V+ +
Sbjct: 45  RTLKGHTGPVRDVAASADGTYLASGSSDKT-----IRLWDLETGECVRTLTGHTSYVSSV 99

Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169
            FS D  +L S SRD+   V+ +          + +     H   + S +++P G   A+
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDV-------ETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 170 GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
            S+D T+K+W +     V  +         V ++++       +   L      G I+LW
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSP-----DGEKLLSSSSDGTIKLW 204

Query: 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289
            +S  +                       H   VN +A+       +     LAS   D 
Sbjct: 205 DLSTGKC----------------LGTLRGHENGVNSVAF-------SPDGYLLASGSEDG 241

Query: 290 TVRVFQV 296
           T+RV+ +
Sbjct: 242 TIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 39/255 (15%)

Query: 44  TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS 103
           T       L GH   + SL     GKL+AS      T    I LW++ + K +  L  H+
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT----IKLWDLRTGKPLSTLAGHT 198

Query: 104 LTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162
             V+ + FS D   L+ S S D    ++ +    TG++    +     H   + S  ++P
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTL---SGHSDSVVSS-FSP 251

Query: 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222
            G   A+GS D T+++W + + SS+ + L+    +SSV ++++       +   LA G  
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSP-----DGKLLASGSS 304

Query: 223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282
            G + LW +   +     T                 H   V+ +++        S     
Sbjct: 305 DGTVRLWDLETGKLLSSLT--------------LKGHEGPVSSLSFSPDGSLLVS----- 345

Query: 283 ASCGADNTVRVFQVN 297
                D T+R++ + 
Sbjct: 346 -GGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 38/199 (19%)

Query: 99  LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
           L+ H+  VT + FS D  LL + S D    V+ ++         +L+   + H   +   
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-------ELLRTLKGHTGPVRDV 57

Query: 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218
           + +  G   A+GS DKT+++W +E    V+ +       S V+++++       +   L+
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS-----PDGRILS 109

Query: 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278
                  I++W        DV T    T            H   VN +A+       +  
Sbjct: 110 SSSRDKTIKVW--------DVETGKCLTT--------LRGHTDWVNSVAF-------SPD 146

Query: 279 TMQLASCGADNTVRVFQVN 297
              +AS   D T++++ + 
Sbjct: 147 GTFVASSSQDGTIKLWDLR 165

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 35/267 (13%)

Query: 50  HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVTQ 108
             L GH + + SL     G L+ +S  +  T    I LW++ + K     L  HS +V  
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGT----IRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA 168
             FS D +LL S S D    ++ +           L+     H   + S +++P G   A
Sbjct: 248 S-FSPDGSLLASGSSDGTIRLWDL------RSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300

Query: 169 TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228
           +GS D TV++W +E    +   L L      V++LS+           ++ G + G I L
Sbjct: 301 SGSSDGTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS----PDGSLLVSGGSDDGTIRL 355

Query: 229 W------------------SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT 270
           W                  S+S +    V +   +   + +        +  ++    + 
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 271 HEKPKNSRTMQLASCGADNTVRVFQVN 297
                +     LAS  +DNT+R++ + 
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
           +L+   + H   + S +++P G+  A+GS D TV++W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
           +L+   + H   + S +++P G   A+GS D T+K+W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 46  WPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT 105
              S  L GH   + SL     G L+ S      T    I LW++ + K +  L+ HS  
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT----IRLWDLRTGKPLKTLEGHS-N 372

Query: 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH 165
           V  + FS D  ++ S S D    ++ +           L+   + H   + S  ++P G 
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS-------LLRNLDGHTSRVTSLDFSPDGK 425

Query: 166 EFATGSRDKTVKIWAVENKSSVKQ 189
             A+GS D T+++W ++       
Sbjct: 426 SLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 37/216 (17%)

Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169
              +  +LL   S +    + A+       +          H+  I S +++P G    +
Sbjct: 23  PSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLS 82

Query: 170 GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
           GS D T+K+W ++N   + + L     +SSV+ L+        N   LA     G ++LW
Sbjct: 83  GSSDGTIKLWDLDNGEKLIKSLEGLH-DSSVSKLALS--SPDGNSILLASSSLDGTVKLW 139

Query: 230 SISVNRTNDVSTPAPSTANIIIRFDP----------------------------FACHVA 261
            +S       +    S +   + F P                             A H  
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199

Query: 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297
            V+ +A+     P       +AS  +D T+R++ ++
Sbjct: 200 PVSSLAF----SPDGGLL--IASGSSDGTIRLWDLS 229

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.58
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.42
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.33
KOG1334	559	consensus WD40 repeat protein [General function pr	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
KOG2321	703	consensus WD40 repeat protein [General function pr	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
KOG2315	566	consensus Predicted translation initiation factor	99.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.14
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.14
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.13
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
KOG2695	425	consensus WD40 repeat protein [General function pr	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.12
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.85
KOG2314	698	consensus Translation initiation factor 3, subunit	98.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.8
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.76
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.73
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.7
KOG2314	698	consensus Translation initiation factor 3, subunit	98.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.67
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.67
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
PRK04043	419	tolB translocation protein TolB; Provisional	98.64
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.64
KOG3621	726	consensus WD40 repeat-containing protein [General	98.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.16
KOG3621	726	consensus WD40 repeat-containing protein [General	98.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.09
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.08
PRK02888	635	nitrous-oxide reductase; Validated	98.04
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.79
COG3391	381	Uncharacterized conserved protein [Function unknow	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.74
PRK13616	591	lipoprotein LpqB; Provisional	97.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.73
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
KOG2395	644	consensus Protein involved in vacuole import and d	97.64
KOG2444	238	consensus WD40 repeat protein [General function pr	97.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.52
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.51
KOG2395	644	consensus Protein involved in vacuole import and d	97.5
COG3391	381	Uncharacterized conserved protein [Function unknow	97.49
PRK02888	635	nitrous-oxide reductase; Validated	97.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.46
PRK13616	591	lipoprotein LpqB; Provisional	97.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.32
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.32
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.23
PHA02713	557	hypothetical protein; Provisional	97.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.0
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.99
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.95
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.89
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.87
KOG2444	238	consensus WD40 repeat protein [General function pr	96.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.79
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.75
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.67
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.53
PRK10115	686	protease 2; Provisional	96.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.5
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.48
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.44
PHA02713	557	hypothetical protein; Provisional	96.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.42
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.36
PHA03098	534	kelch-like protein; Provisional	96.35
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.29
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.96
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.78
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.62
COG5167	776	VID27 Protein involved in vacuole import and degra	95.61
PHA02790	480	Kelch-like protein; Provisional	95.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.39
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.37
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.19
PHA03098	534	kelch-like protein; Provisional	95.13
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.12
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.94
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.65
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.6
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.58
COG5276	370	Uncharacterized conserved protein [Function unknow	94.57
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.54
COG5167	776	VID27 Protein involved in vacuole import and degra	94.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.39
PRK13684	334	Ycf48-like protein; Provisional	94.23
PRK13684	334	Ycf48-like protein; Provisional	93.96
KOG2247	615	consensus WD40 repeat-containing protein [General	93.92
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.92
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.8
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.71
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.69
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.68
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.65
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.09
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.94
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.82
PHA02790	480	Kelch-like protein; Provisional	92.67
KOG2247	615	consensus WD40 repeat-containing protein [General	92.58
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.53
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.75
COG4590	733	ABC-type uncharacterized transport system, permeas	91.46
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.09
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.94
COG5276	370	Uncharacterized conserved protein [Function unknow	90.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.33
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.89
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.68
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.1
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.05
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.7
PLN02153	341	epithiospecifier protein	87.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.79
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.74
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.26
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.25
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.1
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.24
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	84.86
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	84.8
COG4590	733	ABC-type uncharacterized transport system, permeas	84.47
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.44
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.8
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.73
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.53
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.26
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.39
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	80.73
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	80.33
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	80.12

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.4e-46  Score=284.12  Aligned_cols=252  Identities=21%  Similarity=0.309  Sum_probs=232.3

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCC-ccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPI-EDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      |++..+.++..+.+.+.+|.+|...|.++.|.|-. ...++++      ++|+     ++..|.+|...|..++|+|+|+
T Consensus       195 wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~  274 (459)
T KOG0272|consen  195 WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK  274 (459)
T ss_pred             cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCc
Confidence            89999999999999999999999999999999773 5567776      5774     5778999999999999999999


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      +|+++|.     |.+-++||++++..+....+|...|.+++|.|||.++++|+.|..-+|||+++       +..+..+.
T Consensus       275 ~L~Tasf-----D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-------gr~im~L~  342 (459)
T KOG0272|consen  275 FLGTASF-----DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-------GRCIMFLA  342 (459)
T ss_pred             eeeeccc-----ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-------CcEEEEec
Confidence            9999976     89999999999999888899999999999999999999999999999999998       77888999


Q ss_pred             ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      +|..+|.+++|+|+|..||+|+.|++++|||++....+.   .+++|..-|+.+.|.|...    .+|++++.|+.++||
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g----~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEG----YFLVTASYDNTVKIW  415 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCC----eEEEEcccCcceeee
Confidence            999999999999999999999999999999999888766   8889999999999999442    899999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ..++.             .+++.   +.+|.+.|.+++.++++       .+++|++.|.++++|.
T Consensus       416 s~~~~-------------~~~ks---LaGHe~kV~s~Dis~d~-------~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  416 STRTW-------------SPLKS---LAGHEGKVISLDISPDS-------QAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCCc-------------ccchh---hcCCccceEEEEeccCC-------ceEEEeccCceeeecc
Confidence            98876             44444   67999999999999999       8999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=264.14  Aligned_cols=242  Identities=22%  Similarity=0.348  Sum_probs=204.2

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      -.+...+.||.++|.++.|.| .+..++++      ++|+     +..+.++|...|.|++|+|||+.||+|+.     |
T Consensus       105 trCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~-----d  178 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK-----D  178 (480)
T ss_pred             ceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc-----C
Confidence            356788999999999999995 88888887      6886     47888999999999999999999999976     9


Q ss_pred             eEEEEEEcCCceee-eccccccccEEEEEEcC-----CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           83 AEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSH-----DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        83 ~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                      |.|++||..+++.+ ..+.+|...|++++|.|     ..++|++++.||.++|||+..       ...+..+.+|..+|+
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-------~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-------GTCVRTLSGHTASVT  251 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------ceEEEEeccCccceE
Confidence            99999999998776 56899999999999987     556999999999999999987       677889999999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEEccCCccee------------------------------------------------
Q 037555          157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVK------------------------------------------------  188 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~------------------------------------------------  188 (298)
                      |++|--+ .+|++|+.|++|++|+...+....                                                
T Consensus       252 CvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  252 CVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            9999844 589999999999999988754433                                                


Q ss_pred             ----------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          189 ----------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       189 ----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                                                  ++....+|+.-|..+.|+|++     .++++++-|..|++|+.+++      
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-----r~IASaSFDkSVkLW~g~tG------  399 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-----RYIASASFDKSVKLWDGRTG------  399 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-----cEEEEeecccceeeeeCCCc------
Confidence                                        111223455556666666666     68888888888888888877      


Q ss_pred             CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             +.+..   +++|-.+|..++|+.|.       ++|++|+.|.++++|+++
T Consensus       400 -------k~las---fRGHv~~VYqvawsaDs-------RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  400 -------KFLAS---FRGHVAAVYQVAWSADS-------RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             -------chhhh---hhhccceeEEEEeccCc-------cEEEEcCCCceEEEEEee
Confidence                   33333   77999999999999999       899999999999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.7e-41  Score=254.23  Aligned_cols=253  Identities=22%  Similarity=0.352  Sum_probs=220.3

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcC-----C
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDH-----Q   67 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~-----~   67 (298)
                      ..|.++..+...+.+.++|.+-|.++.++ |+++.++++      .+|+      ....|.+|+..|++++|.|     .
T Consensus       138 TvR~WD~~TeTp~~t~KgH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~  216 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKGHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP  216 (480)
T ss_pred             eEEeeccCCCCcceeecCCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC
Confidence            46788899999999999999999999999 788899887      4675      3678999999999999965     5


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------  140 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------  140 (298)
                      .++||++++     ||.|+|||+..++++..+.+|+.+|+|++|--+| +|++++.|++|++|+...+.....       
T Consensus       217 ~r~las~sk-----Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw  290 (480)
T KOG0271|consen  217 CRRLASSSK-----DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW  290 (480)
T ss_pred             ccceecccC-----CCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence            678999965     9999999999999999999999999999997554 899999999999999765320000       


Q ss_pred             -----------------------------------------------------------------ceeeeEEeeccCCce
Q 037555          141 -----------------------------------------------------------------DYQLIARQEAHKRII  155 (298)
Q Consensus       141 -----------------------------------------------------------------~~~~~~~~~~~~~~v  155 (298)
                                                                                       ..+++....+|...|
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence                                                                             122334556788999


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +.+.|+||++++|+++.|..|++||.++++.+.   .+.+|-.+|+.++|+.+.     .+|++|+.|.++++|++++.+
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la---sfRGHv~~VYqvawsaDs-----RLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA---SFRGHVAAVYQVAWSADS-----RLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhh---hhhhccceeEEEEeccCc-----cEEEEcCCCceEEEEEeeeee
Confidence            999999999999999999999999999999888   888999999999999998     799999999999999999863


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                                   ...   .+.+|...|.++.|+|||       ..+++++.|..+++|.
T Consensus       443 -------------l~~---DLpGh~DEVf~vDwspDG-------~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 -------------LKQ---DLPGHADEVFAVDWSPDG-------QRVASGGKDKVLRLWR  479 (480)
T ss_pred             -------------ecc---cCCCCCceEEEEEecCCC-------ceeecCCCceEEEeec
Confidence                         222   277899999999999999       8999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-41  Score=260.70  Aligned_cols=233  Identities=18%  Similarity=0.309  Sum_probs=207.0

Q ss_pred             cCCCCCceeeeccCCCccccccc------CCC-----CceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCCceEEEE
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH------TLW-----PESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTAAAEIWL   87 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~v   87 (298)
                      .+-..++..+.|+ ++++.++++      ++|     +.+.+|+||...|.++.|+|.  +..||+++     .||++++
T Consensus       172 ~gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-----~Dgtvkl  245 (459)
T KOG0272|consen  172 VGDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-----ADGTVKL  245 (459)
T ss_pred             ccCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeec-----cCCceee
Confidence            3445567777777 677788876      466     368999999999999999996  66899994     5999999


Q ss_pred             EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEE
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF  167 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (298)
                      |++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+.+       ...+....+|...|.+++|+|+|..+
T Consensus       246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-------k~ElL~QEGHs~~v~~iaf~~DGSL~  318 (459)
T KOG0272|consen  246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-------KSELLLQEGHSKGVFSIAFQPDGSLA  318 (459)
T ss_pred             eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-------chhhHhhcccccccceeEecCCCcee
Confidence            99998899999999999999999999999999999999999999998       45566778999999999999999999


Q ss_pred             EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555          168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA  247 (298)
Q Consensus       168 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  247 (298)
                      ++|+.|..-+|||+++++++.   .+.+|..+|.+++|+|+|     ..|+||+.|++++|||++..             
T Consensus       319 ~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~fsPNG-----y~lATgs~Dnt~kVWDLR~r-------------  377 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAFSPNG-----YHLATGSSDNTCKVWDLRMR-------------  377 (459)
T ss_pred             eccCccchhheeecccCcEEE---EecccccceeeEeECCCc-----eEEeecCCCCcEEEeeeccc-------------
Confidence            999999999999999999988   778899999999999999     89999999999999999976             


Q ss_pred             ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ..+..   ..+|..-|+.++|+|..      +.+|+|++.|++++||.-
T Consensus       378 ~~ly~---ipAH~nlVS~Vk~~p~~------g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  378 SELYT---IPAHSNLVSQVKYSPQE------GYFLVTASYDNTVKIWST  417 (459)
T ss_pred             cccee---cccccchhhheEecccC------CeEEEEcccCcceeeecC
Confidence            33333   66899999999999943      289999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-39  Score=236.33  Aligned_cols=236  Identities=19%  Similarity=0.312  Sum_probs=202.3

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      ...++++|++.|..+...+...+.+.++      ..|+          .++.|+||...|..+..+++|++.++++.   
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw---   83 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW---   83 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc---
Confidence            4567899999999998887655555554      1332          47889999999999999999999999965   


Q ss_pred             CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec--cCCceEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA--HKRIIWS  157 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~  157 (298)
                        |+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+...        .+..+...  +.+.|.+
T Consensus        84 --D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--------~ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   84 --DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--------VCKYTIHEDSHREWVSC  153 (315)
T ss_pred             --cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--------cEEEEEecCCCcCcEEE
Confidence              99999999999999999999999999999999999999999999999999874        33333333  3789999


Q ss_pred             EEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          158 CSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       158 ~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +.|+|+  ..+|++++.|++|++||+++.+...   .+.+|...++.++++|+|     .++++|+.||.+.+||++.+ 
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t~~vSpDG-----slcasGgkdg~~~LwdL~~~-  224 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNTVTVSPDG-----SLCASGGKDGEAMLWDLNEG-  224 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEEEEECCCC-----CEEecCCCCceEEEEEccCC-
Confidence            999997  6899999999999999999988777   788999999999999999     79999999999999999987 


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                  +.+..+    .|...|.+++|+|+.       .+|+.+ .+..|+|||+.
T Consensus       225 ------------k~lysl----~a~~~v~sl~fspnr-------ywL~~a-t~~sIkIwdl~  262 (315)
T KOG0279|consen  225 ------------KNLYSL----EAFDIVNSLCFSPNR-------YWLCAA-TATSIKIWDLE  262 (315)
T ss_pred             ------------ceeEec----cCCCeEeeEEecCCc-------eeEeec-cCCceEEEecc
Confidence                        555544    488999999999997       555554 45669999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1e-39  Score=268.54  Aligned_cols=206  Identities=24%  Similarity=0.480  Sum_probs=193.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      .+++.||.++|..+.|+|+.++|+++     ++|+++++|.+.+..++..+++|..+|.++.|+|.|-+||+++.|++-+
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlSc-----SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSC-----SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeec-----cCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            56799999999999999999999999     5699999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      +|....       ..+.+.+.+|.+.|.|+.|+|+.+++++||.|.+||+||+.++...+   .+.+|.++|.+++|+|+
T Consensus       519 LWs~d~-------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~  588 (707)
T KOG0263|consen  519 LWSTDH-------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPC  588 (707)
T ss_pred             eeeccc-------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCC
Confidence            999987       67788899999999999999999999999999999999999999887   77899999999999999


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                      |     .+|++|+.||.|.+||+.++             ..+..   +.+|.+.|.+|.|+.++       ..||++|.|
T Consensus       589 G-----r~LaSg~ed~~I~iWDl~~~-------------~~v~~---l~~Ht~ti~SlsFS~dg-------~vLasgg~D  640 (707)
T KOG0263|consen  589 G-----RYLASGDEDGLIKIWDLANG-------------SLVKQ---LKGHTGTIYSLSFSRDG-------NVLASGGAD  640 (707)
T ss_pred             C-----ceEeecccCCcEEEEEcCCC-------------cchhh---hhcccCceeEEEEecCC-------CEEEecCCC
Confidence            9     79999999999999999987             33333   66799999999999999       899999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      ++|++||+.
T Consensus       641 nsV~lWD~~  649 (707)
T KOG0263|consen  641 NSVRLWDLT  649 (707)
T ss_pred             CeEEEEEch
Confidence            999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=222.56  Aligned_cols=255  Identities=15%  Similarity=0.223  Sum_probs=216.3

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCC------C-ceEEeccCCCceEEEEEcCCCC
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLW------P-ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~------~-~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      |+..+|.++..+|.+..++......|..+... |+...++.+     +++      | ++.++.+|+..|+++.|..+|+
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT-pdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgr   96 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEIT-PDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGR   96 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCccceeeEEEc-CCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCe
Confidence            78889999999999999999988999999888 555555555     233      2 6889999999999999999999


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      .+++|     ++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....       ....+.
T Consensus        97 WMyTg-----seDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-------c~~~li  163 (311)
T KOG0315|consen   97 WMYTG-----SEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-------CTHELI  163 (311)
T ss_pred             EEEec-----CCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc-------cccccC
Confidence            99999     569999999999877666666 88999999999999999999999999999998732       222222


Q ss_pred             -ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc---ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          150 -AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS---SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       150 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                       .....|.++...|+|.+++.+...|..++|++-+..   .+.++..++.|+..+..+.++|++     ++|++++.|.+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-----k~lat~ssdkt  238 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-----KYLATCSSDKT  238 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-----cEEEeecCCce
Confidence             234679999999999999999999999999997643   344555677899999999999999     89999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++||+.+..-            +...   .+.+|...+++++||.|+       .+|+|++.|+.+++|++.
T Consensus       239 v~iwn~~~~~------------kle~---~l~gh~rWvWdc~FS~dg-------~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  239 VKIWNTDDFF------------KLEL---VLTGHQRWVWDCAFSADG-------EYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEEecCCce------------eeEE---EeecCCceEEeeeeccCc-------cEEEecCCCCceeecccc
Confidence            9999987541            1111   266899999999999999       899999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=233.08  Aligned_cols=250  Identities=20%  Similarity=0.323  Sum_probs=226.1

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      ++.++.++..+|+....|.||.++|..+.|. ..+..+++.      .+|+      +++.+.+|...|.++.|-|.|.+
T Consensus       129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~  207 (406)
T KOG0295|consen  129 DATIKVFDTETGELERSLRGHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH  207 (406)
T ss_pred             CceEEEEEccchhhhhhhhccccceeEEEEe-cCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence            4678999999999999999999999999998 556666664      5775      46778899999999999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      ++++++     |.+|+.|++.++-++.+|.+|...|..++.+.||.++++++.|.++++|-+.+       ..+...+..
T Consensus       208 ilS~sr-----D~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-------~~~k~~lR~  275 (406)
T KOG0295|consen  208 ILSCSR-----DNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-------KQCKAELRE  275 (406)
T ss_pred             eeeccc-----ccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-------chhhhhhhc
Confidence            999965     89999999999999999999999999999999999999999999999999987       555677888


Q ss_pred             cCCceEEEEEccCC---------------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          151 HKRIIWSCSWNPFG---------------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       151 ~~~~v~~~~~~~~~---------------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                      |+.+|.+++|.|..               .++.+++.|++|++||+.++.++.   ++.+|...|..++|+|.|     .
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~G-----k  347 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGG-----K  347 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE---EEecccceeeeeEEcCCC-----e
Confidence            99999999997632               489999999999999999998888   888999999999999999     8


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ||+++.+|+++++||+++.             +++..+.   .|..-|++++|+.+.       .+++||+-|.++++|.
T Consensus       348 yi~ScaDDktlrvwdl~~~-------------~cmk~~~---ah~hfvt~lDfh~~~-------p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNL-------------QCMKTLE---AHEHFVTSLDFHKTA-------PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEEEecCCcEEEEEeccc-------------eeeeccC---CCcceeEEEecCCCC-------ceEEeccccceeeeee
Confidence            9999999999999999988             7777754   699999999999998       7999999999999997


Q ss_pred             e
Q 037555          296 V  296 (298)
Q Consensus       296 ~  296 (298)
                      -
T Consensus       405 c  405 (406)
T KOG0295|consen  405 C  405 (406)
T ss_pred             c
Confidence            4

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=220.90  Aligned_cols=250  Identities=18%  Similarity=0.283  Sum_probs=202.5

Q ss_pred             eeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555           10 ERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQ   78 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~   78 (298)
                      +...|..+..+.||+..|..+... +++.+..++      ++|+     ..+.|.||...|++++|++|.+.+++|+.  
T Consensus        49 d~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr--  125 (315)
T KOG0279|consen   49 DIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR--  125 (315)
T ss_pred             ccccCceeeeeeccceEecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC--
Confidence            566788899999999999999888 556555554      5775     36789999999999999999999999965  


Q ss_pred             CCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555           79 STAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI  154 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                         |.+|++|++... +..++..  +.+.|+|++|+|+  ..+|++++.|+++++||+++       .+....+.+|.+.
T Consensus       126 ---DkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-------~~l~~~~~gh~~~  194 (315)
T KOG0279|consen  126 ---DKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-------CQLRTTFIGHSGY  194 (315)
T ss_pred             ---cceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-------cchhhcccccccc
Confidence               999999999744 4444432  3789999999997  67999999999999999998       6677888899999


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ++.++++|||.+.++|+.||.+.+||++.++.+.   .+. +...|.+++|+|..      +.++...+..|+|||+.+.
T Consensus       195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---sl~-a~~~v~sl~fspnr------ywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---SLE-AFDIVNSLCFSPNR------YWLCAATATSIKIWDLESK  264 (315)
T ss_pred             EEEEEECCCCCEEecCCCCceEEEEEccCCceeE---ecc-CCCeEeeEEecCCc------eeEeeccCCceEEEeccch
Confidence            9999999999999999999999999999998866   554 78999999999986      4444445667999999987


Q ss_pred             ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .............       ..........+++|+++|       ..|+++-.|+.|++|.+.
T Consensus       265 ~~v~~l~~d~~g~-------s~~~~~~~clslaws~dG-------~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  265 AVVEELKLDGIGP-------SSKAGDPICLSLAWSADG-------QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhhhcccccccc-------ccccCCcEEEEEEEcCCC-------cEEEeeecCCcEEEEEee
Confidence            4433211110000       012234456789999999       899999999999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7e-36  Score=217.57  Aligned_cols=260  Identities=21%  Similarity=0.326  Sum_probs=207.9

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC--------ceEEe-ccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------ESHKL-YGHGNELFSLCCDHQGKLVASSCKAQST   80 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------~~~~~-~~h~~~v~~~~~s~~~~~l~~~~~~~~~   80 (298)
                      .+..+++|.+.+..+++.|-.+..+++.      ++|.        +...+ .+|+..|.+++|+|.|++||+++.    
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF----   81 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF----   81 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec----
Confidence            4567889999999999996656666665      3443        33333 269999999999999999999966    


Q ss_pred             CceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           81 AAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        81 ~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                       |.++.||.-..+  +++.++.+|+..|.+++|+++|++||+|++|+.|.||.+.....    ..+...+.+|...|..+
T Consensus        82 -D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE----fec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   82 -DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE----FECIAVLQEHTQDVKHV  156 (312)
T ss_pred             -cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc----EEEEeeeccccccccEE
Confidence             899999987644  67888999999999999999999999999999999999985433    77889999999999999


Q ss_pred             EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc--
Q 037555          159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT--  236 (298)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--  236 (298)
                      .|+|...+|++++.|++|++|+-.........+++.+|...|.+++|++.+     ..|+++++|+.|+||...+.-.  
T Consensus       157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-----~rl~s~sdD~tv~Iw~~~~~~~~~  231 (312)
T KOG0645|consen  157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-----SRLVSCSDDGTVSIWRLYTDLSGM  231 (312)
T ss_pred             EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-----ceEEEecCCcceEeeeeccCcchh
Confidence            999999999999999999999887555455556888999999999999998     7999999999999998543211  


Q ss_pred             --cccc----------CCCCCCcceeee---------------eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          237 --NDVS----------TPAPSTANIIIR---------------FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       237 --~~~~----------~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                        ...+          ..+.+  ..+..               ......|...|+++.|+|...      ++|++|+.||
T Consensus       232 ~sr~~Y~v~W~~~~IaS~ggD--~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~------~~L~s~~DDG  303 (312)
T KOG0645|consen  232 HSRALYDVPWDNGVIASGGGD--DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS------NRLASGGDDG  303 (312)
T ss_pred             cccceEeeeecccceEeccCC--CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC------CceeecCCCc
Confidence              0000          00000  00111               111346888999999999643      7999999999


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      .|++|.+.
T Consensus       304 ~v~~W~l~  311 (312)
T KOG0645|consen  304 IVNFWELE  311 (312)
T ss_pred             eEEEEEec
Confidence            99999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-36  Score=221.17  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=213.2

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------C-----------CceEEeccCCCceEEEEEcC
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------W-----------PESHKLYGHGNELFSLCCDH   66 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~h~~~v~~~~~s~   66 (298)
                      +.+=.|+.-+.+.++.+.-...-|-..+|. |.+..++.+-+      +           +..+.+.+|++-+.|+.|-+
T Consensus        77 GklIvWDs~TtnK~haipl~s~WVMtCA~s-PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d  155 (343)
T KOG0286|consen   77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYS-PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD  155 (343)
T ss_pred             CeEEEEEcccccceeEEecCceeEEEEEEC-CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC
Confidence            344456677777788888777888888888 66667666522      1           23567899999999999988


Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      |+ .|++++     .|.+.-+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.       ...+
T Consensus       156 D~-~ilT~S-----GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-------~~c~  222 (343)
T KOG0286|consen  156 DN-HILTGS-----GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-------GQCV  222 (343)
T ss_pred             CC-ceEecC-----CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-------ccee
Confidence            55 566673     489999999999999999999999999999999 999999999999999999998       6778


Q ss_pred             EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                      +.+.+|+..|++++|.|+|.-|++|++|++.++||+|..+.+..+. ......+|++++|+..|     .+|++|..|..
T Consensus       223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SG-----RlLfagy~d~~  296 (343)
T KOG0286|consen  223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSG-----RLLFAGYDDFT  296 (343)
T ss_pred             EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccc-----cEEEeeecCCc
Confidence            9999999999999999999999999999999999999988876443 23345789999999999     79999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +.+||.-.+             +....   +.+|...|+++..+|||       ..++|++.|..+|||.
T Consensus       297 c~vWDtlk~-------------e~vg~---L~GHeNRvScl~~s~DG-------~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  297 CNVWDTLKG-------------ERVGV---LAGHENRVSCLGVSPDG-------MAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEeecccc-------------ceEEE---eeccCCeeEEEEECCCC-------cEEEecchhHheeecC
Confidence            999999876             33333   55899999999999999       8999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.8e-38  Score=240.26  Aligned_cols=237  Identities=18%  Similarity=0.298  Sum_probs=209.8

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      -..+..|..+|.++.++ +.+..++++      +.|.    .++.+..|. ..|++++|+|+...++++     ++|++|
T Consensus       131 EtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~-----SdDg~i  204 (464)
T KOG0284|consen  131 ETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC-----SDDGTI  204 (464)
T ss_pred             HHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEe-----cCCCeE
Confidence            34568999999999998 677777776      4664    355566666 899999999999999999     569999


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH  165 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (298)
                      +|||....+....+.+|.-.|.++.|+|...++++++.|..|++||.++       ..++..+..|...|..+.|+|+++
T Consensus       205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-------g~cl~tlh~HKntVl~~~f~~n~N  277 (464)
T KOG0284|consen  205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-------GSCLATLHGHKNTVLAVKFNPNGN  277 (464)
T ss_pred             EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-------cchhhhhhhccceEEEEEEcCCCC
Confidence            9999998888888999999999999999999999999999999999998       678899999999999999999999


Q ss_pred             EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                      +|++++.|..++++|+++.+.++   .+.+|...++++.|+|...    .+|.+|+.||.|..|.+...           
T Consensus       278 ~Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~----~lftsgg~Dgsvvh~~v~~~-----------  339 (464)
T KOG0284|consen  278 WLLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNE----SLFTSGGSDGSVVHWVVGLE-----------  339 (464)
T ss_pred             eeEEccCCceEEEEehhHhHHHH---Hhhcchhhheeeccccccc----cceeeccCCCceEEEecccc-----------
Confidence            99999999999999999877777   7888999999999999886    89999999999999998744           


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                        .++..+  -.+|...|++++|+|-|       .+|++|+.|.++++|.
T Consensus       340 --~p~~~i--~~AHd~~iwsl~~hPlG-------hil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  340 --EPLGEI--PPAHDGEIWSLAYHPLG-------HILATGSNDRTVRFWT  378 (464)
T ss_pred             --ccccCC--Ccccccceeeeeccccc-------eeEeecCCCcceeeec
Confidence              233333  34799999999999999       9999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-36  Score=234.80  Aligned_cols=244  Identities=20%  Similarity=0.308  Sum_probs=203.5

Q ss_pred             CCCCCceeeeccCCCccccccc------CCCCceE---------Eec------c----CCCceEEEEEcCCCCEEEeEec
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH------TLWPESH---------KLY------G----HGNELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~---------~~~------~----h~~~v~~~~~s~~~~~l~~~~~   76 (298)
                      .|...|.+.+++|.....++.+      ++|....         .|+      +    -...|++++|+.+|.+||+|+ 
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~-  254 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS-  254 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee-
Confidence            3888999999997666555554      5665332         011      1    225699999999999999995 


Q ss_pred             cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----------------
Q 037555           77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI----------------  140 (298)
Q Consensus        77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------  140 (298)
                          .||.+++|+.. |..+.++..|.++|.++.|+.+|++|++++.|+++.+||..++...+.                
T Consensus       255 ----~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~  329 (524)
T KOG0273|consen  255 ----EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN  329 (524)
T ss_pred             ----cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence                59999999986 778889999999999999999999999999999999999854331100                


Q ss_pred             ------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          141 ------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       141 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                                        ...++.++.+|.++|.++.|+|.+.+|+++++|++++||.........   .+..|...|..
T Consensus       330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t  406 (524)
T KOG0273|consen  330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYT  406 (524)
T ss_pred             ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh---hhhhhccceee
Confidence                              234556777899999999999999999999999999999998887777   77789999999


Q ss_pred             EEEeeccc----cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          203 LSWVGLDR----QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       203 ~~~~~~~~----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      +.|+|.++    ...+..+++++.|+.|++||+..+             .++..   +..|..+|.+++|+|++      
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------v~i~~---f~kH~~pVysvafS~~g------  464 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------VPIHT---LMKHQEPVYSVAFSPNG------  464 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------ceeEe---eccCCCceEEEEecCCC------
Confidence            99999886    223468999999999999999987             66666   44699999999999999      


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                       .++++|+.||.|.+|+.+
T Consensus       465 -~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  465 -RYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             -cEEEecCCCCeeEecccc
Confidence             899999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=211.05  Aligned_cols=214  Identities=22%  Similarity=0.403  Sum_probs=188.0

Q ss_pred             ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCC---ceeeecc-ccccccEEEEEEcCCCCEEEEEe
Q 037555           48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRL-QSHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      ..+.+.+|++.|..++|+|- |..||+++     .|+.|++|+...   ..+...+ .+|+..|.+++|+|.|++|++++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence            46788999999999999997 88999994     599999999984   3344444 36999999999999999999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .|.++.||.-....     .+.+..+.+|..+|.+++|+++|++||+++.|..|-+|.+...........+++|...|..
T Consensus        81 FD~t~~Iw~k~~~e-----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   81 FDATVVIWKKEDGE-----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             ccceEEEeecCCCc-----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            99999999876443     7889999999999999999999999999999999999999977777777788899999999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      +.|+|..     .+|++++.|.+|++|+-...          ..+.+...   +.+|...|.+++|++.|       ..|
T Consensus       156 V~WHPt~-----dlL~S~SYDnTIk~~~~~~d----------ddW~c~~t---l~g~~~TVW~~~F~~~G-------~rl  210 (312)
T KOG0645|consen  156 VIWHPTE-----DLLFSCSYDNTIKVYRDEDD----------DDWECVQT---LDGHENTVWSLAFDNIG-------SRL  210 (312)
T ss_pred             EEEcCCc-----ceeEEeccCCeEEEEeecCC----------CCeeEEEE---ecCccceEEEEEecCCC-------ceE
Confidence            9999988     79999999999999987632          23456666   45799999999999999       899


Q ss_pred             EeeeCCCcEEEeEe
Q 037555          283 ASCGADNTVRVFQV  296 (298)
Q Consensus       283 ~s~~~d~~i~iw~~  296 (298)
                      ++|+.|++++||.+
T Consensus       211 ~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRL  224 (312)
T ss_pred             EEecCCcceEeeee
Confidence            99999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.5e-35  Score=215.57  Aligned_cols=213  Identities=16%  Similarity=0.298  Sum_probs=191.1

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..++|+||.+.|.++.|++|.+++++++     .||.+.|||.-+...++.+......|..++|+|.|++++.|+.|+..
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            4588999999999999999999999994     59999999999888888888888999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .||++........ .+..+.+.+|.+.+.++.|-+ ...|++++.|.+..+||+++++...   .+.+|.+.|.++.+.|
T Consensus       122 siy~ls~~d~~g~-~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  122 SIYPLSTRDAEGN-VRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSP  196 (343)
T ss_pred             EEEeccccccccc-ceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCC
Confidence            9999986533222 456678899999999999987 5679999999999999999999888   8889999999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ...    +.+++|+-|+..++||++.+             .+...   +.+|...|++++|.|+|       .-+++|+.
T Consensus       197 ~~~----ntFvSg~cD~~aklWD~R~~-------------~c~qt---F~ghesDINsv~ffP~G-------~afatGSD  249 (343)
T KOG0286|consen  197 SDG----NTFVSGGCDKSAKLWDVRSG-------------QCVQT---FEGHESDINSVRFFPSG-------DAFATGSD  249 (343)
T ss_pred             CCC----CeEEecccccceeeeeccCc-------------ceeEe---ecccccccceEEEccCC-------CeeeecCC
Confidence            432    89999999999999999988             55555   55899999999999999       89999999


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      |++.|+||++
T Consensus       250 D~tcRlyDlR  259 (343)
T KOG0286|consen  250 DATCRLYDLR  259 (343)
T ss_pred             CceeEEEeec
Confidence            9999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=222.94  Aligned_cols=244  Identities=20%  Similarity=0.361  Sum_probs=212.3

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      ++.+.+.+|..+|..+.+.|.. -.++.+      +.|+     ....++||.+.|..++|+..|++||+++.     |-
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs-----Dl  172 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS-----DL  172 (406)
T ss_pred             CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC-----cc
Confidence            5677788899999999998543 333333      2332     46778999999999999999999999965     66


Q ss_pred             EEEEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           84 EIWLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        84 ~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      .+++||.++ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+       +..+.++.+|...|..++.+.
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-------g~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-------GYCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-------ceeEEeccCchHhEEEEEecC
Confidence            799999986 567778889999999999999999999999999999999998       778999999999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------cCCccEEEEeecCCcEEEEEee
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------QKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ||..+++++.|.+|++|-+.++++..   .+..|+.+|.+++|.|...          ..++.++.+++.|+.|++||+.
T Consensus       246 DGti~As~s~dqtl~vW~~~t~~~k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~  322 (406)
T KOG0295|consen  246 DGTIIASCSNDQTLRVWVVATKQCKA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS  322 (406)
T ss_pred             CeeEEEecCCCceEEEEEeccchhhh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence            99999999999999999999987766   6667999999999999764          1234699999999999999999


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++             .++..   +.+|...|..++|+|.|       ++|+++..|+++++||++
T Consensus       323 tg-------------~cL~t---L~ghdnwVr~~af~p~G-------kyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  323 TG-------------MCLFT---LVGHDNWVRGVAFSPGG-------KYILSCADDKTLRVWDLK  364 (406)
T ss_pred             CC-------------eEEEE---EecccceeeeeEEcCCC-------eEEEEEecCCcEEEEEec
Confidence            88             66666   55899999999999999       899999999999999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2e-36  Score=231.85  Aligned_cols=230  Identities=21%  Similarity=0.340  Sum_probs=197.8

Q ss_pred             CCCceeeeccCCCccccccc------CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC
Q 037555           24 PDAVPAVFTEPPIEDQLAWH------TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS   92 (298)
Q Consensus        24 ~~~v~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~   92 (298)
                      .-.|..+.+. |.+..+.++      +||.-     -..++.|..+|+++.|++++..+++|     +.+|.|++|+.. 
T Consensus        96 kc~V~~v~Wt-PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSg-----D~gG~iKyWqpn-  168 (464)
T KOG0284|consen   96 KCPVNVVRWT-PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISG-----DKGGMIKYWQPN-  168 (464)
T ss_pred             ccceeeEEEc-CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEc-----CCCceEEecccc-
Confidence            3456777777 666777666      57753     12346899999999999999999999     669999999987 


Q ss_pred             ceeeeccccc-cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555           93 WKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus        93 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      ...++.++.| ...|++++|+|+...|++++.||+|+|||...       .+....+.+|.-.|.+++|+|...++++++
T Consensus       169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-------~kee~vL~GHgwdVksvdWHP~kgLiasgs  241 (464)
T KOG0284|consen  169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-------PKEERVLRGHGWDVKSVDWHPTKGLIASGS  241 (464)
T ss_pred             hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-------CchhheeccCCCCcceeccCCccceeEEcc
Confidence            4455566655 49999999999999999999999999999987       445566789999999999999999999999


Q ss_pred             CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555          172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII  251 (298)
Q Consensus       172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  251 (298)
                      .|..|++||.+++.++.   ++..|+..|..+.|+|++     ++|++++.|..++++|+++.+                
T Consensus       242 kDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~-----N~Llt~skD~~~kv~DiR~mk----------------  297 (464)
T KOG0284|consen  242 KDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNG-----NWLLTGSKDQSCKVFDIRTMK----------------  297 (464)
T ss_pred             CCceeEeecCCCcchhh---hhhhccceEEEEEEcCCC-----CeeEEccCCceEEEEehhHhH----------------
Confidence            99999999999999998   888999999999999998     899999999999999998542                


Q ss_pred             eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+..+++|...|+++.|+|-..      .+|.+++.||.|..|.+.
T Consensus       298 El~~~r~Hkkdv~~~~WhP~~~------~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHPLNE------SLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             HHHHhhcchhhheeeccccccc------cceeeccCCCceEEEecc
Confidence            2233778999999999999764      799999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=241.94  Aligned_cols=241  Identities=18%  Similarity=0.278  Sum_probs=209.2

Q ss_pred             ccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      ..++..+..|..+.|.|... .+.++      .+|+     .+..|..|.++|..++|+|++.++++|     ++|..|+
T Consensus         3 tkfEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSG-----GDDykIk   76 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSG-----GDDYKIK   76 (1202)
T ss_pred             chhhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEec-----CCccEEE
Confidence            45667778889999995543 44333      6776     578889999999999999999999999     5699999


Q ss_pred             EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555           87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus        87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (298)
                      ||+..+.+++.++.+|-..|..+.|++.-.+|+++|.|-+|+||+.++       .+++..+.+|...|.|..|+|....
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-------r~~iavltGHnHYVMcAqFhptEDl  149 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-------RKCIAVLTGHNHYVMCAQFHPTEDL  149 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-------CceEEEEecCceEEEeeccCCccce
Confidence            999999999999999999999999999999999999999999999998       7789999999999999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCcce--------------------------eeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555          167 FATGSRDKTVKIWAVENKSSV--------------------------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVG  220 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g  220 (298)
                      ++++|-|.+||+||+...+..                          .....+.+|...|+-++|+|.-     .+|++|
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-----pliVSG  224 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-----PLIVSG  224 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-----ceEEec
Confidence            999999999999999742110                          0112456899999999999998     699999


Q ss_pred             ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++|..|++|.+...              ....+....+|...|.++-|+|..       .++++.|+|++|++||++
T Consensus       225 ~DDRqVKlWrmnet--------------KaWEvDtcrgH~nnVssvlfhp~q-------~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNET--------------KAWEVDTCRGHYNNVSSVLFHPHQ-------DLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             CCcceeeEEEeccc--------------cceeehhhhcccCCcceEEecCcc-------ceeEecCCCccEEEEecc
Confidence            99999999998764              334455578999999999999998       899999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.6e-34  Score=236.77  Aligned_cols=241  Identities=19%  Similarity=0.258  Sum_probs=202.6

Q ss_pred             eeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555            8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~   76 (298)
                      ..+..++.....+-||.++|....|. |....+.+.      ++|.     .+-.++||..||.++.|+|.|-++|+++ 
T Consensus       435 ~~D~~~~~~~~~L~GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas-  512 (707)
T KOG0263|consen  435 MLDDDSSGTSRTLYGHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS-  512 (707)
T ss_pred             hccccCCceeEEeecCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC-
Confidence            34455566667799999999999999 555666555      5664     5777889999999999999999999995 


Q ss_pred             cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                          .|++-++|......+++.+.+|-+.|.|+.|+|+.+++++||.|.++++||+.+       +..++.+.+|.++|.
T Consensus       513 ----~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-------G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  513 ----HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-------GNSVRIFTGHKGPVT  581 (707)
T ss_pred             ----CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-------CcEEEEecCCCCceE
Confidence                599999999999999999999999999999999999999999999999999998       667889999999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      +++|+|+|++|++|+.||.|++||+.+++.+.   .+.+|.+.|.++.|+.++     .+|++|+.|.+|++||+.....
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg-----~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDG-----NVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCC-----CEEEecCCCCeEEEEEchhhcc
Confidence            99999999999999999999999999998888   777899999999999999     8999999999999999976543


Q ss_pred             cccc-----------CCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          237 NDVS-----------TPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       237 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      ....           .....+.-.+..+   ..-..+|..+.|...+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~llgs~---~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  654 LLNLGHISTSNSAITQENNASSLLLGSF---YTKNTPVVGLHFTRRN  697 (707)
T ss_pred             cccccccccccccccccCCCCcceeeee---eecCceEEEEEEeccc
Confidence            3000           0001111223333   3356789999998876

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-33  Score=222.35  Aligned_cols=258  Identities=17%  Similarity=0.295  Sum_probs=211.3

Q ss_pred             eeeeecCcccccccCCCCCceeeeccCCCcccccccC-----------CCCceEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555            8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT-----------LWPESHKLYGHGNELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~   76 (298)
                      .|--++|+.+..+.||...|..+.|.|...-++++..           -++...+++.|..-|.|+.|+|||.++|+++ 
T Consensus       131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-  209 (603)
T KOG0318|consen  131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-  209 (603)
T ss_pred             EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-
Confidence            4557889999999999999999999988877777762           2233556678999999999999999999995 


Q ss_pred             cCCCCceEEEEEEcCCceeeeccc---cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------------
Q 037555           77 AQSTAAAEIWLWEVGSWKAMGRLQ---SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------------  140 (298)
Q Consensus        77 ~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------  140 (298)
                          .||+|.+||-.+++.+..+.   +|.+.|.++.|+||+..+++++.|.+++|||+.+.+....             
T Consensus       210 ----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG  285 (603)
T KOG0318|consen  210 ----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG  285 (603)
T ss_pred             ----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence                59999999999999998887   8999999999999999999999999999999986541110             


Q ss_pred             -----------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee---------
Q 037555          141 -----------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK---------  188 (298)
Q Consensus       141 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---------  188 (298)
                                             ...+++.+.+|...|+++..+|++.+|++|+.||.|.-||...+..-.         
T Consensus       286 ~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq  365 (603)
T KOG0318|consen  286 CLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ  365 (603)
T ss_pred             EEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccce
Confidence                                   223456667899999999999999999999999999999987522110         


Q ss_pred             --------------------------------------------------------------------------------
Q 037555          189 --------------------------------------------------------------------------------  188 (298)
Q Consensus       189 --------------------------------------------------------------------------------  188 (298)
                                                                                                      
T Consensus       366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~  445 (603)
T KOG0318|consen  366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE  445 (603)
T ss_pred             EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          189 ---------------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       189 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                                                       +......|.++|++++++|++     .+|++|...+.+.+||+.+.+
T Consensus       446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-----~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-----AYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-----cEEEEeccCCcEEEEEcccCc
Confidence                                             011122466677888888887     899999999999999998763


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .               ....+.-|...|++|+|+|+.       .++|||+.|-.|.||+++
T Consensus       521 ~---------------~~~~w~FHtakI~~~aWsP~n-------~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  521 V---------------KTNRWAFHTAKINCVAWSPNN-------KLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             e---------------ecceeeeeeeeEEEEEeCCCc-------eEEEeccccceEEEEEcc
Confidence            2               111133499999999999999       899999999999999975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.9e-34  Score=216.87  Aligned_cols=226  Identities=19%  Similarity=0.327  Sum_probs=194.6

Q ss_pred             CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555           44 TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        44 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      .-|...+.+.+|.+.|.|+++.|....|++|+     .|++|+|||+.+++...++.+|...|..+++++-..++++++.
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            34566788899999999999999999999994     5999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      |+.|+.||+..       .+.++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+.   .+.+|..+|.++
T Consensus       214 dk~VKCwDLe~-------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH~~~V~~V  283 (460)
T KOG0285|consen  214 DKQVKCWDLEY-------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGHTNPVASV  283 (460)
T ss_pred             CCeeEEEechh-------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCCCCcceeE
Confidence            99999999997       67788999999999999999999999999999999999999988877   888999999999


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-----------------CCccee--------eeeccCCc
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-----------------STANII--------IRFDPFAC  258 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~--------~~~~~~~~  258 (298)
                      .+.|..     ..+++|+.|++|++||++.++.....+-..                 .....+        ..+..+.+
T Consensus       284 ~~~~~d-----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg  358 (460)
T KOG0285|consen  284 MCQPTD-----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG  358 (460)
T ss_pred             EeecCC-----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence            999988     579999999999999999875432211110                 000111        11223567


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |...|++++.+.|+        ++++|+.+|.|.+||.+
T Consensus       359 h~~iintl~~nsD~--------v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  359 HNAIINTLSVNSDG--------VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             ccceeeeeeeccCc--------eEEEcCCceEEEEEecC
Confidence            88899999998887        99999999999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-34  Score=231.55  Aligned_cols=237  Identities=16%  Similarity=0.260  Sum_probs=209.6

Q ss_pred             cccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEE
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL   87 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~v   87 (298)
                      .+..+++.|.++.+.|. +..+..+      .+|+     +++.+.-..-||.+..|-+..+.+++|     ++|..|+|
T Consensus         8 k~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G-----sDD~~IrV   81 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG-----SDDMQIRV   81 (794)
T ss_pred             HhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe-----cCCceEEE
Confidence            45568888999998844 4443333      4564     577777788899999999999999999     56999999


Q ss_pred             EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCE
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHE  166 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  166 (298)
                      |+.++++.+..|..|...|.+++.+|...+++++|.|-+|++||.+..      +.+.+.+.+|...|.+++|+| |.+.
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------wa~~qtfeGH~HyVMqv~fnPkD~nt  155 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------WACEQTFEGHEHYVMQVAFNPKDPNT  155 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc------eeeeeEEcCcceEEEEEEecCCCccc
Confidence            999999999999999999999999999999999999999999999874      888999999999999999999 6689


Q ss_pred             EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                      |++++-|++|++|.+.+..+..   ++.+|...|+++.+-+.+.   ..+|++|++|..|+|||..+.            
T Consensus       156 FaS~sLDrTVKVWslgs~~~nf---Tl~gHekGVN~Vdyy~~gd---kpylIsgaDD~tiKvWDyQtk------------  217 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNF---TLEGHEKGVNCVDYYTGGD---KPYLISGADDLTIKVWDYQTK------------  217 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCce---eeeccccCcceEEeccCCC---cceEEecCCCceEEEeecchH------------
Confidence            9999999999999999888777   7889999999999998652   259999999999999999987            


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       .|+..   +.+|...|..+.|+|.-       .+++||++||++|||+-
T Consensus       218 -~CV~T---LeGHt~Nvs~v~fhp~l-------piiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  218 -SCVQT---LEGHTNNVSFVFFHPEL-------PIIISGSEDGTVRIWNS  256 (794)
T ss_pred             -HHHHH---hhcccccceEEEecCCC-------cEEEEecCCccEEEecC
Confidence             56555   66899999999999998       79999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.6e-33  Score=232.53  Aligned_cols=237  Identities=22%  Similarity=0.345  Sum_probs=195.3

Q ss_pred             cccccCC-CCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           17 LDTLESV-PDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        17 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      ...+..| ...|.++.|. +.+..++..      .+|.       +.+.+.+|...|.+++|+|++++++++     +.|
T Consensus       151 ~~~~~~~~~~sv~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-----s~D  224 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-----SDD  224 (456)
T ss_pred             eeeecccccCceEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-----cCC
Confidence            3344444 6778888888 445555554      2332       356668999999999999999999999     459


Q ss_pred             eEEEEEEc-CCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           83 AEIWLWEV-GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        83 ~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      ++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++       ..+...+..|.+.|.+++|+
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-------~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-------GECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-------CeEEEeeeccCCceEEEEEC
Confidence            99999999 55588899999999999999999999999999999999999998       67899999999999999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcc--eeeeeecCCCCC--ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSS--VKQILALPPFNS--SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN  237 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  237 (298)
                      +++++|++++.|+.|++||+.++..  ..   .+..+..  +++++.|+|++     .+++++..|+.+++||+....  
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~fsp~~-----~~ll~~~~d~~~~~w~l~~~~--  367 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLK---LLSGAENSAPVTSVQFSPNG-----KYLLSASLDRTLKLWDLRSGK--  367 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeee---cccCCCCCCceeEEEECCCC-----cEEEEecCCCeEEEEEccCCc--
Confidence            9999999999999999999999883  34   3333333  59999999999     899999999999999999773  


Q ss_pred             cccCCCCCCcceeeeeccCCcccc---eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          238 DVSTPAPSTANIIIRFDPFACHVA---AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                 ....   +.+|..   .+.+...++.+       .++++++.|+.|++|++.
T Consensus       368 -----------~~~~---~~~~~~~~~~~~~~~~~~~~-------~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  368 -----------SVGT---YTGHSNLVRCIFSPTLSTGG-------KLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             -----------ceee---ecccCCcceeEecccccCCC-------CeEEEEeCCceEEEEeCC
Confidence                       3333   233444   34445556667       899999999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.4e-35  Score=228.41  Aligned_cols=242  Identities=18%  Similarity=0.328  Sum_probs=203.1

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCC
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA   81 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~   81 (298)
                      .+.+.++.+|+..|.++.+.|-....++++      .+|.      +++++.+|..+|.+++|+++|..+.+++.     
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf-----  278 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF-----  278 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec-----
Confidence            345788899999999999996566666665      4563      68899999999999999999999999965     


Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      |+.|++||+++|+++..|. ....++|+.|+|++ +.+++|+.|+.|+.||++.       .+.++.+..|-+.|..+.|
T Consensus       279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------GKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-------hHHHHHHHhhhhheeeeEE
Confidence            9999999999999999887 45678999999988 8999999999999999998       6778888889999999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEEccCCcceeeee-------------------------------------------ecCCCC
Q 037555          161 NPFGHEFATGSRDKTVKIWAVENKSSVKQIL-------------------------------------------ALPPFN  197 (298)
Q Consensus       161 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------------------------------~~~~~~  197 (298)
                      -+++.++++.+.|+.+++|+.+....+..+.                                           .+.+|.
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            9999999999999999999988644332110                                           111222


Q ss_pred             --CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          198 --SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       198 --~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                        +.-..+.|+|++     .+|++|+.||.+.+||.++.             +.+.   .+.+|..++..+.|+|..+  
T Consensus       431 vaGys~~v~fSpDG-----~~l~SGdsdG~v~~wdwkt~-------------kl~~---~lkah~~~ci~v~wHP~e~--  487 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDG-----RTLCSGDSDGKVNFWDWKTT-------------KLVS---KLKAHDQPCIGVDWHPVEP--  487 (503)
T ss_pred             ccCceeeEEEcCCC-----CeEEeecCCccEEEeechhh-------------hhhh---ccccCCcceEEEEecCCCc--
Confidence              223567788887     89999999999999999876             3333   3668999999999999886  


Q ss_pred             CCcceEEEeeeCCCcEEEeE
Q 037555          276 NSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       276 ~~~~~~l~s~~~d~~i~iw~  295 (298)
                          ..+|||+.||.|++|+
T Consensus       488 ----Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 ----SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ----ceeEecccCceeEecC
Confidence                8999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.9e-33  Score=201.10  Aligned_cols=212  Identities=17%  Similarity=0.328  Sum_probs=182.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      +.+++......|+.+...|+++.||+++      ...|++||+++++  ++.+|.+|...|+++.|..+|+.+++|+.||
T Consensus        32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg  105 (311)
T KOG0315|consen   32 CSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG  105 (311)
T ss_pred             EEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence            5778877777899999999999999996      5789999998875  5788999999999999999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      +++|||++..       . ......|..+|+++..+|+...|++|..+|.|++||+....+...  -++.....|.++..
T Consensus       106 t~kIWdlR~~-------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~--liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  106 TVKIWDLRSL-------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE--LIPEDDTSIQSLTV  175 (311)
T ss_pred             eEEEEeccCc-------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc--cCCCCCcceeeEEE
Confidence            9999999972       2 333445779999999999999999999999999999998765542  23445688999999


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      .|++     .+++.+...|..++|++.+....          ..+..+..++.|...+..+.+||++       .+|++|
T Consensus       176 ~~dg-----sml~a~nnkG~cyvW~l~~~~~~----------s~l~P~~k~~ah~~~il~C~lSPd~-------k~lat~  233 (311)
T KOG0315|consen  176 MPDG-----SMLAAANNKGNCYVWRLLNHQTA----------SELEPVHKFQAHNGHILRCLLSPDV-------KYLATC  233 (311)
T ss_pred             cCCC-----cEEEEecCCccEEEEEccCCCcc----------ccceEhhheecccceEEEEEECCCC-------cEEEee
Confidence            9999     79999999999999999874211          4455556678899999999999999       899999


Q ss_pred             eCCCcEEEeEec
Q 037555          286 GADNTVRVFQVN  297 (298)
Q Consensus       286 ~~d~~i~iw~~~  297 (298)
                      |.|.+++||+.+
T Consensus       234 ssdktv~iwn~~  245 (311)
T KOG0315|consen  234 SSDKTVKIWNTD  245 (311)
T ss_pred             cCCceEEEEecC
Confidence            999999999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.3e-33  Score=232.66  Aligned_cols=216  Identities=20%  Similarity=0.381  Sum_probs=186.2

Q ss_pred             CCCCceEEeccC-CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEE
Q 037555           44 TLWPESHKLYGH-GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        44 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~  120 (298)
                      ..|.....+.+| ...|.++.|+++|+.+++++     .++.+++|+....+  ....+.+|...|.+++|+|+++++++
T Consensus       146 ~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s  220 (456)
T KOG0266|consen  146 RVFSLEQTLAGHECPSVTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS  220 (456)
T ss_pred             ccceeeeeecccccCceEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEE
Confidence            445555555555 78899999999999999994     59999999997777  66777889999999999999999999


Q ss_pred             EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      ++.|++|++||+...      ...++.+.+|...|++++|+|+++++++|+.|++|++||++++++..   .+.+|...|
T Consensus       221 ~s~D~tiriwd~~~~------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~i  291 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDD------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGI  291 (456)
T ss_pred             ecCCceEEEeeccCC------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCce
Confidence            999999999999432      56789999999999999999999999999999999999999988877   788899999


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      ++++|++++     .+|++++.|+.|++||+.++...           +...+....... ++++++|+|++       .
T Consensus       292 s~~~f~~d~-----~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~~~~~~~~-~~~~~~fsp~~-------~  347 (456)
T KOG0266|consen  292 SGLAFSPDG-----NLLVSASYDGTIRVWDLETGSKL-----------CLKLLSGAENSA-PVTSVQFSPNG-------K  347 (456)
T ss_pred             EEEEECCCC-----CEEEEcCCCccEEEEECCCCcee-----------eeecccCCCCCC-ceeEEEECCCC-------c
Confidence            999999999     79999999999999999987310           233333222233 69999999999       8


Q ss_pred             EEEeeeCCCcEEEeEec
Q 037555          281 QLASCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~~d~~i~iw~~~  297 (298)
                      +|++++.|+.+++||++
T Consensus       348 ~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  348 YLLSASLDRTLKLWDLR  364 (456)
T ss_pred             EEEEecCCCeEEEEEcc
Confidence            99999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.1e-35  Score=220.43  Aligned_cols=222  Identities=18%  Similarity=0.393  Sum_probs=190.0

Q ss_pred             CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555           23 VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG   91 (298)
Q Consensus        23 ~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~   91 (298)
                      -.+.|+++.+.   .+.++++      ++|+     +.+.+.||++.|.|+.|.  .+.+++|+     .|.+|+|||++
T Consensus       196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGS-----SDsTvrvWDv~  265 (499)
T KOG0281|consen  196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGS-----SDSTVRVWDVN  265 (499)
T ss_pred             cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecC-----CCceEEEEecc
Confidence            34567887766   4444444      5775     478889999999999995  45888885     49999999999


Q ss_pred             CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555           92 SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      +++++.++-.|...|..+.|+  +.++++++.|.++.+||+..+..    ..+...+.+|...|+.+.|+  .+++++++
T Consensus       266 tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~----it~rrVLvGHrAaVNvVdfd--~kyIVsAS  337 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDFD--DKYIVSAS  337 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH----HHHHHHHhhhhhheeeeccc--cceEEEec
Confidence            999999999999999999996  45999999999999999987552    34456778999999999997  56999999


Q ss_pred             CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555          172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII  251 (298)
Q Consensus       172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  251 (298)
                      .|.+|++|++.+.+.+.   ++.+|+..|.|+.+..       .++++|+.|.+|++||+..+             .++.
T Consensus       338 gDRTikvW~~st~efvR---tl~gHkRGIAClQYr~-------rlvVSGSSDntIRlwdi~~G-------------~cLR  394 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYRD-------RLVVSGSSDNTIRLWDIECG-------------ACLR  394 (499)
T ss_pred             CCceEEEEeccceeeeh---hhhcccccceehhccC-------eEEEecCCCceEEEEecccc-------------HHHH
Confidence            99999999999998888   8889999999988765       79999999999999999988             5544


Q ss_pred             eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .   +.+|+.-|.++.|..         ..+++|+.||+|++||+.
T Consensus       395 v---LeGHEeLvRciRFd~---------krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  395 V---LEGHEELVRCIRFDN---------KRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             H---HhchHHhhhheeecC---------ceeeeccccceEEEEecc
Confidence            4   668999999999965         689999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.7e-33  Score=217.04  Aligned_cols=228  Identities=21%  Similarity=0.420  Sum_probs=195.4

Q ss_pred             CCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--
Q 037555           25 DAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--   92 (298)
Q Consensus        25 ~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--   92 (298)
                      ..|+++.++ ..+..++++      ++|.    .+.+|..|+++|.++.|+.+|.+|++++.     |+++.+||..+  
T Consensus       236 kdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-----D~ttilwd~~~g~  309 (524)
T KOG0273|consen  236 KDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-----DGTTILWDAHTGT  309 (524)
T ss_pred             CCcceEEec-CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-----CccEEEEeccCce
Confidence            457788887 566777776      5674    46778889999999999999999999955     77777777633  


Q ss_pred             ---------------------------------------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           93 ---------------------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        93 ---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                                                             ..++.++.+|.+.|.++.|+|.+.+|++++.|++++||...
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~  389 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG  389 (524)
T ss_pred             EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence                                                   34556678899999999999999999999999999999987


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCC---------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFG---------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .       ......+..|...|..+.|+|.+         ..+++++.|++|++||+..+.++.   .+..|+.+|.+++
T Consensus       390 ~-------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysva  459 (524)
T KOG0273|consen  390 Q-------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVA  459 (524)
T ss_pred             C-------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEE
Confidence            6       45577788999999999999966         478999999999999999999888   7777999999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |+|++     .++++|+.||.|.+|+.+++             +..+...    ....|..++|+.++       .+|..
T Consensus       460 fS~~g-----~ylAsGs~dg~V~iws~~~~-------------~l~~s~~----~~~~Ifel~Wn~~G-------~kl~~  510 (524)
T KOG0273|consen  460 FSPNG-----RYLASGSLDGCVHIWSTKTG-------------KLVKSYQ----GTGGIFELCWNAAG-------DKLGA  510 (524)
T ss_pred             ecCCC-----cEEEecCCCCeeEeccccch-------------heeEeec----CCCeEEEEEEcCCC-------CEEEE
Confidence            99999     79999999999999999887             4444432    45679999999999       89999


Q ss_pred             eeCCCcEEEeEec
Q 037555          285 CGADNTVRVFQVN  297 (298)
Q Consensus       285 ~~~d~~i~iw~~~  297 (298)
                      +-.|+.+++-|++
T Consensus       511 ~~sd~~vcvldlr  523 (524)
T KOG0273|consen  511 CASDGSVCVLDLR  523 (524)
T ss_pred             EecCCCceEEEec
Confidence            9999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=225.81  Aligned_cols=250  Identities=19%  Similarity=0.325  Sum_probs=210.3

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc--C-----CCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH--T-----LWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~-----~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      +....++-+.-+.++.+.-....+..+.++ ..++.++-+  +     +|.     -+....+|...+++++++|||+++
T Consensus       287 G~f~LyelP~f~lih~LSis~~~I~t~~~N-~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i  365 (893)
T KOG0291|consen  287 GEFGLYELPDFNLIHSLSISDQKILTVSFN-STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI  365 (893)
T ss_pred             CeeEEEecCCceEEEEeecccceeeEEEec-ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE
Confidence            344566677777777777777778777777 556666554  1     232     256667999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      |+|     .+||.|+|||..++-+..+|..|+..|+.+.|+..++.+++++.||+|+.||+..       ++..+++...
T Consensus       366 aTG-----~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-------YrNfRTft~P  433 (893)
T KOG0291|consen  366 ATG-----AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-------YRNFRTFTSP  433 (893)
T ss_pred             Eec-----cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-------cceeeeecCC
Confidence            999     5699999999999999999999999999999999999999999999999999987       5666666543


Q ss_pred             -CCceEEEEEccCCCEEEEeeCCC-eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          152 -KRIIWSCSWNPFGHEFATGSRDK-TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       152 -~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                       +....+++..|.|..+.+|+.|. .|.+|++++++.+-   .+.+|.++|.+++|+|.+     ..|++++.|.+|++|
T Consensus       434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~-----~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDG-----SLLASGSWDKTVRIW  505 (893)
T ss_pred             CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEcccc-----CeEEeccccceEEEE
Confidence             34567899999999999999876 49999999999887   888999999999999999     799999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+-...            .....+.    +...+..++|+|+|       ..|+++..||.|.+||..
T Consensus       506 ~if~s~------------~~vEtl~----i~sdvl~vsfrPdG-------~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  506 DIFSSS------------GTVETLE----IRSDVLAVSFRPDG-------KELAVATLDGQITFFDIK  550 (893)
T ss_pred             EeeccC------------ceeeeEe----eccceeEEEEcCCC-------CeEEEEEecceEEEEEhh
Confidence            997642            2333332    67789999999999       899999999999999974

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=207.58  Aligned_cols=242  Identities=21%  Similarity=0.353  Sum_probs=197.9

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      .+.+..|..|.+.|.++...| ....++++      .+|+     ....+.+|++.|+++.|+.+|.+||+|     +.+
T Consensus        54 DdS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG-----dms  127 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG-----DMS  127 (399)
T ss_pred             ccceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-----CCC
Confidence            567889999999999999996 55566665      3563     578889999999999999999999999     569


Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      |.|+||...++.....+...-..+.-+.|+|.+.+|++|+.||.+.+|.+..       ....+.+.+|..++++=.|.|
T Consensus       128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~-------~~~~kv~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-------QALCKVMSGHNSPCTCGEFIP  200 (399)
T ss_pred             ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC-------cceeeEecCCCCCcccccccC
Confidence            9999999999988877766677888999999999999999999999999987       456778889999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeee---------------------------------------------------
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQIL---------------------------------------------------  191 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---------------------------------------------------  191 (298)
                      +|++++++..||+|++||++++.++..+.                                                   
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence            99999999999999999999866544221                                                   


Q ss_pred             -----------------------------------------ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          192 -----------------------------------------ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       192 -----------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                                                               ..-.|+.+|..+.|.+ .     .+|++++.+|.|+.||
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-----~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-----DYLLTACANGKVRQWD  354 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-----chheeeccCceEEeee
Confidence                                                     1112333444444444 2     4666777777777777


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+++             ++...   +.+|...|.+++.+|+.       ++++|+|.|++.++|++.
T Consensus       355 aRtG-------------~l~~~---y~GH~~~Il~f~ls~~~-------~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  355 ARTG-------------QLKFT---YTGHQMGILDFALSPQK-------RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cccc-------------ceEEE---EecCchheeEEEEcCCC-------cEEEEecCCCeEEEEecC
Confidence            7766             44444   66899999999999999       899999999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=206.16  Aligned_cols=207  Identities=23%  Similarity=0.339  Sum_probs=181.4

Q ss_pred             CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      .++..+.+|++.|+.+.|+|+|.+||+|+     .|..|.+|++. ..+....+++|.+.|..+.|.+|++.+++++.|.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk  112 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK  112 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence            35667789999999999999999999995     49999999964 3455567889999999999999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      +++.||.++       ++..+..+.|...|+.+.-+.-+ .++.+++.|+++++||+|+...++   +++ .+..++++.
T Consensus       113 ~v~~wD~~t-------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~---t~~-~kyqltAv~  181 (338)
T KOG0265|consen  113 TVRGWDAET-------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK---TFE-NKYQLTAVG  181 (338)
T ss_pred             eEEEEeccc-------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh---ccc-cceeEEEEE
Confidence            999999998       67788899999999998854444 567888999999999999988776   543 577899999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |...+     ..+++|+-|+.|++||++..             .....   +.+|..+|+.|..+|++       .++.+
T Consensus       182 f~d~s-----~qv~sggIdn~ikvWd~r~~-------------d~~~~---lsGh~DtIt~lsls~~g-------s~lls  233 (338)
T KOG0265|consen  182 FKDTS-----DQVISGGIDNDIKVWDLRKN-------------DGLYT---LSGHADTITGLSLSRYG-------SFLLS  233 (338)
T ss_pred             ecccc-----cceeeccccCceeeeccccC-------------cceEE---eecccCceeeEEeccCC-------Ccccc
Confidence            99988     68999999999999999876             44444   56899999999999999       89999


Q ss_pred             eeCCCcEEEeEec
Q 037555          285 CGADNTVRVFQVN  297 (298)
Q Consensus       285 ~~~d~~i~iw~~~  297 (298)
                      -+.|.++++||++
T Consensus       234 nsMd~tvrvwd~r  246 (338)
T KOG0265|consen  234 NSMDNTVRVWDVR  246 (338)
T ss_pred             ccccceEEEEEec
Confidence            9999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-33  Score=215.62  Aligned_cols=243  Identities=16%  Similarity=0.250  Sum_probs=199.7

Q ss_pred             cccccccCCCCCceeeeccCCCcccccccC------CCC--------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP--------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQST   80 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~   80 (298)
                      +..+.+..|.+.|.-+.|+ +.++.++++.      +|.        ..+++.+|..+|.-+.||||.++|++++.    
T Consensus       215 qt~qil~~htdEVWfl~FS-~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~----  289 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFS-HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF----  289 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEc-CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc----
Confidence            3467789999999999999 7888998873      442        36888999999999999999999999954    


Q ss_pred             CceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC-CceEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSC  158 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~  158 (298)
                       +..+.+||+.+|+....+. ++...+.+++|.|||..+++|+.|+.+..||++.        ......++.. ..|.++
T Consensus       290 -~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--------n~~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  290 -DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--------NILGNWEGVRDPKVHDL  360 (519)
T ss_pred             -hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--------chhhcccccccceeEEE
Confidence             6779999999999887765 4568899999999999999999999999999984        3333333332 568999


Q ss_pred             EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------------------
Q 037555          159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------------------------  210 (298)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------  210 (298)
                      +..+||.++++.+.|..|++++..+.....   .+ ....+|++++.+.++.                            
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~---li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh  436 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRG---LI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH  436 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhc---cc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence            999999999999999999999988765543   12 2456677777777665                            


Q ss_pred             ------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          211 ------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       211 ------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                                  ..+..++++|++|+.|+||+..++             +++..   +.||...|++++|+|..+     
T Consensus       437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-------------kll~~---LsGHs~~vNcVswNP~~p-----  495 (519)
T KOG0293|consen  437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-------------KLLAV---LSGHSKTVNCVSWNPADP-----  495 (519)
T ss_pred             cccceEEEeccCCCCcceEEecCCCceEEEEEccCC-------------ceeEe---ecCCcceeeEEecCCCCH-----
Confidence                        233479999999999999999887             55544   668999999999999876     


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                       .++|++|.||+||||...
T Consensus       496 -~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  496 -EMFASASDDGTIRIWGPS  513 (519)
T ss_pred             -HHhhccCCCCeEEEecCC
Confidence             899999999999999753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.3e-34  Score=205.79  Aligned_cols=243  Identities=21%  Similarity=0.271  Sum_probs=196.4

Q ss_pred             cccccCCCCCceeeeccC--CCcccccccC-----------CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           17 LDTLESVPDAVPAVFTEP--PIEDQLAWHT-----------LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      .++-.+|.-+|..++|+|  |.+-+++++.           .-+=+.+|.||++.|.....+.+-...|++     ..|-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasa-----aadf   81 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASA-----AADF   81 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhh-----cccc
Confidence            345679999999999986  4555666552           113378999999999999999988888888     4589


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF  163 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (298)
                      +-+|||.-+|..+.+|. |..-|.+++|+.|.++|++|+.+..+++||++.+.      .+...+.+|.+.|..+.|...
T Consensus        82 takvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~------App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK------APPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             hhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC------CCchhhcCCCCcceeEEEecc
Confidence            99999999999999998 89999999999999999999999999999998763      345677899999999999998


Q ss_pred             CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc---------------------------------
Q 037555          164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR---------------------------------  210 (298)
Q Consensus       164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------------  210 (298)
                      .+.|++.+.|++||+||.+++...+   .+. .+.+|+++.+++++.                                 
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~---sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SA  230 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQ---SLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESA  230 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEE---EEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccc
Confidence            9999999999999999999998877   333 566777888777774                                 


Q ss_pred             --cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          211 --QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       211 --~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                        .|+..++++|++|..++.||+.+++             .+..+  ..+|.++|.++.|+|+|       ...++|++|
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~Tge-------------Ei~~~--nkgh~gpVhcVrFSPdG-------E~yAsGSED  288 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGE-------------EIGSY--NKGHFGPVHCVRFSPDG-------ELYASGSED  288 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCc-------------eeeec--ccCCCCceEEEEECCCC-------ceeeccCCC
Confidence              2233455555555555555555542             11111  36899999999999999       899999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      |+|++|...
T Consensus       289 GTirlWQt~  297 (334)
T KOG0278|consen  289 GTIRLWQTT  297 (334)
T ss_pred             ceEEEEEec
Confidence            999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=206.91  Aligned_cols=250  Identities=18%  Similarity=0.270  Sum_probs=206.7

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      +...++.+|-+-|.++++. |..+.++++      ++|+     ...++.||...|..+++|+...+|+++     ++|+
T Consensus       142 Kl~rVi~gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~-----gedk  215 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA-----GEDK  215 (460)
T ss_pred             eehhhhhhccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe-----cCCC
Confidence            4567889999999999999 456677776      4775     357788999999999999999999999     5699


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF  163 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (298)
                      .|+.||++..+.++.+.+|-+.|.+++.+|.-..|++|+.|.++++||+++       ...+..+.+|..+|..+.+.|-
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-------r~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-------RASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-------cceEEEecCCCCcceeEEeecC
Confidence            999999999999999999999999999999999999999999999999998       5668899999999999999998


Q ss_pred             CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc---------------------------------
Q 037555          164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR---------------------------------  210 (298)
Q Consensus       164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------------  210 (298)
                      ...+++|+.|++|++||++.++...   .+..|+..+.+++.+|...                                 
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~---tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iint  365 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMI---TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINT  365 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeE---eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeee
Confidence            8899999999999999999987766   5555677777777776443                                 


Q ss_pred             --cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          211 --QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       211 --~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                        .....++++|++.|.+.+||.+++..-+..+         ..+.+ .......|.+.+|...+       ..|+||..
T Consensus       366 l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~---------t~vqpGSl~sEagI~as~fDktg-------~rlit~ea  429 (460)
T KOG0285|consen  366 LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ---------TIVQPGSLESEAGIFASCFDKTG-------SRLITGEA  429 (460)
T ss_pred             eeeccCceEEEcCCceEEEEEecCcCccccccc---------ccccCCccccccceeEEeecccC-------ceEEeccC
Confidence              1112588899999999999998874322100         00000 01135678999999988       89999999


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                      |.+|++|.-
T Consensus       430 dKtIk~~ke  438 (460)
T KOG0285|consen  430 DKTIKMYKE  438 (460)
T ss_pred             CcceEEEec
Confidence            999999963

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=224.43  Aligned_cols=250  Identities=22%  Similarity=0.338  Sum_probs=198.1

Q ss_pred             eeeeecCcccccccCCCCCceeeeccCCCcccccccCCCCc----------eEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555            8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPE----------SHKLYGHGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      .++.++......+.|..+.|..+.|-.|.+.+++.++.-++          .+.+.||++.|.++....+|-+|++|++|
T Consensus       307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD  386 (775)
T KOG0319|consen  307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKD  386 (775)
T ss_pred             EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCC
Confidence            34555666666666666666666666666666555532222          22344555556555544445555555543


Q ss_pred             CC------------------------------------------CCceEEEEEEcCCcee-----ee----ccccccccE
Q 037555           78 QS------------------------------------------TAAAEIWLWEVGSWKA-----MG----RLQSHSLTV  106 (298)
Q Consensus        78 ~~------------------------------------------~~d~~i~vw~~~~~~~-----~~----~~~~~~~~v  106 (298)
                      .+                                          +.|.+|++|++...+.     ..    +...|...|
T Consensus       387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI  466 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI  466 (775)
T ss_pred             ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence            31                                          4577888888764211     11    234699999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555          107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS  186 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  186 (298)
                      ++++++|+.+++++||.|.+.++|+++.       ......+.+|...|+++.|+|..+.++++|.|++|+||.+.+..+
T Consensus       467 N~Vaia~ndkLiAT~SqDktaKiW~le~-------~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC  539 (775)
T KOG0319|consen  467 NCVAIAPNDKLIATGSQDKTAKIWDLEQ-------LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC  539 (775)
T ss_pred             cceEecCCCceEEecccccceeeecccC-------ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee
Confidence            9999999999999999999999999996       778999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555          187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM  266 (298)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  266 (298)
                      ++   ++.+|...|..+.|-..+     ..|++++.||-|++|++.+.             .|...   +..|...|+++
T Consensus       540 lk---T~eGH~~aVlra~F~~~~-----~qliS~~adGliKlWnikt~-------------eC~~t---lD~H~DrvWaL  595 (775)
T KOG0319|consen  540 LK---TFEGHTSAVLRASFIRNG-----KQLISAGADGLIKLWNIKTN-------------ECEMT---LDAHNDRVWAL  595 (775)
T ss_pred             ee---eecCccceeEeeeeeeCC-----cEEEeccCCCcEEEEeccch-------------hhhhh---hhhccceeEEE
Confidence            88   899999999999999998     79999999999999999998             66665   45799999999


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +.+|..       .+++||+.||.|.+|.
T Consensus       596 ~~~~~~-------~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  596 SVSPLL-------DMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eecCcc-------ceeEecCCCeEEEEee
Confidence            999999       8999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5e-32  Score=200.22  Aligned_cols=252  Identities=17%  Similarity=0.267  Sum_probs=204.4

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      .+..+.+|++.|+...|.| .+..++++      -+|.      ....+++|.+.|+.+.|.+++..+++++     .|.
T Consensus        39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-----tDk  112 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-----TDK  112 (338)
T ss_pred             hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-----CCc
Confidence            4566789999999999995 77777776      3675      3677889999999999999999999995     599


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      +|+.||+++|+.+..+++|..-|..+.-+.-| .++.+++.|+++++||++.       ...++.+ ....+++++.|..
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-------k~~~~t~-~~kyqltAv~f~d  184 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-------KEAIKTF-ENKYQLTAVGFKD  184 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-------cchhhcc-ccceeEEEEEecc
Confidence            99999999999999999999999999854444 4677889999999999997       3334443 2467899999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc---
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV---  239 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~---  239 (298)
                      ++..+.+|+-|+.|++||++......   .+.+|..+|+.+..+|.+     .++++-+.|..+++||++.......   
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~g-----s~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYG-----SFLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             cccceeeccccCceeeeccccCcceE---EeecccCceeeEEeccCC-----CccccccccceEEEEEecccCCCCceEE
Confidence            99999999999999999999988877   788999999999999999     7888888899999999875322111   


Q ss_pred             -cCCCC----------------------C--------CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          240 -STPAP----------------------S--------TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       240 -~~~~~----------------------~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                       .....                      .        .......+..+.+|.+.|+.++|+|..       .+|.+|+.|
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-------~iils~~sd  329 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-------PIILSCSSD  329 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-------cEEEEeccC
Confidence             00000                      0        001112234478999999999999999       899999999


Q ss_pred             CcEEEeEe
Q 037555          289 NTVRVFQV  296 (298)
Q Consensus       289 ~~i~iw~~  296 (298)
                      .+|.+=++
T Consensus       330 k~i~lgei  337 (338)
T KOG0265|consen  330 KTIYLGEI  337 (338)
T ss_pred             ceeEeecc
Confidence            99987544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-32  Score=194.67  Aligned_cols=237  Identities=18%  Similarity=0.255  Sum_probs=201.7

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      +.+..+..+.++|..+.|+ -.+....+.      ++|.     .++++.+|..+|..++.+.|...|++|     +.|.
T Consensus         8 kr~~~l~~~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~-----GgDk   81 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC-----GGDK   81 (307)
T ss_pred             hhceeecccccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC-----CCCc
Confidence            3467788999999999998 555554443      6886     478999999999999999999999999     4599


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF  163 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (298)
                      .+.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||.+...     .++++.+......|.++...  
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-----~ePiQildea~D~V~Si~v~--  154 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-----FEPIQILDEAKDGVSSIDVA--  154 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC-----CCccchhhhhcCceeEEEec--
Confidence            99999999999999999999999999999999999999999999999998765     56788888888899999887  


Q ss_pred             CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555          164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA  243 (298)
Q Consensus       164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  243 (298)
                      +..|++|+.||++|.||++.++...   ..  ...+|+++.|++++     +..+.++.|+.|++.|-.++         
T Consensus       155 ~heIvaGS~DGtvRtydiR~G~l~s---Dy--~g~pit~vs~s~d~-----nc~La~~l~stlrLlDk~tG---------  215 (307)
T KOG0316|consen  155 EHEIVAGSVDGTVRTYDIRKGTLSS---DY--FGHPITSVSFSKDG-----NCSLASSLDSTLRLLDKETG---------  215 (307)
T ss_pred             ccEEEeeccCCcEEEEEeecceeeh---hh--cCCcceeEEecCCC-----CEEEEeeccceeeecccchh---------
Confidence            6789999999999999999987654   32  46789999999999     89999999999999999988         


Q ss_pred             CCCcceeeeeccCCcccceE--EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          244 PSTANIIIRFDPFACHVAAV--NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          +.+..   +.+|...=  ...+++...       ..+++|++||.|.+|||-
T Consensus       216 ----klL~s---YkGhkn~eykldc~l~qsd-------thV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  216 ----KLLKS---YKGHKNMEYKLDCCLNQSD-------THVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             ----HHHHH---hcccccceeeeeeeecccc-------eeEEeccCCceEEEEEec
Confidence                33333   55675543  345566555       799999999999999973

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-33  Score=200.73  Aligned_cols=249  Identities=22%  Similarity=0.349  Sum_probs=202.1

Q ss_pred             eeeeecCccccccc--CCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcC-CCCEEE
Q 037555            8 TVERHGNDGLDTLE--SVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDH-QGKLVA   72 (298)
Q Consensus         8 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~   72 (298)
                      .+|...++.+..+.  .-.+.+..+++++..+.+++++      ++|+      +++.++.|..+|.++.|++ ....++
T Consensus        42 ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   42 ILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             EEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEE
Confidence            33443444444443  2346678888886666665554      4663      5778899999999999998 455677


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      +++.     |++|++|+....+.+.++.+|...|...+|+| ..+++++++.|+++++||++.+.      +.+. +..|
T Consensus       122 tsSW-----D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------k~~~-i~ah  189 (311)
T KOG0277|consen  122 TSSW-----DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------KFMS-IEAH  189 (311)
T ss_pred             eecc-----CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------ceeE-EEec
Confidence            7765     99999999999999999999999999999999 67899999999999999998753      3333 7789


Q ss_pred             CCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          152 KRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       152 ~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      ..+|.++.|+. +.+.+++|+.|+.|+.||++..+..  +..+.+|.-.|+.+.|+|...    .+|++++.|=+++|||
T Consensus       190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~eL~gh~~AVRkvk~Sph~~----~lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFELNGHGLAVRKVKFSPHHA----SLLASASYDMTVRIWD  263 (311)
T ss_pred             cceeEeecccccCCcEEEecCCCceEEEEehhhcccc--ceeecCCceEEEEEecCcchh----hHhhhccccceEEecc
Confidence            99999999998 6789999999999999999987643  336678999999999999875    7999999999999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ...+.            .++..   ...|..-|..+.|++..+      .++|+++.|+.++||+
T Consensus       264 ~~~~d------------s~~e~---~~~HtEFv~g~Dws~~~~------~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  264 PERQD------------SAIET---VDHHTEFVCGLDWSLFDP------GQVASTGWDELLYVWN  307 (311)
T ss_pred             cccch------------hhhhh---hhccceEEeccccccccC------ceeeecccccceeeec
Confidence            97542            22222   446999999999998754      8999999999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-31  Score=194.59  Aligned_cols=258  Identities=18%  Similarity=0.255  Sum_probs=205.8

Q ss_pred             ccccCCCCCceeeeccCCCccccccc------CCC-----CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLW-----PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      ..+.||.-+++.+.++ ..++.+.+.      .+|     ..+.++.||++.|.|++.+-+.+.|++|+     .|.+++
T Consensus         4 i~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-----AD~t~k   77 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-----ADQTAK   77 (327)
T ss_pred             cccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-----ccceeE
Confidence            3567899999998888 667776665      344     35788999999999999999999999994     599999


Q ss_pred             EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-----CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-----DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      +||+++|+.+.++. ...+|..+.|+++|++++.+..     .+.|.++|++..........+...+..+...++.+-|.
T Consensus        78 LWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   78 LWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            99999999999888 6788999999999998887754     47899999986553332245566777788999999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      |.+.+|++|..||.|.+||.+++.....  ....|...|+.++++++.     .++++++.|.+-++||.++-.....+.
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~-----T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKELVD--SDEEHSSKINDLQFSRDR-----TYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCceeee--chhhhccccccccccCCc-----ceEEecccCccceeeeccceeeEEEee
Confidence            9999999999999999999999865442  445688899999999999     899999999999999998654322211


Q ss_pred             C-------------------CCCCccee--------------------eeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          242 P-------------------APSTANII--------------------IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       242 ~-------------------~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      -                   +.+...-+                    ..+...++|-++|++++|+|+|       ...
T Consensus       230 te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-------ksY  302 (327)
T KOG0643|consen  230 TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-------KSY  302 (327)
T ss_pred             ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-------ccc
Confidence            0                   00000000                    0122367899999999999999       799


Q ss_pred             EeeeCCCcEEEeEe
Q 037555          283 ASCGADNTVRVFQV  296 (298)
Q Consensus       283 ~s~~~d~~i~iw~~  296 (298)
                      ++|++||.||+.-+
T Consensus       303 sSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  303 SSGGEDGYVRLHHF  316 (327)
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999998654

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.1e-31  Score=218.96  Aligned_cols=207  Identities=18%  Similarity=0.251  Sum_probs=165.2

Q ss_pred             EEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCC-CEEEE
Q 037555           50 HKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDD-NLLLS  120 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~  120 (298)
                      ..+.+|.+.|++++|+| ++.+|++++     .|++|++||+.++       +++..+.+|...|.+++|+|++ ++|++
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence            35789999999999999 888999995     5999999999764       2456788999999999999975 69999


Q ss_pred             EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc-
Q 037555          121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS-  199 (298)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-  199 (298)
                      ++.|+.|++||+..       ......+..|...|.+++|+|++.+|++++.|+.|++||+++++.+.   .+..|... 
T Consensus       144 gs~DgtVrIWDl~t-------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~  213 (493)
T PTZ00421        144 AGADMVVNVWDVER-------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAK  213 (493)
T ss_pred             EeCCCEEEEEECCC-------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCc
Confidence            99999999999987       45567778899999999999999999999999999999999988766   45556544 


Q ss_pred             eEEEEEeeccccCCccEEEEee----cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          200 VTALSWVGLDRQKNHGFLAVGM----ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      +..+.|.+.+     ..+++++    .|+.|++||+++..            .+..... . .+...+....|++++   
T Consensus       214 ~~~~~w~~~~-----~~ivt~G~s~s~Dr~VklWDlr~~~------------~p~~~~~-~-d~~~~~~~~~~d~d~---  271 (493)
T PTZ00421        214 SQRCLWAKRK-----DLIITLGCSKSQQRQIMLWDTRKMA------------SPYSTVD-L-DQSSALFIPFFDEDT---  271 (493)
T ss_pred             ceEEEEcCCC-----CeEEEEecCCCCCCeEEEEeCCCCC------------CceeEec-c-CCCCceEEEEEcCCC---
Confidence            4567888876     4555543    47899999998652            1222111 1 123456667789998   


Q ss_pred             CCcceEEEeee-CCCcEEEeEec
Q 037555          276 NSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                          .+|++++ .|+.|++||+.
T Consensus       272 ----~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        272 ----NLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             ----CEEEEEEeCCCeEEEEEee
Confidence                7888877 59999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.7e-31  Score=215.20  Aligned_cols=207  Identities=19%  Similarity=0.321  Sum_probs=184.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      .++.+.-...+|..++|+..|..||.||.    .=|++.||+.++...+...++|...+++++++|||+++++|+.||.|
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence            56777777789999999999999999984    46799999999888888899999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEe
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWV  206 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~  206 (298)
                      +|||...       +-+..++..|...|+.+.|+..++.+++.+-||+|+.||+...+..+   ++. +.+....+++..
T Consensus       375 KvWn~~S-------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR---Tft~P~p~QfscvavD  444 (893)
T KOG0291|consen  375 KVWNTQS-------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR---TFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EEEeccC-------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee---eecCCCceeeeEEEEc
Confidence            9999987       67889999999999999999999999999999999999999888776   443 234456788888


Q ss_pred             eccccCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          207 GLDRQKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      |.|     .++.+|+.|. .|++|++.++             +.+..   +.+|.++|.+++|+|++       ..|+++
T Consensus       445 ~sG-----elV~AG~~d~F~IfvWS~qTG-------------qllDi---LsGHEgPVs~l~f~~~~-------~~LaS~  496 (893)
T KOG0291|consen  445 PSG-----ELVCAGAQDSFEIFVWSVQTG-------------QLLDI---LSGHEGPVSGLSFSPDG-------SLLASG  496 (893)
T ss_pred             CCC-----CEEEeeccceEEEEEEEeecC-------------eeeeh---hcCCCCcceeeEEcccc-------CeEEec
Confidence            888     7888888876 6999999998             44333   67999999999999999       899999


Q ss_pred             eCCCcEEEeEe
Q 037555          286 GADNTVRVFQV  296 (298)
Q Consensus       286 ~~d~~i~iw~~  296 (298)
                      +.|.+||+||+
T Consensus       497 SWDkTVRiW~i  507 (893)
T KOG0291|consen  497 SWDKTVRIWDI  507 (893)
T ss_pred             cccceEEEEEe
Confidence            99999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-32  Score=195.77  Aligned_cols=203  Identities=20%  Similarity=0.384  Sum_probs=172.6

Q ss_pred             CCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 037555           55 HGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        55 h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  131 (298)
                      -.+.+..++|+++. ..+++++     .||.+++||+. ...++..++.|...|.++.|++ ++..+++++.|++|++|+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~-----GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~  133 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAAS-----GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD  133 (311)
T ss_pred             cccceeEeeecCCCcceEEEEe-----cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence            45779999999864 4555553     49999999964 3467888999999999999998 566788889999999999


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ...       ..-+.++.+|...|....|+| ..+.|++++.|+.+++||++......   .++.|...+.++.|+....
T Consensus       134 ~~r-------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---~i~ah~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  134 PNR-------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---SIEAHNSEILCCDWSKYNH  203 (311)
T ss_pred             CCC-------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---EEEeccceeEeecccccCC
Confidence            987       455788999999999999999 56899999999999999998765444   4677889999999999875


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          .+++||+.|+.|+.||+++-+            .+   +.++.+|.-.|..++|||...      .+|++++.|-+
T Consensus       204 ----~vl~Tg~vd~~vr~wDir~~r------------~p---l~eL~gh~~AVRkvk~Sph~~------~lLaSasYDmT  258 (311)
T KOG0277|consen  204 ----NVLATGGVDNLVRGWDIRNLR------------TP---LFELNGHGLAVRKVKFSPHHA------SLLASASYDMT  258 (311)
T ss_pred             ----cEEEecCCCceEEEEehhhcc------------cc---ceeecCCceEEEEEecCcchh------hHhhhccccce
Confidence                899999999999999999764            22   333568999999999999874      79999999999


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      +||||..
T Consensus       259 ~riw~~~  265 (311)
T KOG0277|consen  259 VRIWDPE  265 (311)
T ss_pred             EEecccc
Confidence            9999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.1e-31  Score=202.67  Aligned_cols=253  Identities=19%  Similarity=0.337  Sum_probs=204.0

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCcc--ccccc------CCCC---------ceEEeccCCCceEEEEE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIED--QLAWH------TLWP---------ESHKLYGHGNELFSLCC   64 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~---------~~~~~~~h~~~v~~~~~   64 (298)
                      |++..+.+.. .|+....+.+|.+++..+....++..  .++++      .+|.         ..+.-.||.+.|-+++.
T Consensus       123 YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv  201 (423)
T KOG0313|consen  123 YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV  201 (423)
T ss_pred             cCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe
Confidence            6677777764 57889999999999986655544433  23333      3442         12333499999999999


Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCC-------------------------ceeeeccccccccEEEEEEcCCCCEEE
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGS-------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLL  119 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~  119 (298)
                      .++|..+++|+.     |.+|+||+..+                         +.++.++.+|..+|.++.|++ ...++
T Consensus       202 ~~sgtr~~SgS~-----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y  275 (423)
T KOG0313|consen  202 DSSGTRFCSGSW-----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY  275 (423)
T ss_pred             cCCCCeEEeecc-----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence            999999999965     89999999321                         234556789999999999997 66899


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS  199 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  199 (298)
                      +++.|.+|+.||+.++       .....+.. +..++++..+|..++|++|+.|..|++||.+++........+.+|+..
T Consensus       276 S~SwDHTIk~WDletg-------~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETG-------GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             eecccceEEEEEeecc-------cceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            9999999999999984       34444443 567899999999999999999999999999988766555678899999


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      |.++.|+|...    ..|++|+.|+++++||+++..            .++..   +.+|...|.++.|+..+       
T Consensus       348 Vssvkwsp~~~----~~~~S~S~D~t~klWDvRS~k------------~plyd---I~~h~DKvl~vdW~~~~-------  401 (423)
T KOG0313|consen  348 VSSVKWSPTNE----FQLVSGSYDNTVKLWDVRSTK------------APLYD---IAGHNDKVLSVDWNEGG-------  401 (423)
T ss_pred             hhheecCCCCc----eEEEEEecCCeEEEEEeccCC------------Cccee---eccCCceEEEEeccCCc-------
Confidence            99999999886    789999999999999999763            24444   55799999999998765       


Q ss_pred             eEEEeeeCCCcEEEeEe
Q 037555          280 MQLASCGADNTVRVFQV  296 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~  296 (298)
                       ++++||.|++|+|+.-
T Consensus       402 -~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  402 -LIVSGGADNKLRIFKG  417 (423)
T ss_pred             -eEEeccCcceEEEecc
Confidence             9999999999999863

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.3e-30  Score=215.20  Aligned_cols=209  Identities=15%  Similarity=0.205  Sum_probs=158.8

Q ss_pred             ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCce--------eeeccccccccEEEEEEcCCCCE-
Q 037555           48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWK--------AMGRLQSHSLTVTQIRFSHDDNL-  117 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-  117 (298)
                      .+..+.+|.++|.+++|+|+ +.+|++|+     .|+.|+|||+.++.        ++..+.+|...|.+++|+|++.. 
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i  140 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI  140 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence            56788999999999999996 78999995     59999999997542        23457789999999999998875 


Q ss_pred             EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC
Q 037555          118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                      |++++.|+.|++||++..       .....+. |...|.+++|+|++.+|++++.|+.|++||+++++.+.   .+.+|.
T Consensus       141 LaSgS~DgtIrIWDl~tg-------~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~  209 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENE-------KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHD  209 (568)
T ss_pred             EEEEeCCCeEEEEECCCC-------cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEeccc
Confidence            578999999999999873       3344443 56789999999999999999999999999999988776   566777


Q ss_pred             CceEEEEE-----eeccccCCccEEEEeecCC----cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555          198 SSVTALSW-----VGLDRQKNHGFLAVGMESG----VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW  268 (298)
Q Consensus       198 ~~v~~~~~-----~~~~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  268 (298)
                      +.+.+..+     ++++     .+|++++.|+    .|+|||++...            .++..+. +..+.+.+.....
T Consensus       210 g~~~s~~v~~~~fs~d~-----~~IlTtG~d~~~~R~VkLWDlr~~~------------~pl~~~~-ld~~~~~L~p~~D  271 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDD-----NYILSTGFSKNNMREMKLWDLKNTT------------SALVTMS-IDNASAPLIPHYD  271 (568)
T ss_pred             CCceeEEEEeeeEcCCC-----CEEEEEEcCCCCccEEEEEECCCCC------------CceEEEE-ecCCccceEEeee
Confidence            66544433     3554     6788877664    79999998632            2332221 2223333333333


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+++       .++++|+.|+.|++|++.
T Consensus       272 ~~tg-------~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        272 ESTG-------LIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCCC-------CEEEEEECCCeEEEEEcc
Confidence            4445       789999999999999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-31  Score=188.12  Aligned_cols=204  Identities=15%  Similarity=0.217  Sum_probs=182.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..+.+..|+++|.++.|+-+|++.++++     .|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            4677889999999999999999999995     49999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .+||+.+       ++..+.+.+|...|+.++|+.+...+++|+-|.++++||.+.... .+++.+......|.++....
T Consensus        84 ~vwDV~T-------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~~  155 (307)
T KOG0316|consen   84 QVWDVNT-------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVAE  155 (307)
T ss_pred             EEEEccc-------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEecc
Confidence            9999998       788999999999999999999999999999999999999987543 34446767788899998877


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                             ..|++|+.||+++.||++.++             ....     -...+|++++|++++       +..+.++.
T Consensus       156 -------heIvaGS~DGtvRtydiR~G~-------------l~sD-----y~g~pit~vs~s~d~-------nc~La~~l  203 (307)
T KOG0316|consen  156 -------HEIVAGSVDGTVRTYDIRKGT-------------LSSD-----YFGHPITSVSFSKDG-------NCSLASSL  203 (307)
T ss_pred             -------cEEEeeccCCcEEEEEeecce-------------eehh-----hcCCcceeEEecCCC-------CEEEEeec
Confidence                   579999999999999999873             2222     245799999999999       89999999


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                      |++|++.|-
T Consensus       204 ~stlrLlDk  212 (307)
T KOG0316|consen  204 DSTLRLLDK  212 (307)
T ss_pred             cceeeeccc
Confidence            999999773

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.2e-30  Score=202.47  Aligned_cols=249  Identities=24%  Similarity=0.407  Sum_probs=208.7

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ++.++.++..+++....+..|...+..+.+.+. +..++..      .+|+     ....+..|...|.++.|++++.++
T Consensus        30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (289)
T cd00200          30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL  108 (289)
T ss_pred             CcEEEEEEeeCCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence            456677888888888888999999988888844 4444443      2342     456677899999999999998888


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++++     .++.|++|++.+++....+..|...+.+++|+|++.++++++.++.|++||++.       ......+..|
T Consensus       109 ~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~~~~~~~~~  176 (289)
T cd00200         109 SSSS-----RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-------GKCVATLTGH  176 (289)
T ss_pred             EEec-----CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-------cccceeEecC
Confidence            8884     489999999998888888888999999999999988888888899999999986       4456666788


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      ...+.++.|+|+++.+++++.|+.|++||++..+...   .+..+...+.++.|+|++     .++++++.++.|++|++
T Consensus       177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG---TLRGHENGVNSVAFSPDG-----YLLASGSEDGTIRVWDL  248 (289)
T ss_pred             ccccceEEECCCcCEEEEecCCCcEEEEECCCCceec---chhhcCCceEEEEEcCCC-----cEEEEEcCCCcEEEEEc
Confidence            8899999999999999999999999999999877665   555678899999999986     78888888999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      .+.             .....+   ..|...|.+++|+|++       .+|++++.|+.|++|+
T Consensus       249 ~~~-------------~~~~~~---~~~~~~i~~~~~~~~~-------~~l~~~~~d~~i~iw~  289 (289)
T cd00200         249 RTG-------------ECVQTL---SGHTNSVTSLAWSPDG-------KRLASGSADGTIRIWD  289 (289)
T ss_pred             CCc-------------eeEEEc---cccCCcEEEEEECCCC-------CEEEEecCCCeEEecC
Confidence            865             444443   3688899999999998       8999999999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.98  E-value=4.5e-31  Score=214.85  Aligned_cols=270  Identities=40%  Similarity=0.669  Sum_probs=214.9

Q ss_pred             cCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ  100 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~  100 (298)
                      +......++..+.||.++++....+||++++++||..+|+|++.+|+|+++|++++.+..+...|++|+..+...++.+.
T Consensus       490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~  569 (764)
T KOG1063|consen  490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE  569 (764)
T ss_pred             ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec
Confidence            33334556777789999999999999999999999999999999999999999999877778899999999988888899


Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555          101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      +|.-.|+.++|+||+++|++.++|+++.+|..........   .....+.|...|+++.|+|++.+|+++|.|.+|++|.
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~---~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF---RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh---hhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            9999999999999999999999999999999865433322   1334678999999999999999999999999999999


Q ss_pred             ccCC--cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555          181 VENK--SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC  258 (298)
Q Consensus       181 ~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      ....  +.+..+ ....+...|+.+++.|.........++.|.+.|.|.+|......+...    .........+....+
T Consensus       647 ~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~----~~~~~~~~~l~~~~~  721 (764)
T KOG1063|consen  647 EPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVT----VGTFNLDTRLCATIG  721 (764)
T ss_pred             ccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccc----ceeeeeccccccccC
Confidence            8877  444433 223478899999999976544456889999999999999653221111    011123334445667


Q ss_pred             ccceEEEEEeecCCCCC---CCcceEEEeeeCCCcEEEeEecC
Q 037555          259 HVAAVNRMAWKTHEKPK---NSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~---~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                      |...|+.+.|.|.....   ..+...|++|+.|..+|+++++.
T Consensus       722 ~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~~  764 (764)
T KOG1063|consen  722 PDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVDD  764 (764)
T ss_pred             hHHhhheeEeccccccccccccceeEEeeecccceeEEeeccC
Confidence            89999999999863211   11225679999999999998763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=9e-31  Score=211.08  Aligned_cols=247  Identities=17%  Similarity=0.209  Sum_probs=208.7

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      |++..+.++.++...+..++--.-+|....|- +....++.+           .....++.|..|.+-|.|++.+|..++
T Consensus        33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~  111 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY  111 (794)
T ss_pred             ecCeeEEEecccceeeeeeeecccchhhheee-eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence            67888899999999999999888888887777 444444444           123468899999999999999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ  148 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (298)
                      +.++     ++|-.|++||.+.. .+.++|.+|+..|.+++|.| |.+.+++++-|++|++|.+..       ..+..++
T Consensus       112 vLts-----SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-------~~~nfTl  179 (794)
T KOG0276|consen  112 VLTS-----SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-------PHPNFTL  179 (794)
T ss_pred             EEec-----CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-------CCCceee
Confidence            9999     56999999999754 56788999999999999999 778999999999999999987       5567889


Q ss_pred             eccCCceEEEEEccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          149 EAHKRIIWSCSWNPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       149 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      .+|...|+++++-+.+  .+|++|++|..|++||..+..+++   ++.+|...|..+.|+|.-     .++++|++||++
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~l-----piiisgsEDGTv  251 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPEL-----PIIISGSEDGTV  251 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---HhhcccccceEEEecCCC-----cEEEEecCCccE
Confidence            9999999999998744  699999999999999999999988   899999999999999988     699999999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                      +||+..+.+..             ..+   .-....|++++-.+.+       +.++.|...|.|.
T Consensus       252 riWhs~Ty~lE-------------~tL---n~gleRvW~I~~~k~~-------~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  252 RIWNSKTYKLE-------------KTL---NYGLERVWCIAAHKGD-------GKIAVGFDEGSVT  294 (794)
T ss_pred             EEecCcceehh-------------hhh---hcCCceEEEEeecCCC-------CeEEEeccCCcEE
Confidence            99998876322             222   2245788888887776       6677777666654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=5.3e-31  Score=204.74  Aligned_cols=253  Identities=21%  Similarity=0.317  Sum_probs=196.4

Q ss_pred             cCCCCCceeeeccCCCcccccccC------CC---------------CceEEeccCCCceEEEEEcCCCC-EEEeEeccC
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWHT------LW---------------PESHKLYGHGNELFSLCCDHQGK-LVASSCKAQ   78 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~   78 (298)
                      -.|++.|..+..-|.....+++..      +|               ++-.+|.||+.+-++++|++... .|+++    
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~----  196 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG----  196 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec----
Confidence            457777777766665555555431      11               12347889999899999998544 56666    


Q ss_pred             CCCceEEEEEEcCCce-------eeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           79 STAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                       +.|+.|.+||+....       +...+.+|+..|..++|++ +..+|++++.|+.+.|||.++. .    .++.....+
T Consensus       197 -~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~----~~~~~~~~a  270 (422)
T KOG0264|consen  197 -SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T----SKPSHSVKA  270 (422)
T ss_pred             -cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C----CCCcccccc
Confidence             469999999996432       2345789999999999999 5678999999999999999963 1    455677789


Q ss_pred             cCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          151 HKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       151 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      |.++|++++|+| ++..||+|+.|++|.+||+|+...  .+..+.+|...|.++.|+|...    .+|++++.|+.+.||
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~e----tvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNE----TVLASSGTDRRLNVW  344 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCC----ceeEecccCCcEEEE
Confidence            999999999999 667889999999999999998765  4458889999999999999875    899999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+..-...+....+  ...+...+....||...|..+.|+|+.+      ..|++++.|+.+.||++.
T Consensus       345 Dls~ig~eq~~eda--~dgppEllF~HgGH~~kV~DfsWnp~eP------W~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDA--EDGPPELLFIHGGHTAKVSDFSWNPNEP------WTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhh--ccCCcceeEEecCcccccccccCCCCCC------eEEEEecCCceEEEeecc
Confidence            99764332221111  1122222233678999999999999986      789999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.3e-29  Score=201.39  Aligned_cols=237  Identities=25%  Similarity=0.399  Sum_probs=199.3

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      +..+.+|.+.|.++.+.| .+..++.+      .+|+     ....+..|...+..+.|+|+++.|++++     .++.|
T Consensus         2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~~~i   75 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-----SDKTI   75 (289)
T ss_pred             chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-----CCCeE
Confidence            457789999999999995 45555554      2453     3466778999999999999999999994     48999


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH  165 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (298)
                      ++|++.+++.+..+..|...+.++.|+++++++++++.++.+.+||+..       ......+..|...+.+++|+|++.
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-------GKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-------cEEEEEeccCCCcEEEEEEcCcCC
Confidence            9999998888888888999999999999988888888899999999985       455666778889999999999988


Q ss_pred             EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                      ++++++.|+.|++||++..+...   .+..+...+.++.|+|++     ..+++++.++.|++||++..           
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~l~~~~~~~~i~i~d~~~~-----------  209 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDG-----EKLLSSSSDGTIKLWDLSTG-----------  209 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCc-----CEEEEecCCCcEEEEECCCC-----------
Confidence            88888889999999999877766   455677899999999988     68888888999999999865           


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                        .....   +..|...|.+++|+|++       .++++++.|+.|++|++.
T Consensus       210 --~~~~~---~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         210 --KCLGT---LRGHENGVNSVAFSPDG-------YLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             --ceecc---hhhcCCceEEEEEcCCC-------cEEEEEcCCCcEEEEEcC
Confidence              33333   33578899999999997       788888889999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.5e-30  Score=203.93  Aligned_cols=233  Identities=18%  Similarity=0.313  Sum_probs=189.5

Q ss_pred             ccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555           20 LESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE   89 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~   89 (298)
                      +....+.|..+.|+|.....++..     .++.     ..+++...++.|.++.|..||++||+|     ++.|.|+|+|
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG-----D~sG~V~vfD   96 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG-----DESGHVKVFD   96 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc-----CCcCcEEEec
Confidence            344456889999997555444333     1221     244456678899999999999999999     7799999999


Q ss_pred             cCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEE
Q 037555           90 VGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEF  167 (298)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  167 (298)
                      ..+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+       ......+.+|.+.|.+.+|+|. +..+
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-------a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-------AYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-------cEEEEEecCCcceeEeeccccCCCeEE
Confidence            87777788899999999999999954 5778889999999999997       4446688999999999999995 5689


Q ss_pred             EEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          168 ATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       168 ~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                      ++|+.||.|++||++... .+.   .+. |..+|.++.+-|.+     ..+++++ ...|+|||+.++.           
T Consensus       170 vtGsYDg~vrl~DtR~~~~~v~---eln-hg~pVe~vl~lpsg-----s~iasAg-Gn~vkVWDl~~G~-----------  228 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTSRVV---ELN-HGCPVESVLALPSG-----SLIASAG-GNSVKVWDLTTGG-----------  228 (487)
T ss_pred             EecCCCceEEEEEeccCCceeE---Eec-CCCceeeEEEcCCC-----CEEEEcC-CCeEEEEEecCCc-----------
Confidence            999999999999999874 333   554 89999999999998     6787776 4679999999763           


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       +.+..   +..|...|+|+++..++       ..|+++|-|+.+++||+
T Consensus       229 -qll~~---~~~H~KtVTcL~l~s~~-------~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  229 -QLLTS---MFNHNKTVTCLRLASDS-------TRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             -eehhh---hhcccceEEEEEeecCC-------ceEeecccccceEEEEc
Confidence             22222   33499999999999998       89999999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=2.8e-31  Score=207.74  Aligned_cols=222  Identities=18%  Similarity=0.305  Sum_probs=181.1

Q ss_pred             ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           48 ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      .+..+.||+..|+++.|.| .+.+|+++     +.|+.|+||++-. ++++++|.+|..+|.+++|+++|..+++++.|+
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~-----gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSG-----GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEec-----CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4688899999999999999 88889999     4599999999865 889999999999999999999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .|++||.++       +.+...+. ....++++.|+|++ +.|++|+.|+.|+.||+++++.++   .+..|-+.|..+.
T Consensus       281 ~lKlwDtET-------G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~  349 (503)
T KOG0282|consen  281 FLKLWDTET-------GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDIT  349 (503)
T ss_pred             eeeeecccc-------ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeE
Confidence            999999998       55566554 35677999999988 899999999999999999999887   6777889999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccc-----------cCCCCC--------Ccceeeee-----------c
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV-----------STPAPS--------TANIIIRF-----------D  254 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~--------~~~~~~~~-----------~  254 (298)
                      |-+.+     ..+++.++|+.++||+.+..-....           ....+.        -.+.+..+           .
T Consensus       350 F~~~g-----~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  350 FVDEG-----RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             EccCC-----ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence            99999     7999999999999999876421110           000010        00111111           1


Q ss_pred             cCCccc--ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+.+|.  +--..+.||||+       .+|++|+.||.+.+||.+
T Consensus       425 ~feGh~vaGys~~v~fSpDG-------~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDG-------RTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             hhcceeccCceeeEEEcCCC-------CeEEeecCCccEEEeech
Confidence            144554  335678999999       899999999999999964

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.8e-30  Score=211.67  Aligned_cols=257  Identities=25%  Similarity=0.366  Sum_probs=216.5

Q ss_pred             cccceeeeecCcccccccC-CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC--
Q 037555            4 ATRETVERHGNDGLDTLES-VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK--   69 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~--   69 (298)
                      ..++.+.-++|+.+..++. |..+|..+.|.|. +..++++      ++|+     +.+.|+||.+.|.++.|+|+-.  
T Consensus        84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen   84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             ceEEEEEcccchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence            3567888999999999998 9999999999954 4566665      5775     5789999999999999999755  


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--------
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--------  140 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------  140 (298)
                      .|++|     ..|+++++||+++... +..+..|.+.|+++.|.+|+..++++++|..+.+||+..-+....        
T Consensus       163 lL~sg-----~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E  237 (775)
T KOG0319|consen  163 LLASG-----ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE  237 (775)
T ss_pred             heeec-----CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence            46777     5699999999985544 788889999999999999999999999999999999853210000        


Q ss_pred             --------------------------------------------------------------------------------
Q 037555          141 --------------------------------------------------------------------------------  140 (298)
Q Consensus       141 --------------------------------------------------------------------------------  140 (298)
                                                                                                      
T Consensus       238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k  317 (775)
T KOG0319|consen  238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK  317 (775)
T ss_pred             eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 037555          141 --------------------------------------------------------------------------------  140 (298)
Q Consensus       141 --------------------------------------------------------------------------------  140 (298)
                                                                                                      
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence                                                                                            


Q ss_pred             ----------------------------------------ce----------eeeE----EeeccCCceEEEEEccCCCE
Q 037555          141 ----------------------------------------DY----------QLIA----RQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus       141 ----------------------------------------~~----------~~~~----~~~~~~~~v~~~~~~~~~~~  166 (298)
                                                              .+          ....    ....|...|++++.+|+..+
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL  477 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL  477 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence                                                    00          0011    22358888999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                      +++||.|.+.++|++++.....   .+.+|...|.++.|+|..     +.+++++.|++|+||.+.+.            
T Consensus       478 iAT~SqDktaKiW~le~~~l~~---vLsGH~RGvw~V~Fs~~d-----q~laT~SgD~TvKIW~is~f------------  537 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLRLLG---VLSGHTRGVWCVSFSKND-----QLLATCSGDKTVKIWSISTF------------  537 (775)
T ss_pred             EEecccccceeeecccCceEEE---EeeCCccceEEEEecccc-----ceeEeccCCceEEEEEeccc------------
Confidence            9999999999999999776666   888999999999999998     79999999999999999988            


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       .++..   +.+|...|..+.|-.++       ..|++|+.||.|++|+++
T Consensus       538 -SClkT---~eGH~~aVlra~F~~~~-------~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  538 -SCLKT---FEGHTSAVLRASFIRNG-------KQLISAGADGLIKLWNIK  577 (775)
T ss_pred             -eeeee---ecCccceeEeeeeeeCC-------cEEEeccCCCcEEEEecc
Confidence             77777   55899999999999999       899999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.8e-30  Score=213.46  Aligned_cols=259  Identities=17%  Similarity=0.249  Sum_probs=215.2

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      .+.++.|+-+=|.++..+..|.++|..+.|.|. +..++++      +.|.     ++.++.||-+-|..+.|++.-..+
T Consensus        30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWI  108 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI  108 (1202)
T ss_pred             CceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceE
Confidence            467889999999999999999999999999954 4444444      4663     678889999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-------------
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG-------------  138 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------  138 (298)
                      +++     ++|.+|+||+.++++++..+++|...|.|.+|+|...+++++|-|-+|++||+..-...             
T Consensus       109 lSA-----SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~  183 (1202)
T KOG0292|consen  109 LSA-----SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG  183 (1202)
T ss_pred             EEc-----cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence            999     45999999999999999999999999999999999999999999999999998632111             


Q ss_pred             ---------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          139 ---------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       139 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                               ..+.-....+.+|...|+-++|+|.-..|++|++|..|++|.+...+. .++.+..+|...|.++-|+|..
T Consensus       184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q  262 (1202)
T KOG0292|consen  184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQ  262 (1202)
T ss_pred             cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCcc
Confidence                     002334467789999999999999999999999999999999976554 3444677899999999999987


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                           +++++.++|+.|+|||+...             ..+..+.   ......+.++-+|..       +++++|- |+
T Consensus       263 -----~lIlSnsEDksirVwDm~kR-------------t~v~tfr---rendRFW~laahP~l-------NLfAAgH-Ds  313 (1202)
T KOG0292|consen  263 -----DLILSNSEDKSIRVWDMTKR-------------TSVQTFR---RENDRFWILAAHPEL-------NLFAAGH-DS  313 (1202)
T ss_pred             -----ceeEecCCCccEEEEecccc-------------cceeeee---ccCCeEEEEEecCCc-------ceeeeec-CC
Confidence                 79999999999999999876             4455543   356778889999988       6666555 55


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      -+.+|.+.
T Consensus       314 Gm~VFkle  321 (1202)
T KOG0292|consen  314 GMIVFKLE  321 (1202)
T ss_pred             ceEEEEEc
Confidence            56666653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.7e-30  Score=195.36  Aligned_cols=239  Identities=20%  Similarity=0.307  Sum_probs=188.2

Q ss_pred             CCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCC---CCEEEeEeccCCCCceEEEEE
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQ---GKLVASSCKAQSTAAAEIWLW   88 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~~~d~~i~vw   88 (298)
                      .|++-|..+...   ++.+.++      ++|+    ..+.+.||.++|.+++|.-.   ...|++++     .|.++++|
T Consensus       103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-----~Dqtl~Lw  174 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-----MDQTLRLW  174 (423)
T ss_pred             cchhhhhhhccc---CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec-----CCceEEEE
Confidence            344555444333   3444444      4664    57889999999998888432   33588884     58999999


Q ss_pred             EcCCceee----eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC------------------ccceeeeE
Q 037555           89 EVGSWKAM----GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG------------------EIDYQLIA  146 (298)
Q Consensus        89 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------~~~~~~~~  146 (298)
                      ..+.++..    ...++|...|-++...+++..+++|+.|..|.+|+.......                  .....++.
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            98876543    334699999999999999999999999999999993321100                  01245677


Q ss_pred             EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          147 RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      .+.+|..+|.++.|++ ...+++++.|.+|+.||+.++....   ++. .+....++..+|..     .+|++|+.|..|
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~---~~~-~~ksl~~i~~~~~~-----~Ll~~gssdr~i  324 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS---TLT-TNKSLNCISYSPLS-----KLLASGSSDRHI  324 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee---eee-cCcceeEeeccccc-----ceeeecCCCCce
Confidence            8889999999999997 7789999999999999999998876   444 46778999999987     799999999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++||.+++.            ..+. ...+.+|...|.++.|+|...      .+|++++.|+++++||++
T Consensus       325 rl~DPR~~~------------gs~v-~~s~~gH~nwVssvkwsp~~~------~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  325 RLWDPRTGD------------GSVV-SQSLIGHKNWVSSVKWSPTNE------FQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             eecCCCCCC------------Ccee-EEeeecchhhhhheecCCCCc------eEEEEEecCCeEEEEEec
Confidence            999999873            1222 223678999999999999875      899999999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=4.3e-29  Score=197.56  Aligned_cols=263  Identities=15%  Similarity=0.257  Sum_probs=210.0

Q ss_pred             ecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555           12 HGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLVASSCKAQ   78 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~   78 (298)
                      ++.........|...++...++ |.+..++++      ++|+.       ...++.-.++|..++|+.+++++++.+..+
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkyS-PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr  125 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYS-PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR  125 (603)
T ss_pred             CCccceeeeccccceeEEEEeC-CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence            3444566678898888988888 557788887      67753       234555678999999999999999887622


Q ss_pred             CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                       ..-|.+.+||  +|..+..+.+|...|.++.|-|... .+++|+.|++|.+|+-..       .+....+..|..-|.+
T Consensus       126 -erfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-------FKFk~s~r~HskFV~~  195 (603)
T KOG0318|consen  126 -ERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-------FKFKSSFREHSKFVNC  195 (603)
T ss_pred             -cceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-------eeeeecccccccceee
Confidence             1234555555  6778889999999999999999665 799999999999998664       6777788899999999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555          158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN  237 (298)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  237 (298)
                      +.|+|||.+|++++.||++.+||-.+++.+..+..-.+|++.|.+++|+|++     ..+++++.|.+++|||+.+....
T Consensus       196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-----~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----TQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----ceEEEecCCceEEEEEeeccceE
Confidence            9999999999999999999999999999998666566899999999999999     79999999999999999876543


Q ss_pred             cccCCCCC----Ccceee-----------------------eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          238 DVSTPAPS----TANIII-----------------------RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       238 ~~~~~~~~----~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                      ........    +..++.                       .+....+|...|+++..+|++       .+|++|+.||.
T Consensus       271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-------~~i~SgsyDG~  343 (603)
T KOG0318|consen  271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-------KTIYSGSYDGH  343 (603)
T ss_pred             EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-------CEEEeeccCce
Confidence            32211110    000000                       122256899999999999999       89999999999


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      |.-|+..
T Consensus       344 I~~W~~~  350 (603)
T KOG0318|consen  344 INSWDSG  350 (603)
T ss_pred             EEEEecC
Confidence            9999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=4.1e-31  Score=199.45  Aligned_cols=247  Identities=19%  Similarity=0.348  Sum_probs=205.6

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~   72 (298)
                      -.++.++..+-.++..+.||.+.|.++.+.   ...++++      ++|+     ++.++.+|...|..+.|+.  .+++
T Consensus       217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mv  291 (499)
T KOG0281|consen  217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMV  291 (499)
T ss_pred             CceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEE
Confidence            456778888889999999999999999887   3355544      5664     5788899999999999974  5899


Q ss_pred             eEeccCCCCceEEEEEEcCCcee---eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKA---MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      ++++     |..+.+||+.+...   ...+.+|...|..+.|+  .+++++++.|.+|++|+..+       ...++.+.
T Consensus       292 tcSk-----DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-------~efvRtl~  357 (499)
T KOG0281|consen  292 TCSK-----DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-------CEFVRTLN  357 (499)
T ss_pred             EecC-----CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-------eeeehhhh
Confidence            9965     89999999976543   34577999999999994  56999999999999999998       78899999


Q ss_pred             ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      +|...|.|+.+.  ++++++|+.|.+|++||+..+.++.   .+++|+.-|.++.|..       +.+++|..||+|+||
T Consensus       358 gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd~-------krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  358 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDN-------KRIVSGAYDGKIKVW  425 (499)
T ss_pred             cccccceehhcc--CeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeecC-------ceeeeccccceEEEE
Confidence            999999888775  8999999999999999999999988   8889999999999987       679999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+.....+..    +...-++..   +..|.+.|..+.|..         ..+++++.|.+|-|||+.
T Consensus       426 dl~aaldpra----~~~~~Cl~~---lv~hsgRVFrLQFD~---------fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  426 DLQAALDPRA----PASTLCLRT---LVEHSGRVFRLQFDE---------FQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ecccccCCcc----cccchHHHh---hhhccceeEEEeecc---------eEEEeccCCCeEEEEEcC
Confidence            9987643321    011122222   445899999999954         789999999999999973

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=5.9e-29  Score=222.73  Aligned_cols=238  Identities=20%  Similarity=0.259  Sum_probs=189.5

Q ss_pred             cccCCCCCceeeeccCCCccccccc------CCCCc-------------eEEeccCCCceEEEEEcC-CCCEEEeEeccC
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------------SHKLYGHGNELFSLCCDH-QGKLVASSCKAQ   78 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------------~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~   78 (298)
                      .+..|.+.|.++.|. |.+..++++      ++|+.             ...+ .+...|.+++|++ ++.+|++++   
T Consensus       478 ~~~~~~~~V~~i~fs-~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~---  552 (793)
T PLN00181        478 DLLNSSNLVCAIGFD-RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN---  552 (793)
T ss_pred             cccCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEe---
Confidence            455689999999999 566677665      46642             1122 2346799999987 478899995   


Q ss_pred             CCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                        .|+.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++.       ...+..+.. ...+.+
T Consensus       553 --~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-------~~~~~~~~~-~~~v~~  622 (793)
T PLN00181        553 --FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-------GVSIGTIKT-KANICC  622 (793)
T ss_pred             --CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-------CcEEEEEec-CCCeEE
Confidence              599999999999999999999999999999997 788999999999999999986       344555554 367899


Q ss_pred             EEEc-cCCCEEEEeeCCCeEEEEEccCCcc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          158 CSWN-PFGHEFATGSRDKTVKIWAVENKSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       158 ~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +.|+ +++.+|++|+.||.|++||++.... ..   .+.+|...|.++.|.+ +     .+|++++.|+.|++||++...
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~~-~-----~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFVD-S-----STLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccce---EecCCCCCEEEEEEeC-C-----CEEEEEECCCEEEEEeCCCCc
Confidence            9995 4789999999999999999987652 33   5567899999999974 4     689999999999999997531


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ...       ....+..   +.+|...+..++|+|++       .+|++|+.|+.|++|+..
T Consensus       694 ~~~-------~~~~l~~---~~gh~~~i~~v~~s~~~-------~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        694 SGI-------NETPLHS---FMGHTNVKNFVGLSVSD-------GYIATGSETNEVFVYHKA  738 (793)
T ss_pred             ccc-------CCcceEE---EcCCCCCeeEEEEcCCC-------CEEEEEeCCCEEEEEECC
Confidence            100       0123333   55799999999999998       899999999999999853

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-29  Score=186.61  Aligned_cols=232  Identities=20%  Similarity=0.276  Sum_probs=180.2

Q ss_pred             CceeeeccCCCcccccccCCC--CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc
Q 037555           26 AVPAVFTEPPIEDQLAWHTLW--PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS  103 (298)
Q Consensus        26 ~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~  103 (298)
                      .+.++...|+. +.......|  .+...+..|.++|++++.+  ++++|+|+.     |-+|+|||+.+...+..+-.|.
T Consensus        12 ~i~Gf~l~~~~-~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGss-----DetI~IYDm~k~~qlg~ll~Ha   83 (362)
T KOG0294|consen   12 VILGFKLDPEP-KGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSS-----DETIHIYDMRKRKQLGILLSHA   83 (362)
T ss_pred             EEEEEEeccCc-cccccccceeeeccccccccccceeEEEec--ceeEeccCC-----CCcEEEEeccchhhhcceeccc
Confidence            34555555544 333333333  2356677899999999995  889999954     8899999999998888888899


Q ss_pred             ccEEEEEEcCCCC--EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555          104 LTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV  181 (298)
Q Consensus       104 ~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  181 (298)
                      +.|+++.|.++-.  .|++|+.||.|.+|+...       +..+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+
T Consensus        84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             cceEEEEecCCcchhheeeecCCCcEEEEEcCC-------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence            9999999998665  899999999999999987       8999999999999999999999999999999999999999


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccc----------------------------------cCCccEEEEeecCCcEE
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDR----------------------------------QKNHGFLAVGMESGVIE  227 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------~~~~~~l~~g~~dg~i~  227 (298)
                      -.++....+ .+   ....+.+.|+|.|.                                  ..++..|++|.+|+.|.
T Consensus       157 V~Gr~a~v~-~L---~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  157 VRGRVAFVL-NL---KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWIS  232 (362)
T ss_pred             hcCccceee-cc---CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEE
Confidence            887764422 22   22233466666654                                  11235777788888888


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +||....             .+...   +.+|..+|.++.+--+.     ++.+|+|+|.||.|++||++
T Consensus       233 ~~D~ds~-------------~~~~~---~~AH~~RVK~i~~~~~~-----~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  233 LKDTDSD-------------TPLTE---FLAHENRVKDIASYTNP-----EHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             EeccCCC-------------cccee---eecchhheeeeEEEecC-----CceEEEEeccCceEEEEEcc
Confidence            8887654             33333   56899999999864332     22899999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.6e-30  Score=192.37  Aligned_cols=213  Identities=20%  Similarity=0.311  Sum_probs=178.1

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------c------eeeeccccccccEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------W------KAMGRLQSHSLTVTQI  109 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------~------~~~~~~~~~~~~v~~~  109 (298)
                      +-..+..|+.++.+.+|+|||.++|+|+     .|..|+|.|++.            +      -.++++..|...|+++
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            4566788999999999999999999994     589999999862            1      2346677899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee
Q 037555          110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  189 (298)
                      .|+|...+|++++.|++|++||+.....    .+..+. .....+|.++.|+|.|.+|++|..-..+++||+.+.++...
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~sa----KrA~K~-~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSA----KRAFKV-FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHH----HHHHHH-hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            9999999999999999999999986432    111122 22356899999999999999999999999999999877654


Q ss_pred             eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEe
Q 037555          190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAW  268 (298)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  268 (298)
                      -..-..|...|+++.+++.+     .+.++|+.||.|++||--++             +|+..+..  +|. ..|.+..|
T Consensus       254 anPd~qht~ai~~V~Ys~t~-----~lYvTaSkDG~IklwDGVS~-------------rCv~t~~~--AH~gsevcSa~F  313 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTG-----SLYVTASKDGAIKLWDGVSN-------------RCVRTIGN--AHGGSEVCSAVF  313 (430)
T ss_pred             cCcccccccceeEEEecCCc-----cEEEEeccCCcEEeeccccH-------------HHHHHHHh--hcCCceeeeEEE
Confidence            43445688999999999999     79999999999999998877             66666653  454 57999999


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..++       .++++.|.|..+++|++.
T Consensus       314 tkn~-------kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  314 TKNG-------KYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ccCC-------eEEeecCCcceeeeeeec
Confidence            9999       899999999999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.3e-29  Score=203.80  Aligned_cols=215  Identities=20%  Similarity=0.354  Sum_probs=181.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +.+.|+++.|+++|.+||+|     ..+|.|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.|+.|..+|++
T Consensus       216 ~~~~vtSv~ws~~G~~LavG-----~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVG-----TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCCceEEEEECCCCCEEEEe-----ecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            38899999999999999999     5699999999999999999988 99999999997  6789999999999999999


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ....      ....+.+|...|..++|++++++||+|+.|+.+.|||.....++.   .+..|...|..++|+|...   
T Consensus       289 ~~~~------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~---~~~~H~aAVKA~awcP~q~---  356 (484)
T KOG0305|consen  289 ISQH------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF---TFTEHTAAVKALAWCPWQS---  356 (484)
T ss_pred             cchh------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE---EEeccceeeeEeeeCCCcc---
Confidence            8532      222478899999999999999999999999999999997777666   6778999999999999876   


Q ss_pred             ccEEEEee--cCCcEEEEEeeecccccccCCCCC---------------------------CcceeeeeccCCcccceEE
Q 037555          214 HGFLAVGM--ESGVIELWSISVNRTNDVSTPAPS---------------------------TANIIIRFDPFACHVAAVN  264 (298)
Q Consensus       214 ~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~v~  264 (298)
                       .+||+|+  .|+.|++||..++..........+                           ....+..+..+.+|...|.
T Consensus       357 -~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl  435 (484)
T KOG0305|consen  357 -GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVL  435 (484)
T ss_pred             -CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeE
Confidence             7999976  589999999987754332221111                           0111223344779999999


Q ss_pred             EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .++++||+       ..+++++.|.++++|++
T Consensus       436 ~la~SPdg-------~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  436 YLALSPDG-------ETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEEECCCC-------CEEEEecccCcEEeccc
Confidence            99999999       89999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=8.3e-30  Score=189.67  Aligned_cols=255  Identities=19%  Similarity=0.244  Sum_probs=204.0

Q ss_pred             cccccccCCCCCceeeeccCCCcccccccC-----------------------------CCCceEEeccCCCceEEEEEc
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWHT-----------------------------LWPESHKLYGHGNELFSLCCD   65 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~h~~~v~~~~~s   65 (298)
                      -+...+..|..++.+..|+ +++..++++.                             .-|.+++|..|.++|+++.|+
T Consensus       103 yEt~ylt~HK~~cR~aafs-~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFS-PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             cceEEEeecccceeeeeeC-CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            3456678899999999999 6777766651                             114689999999999999999


Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (298)
                      |....|+++++     |++|+++|+......   +.|+ ...+|.++.|+|.|.++++|....++++||+.+.       
T Consensus       182 Pre~ILiS~sr-----D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-------  248 (430)
T KOG0640|consen  182 PRETILISGSR-----DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-------  248 (430)
T ss_pred             chhheEEeccC-----CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccce-------
Confidence            99999999965     999999999754332   2333 5678999999999999999999999999999983       


Q ss_pred             eeeE---EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555          143 QLIA---RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV  219 (298)
Q Consensus       143 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  219 (298)
                      ++..   .-..|.+.|+++.+++.+++.++++.||.|++||--+.+++..+..-+ ....|.+..|..++     .++++
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~-----kyiLs  322 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNG-----KYILS  322 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCC-----eEEee
Confidence            3222   224588899999999999999999999999999999888887443332 34679999999998     89999


Q ss_pred             eecCCcEEEEEeeecccccccCCCCCCccee------------------------eeec---------cCCcccceEEEE
Q 037555          220 GMESGVIELWSISVNRTNDVSTPAPSTANII------------------------IRFD---------PFACHVAAVNRM  266 (298)
Q Consensus       220 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------------------~~~~---------~~~~~~~~v~~~  266 (298)
                      .+.|..+++|.+.+++....+++........                        ..+.         -..+|.+.+..+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999999999999988776666543211100                        0000         024799999999


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .-+|.+       .-++||+.|-.+|+|--
T Consensus       403 ~HSP~~-------p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  403 VHSPVE-------PAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EeCCCC-------Cceeeecccceeeeeee
Confidence            999999       79999999999999953

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=211.12  Aligned_cols=209  Identities=18%  Similarity=0.306  Sum_probs=166.4

Q ss_pred             EEec-cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------------------------------
Q 037555           50 HKLY-GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------------------------------   92 (298)
Q Consensus        50 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------------------------------   92 (298)
                      +.+. .|.+.|.++.||+||++||+|     ++|+.|+||.+..                                    
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsa-----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASA-----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS  334 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeec-----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence            4445 899999999999999999999     5699999998743                                    


Q ss_pred             ------------------------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555           93 ------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ  148 (298)
Q Consensus        93 ------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (298)
                                              .+++..|.+|.+.|.++.|+.+ ++|++++.|.+|++|++..       ..+++.+
T Consensus       335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-------~~CL~~F  406 (712)
T KOG0283|consen  335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-------KECLKVF  406 (712)
T ss_pred             cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-------cceeeEE
Confidence                                    1234456789999999999965 5999999999999999986       4556554


Q ss_pred             eccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          149 EAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       149 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                       .|...|+|++|+| |.++|++|+-||+||||++...+...    ......-|++++|.|+|     +..+.|+.+|..+
T Consensus       407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdG-----k~avIGt~~G~C~  476 (712)
T KOG0283|consen  407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDG-----KGAVIGTFNGYCR  476 (712)
T ss_pred             -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCC-----ceEEEEEeccEEE
Confidence             5999999999999 88999999999999999998766543    33456889999999999     8999999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +|+....+....        ..+..-. .-..|. .|+.+.|.|..+      ..++..+.|..|||+|+
T Consensus       477 fY~t~~lk~~~~--------~~I~~~~~Kk~~~~-rITG~Q~~p~~~------~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  477 FYDTEGLKLVSD--------FHIRLHNKKKKQGK-RITGLQFFPGDP------DEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             EEEccCCeEEEe--------eeEeeccCccccCc-eeeeeEecCCCC------CeEEEecCCCceEEEec
Confidence            999986532211        1110000 011133 899999998763      46777788999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-28  Score=219.82  Aligned_cols=245  Identities=12%  Similarity=0.246  Sum_probs=188.4

Q ss_pred             CCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcC
Q 037555           24 PDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVG   91 (298)
Q Consensus        24 ~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~   91 (298)
                      ...+..+.+.++....++++      ++|+     .+..+.+|.+.|++++|+| ++.+|++|+     .|+.|++||+.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-----~Dg~v~iWd~~  606 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-----DDGSVKLWSIN  606 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-----CCCEEEEEECC
Confidence            34677788886666666655      4664     4677889999999999997 788999995     59999999999


Q ss_pred             CceeeeccccccccEEEEEEc-CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe
Q 037555           92 SWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG  170 (298)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (298)
                      +++.+..+..+ ..|.++.|+ +++.+|++|+.||.|++||++...      .....+.+|...|.++.|. ++.+|+++
T Consensus       607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------~~~~~~~~h~~~V~~v~f~-~~~~lvs~  678 (793)
T PLN00181        607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------LPLCTMIGHSKTVSYVRFV-DSSTLVSS  678 (793)
T ss_pred             CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC------ccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence            88888777744 678999995 478999999999999999998632      2345667899999999997 67899999


Q ss_pred             eCCCeEEEEEccCCc---ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555          171 SRDKTVKIWAVENKS---SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA  247 (298)
Q Consensus       171 ~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  247 (298)
                      +.|+.|++||++...   ....+..+.+|...+..++|+|++     .+|++|+.|+.|++|+...............  
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~--  751 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-----GYIATGSETNEVFVYHKAFPMPVLSYKFKTI--  751 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-----CEEEEEeCCCEEEEEECCCCCceEEEecccC--
Confidence            999999999997532   112233677888999999999988     7999999999999999764421110000000  


Q ss_pred             ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .....+. ...|...|.+++|+|++       ..|++++.||.|+||++
T Consensus       752 ~~~~~~~-~~~~~~~V~~v~ws~~~-------~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        752 DPVSGLE-VDDASQFISSVCWRGQS-------STLVAANSTGNIKILEM  792 (793)
T ss_pred             Ccccccc-cCCCCcEEEEEEEcCCC-------CeEEEecCCCcEEEEec
Confidence            0000011 23466789999999999       89999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=186.67  Aligned_cols=168  Identities=22%  Similarity=0.363  Sum_probs=150.7

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      -+.+|..|+++|.+++.+|+.+++++|     +.|..-++|++.+++....+.+|+..|+++.|+.+|.+|++|+.+|.|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTG-----GgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATG-----GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEec-----CCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            467889999999999999999999999     458899999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      +||+..++       .....+...-..+.-+.|+|.+..|++|+.||.+-+|.+.+....+   .+.+|+.++++-.|.|
T Consensus       131 ~v~~~stg-------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  131 LVFKVSTG-------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIP  200 (399)
T ss_pred             EEEEcccC-------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccC
Confidence            99999873       3344444455678889999999999999999999999999865555   7789999999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +|     +.++++..||+|++|+..++.
T Consensus       201 dG-----Kr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  201 DG-----KRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             CC-----ceEEEEecCceEEEEecCCCc
Confidence            99     899999999999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.2e-29  Score=195.75  Aligned_cols=215  Identities=17%  Similarity=0.336  Sum_probs=176.4

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----------eeeccccccccEEEEEEcCCC-CEEE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----------AMGRLQSHSLTVTQIRFSHDD-NLLL  119 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~  119 (298)
                      ....|.+.|+.+.+.|....++++.    ...+.|.|||..+..          +-..+.+|...-+++.|++.. -.++
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~----t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATK----TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEec----CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            3346999999999999777666543    458899999985421          122577898888899999954 4899


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccC--CcceeeeeecCCC
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVEN--KSSVKQILALPPF  196 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~  196 (298)
                      +++.|+.|++||+...........+...+.+|...|..++|++ +...|++++.|+.+.|||+|+  .+...   ..++|
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~---~~~ah  271 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH---SVKAH  271 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc---ccccc
Confidence            9999999999999876653333556778889999999999999 557899999999999999995  33333   66789


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  276 (298)
                      .+.+.|++|+|.+.    .+||+|+.|++|++||+|+-+            .   .+..+.+|...|..+.|+|+..   
T Consensus       272 ~~~vn~~~fnp~~~----~ilAT~S~D~tV~LwDlRnL~------------~---~lh~~e~H~dev~~V~WSPh~e---  329 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNE----FILATGSADKTVALWDLRNLN------------K---PLHTFEGHEDEVFQVEWSPHNE---  329 (422)
T ss_pred             CCceeEEEeCCCCC----ceEEeccCCCcEEEeechhcc------------c---CceeccCCCcceEEEEeCCCCC---
Confidence            99999999999874    899999999999999999653            2   3444778999999999999875   


Q ss_pred             CcceEEEeeeCCCcEEEeEec
Q 037555          277 SRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       277 ~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         ..|++++.|+.+.+||+.
T Consensus       330 ---tvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  330 ---TVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ---ceeEecccCCcEEEEecc
Confidence               899999999999999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=208.32  Aligned_cols=209  Identities=16%  Similarity=0.279  Sum_probs=166.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF  127 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  127 (298)
                      +..|.||.+.|..+.||.+ .+|++++     .|.+|++|++...+++..|. |...|+|++|+| |.++|++|+-||.+
T Consensus       362 ~~ef~GHt~DILDlSWSKn-~fLLSSS-----MDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  362 FCEFKGHTADILDLSWSKN-NFLLSSS-----MDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             hhhhhccchhheecccccC-CeeEecc-----ccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence            4556899999999999975 4777774     59999999999999999998 999999999999 88999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-----CCCCceEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-----PFNSSVTA  202 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~  202 (298)
                      +||++..       .+.+ ....-..-|++++|.|+|+..++|+.+|.+++|+.+..+.........     .....|+.
T Consensus       435 RiWsI~d-------~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG  506 (712)
T KOG0283|consen  435 RLWSISD-------KKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG  506 (712)
T ss_pred             EEeecCc-------CeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence            9999986       3333 333445889999999999999999999999999998876554321111     11237999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      +.|.|..+    ..+++.+.|..|+|||.+..             ..+..+..+.. ...-....|+.||       .+|
T Consensus       507 ~Q~~p~~~----~~vLVTSnDSrIRI~d~~~~-------------~lv~KfKG~~n-~~SQ~~Asfs~Dg-------k~I  561 (712)
T KOG0283|consen  507 LQFFPGDP----DEVLVTSNDSRIRIYDGRDK-------------DLVHKFKGFRN-TSSQISASFSSDG-------KHI  561 (712)
T ss_pred             eEecCCCC----CeEEEecCCCceEEEeccch-------------hhhhhhccccc-CCcceeeeEccCC-------CEE
Confidence            99999875    56777788999999999765             44444332221 2234567899999       899


Q ss_pred             EeeeCCCcEEEeEec
Q 037555          283 ASCGADNTVRVFQVN  297 (298)
Q Consensus       283 ~s~~~d~~i~iw~~~  297 (298)
                      +++++|..|++|++.
T Consensus       562 Vs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  562 VSASEDSWVYIWKND  576 (712)
T ss_pred             EEeecCceEEEEeCC
Confidence            999999999999963

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-28  Score=178.79  Aligned_cols=207  Identities=17%  Similarity=0.279  Sum_probs=178.0

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      .+.||..+++-+.++.+|.+|.++++     |....||-..+|+.+.++.+|.+.|.++..+.+.+.+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaK-----D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAK-----DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecC-----CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence            46799999999999999999999965     8899999998899999999999999999999999999999999999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccCCc----ceeeeeecCCCCCceE
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVENKS----SVKQILALPPFNSSVT  201 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~----~~~~~~~~~~~~~~v~  201 (298)
                      |+.+       ++.+..++ ...+|..+.|++++++++....     .+.|.++|++...    ...++..++.+.+.++
T Consensus        80 Dv~t-------Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit  151 (327)
T KOG0643|consen   80 DVET-------GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT  151 (327)
T ss_pred             EcCC-------CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence            9998       55666665 4688999999999998888764     4679999998433    1112335666778999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .+-|.|.+     ++|++|.+||.|.+||++++.            ..+..   -..|...|++|.++++.       .+
T Consensus       152 ~a~Wg~l~-----~~ii~Ghe~G~is~~da~~g~------------~~v~s---~~~h~~~Ind~q~s~d~-------T~  204 (327)
T KOG0643|consen  152 SALWGPLG-----ETIIAGHEDGSISIYDARTGK------------ELVDS---DEEHSSKINDLQFSRDR-------TY  204 (327)
T ss_pred             eeeecccC-----CEEEEecCCCcEEEEEcccCc------------eeeec---hhhhccccccccccCCc-------ce
Confidence            99999999     899999999999999999873            22222   34588999999999999       89


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      ++|++.|.+-++||+.
T Consensus       205 FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  205 FITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEecccCccceeeecc
Confidence            9999999999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.4e-28  Score=202.27  Aligned_cols=247  Identities=17%  Similarity=0.225  Sum_probs=207.0

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------C-----CceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------W-----PESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      +..++.|+.++.+++.++..-  -+.+..|- |....+..+..      +     ..+.+...|.+.|.+++.+||++.+
T Consensus       393 ~~SikiWn~~t~kciRTi~~~--y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  393 GESIKIWNRDTLKCIRTITCG--YILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             CCcEEEEEccCcceeEEeccc--cEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence            367888999999999999774  55666666 44444444421      1     1355667999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCce-------e-e-----eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWK-------A-M-----GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~-------~-~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      ++|+     .|.+|++||..--.       . +     .++. -+..|.|+.++||+++|+++--|.++++|-+++    
T Consensus       470 vT~s-----aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt----  539 (888)
T KOG0306|consen  470 VTGS-----ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT----  539 (888)
T ss_pred             EEec-----CCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc----
Confidence            9995     59999999974211       1 1     1122 467899999999999999999999999999998    


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                         .+....+-+|.-||.++..+||+..+++|+.|..|++|-+.-+.+-+   .+.+|+..|.++.|.|..     ..++
T Consensus       540 ---lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---S~fAHdDSvm~V~F~P~~-----~~FF  608 (888)
T KOG0306|consen  540 ---LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---SFFAHDDSVMSVQFLPKT-----HLFF  608 (888)
T ss_pred             ---eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh---hhhcccCceeEEEEcccc-----eeEE
Confidence               77788899999999999999999999999999999999999998887   777899999999999987     7999


Q ss_pred             EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +++.|+.|+-||-..-             ..+..   +.+|...|++++.+|+|       .+++++|.|.+||+|.-
T Consensus       609 t~gKD~kvKqWDg~kF-------------e~iq~---L~~H~~ev~cLav~~~G-------~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEKF-------------EEIQK---LDGHHSEVWCLAVSPNG-------SFVVSSSHDKSIRLWER  663 (888)
T ss_pred             EecCcceEEeechhhh-------------hhhee---eccchheeeeeEEcCCC-------CeEEeccCCceeEeeec
Confidence            9999999999998765             33333   66899999999999999       89999999999999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.7e-28  Score=207.97  Aligned_cols=216  Identities=22%  Similarity=0.432  Sum_probs=176.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------------ceeeeccccccccEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------------WKAMGRLQSHSLTVTQI  109 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~  109 (298)
                      .+.++..|.+.|+|+.|+|||++||+|     ++|+.|.||+...                  .+.+..+.+|...|..+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsG-----SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv  135 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASG-----SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV  135 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeec-----cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence            356677899999999999999999999     5699999999762                  23566788999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-
Q 037555          110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-  188 (298)
Q Consensus       110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-  188 (298)
                      +|+|++.++++++.|++|.+|+..+       ...+..+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+..... 
T Consensus       136 ~Wsp~~~~lvS~s~DnsViiwn~~t-------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  136 NWSPDDSLLVSVSLDNSVIIWNAKT-------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             ccCCCccEEEEecccceEEEEcccc-------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence            9999999999999999999999998       77889999999999999999999999999999999999965421111 


Q ss_pred             ------------------------------------------------eeeecCCCCCceEEEEEeeccccCC-------
Q 037555          189 ------------------------------------------------QILALPPFNSSVTALSWVGLDRQKN-------  213 (298)
Q Consensus       189 ------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~-------  213 (298)
                                                                      .-..+.+|..++.+++|+|.-...+       
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence                                                            1123457778888888888432111       


Q ss_pred             -c----cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          214 -H----GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       214 -~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                       .    ..+++|+.|+.|.||.....             +++..+..  -....|.+|+|+|||       ..|+.||.|
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~-------------RPl~vi~~--lf~~SI~DmsWspdG-------~~LfacS~D  346 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALP-------------RPLFVIHN--LFNKSIVDMSWSPDG-------FSLFACSLD  346 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCC-------------Cchhhhhh--hhcCceeeeeEcCCC-------CeEEEEecC
Confidence             1    17889999999999998654             34333322  245789999999999       899999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      |+|.+..++
T Consensus       347 GtV~~i~Fe  355 (942)
T KOG0973|consen  347 GTVALIHFE  355 (942)
T ss_pred             CeEEEEEcc
Confidence            999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=5.9e-28  Score=187.03  Aligned_cols=250  Identities=17%  Similarity=0.225  Sum_probs=202.1

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeE
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASS   74 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~   74 (298)
                      .-.++.+++..+..++||...|..+.+.+. .+.+.++      ++|.     +......|..+|+.+..+|.|.+|+++
T Consensus       243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA  321 (506)
T KOG0289|consen  243 AVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA  321 (506)
T ss_pred             eEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence            346778889999999999999999999844 3333333      3452     456677899999999999999999999


Q ss_pred             eccCCCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           75 CKAQSTAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        75 ~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +     .|+...+.|++++..+.....  ..-.+++.+|+|||.+|.+|..||.++|||+..       ...+..+.+|.
T Consensus       322 s-----~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-------~~~~a~Fpght  389 (506)
T KOG0289|consen  322 S-----NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-------QTNVAKFPGHT  389 (506)
T ss_pred             c-----CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-------ccccccCCCCC
Confidence            4     599999999999988766553  234589999999999999999999999999987       44677889999


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ++|..++|+.+|.+|+++++|+.|++||+|..+....+ .+. ....+.++.|.+.|     .+|+.++.|=.|++++-.
T Consensus       390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~-~l~-~~~~v~s~~fD~SG-----t~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI-QLD-EKKEVNSLSFDQSG-----TYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             CceeEEEeccCceEEEEEecCCeEEEEEehhhccccee-ecc-ccccceeEEEcCCC-----CeEEeecceeEEEEEecc
Confidence            99999999999999999999999999999988766644 233 23379999999999     799998766555555433


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +.           +|..+..   +..|.+..+.+.|....       .+++++|.|..++++.+
T Consensus       463 ~k-----------~W~~~~~---~~~~sg~st~v~Fg~~a-------q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  463 TK-----------SWTEIKE---LADHSGLSTGVRFGEHA-------QYLASTSMDAILRLYAL  505 (506)
T ss_pred             cc-----------cceeeeh---hhhcccccceeeecccc-------eEEeeccchhheEEeec
Confidence            32           2233333   45588889999999888       89999999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=6.3e-29  Score=186.29  Aligned_cols=236  Identities=16%  Similarity=0.263  Sum_probs=200.9

Q ss_pred             CCCCCceeeeccCCCcccccccC------CCCc-------------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWHT------LWPE-------------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~-------------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      +....+.+..|+ |+++.++++.      .|+.             ...|.-+.++|.|+.|+.|...||+|     ..|
T Consensus       211 g~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG-----sqD  284 (508)
T KOG0275|consen  211 GQKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG-----SQD  284 (508)
T ss_pred             ccccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc-----CcC
Confidence            444567788888 7788888773      4531             12344578999999999999999999     459


Q ss_pred             eEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           83 AEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      |.|++|.+++|++++.|. .|+..|+++.|+.|+..+++++.|.++++.-+..       ++.++.+++|...|+...|.
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-------GK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-------GKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-------chhHHHhcCccccccceEEc
Confidence            999999999999999997 8999999999999999999999999999999987       77889999999999999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      ++|..+++++.||+|++|+.++.+++..+... +...+|.++...|.++    ..++++....+|+|.++..        
T Consensus       358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnp----eh~iVCNrsntv~imn~qG--------  424 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNP----EHFIVCNRSNTVYIMNMQG--------  424 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCC----ceEEEEcCCCeEEEEeccc--------
Confidence            99999999999999999999999998854333 3567899999999876    7899999999999999864        


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                            +.++.+..-....+...+.+.+|.|       .++...++|+.++.|.+
T Consensus       425 ------QvVrsfsSGkREgGdFi~~~lSpkG-------ewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  425 ------QVVRSFSSGKREGGDFINAILSPKG-------EWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             ------eEEeeeccCCccCCceEEEEecCCC-------cEEEEEccCcEEEEEEe
Confidence                  5566665444455677788899999       89999999999998875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.5e-28  Score=202.42  Aligned_cols=242  Identities=21%  Similarity=0.317  Sum_probs=207.1

Q ss_pred             cccceeeeecCccccc-ccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            4 ATRETVERHGNDGLDT-LESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ..+..++..++..+.. +.+|.+.|.++.+.. .+..+.++      ++|+     +...+.+|.+.|.++...+  ..+
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~  304 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLL  304 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceE
Confidence            4456788899999888 999999999999873 55555555      5675     5889999999999999854  467


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++|+     .|.+|++|+++++..+..+.+|..+|.++..+  +.++++|+.|++|++||+.+       .+++..+.+|
T Consensus       305 ~sgs-----~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-------~~cl~sl~gH  370 (537)
T KOG0274|consen  305 VSGS-----RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-------GKCLKSLSGH  370 (537)
T ss_pred             eecc-----CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-------ceeeeeecCC
Confidence            7764     49999999999999999999999999999997  78999999999999999997       8899999999


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      ...|.++.+.+. +.+++|+.|+.|++||+++. +++.   .+..|..-+..+.+..       ++|++++.|+.|++||
T Consensus       371 ~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~~-------~~Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  371 TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLRD-------NFLVSSSADGTIKLWD  439 (537)
T ss_pred             cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hhcCCccccccccccc-------ceeEeccccccEEEee
Confidence            999999988755 89999999999999999998 7766   8888888887776655       6899999999999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..++             ++...+...  |...|..+++.  .       ..+++++.|+++++||++
T Consensus       440 ~~~~-------------~~~~~~~~~--~~~~v~~l~~~--~-------~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  440 AEEG-------------ECLRTLEGR--HVGGVSALALG--K-------EEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             cccC-------------ceeeeeccC--CcccEEEeecC--c-------ceEEEEecCCeeEEEecc
Confidence            9988             666665421  67888888887  2       588999999999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=187.02  Aligned_cols=219  Identities=19%  Similarity=0.252  Sum_probs=179.3

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      -.++|.|++-+|+|.+|+.|     +..+.|++|.+.+|..+..+.+|=..|+++.|+.||.+|++|+.||.|.+|.+..
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag-----~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAG-----TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cccceeeeecCCCceEEEee-----cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            45789999999999999998     5589999999999999999999999999999999999999999999999998754


Q ss_pred             CCCC--ccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          135 TGTG--EIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      --..  .....+...+..|.-+|+.+...+.  ..++++++.|.++++||+..+..+.   ++. .+..+.+++..|.+ 
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl---ti~-fp~si~av~lDpae-  229 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL---TIT-FPSSIKAVALDPAE-  229 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE---EEe-cCCcceeEEEcccc-
Confidence            2111  1125677888899999999988874  4689999999999999999998776   433 67889999999998 


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccc--c-CCCCCCcceeeeeccCCcccc--eEEEEEeecCCCCCCCcceEEEee
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDV--S-TPAPSTANIIIRFDPFACHVA--AVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                          ..+..|+.+|.|.+.++........  . ....   .....+..+.+|..  +|++++.+-|+       .+|++|
T Consensus       230 ----~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~---~~~t~~~~~~Gh~~~~~ITcLais~Dg-------tlLlSG  295 (476)
T KOG0646|consen  230 ----RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH---EENTQINVLVGHENESAITCLAISTDG-------TLLLSG  295 (476)
T ss_pred             ----cEEEecCCcceEEeeehhcCCcccccccccccc---cccceeeeeccccCCcceeEEEEecCc-------cEEEee
Confidence                7999999999999998875431110  0 0000   11122333668888  99999999999       899999


Q ss_pred             eCCCcEEEeEec
Q 037555          286 GADNTVRVFQVN  297 (298)
Q Consensus       286 ~~d~~i~iw~~~  297 (298)
                      +.||.++|||+.
T Consensus       296 d~dg~VcvWdi~  307 (476)
T KOG0646|consen  296 DEDGKVCVWDIY  307 (476)
T ss_pred             CCCCCEEEEecc
Confidence            999999999974

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.9e-28  Score=179.90  Aligned_cols=257  Identities=19%  Similarity=0.267  Sum_probs=212.9

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------------------------------
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------------------------   47 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------------------------   47 (298)
                      ...+.|..++|.|+....||.+.|.++.|.+ .+..++++      .+|.                              
T Consensus       170 hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~  248 (481)
T KOG0300|consen  170 HTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR  248 (481)
T ss_pred             cceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence            3457788999999999999999999999994 44444443      1221                              


Q ss_pred             ---------------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc
Q 037555           48 ---------------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS  112 (298)
Q Consensus        48 ---------------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~  112 (298)
                                     ++..|.+|...|.++.|-..|+.+++++.     |.+-.+||+++++.+..+.+|....+.+.-+
T Consensus       249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW-----DRTAnlwDVEtge~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW-----DRTANLWDVETGEVVNILTGHDSELTHCSTH  323 (481)
T ss_pred             ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec-----cccceeeeeccCceeccccCcchhccccccC
Confidence                           25678899999999999999999999977     8899999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555          113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  192 (298)
                      |..+++++++.|.+.++||++..      ...+..+.+|...|+++.|.-+ ..+++|++|.+|++||+++.+...  .+
T Consensus       324 ptQrLVvTsSrDtTFRLWDFRea------I~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl--AT  394 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREA------IQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL--AT  394 (481)
T ss_pred             CcceEEEEeccCceeEeccchhh------cceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc--ee
Confidence            99999999999999999999853      5667888999999999999964 468999999999999999876533  23


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      +. ..++++.++.+...     .+|+.-.++..|++||+...+....            .-....+|..-|.+++|..+.
T Consensus       395 IR-tdS~~NRvavs~g~-----~iIAiPhDNRqvRlfDlnG~RlaRl------------PrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  395 IR-TDSPANRVAVSKGH-----PIIAIPHDNRQVRLFDLNGNRLARL------------PRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             ee-cCCccceeEeecCC-----ceEEeccCCceEEEEecCCCccccC------------CcccccccceeeeeeeccccC
Confidence            33 57889999999877     6888888899999999986532211            111256899999999998776


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEecC
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                      +     -.-|++||.|..+.=|++++
T Consensus       457 p-----~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  457 P-----ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             c-----ccccccccccceeeeeEecc
Confidence            2     14689999999999999863

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=184.44  Aligned_cols=214  Identities=21%  Similarity=0.402  Sum_probs=186.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      .++.+.||++.|..++-......+.++     +.|.+-+||.++++.++.++.+|.+.|.+++|++.+.++++++.|++-
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtA-----SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTA-----SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeec-----ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence            456778999999999998877888888     459999999999999999999999999999999999999999999999


Q ss_pred             EEEEec----cCCC-----------------------------CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC
Q 037555          128 SVFAIQ----RTGT-----------------------------GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK  174 (298)
Q Consensus       128 ~iwd~~----~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (298)
                      +||...    .++.                             +.....++..+.+|...|.+..|-..++.+++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            999721    1110                             0002345677889999999999999999999999999


Q ss_pred             eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555          175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD  254 (298)
Q Consensus       175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
                      +-.+||+++++.+.   .+.+|....+.++-+|..     .++++.+.|.+.++||++               ..+..+.
T Consensus       295 TAnlwDVEtge~v~---~LtGHd~ELtHcstHptQ-----rLVvTsSrDtTFRLWDFR---------------eaI~sV~  351 (481)
T KOG0300|consen  295 TANLWDVETGEVVN---ILTGHDSELTHCSTHPTQ-----RLVVTSSRDTTFRLWDFR---------------EAIQSVA  351 (481)
T ss_pred             cceeeeeccCceec---cccCcchhccccccCCcc-----eEEEEeccCceeEeccch---------------hhcceee
Confidence            99999999999888   788999999999999988     799999999999999998               3444555


Q ss_pred             cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+.+|...|+++.|..+.        .+++++.|.+|++|||+
T Consensus       352 VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             eecccccceeEEEEecCC--------ceeecCCCceEEEeeec
Confidence            588999999999999986        79999999999999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.3e-26  Score=171.62  Aligned_cols=255  Identities=11%  Similarity=0.143  Sum_probs=199.6

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCC------------ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP------------ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      +..++.++..+|+.+.++..+...+..+.|.-+....+.+.+.++            .++.|.||...|.+++.+|-+..
T Consensus        35 dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~  114 (311)
T KOG1446|consen   35 DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT  114 (311)
T ss_pred             CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence            357889999999999999999999988888866666666665543            37888999999999999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      +++++     .|++|++||++..++...+.....  ..++|.|+|-++|++.....|++||++.-..++.  .......+
T Consensus       115 FlS~S-----~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF--~tf~i~~~  185 (311)
T KOG1446|consen  115 FLSSS-----LDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF--TTFSITDN  185 (311)
T ss_pred             EEecc-----cCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCc--eeEccCCC
Confidence            99995     499999999997777665553333  3588999999999998888999999998654432  11222224


Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      ...+.+.+.|+|+|++|+.++..+.+++.|.-++..+..+...+....-.-+.+|.|++     +++++|+.||+|.+|+
T Consensus       186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds-----~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  186 DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS-----KFVLSGSDDGTIHVWN  260 (311)
T ss_pred             CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC-----cEEEEecCCCcEEEEE
Confidence            46678999999999999999999999999999888777443333222233678899999     8999999999999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ++++             ..+..+..  .+..++.++.|+|..       .++++++  ..+-+|=
T Consensus       261 ~~tg-------------~~v~~~~~--~~~~~~~~~~fnP~~-------~mf~sa~--s~l~fw~  301 (311)
T KOG1446|consen  261 LETG-------------KKVAVLRG--PNGGPVSCVRFNPRY-------AMFVSAS--SNLVFWL  301 (311)
T ss_pred             cCCC-------------cEeeEecC--CCCCCccccccCCce-------eeeeecC--ceEEEEe
Confidence            9887             55555432  278889999999976       5666664  4577773

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.2e-27  Score=196.77  Aligned_cols=205  Identities=15%  Similarity=0.227  Sum_probs=154.9

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----------ceeee---ccccccccEEEEEEcC-CCCEEEEEe
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----------WKAMG---RLQSHSLTVTQIRFSH-DDNLLLSVS  122 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----------~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~  122 (298)
                      ..|.....++++..+++++     .+.....|+...          |+...   .+.+|.+.|.+++|+| ++++|++++
T Consensus        21 ~~i~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             eccccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence            4455555666655555552     245555555432          22211   3678999999999999 889999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      .|++|++||+...........++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++...   .+..|...|.
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---~l~~h~~~V~  172 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---VIKCHSDQIT  172 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---EEcCCCCceE
Confidence            999999999976422111124566788999999999999975 799999999999999999887665   6667889999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce-EEEEEeecCCCCCCCcce
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA-VNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~  280 (298)
                      +++|+|++     .+|++++.|+.|++||++++             ..+..+   .+|... +..+.|.+++       .
T Consensus       173 sla~spdG-----~lLatgs~Dg~IrIwD~rsg-------------~~v~tl---~~H~~~~~~~~~w~~~~-------~  224 (493)
T PTZ00421        173 SLEWNLDG-----SLLCTTSKDKKLNIIDPRDG-------------TIVSSV---EAHASAKSQRCLWAKRK-------D  224 (493)
T ss_pred             EEEEECCC-----CEEEEecCCCEEEEEECCCC-------------cEEEEE---ecCCCCcceEEEEcCCC-------C
Confidence            99999998     79999999999999999876             444443   356554 4567899887       5


Q ss_pred             EEEeee----CCCcEEEeEec
Q 037555          281 QLASCG----ADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~----~d~~i~iw~~~  297 (298)
                      .+++++    .|+.|++||++
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCC
Confidence            666654    47899999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=185.05  Aligned_cols=200  Identities=16%  Similarity=0.273  Sum_probs=176.2

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      -.++++...|....+.+|     +.|..+.++|..+++.+..+.+|...|+.+.++|+...+++++.|..|++|..... 
T Consensus       220 pgi~ald~~~s~~~ilTG-----G~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTG-----GEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-  293 (506)
T ss_pred             CCeeEEeecCCCCcceec-----CCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-
Confidence            468889988887889999     45889999999999999999999999999999999999999999999999998873 


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                            ........|..+|+.+..+|.+.||++++.|+...+.|++++..+..... ...+-.+++.+|+|+|     .+
T Consensus       294 ------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDg-----Li  361 (506)
T KOG0289|consen  294 ------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDG-----LI  361 (506)
T ss_pred             ------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCc-----eE
Confidence                  34556678999999999999999999999999999999999987763321 1234568999999999     79


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +.+|..|+.|+|||+.++             ..   ...+.+|.++|..++|+.+|       .+|++++.|+.|++|||
T Consensus       362 fgtgt~d~~vkiwdlks~-------------~~---~a~Fpght~~vk~i~FsENG-------Y~Lat~add~~V~lwDL  418 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQ-------------TN---VAKFPGHTGPVKAISFSENG-------YWLATAADDGSVKLWDL  418 (506)
T ss_pred             EeccCCCceEEEEEcCCc-------------cc---cccCCCCCCceeEEEeccCc-------eEEEEEecCCeEEEEEe
Confidence            999999999999999876             22   22377899999999999999       99999999999999999


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       419 R  419 (506)
T KOG0289|consen  419 R  419 (506)
T ss_pred             h
Confidence            7

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.2e-28  Score=175.85  Aligned_cols=210  Identities=20%  Similarity=0.337  Sum_probs=177.1

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcC-CCCEEEEEeCCCe
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSH-DDNLLLSVSRDRQ  126 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  126 (298)
                      +.+.+|...|.+++|+.+|..|++|+.     |+++.+|+++..+....  ..+|.+.|-.++|+| +..++++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~-----dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSF-----DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeeccc-----CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            456789999999999999999999955     89999999987755443  468999999999998 5678999999999


Q ss_pred             EEEEEeccCCCCcc------------------------------------------------------------------
Q 037555          127 FSVFAIQRTGTGEI------------------------------------------------------------------  140 (298)
Q Consensus       127 i~iwd~~~~~~~~~------------------------------------------------------------------  140 (298)
                      |++||++..+....                                                                  
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            99999987542111                                                                  


Q ss_pred             ---------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          141 ---------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       141 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                               ..+++..++.|.....|+.|+|+|++||+|+.|-.+.+||+...-+.+   .+..+.-+|+.+.|+.++  
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R---~isRldwpVRTlSFS~dg--  243 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER---CISRLDWPVRTLSFSHDG--  243 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe---eeccccCceEEEEeccCc--
Confidence                     345566778899999999999999999999999999999999877776   677788999999999999  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC---
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD---  288 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d---  288 (298)
                         ++|++|++|..|-|=+++++             ..+..+.    +.++...++|+|..       .+||-++.|   
T Consensus       244 ---~~lASaSEDh~IDIA~vetG-------------d~~~eI~----~~~~t~tVAWHPk~-------~LLAyA~ddk~~  296 (313)
T KOG1407|consen  244 ---RMLASASEDHFIDIAEVETG-------------DRVWEIP----CEGPTFTVAWHPKR-------PLLAYACDDKDG  296 (313)
T ss_pred             ---ceeeccCccceEEeEecccC-------------CeEEEee----ccCCceeEEecCCC-------ceeeEEecCCCC
Confidence               89999999999999999988             5555553    78899999999998       788877754   


Q ss_pred             ------CcEEEeEe
Q 037555          289 ------NTVRVFQV  296 (298)
Q Consensus       289 ------~~i~iw~~  296 (298)
                            |.+++|-+
T Consensus       297 d~~reag~vKiFG~  310 (313)
T KOG1407|consen  297 DSNREAGTVKIFGL  310 (313)
T ss_pred             ccccccceeEEecC
Confidence                  56777654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=5e-28  Score=184.34  Aligned_cols=214  Identities=18%  Similarity=0.364  Sum_probs=171.0

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----------------ceeeeccccccccEEEEEEcCC-C
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----------------WKAMGRLQSHSLTVTQIRFSHD-D  115 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~  115 (298)
                      ..|.+.++.+.-++-++-.++++.   .+.|.|+||++..                .+++.++.+|...=+.++|+|- .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~asw---se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASW---SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             cccccccceeeecccCCcceeeee---cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            368888888888887666666666   6789999999842                2456778889999999999992 2


Q ss_pred             CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555          116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      -.|++|..-+.|++|...++.-.    .-...+.+|...|-.++|+|. ...|++|+-||+|+|||+|.+.....+.. +
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             cccccCccccceEeeeeccCcee----ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence            35888888899999998874311    112345569999999999994 57899999999999999999855444433 7


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      .|++.|+-+.|+...     .+|++|++||.++|||++.-+..          +++..   +.-|..+|++|.|+|... 
T Consensus       300 Ah~sDVNVISWnr~~-----~lLasG~DdGt~~iwDLR~~~~~----------~pVA~---fk~Hk~pItsieW~p~e~-  360 (440)
T KOG0302|consen  300 AHNSDVNVISWNRRE-----PLLASGGDDGTLSIWDLRQFKSG----------QPVAT---FKYHKAPITSIEWHPHED-  360 (440)
T ss_pred             ccCCceeeEEccCCc-----ceeeecCCCceEEEEEhhhccCC----------Cccee---EEeccCCeeEEEeccccC-
Confidence            799999999999987     69999999999999999976321          33444   456999999999999874 


Q ss_pred             CCCcceEEEeeeCCCcEEEeEecC
Q 037555          275 KNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                           ..|+++|.|..|.||||.+
T Consensus       361 -----s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  361 -----SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             -----ceEEeccCCCcEEEEEeec
Confidence                 7889999999999999974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.1e-27  Score=185.08  Aligned_cols=247  Identities=18%  Similarity=0.291  Sum_probs=194.0

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------------------CCCCc----------eEEe-ccCCCceEEEEEcCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------------------TLWPE----------SHKL-YGHGNELFSLCCDHQ   67 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~----------~~~~-~~h~~~v~~~~~s~~   67 (298)
                      ...+..|.-.+.++++.|. .+...++                  .+|+.          .+.- ++|...|.+++.++|
T Consensus       135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            6777888888888888844 3333332                  12221          1111 388999999999999


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      |++||+|+     .|..|.||+.++.+.++.+.+|.+.|.+++|-...+.+++++.|+.+++|+++.       ...+.+
T Consensus       214 gkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-------~s~vet  281 (479)
T KOG0299|consen  214 GKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-------LSYVET  281 (479)
T ss_pred             CcEEEecC-----CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-------hHHHHH
Confidence            99999994     589999999999999999999999999999998888999999999999999997       667888


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      +.+|.+.|..+....-++.+-+|+.|+++++|++.....+    .+.++.+.+-|++|-.+.      .+++|+.+|.|.
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In~~------HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFINDE------HFVSGSDNGSIA  351 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEecccccee----eeeCCCCCeeeEEEeccc------ceeeccCCceEE
Confidence            8999999999988877787888889999999999554332    455678899999998874      899999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|++...+.......+.......   . ...+..+|++++..|..       .++++|+.+|.||+|.+.
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~---~-~~~~~~Witsla~i~~s-------dL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPEL---D-PVNGNFWITSLAVIPGS-------DLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             EeeecccCceeEeeccccccCCc---c-ccccccceeeeEecccC-------ceEEecCCCCceEEEEec
Confidence            99998764332211111000000   0 11234589999999998       899999999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=184.57  Aligned_cols=204  Identities=20%  Similarity=0.281  Sum_probs=178.2

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--------cccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--------LQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      +.+..+-|..|+|||++|++|+.     ||-|.+|+.-+|+..+.        |.-+..+|.|+.|+.|...+++|+.||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeeccc-----cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            56677899999999999999954     99999999988875433        344788999999999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .|++|.+++       +.+++.+. .|...|+++.|+.|+..+++++.|.++++.-++++++++   .+.+|.+.|+...
T Consensus       286 kIKvWri~t-------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~  355 (508)
T KOG0275|consen  286 KIKVWRIET-------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEAT  355 (508)
T ss_pred             cEEEEEEec-------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceE
Confidence            999999998       55666665 899999999999999999999999999999999999998   7889999999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |.++|     ..+++++.||+|++|+..+.             .|+..+.+. +...+|+++..-|.++      ..++.
T Consensus       356 ft~dG-----~~iisaSsDgtvkvW~~Ktt-------------eC~~Tfk~~-~~d~~vnsv~~~PKnp------eh~iV  410 (508)
T KOG0275|consen  356 FTDDG-----HHIISASSDGTVKVWHGKTT-------------ECLSTFKPL-GTDYPVNSVILLPKNP------EHFIV  410 (508)
T ss_pred             EcCCC-----CeEEEecCCccEEEecCcch-------------hhhhhccCC-CCcccceeEEEcCCCC------ceEEE
Confidence            99999     89999999999999999988             666666533 3567899988888775      78888


Q ss_pred             eeCCCcEEEeEec
Q 037555          285 CGADNTVRVFQVN  297 (298)
Q Consensus       285 ~~~d~~i~iw~~~  297 (298)
                      |...++|.|-+++
T Consensus       411 CNrsntv~imn~q  423 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQ  423 (508)
T ss_pred             EcCCCeEEEEecc
Confidence            8888888887654

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.9e-26  Score=192.78  Aligned_cols=232  Identities=11%  Similarity=0.171  Sum_probs=169.2

Q ss_pred             ceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------------eEEeccCCCceEEEEEcCC
Q 037555            7 ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------------SHKLYGHGNELFSLCCDHQ   67 (298)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------------~~~~~~h~~~v~~~~~s~~   67 (298)
                      +.++......+..+.+|.+.|..+.|.|.....++++      ++|+.             +..+.+|...|.+++|+|+
T Consensus        57 ~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~  136 (568)
T PTZ00420         57 RLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM  136 (568)
T ss_pred             EeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC
Confidence            3344444456778899999999999996556666665      46642             2357889999999999999


Q ss_pred             CCEE-EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           68 GKLV-ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        68 ~~~l-~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      +..+ ++++     .|+.|+|||+.+++.+..+. |...|.+++|+|+|++|++++.|+.|++||++.       ...+.
T Consensus       137 g~~iLaSgS-----~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-------g~~i~  203 (568)
T PTZ00420        137 NYYIMCSSG-----FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-------QEIAS  203 (568)
T ss_pred             CCeEEEEEe-----CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-------CcEEE
Confidence            8765 6774     49999999999888776665 667899999999999999999999999999987       55567


Q ss_pred             EeeccCCceEE-----EEEccCCCEEEEeeCCC----eEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          147 RQEAHKRIIWS-----CSWNPFGHEFATGSRDK----TVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       147 ~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                      .+..|.+.+..     ..|++++.+|++++.|+    .|++||++.. .++. ...+....+.+......+++     .+
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg-----~l  277 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTG-----LI  277 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCC-----CE
Confidence            77888775433     23457888999988764    7999999963 3333 21333222333222223334     78


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      +++|..|+.|++|++..+              .+..+.++. +..++.+++|.|..
T Consensus       278 ~lsGkGD~tIr~~e~~~~--------------~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSLG--------------SIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEECCCeEEEEEccCC--------------cEEeecccc-cCCCccceEEcccc
Confidence            999999999999999754              223333333 56778888888865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.1e-27  Score=182.82  Aligned_cols=242  Identities=15%  Similarity=0.168  Sum_probs=191.4

Q ss_pred             ceeeeecCcccccccCCCCCceeeeccCCCcccccccC------CCC-----ceEEeccCCCceEEEEEcCCCC-EEEeE
Q 037555            7 ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP-----ESHKLYGHGNELFSLCCDHQGK-LVASS   74 (298)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~h~~~v~~~~~s~~~~-~l~~~   74 (298)
                      +.+...+-.....+.-..+.|..+.|. .++..++.+.      +++     .++.+.+|+.+|..+.|+|.+. .|++|
T Consensus        51 qly~~~~~~~~k~~srFk~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   51 QLYSSVTRSVRKTFSRFKDVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             EEEecchhhhhhhHHhhccceeEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence            444555555566677777788888777 5666666652      222     2456789999999999999655 55555


Q ss_pred             eccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           75 CKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        75 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                           ++|+.+++||+.+......+.+|+..|.|.+|+| ++..+++|+.||.|++||.+...      ..+..+ .|..
T Consensus       130 -----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~el-nhg~  197 (487)
T KOG0310|consen  130 -----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVEL-NHGC  197 (487)
T ss_pred             -----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEe-cCCC
Confidence                 5699999999998877667899999999999999 45689999999999999999742      234443 5899


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +|..+.+-|.|..+++++. ..|++||+-++.....  ....|...|+|+++..++     ..|++|+-|+.|++||+.+
T Consensus       198 pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~--~~~~H~KtVTcL~l~s~~-----~rLlS~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT--SMFNHNKTVTCLRLASDS-----TRLLSGSLDRHVKVFDTTN  269 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh--hhhcccceEEEEEeecCC-----ceEeecccccceEEEEccc
Confidence            9999999999999999885 6799999996654431  233388999999999988     7999999999999999766


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                      .             +.+..+.    ..++|.+|+.+|++       ..++.|-.||.+.+
T Consensus       270 ~-------------Kvv~s~~----~~~pvLsiavs~dd-------~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  270 Y-------------KVVHSWK----YPGPVLSIAVSPDD-------QTVVIGMSNGLVSI  305 (487)
T ss_pred             e-------------EEEEeee----cccceeeEEecCCC-------ceEEEecccceeee
Confidence            5             5556554    57899999999998       89999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1e-27  Score=189.50  Aligned_cols=218  Identities=21%  Similarity=0.338  Sum_probs=167.7

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----eeccc-cccccEEEEEEcCCCCEEEEEeCC
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQ-SHSLTVTQIRFSHDDNLLLSVSRD  124 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  124 (298)
                      -.+.+|+..|.++++.|.|..|++|+.     |..|++||+.....    .+.++ +....|.+++|++.+..|++.+..
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~-----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSL-----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccc-----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            456789999999999999999999965     89999999974322    22222 345689999999999999999989


Q ss_pred             CeEEEEEeccCCC-----CccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeec---CC
Q 037555          125 RQFSVFAIQRTGT-----GEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILAL---PP  195 (298)
Q Consensus       125 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~  195 (298)
                      ...+|+|-.-...     +..+..-+..-++|...+++.+|+|.. +.|++++.||++|+||+...+....+...   .+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            9999999663221     111122233446799999999999954 78999999999999999876544322221   13


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc--eEEEEEeecCCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA--AVNRMAWKTHEK  273 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~  273 (298)
                      ..-++++++|++++     ..|++|+.||.|.+|+......           .+...+  -.+|..  .|++|.||+++ 
T Consensus       316 ~Rv~~tsC~~nrdg-----~~iAagc~DGSIQ~W~~~~~~v-----------~p~~~v--k~AH~~g~~Itsi~FS~dg-  376 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDG-----KLIAAGCLDGSIQIWDKGSRTV-----------RPVMKV--KDAHLPGQDITSISFSYDG-  376 (641)
T ss_pred             cccCceeeecCCCc-----chhhhcccCCceeeeecCCccc-----------ccceEe--eeccCCCCceeEEEecccc-
Confidence            34568999999999     7899999999999999865421           222222  235666  89999999999 


Q ss_pred             CCCCcceEEEeeeCCCcEEEeEec
Q 037555          274 PKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            ++|++-|.|+++++|||+
T Consensus       377 ------~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  377 ------NYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ------chhhhccCCCceeeeecc
Confidence                  899999999999999997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.1e-27  Score=173.25  Aligned_cols=211  Identities=23%  Similarity=0.352  Sum_probs=160.6

Q ss_pred             CCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC-ceee-eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           55 HGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS-WKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        55 h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      -.+.|.+++||| ...++++++.     |++||+|+++. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SW-----D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSW-----DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             cccchheeEeccccCceEEeccc-----CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            467899999999 4556667765     99999999986 3433 33557999999999999999999999999999999


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCC--EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH--EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      +.++        ....+..|..+|..+.|-+...  .|++||.|.+|+.||+|...++.   ++. .+..++++..-.  
T Consensus       101 L~S~--------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~---t~~-LPeRvYa~Dv~~--  166 (347)
T KOG0647|consen  101 LASG--------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA---TLQ-LPERVYAADVLY--  166 (347)
T ss_pred             ccCC--------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee---eee-ccceeeehhccC--
Confidence            9973        3667788999999999988654  89999999999999999888777   433 556777776654  


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCC--Ccce-----------------------------eeeeccCCc
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS--TANI-----------------------------IIRFDPFAC  258 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~-----------------------------~~~~~~~~~  258 (298)
                           .+++++..++.|.+|++++..........+.  +.++                             ...| .++.
T Consensus       167 -----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-tFkC  240 (347)
T KOG0647|consen  167 -----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-TFKC  240 (347)
T ss_pred             -----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-eEEE
Confidence                 4788888899999999976532221111110  0000                             0001 1334


Q ss_pred             cc---------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          259 HV---------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       259 ~~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |.         ..|++|+|+|..       ..|+|+|.||+..+||-+
T Consensus       241 HR~~~~~~~~VYaVNsi~FhP~h-------gtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  241 HRSTNSVNDDVYAVNSIAFHPVH-------GTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             eccCCCCCCceEEecceEeeccc-------ceEEEecCCceEEEecch
Confidence            44         368999999988       899999999999999853

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=191.18  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=199.6

Q ss_pred             ccccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEE
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL   87 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~v   87 (298)
                      .++.+|...|..+.++ .+...++++     .+|.     +++++.  .+-+.+..|.|.++++++|     ...|.+.+
T Consensus       367 i~~~GHR~dVRsl~vS-~d~~~~~Sga~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G-----~k~Gel~v  438 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVS-SDSILLASGAGESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLG-----TKNGELQV  438 (888)
T ss_pred             eeeccchhheeEEEee-cCceeeeecCCCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEe-----ccCCceEE
Confidence            5667999999999888 445555555     4663     566664  3478999999999999999     45899999


Q ss_pred             EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce-e-----eeEEeeccCCceEEEEEc
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY-Q-----LIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~~~v~~~~~~  161 (298)
                      ||+.+...+.+.++|.+.|.+++.+||+..+++++.|.+|++||+......+... +     ..+.+ .-...|.++.++
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~S  517 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVS  517 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEc
Confidence            9999999999999999999999999999999999999999999986432210000 1     11122 235679999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      ||+.+|+++=-|.+|++|-+.+.+...   .+.+|.-||.||..+|++     .+++||+.|..|++|-+.-+       
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFfl---sLYGHkLPV~smDIS~DS-----klivTgSADKnVKiWGLdFG-------  582 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFL---SLYGHKLPVLSMDISPDS-----KLIVTGSADKNVKIWGLDFG-------  582 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeee---eecccccceeEEeccCCc-----CeEEeccCCCceEEeccccc-------
Confidence            999999999999999999999877655   778999999999999999     89999999999999999888       


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                            .|.+.+   -+|...|.++.|-|..       .++.+||.|+.|+-||-
T Consensus       583 ------DCHKS~---fAHdDSvm~V~F~P~~-------~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  583 ------DCHKSF---FAHDDSVMSVQFLPKT-------HLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             ------hhhhhh---hcccCceeEEEEcccc-------eeEEEecCcceEEeech
Confidence                  666664   4699999999999988       89999999999999974

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-26  Score=167.69  Aligned_cols=219  Identities=22%  Similarity=0.332  Sum_probs=175.7

Q ss_pred             ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCC--CCEEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHD--DNLLLSV  121 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~  121 (298)
                      .+.+|.||.++|.-++|..  .|.+||++++     ||.|.||.-+.++-  ......|...|++++|.|.  |-.|+.+
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY-----DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca  122 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSY-----DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA  122 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeec-----CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe
Confidence            5678999999999999975  7999999965     99999999887743  3446789999999999995  4588999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---C-----------CEEEEeeCCCeEEEEEccCCcce
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---G-----------HEFATGSRDKTVKIWAVENKSSV  187 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~~wd~~~~~~~  187 (298)
                      +.||.|.|.+.+....    ....+....|.-.|++++|.|.   |           ..|++|+.|..|+||+....+-.
T Consensus       123 sSDG~vsvl~~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~  198 (299)
T KOG1332|consen  123 SSDGKVSVLTYDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK  198 (299)
T ss_pred             eCCCcEEEEEEcCCCC----ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence            9999999999987522    3445666789999999999985   4           56999999999999999886433


Q ss_pred             eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      .. ..+.+|...|+.++|.|.-. -...+|+++++||.|.||..+....+          .....   +......+..+.
T Consensus       199 ~e-~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~~e~e~----------wk~tl---l~~f~~~~w~vS  263 (299)
T KOG1332|consen  199 LE-RTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKDEEYEP----------WKKTL---LEEFPDVVWRVS  263 (299)
T ss_pred             hh-hhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEecCccCc----------ccccc---cccCCcceEEEE
Confidence            22 25788999999999999752 22368999999999999988733111          11122   223567899999


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+..+       +.|+.++.|+.+.+|.-+
T Consensus       264 WS~sG-------n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  264 WSLSG-------NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             Eeccc-------cEEEEecCCcEEEEEEeC
Confidence            99999       899999999999999754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=193.82  Aligned_cols=200  Identities=22%  Similarity=0.316  Sum_probs=174.4

Q ss_pred             eEE-eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           49 SHK-LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        49 ~~~-~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      +.. +.||.+.|.++++..-+.+|++|+.     |.++++||..++++..++.+|.+.|.++...  ...+++|+.|.+|
T Consensus       241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~-----D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tV  313 (537)
T KOG0274|consen  241 ILTRLVGHFGGVWGLAFPSGGDKLVSGST-----DKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTV  313 (537)
T ss_pred             EEeeccCCCCCceeEEEecCCCEEEEEec-----CCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceE
Confidence            444 8899999999999887889999965     9999999999999999999999999998874  4578889999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ++|++++       ...+..+.+|..+|.++..+  +.++++|+.|++|++||+.+.+++.   .+.+|...|+++.+.+
T Consensus       314 kVW~v~n-------~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  314 KVWDVTN-------GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSGHTGRVYSLIVDS  381 (537)
T ss_pred             EEEeccC-------cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecCCcceEEEEEecC
Confidence            9999997       66788888899999999998  8899999999999999999888888   8889999999998877


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      .      ..+++|+.|+.|++||+++..            +++..   +.+|..-+..+.+..         ++|++++.
T Consensus       382 ~------~~~~Sgs~D~~IkvWdl~~~~------------~c~~t---l~~h~~~v~~l~~~~---------~~Lvs~~a  431 (537)
T KOG0274|consen  382 E------NRLLSGSLDTTIKVWDLRTKR------------KCIHT---LQGHTSLVSSLLLRD---------NFLVSSSA  431 (537)
T ss_pred             c------ceEEeeeeccceEeecCCchh------------hhhhh---hcCCccccccccccc---------ceeEeccc
Confidence            4      379999999999999999762            22222   667888887766644         68999999


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      |++|++||..
T Consensus       432 D~~Ik~WD~~  441 (537)
T KOG0274|consen  432 DGTIKLWDAE  441 (537)
T ss_pred             cccEEEeecc
Confidence            9999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.4e-27  Score=181.71  Aligned_cols=249  Identities=18%  Similarity=0.209  Sum_probs=199.7

Q ss_pred             ccceeeeecCc--ccccccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555            5 TRETVERHGND--GLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus         5 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~   72 (298)
                      .++.|+...++  ...+|.|..+++..+.+.++....++..     ++|+     ...+|.||++.|+++.|......++
T Consensus       198 ~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vV  277 (459)
T KOG0288|consen  198 IIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVV  277 (459)
T ss_pred             hhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccccee
Confidence            34555655555  7888999999999999997777666665     5885     5788999999999999988777788


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +|+     .|.+|++||+.+..+.+++. ..+.+.+|..+  ...++++..|+.|++||.+.       .........+ 
T Consensus       278 sgs-----~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-------~~~~~sv~~g-  341 (459)
T KOG0288|consen  278 SGS-----ADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-------ADKTRSVPLG-  341 (459)
T ss_pred             ecc-----ccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccC-------CceeeEeecC-
Confidence            884     59999999999888877755 34556777765  56789999999999999987       4445555544 


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +.|+++..++++..+++++.|.++.+.|+++......+.... ......+.+.|+|++     .|+++|+.||.|+||++
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~-----~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG-----SYVAAGSADGSVYIWSV  416 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC-----ceeeeccCCCcEEEEEc
Confidence            589999999999999999999999999999987766332211 123448899999999     79999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      .++             ++...+.. ......|+++.|+|.|       ..|++++.++.+.+|.
T Consensus       417 ~tg-------------KlE~~l~~-s~s~~aI~s~~W~~sG-------~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  417 FTG-------------KLEKVLSL-STSNAAITSLSWNPSG-------SGLLSADKQKAVTLWT  459 (459)
T ss_pred             cCc-------------eEEEEecc-CCCCcceEEEEEcCCC-------chhhcccCCcceEecC
Confidence            988             66666543 2223379999999999       8999999999999993

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=175.91  Aligned_cols=227  Identities=19%  Similarity=0.272  Sum_probs=171.7

Q ss_pred             CCCCceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCC-CCEE
Q 037555           44 TLWPESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHD-DNLL  118 (298)
Q Consensus        44 ~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l  118 (298)
                      ....++.++.+|...=++++|||-. ..|++|     +--+.|++|...++.-.   ..|.+|+..|..++|+|. ...|
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG-----Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf  273 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG-----DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF  273 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccC-----ccccceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence            3445789999999999999999932 246666     44678999999876532   347789999999999994 4689


Q ss_pred             EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555          119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                      ++|+.||+|+|||++.....    ..+. .+.|.+.|+-|.|+....+||+|+.||+++|||+|+.+.-..+..++-|..
T Consensus       274 aScS~DgsIrIWDiRs~~~~----~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  274 ASCSCDGSIRIWDIRSGPKK----AAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             EeeecCceEEEEEecCCCcc----ceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence            99999999999999986431    2233 388999999999999888999999999999999998777666778888999


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC-CCCCC--cceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST-PAPST--ANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      +|+++.|+|...    ..|++++.|.+|.+||+....-..... .....  .-+...+... .-...|..+.|++.-+  
T Consensus       349 pItsieW~p~e~----s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiP--  421 (440)
T KOG0302|consen  349 PITSIEWHPHED----SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIP--  421 (440)
T ss_pred             CeeEEEeccccC----ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCC--
Confidence            999999999775    789999999999999997643211100 00000  0000111100 1245688899999875  


Q ss_pred             CCcceEEEeeeCCCcE
Q 037555          276 NSRTMQLASCGADNTV  291 (298)
Q Consensus       276 ~~~~~~l~s~~~d~~i  291 (298)
                          .+|++.+.||.-
T Consensus       422 ----G~lvsTa~dGfn  433 (440)
T KOG0302|consen  422 ----GLLVSTAIDGFN  433 (440)
T ss_pred             ----CeEEEeccccee
Confidence                789999999843

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9e-28  Score=182.13  Aligned_cols=213  Identities=17%  Similarity=0.275  Sum_probs=171.6

Q ss_pred             CceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           47 PESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      |.+..|.||.+.|.|++=+|.. ..+++|+     .||.|++||+.+.++..++.+|.+.|..|++..  ..+++++.|.
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs-----~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK  129 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGS-----CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK  129 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccc-----cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence            4677889999999999999976 7788885     499999999999999999999999999999976  6789999999


Q ss_pred             eEEEEEeccCCCCcc-------------------------------ceeeeEEeeccCCceEEEEEccCC-CEEEEeeCC
Q 037555          126 QFSVFAIQRTGTGEI-------------------------------DYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRD  173 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  173 (298)
                      +|+.|.+..+.....                               ...+++.+..-...|.++.|+|.. ..|+++..|
T Consensus       130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            999998543210000                               112333344445567888899854 677788899


Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
                      +.|.+||+++..++..+.    ....-+.++|+|..     ..+++|++|..++.||++.-               ...+
T Consensus       210 rsIvLyD~R~~~Pl~KVi----~~mRTN~IswnPea-----fnF~~a~ED~nlY~~DmR~l---------------~~p~  265 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVI----LTMRTNTICWNPEA-----FNFVAANEDHNLYTYDMRNL---------------SRPL  265 (433)
T ss_pred             CceEEEecccCCccceee----eeccccceecCccc-----cceeeccccccceehhhhhh---------------cccc
Confidence            999999999998887442    34456789999976     67889999999999999854               3334


Q ss_pred             ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..+.+|.+.|.+++|+|.|       .-+++||.|.+|+||.++
T Consensus       266 ~v~~dhvsAV~dVdfsptG-------~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTG-------QEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             hhhcccceeEEEeccCCCc-------chhccccccceEEEeecC
Confidence            4477899999999999999       899999999999999764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.6e-25  Score=164.70  Aligned_cols=261  Identities=21%  Similarity=0.352  Sum_probs=193.5

Q ss_pred             cCCCCCceeeeccCCCccccccc------CC---------CCceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCce
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH------TL---------WPESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAA   83 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~   83 (298)
                      .+|.+-|.++.|+ +.+.++++.      ++         |.+-...+.|.+.|..+.|.+  -|+.+|+++.     |+
T Consensus        10 s~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~-----Dr   83 (361)
T KOG2445|consen   10 SGHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY-----DR   83 (361)
T ss_pred             cCCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec-----CC
Confidence            4788889999998 778887776      23         345566788999999999965  5899999965     99


Q ss_pred             EEEEEEcCC---------ceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee---
Q 037555           84 EIWLWEVGS---------WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE---  149 (298)
Q Consensus        84 ~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---  149 (298)
                      ++.||.-..         .....++......|+++.|.|  -|-.|++++.||.++||+......... +.+...+.   
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQHEIQNVI  162 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhhhhhhhcc
Confidence            999998621         123344566778999999999  567899999999999999766433221 33333332   


Q ss_pred             ----ccCCceEEEEEccC---CCEEEEeeCC-----CeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          150 ----AHKRIIWSCSWNPF---GHEFATGSRD-----KTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       150 ----~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                          .+..+..|+.|+|.   ..+|++|+.+     +.++||...... ....+..+.+|..+|+.++|.|.- .....+
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~-Gr~y~~  241 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI-GRSYHL  241 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc-CCceee
Confidence                45677889999984   4688888865     478888765433 445555778999999999999975 233368


Q ss_pred             EEEeecCCcEEEEEeeecccccccC----CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          217 LAVGMESGVIELWSISVNRTNDVST----PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                      |++++.|| |+||++...+......    +.....-.+..+..+..|...|+.+.|+-.|       ..|++.|.||+||
T Consensus       242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-------tiLsStGdDG~VR  313 (361)
T KOG2445|consen  242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-------TILSSTGDDGCVR  313 (361)
T ss_pred             EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-------eEEeecCCCceee
Confidence            99999999 9999998643222111    1111113345566678899999999999999       8999999999999


Q ss_pred             EeEec
Q 037555          293 VFQVN  297 (298)
Q Consensus       293 iw~~~  297 (298)
                      +|..+
T Consensus       314 LWkan  318 (361)
T KOG2445|consen  314 LWKAN  318 (361)
T ss_pred             ehhhh
Confidence            99754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.5e-26  Score=195.28  Aligned_cols=231  Identities=19%  Similarity=0.318  Sum_probs=177.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------ceeeeccccccccEEEEEEcCCCCEEEEEe
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      +...|.+++.+|+|..+|+|+.   ..|+.++||+.+.            .+.+.++..|.+.|.|+.|+|||++||+|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq---~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQ---VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCc---cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            3456999999999999999974   4688888999752            233455667999999999999999999999


Q ss_pred             CCCeEEEEEeccCC-----------CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555          123 RDRQFSVFAIQRTG-----------TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL  191 (298)
Q Consensus       123 ~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  191 (298)
                      .|+.|.+|......           .....++.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+.   
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~---  165 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK---  165 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee---
Confidence            99999999987311           1122467888999999999999999999999999999999999999987666   


Q ss_pred             ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc------------------cCCCCC--------
Q 037555          192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV------------------STPAPS--------  245 (298)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~------------------~~~~~~--------  245 (298)
                      .+.+|.+.|..+.|.|.|     +||++-+.|++|+||++.+......                  ..+...        
T Consensus       166 vl~~H~s~VKGvs~DP~G-----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIG-----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             eeecccccccceEECCcc-----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            788999999999999999     8999999999999999654211000                  000000        


Q ss_pred             --Ccceeeee--------ccCCcccceEEEEEeecCC---CCC---CCcc----eEEEeeeCCCcEEEeEe
Q 037555          246 --TANIIIRF--------DPFACHVAAVNRMAWKTHE---KPK---NSRT----MQLASCGADNTVRVFQV  296 (298)
Q Consensus       246 --~~~~~~~~--------~~~~~~~~~v~~~~~~~~~---~~~---~~~~----~~l~s~~~d~~i~iw~~  296 (298)
                        ...++..+        ..+.+|..++..+.|+|.-   +..   ....    ..+|+|+.|++|.||..
T Consensus       241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence              00111111        1266899999999999831   100   1111    26889999999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-24  Score=162.38  Aligned_cols=237  Identities=12%  Similarity=0.101  Sum_probs=179.9

Q ss_pred             CCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555           23 VPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG   91 (298)
Q Consensus        23 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~   91 (298)
                      -.+.+..+.|. +.++.+++.           .--..++++..++..|..+.|......++.++.   ..|.+|+..++.
T Consensus        13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl~   88 (311)
T KOG1446|consen   13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSLH   88 (311)
T ss_pred             CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCCceEEEEee
Confidence            34455566665 444444443           222357778888889999999877777777765   568999999999


Q ss_pred             CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555           92 SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      +.+.++-|.+|...|.+++.+|-+..+++++.|++|++||++...       +...+..  ..-..++|.|+|-++|++.
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-------cqg~l~~--~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-------CQGLLNL--SGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-------CceEEec--CCCcceeECCCCcEEEEec
Confidence            999999999999999999999988999999999999999999632       2333322  2234578999999999999


Q ss_pred             CCCeEEEEEccCC-cceeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555          172 RDKTVKIWAVENK-SSVKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       172 ~dg~i~~wd~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                      ..+.|++||+|.- +.......+. ......+.+.|+|+|     ++|+.++..+.+++.|.-.+             ..
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-----K~iLlsT~~s~~~~lDAf~G-------------~~  221 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-----KSILLSTNASFIYLLDAFDG-------------TV  221 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-----CEEEEEeCCCcEEEEEccCC-------------cE
Confidence            8889999999975 2222221222 346778999999999     78999999999999999887             44


Q ss_pred             eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ...+.....-..--.+.+|+||+       +++++|+.||+|.+|+++
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds-------~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDS-------KFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCC-------cEEEEecCCCcEEEEEcC
Confidence            44444322222223678899999       899999999999999975

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-27  Score=194.81  Aligned_cols=200  Identities=20%  Similarity=0.442  Sum_probs=164.4

Q ss_pred             ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC---ceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEe
Q 037555           58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  132 (298)
                      .+..+.|.. +.++||+++     ..|.|.+||+..   .+.+..|..|+..++++.|++ ..++|++|+.||+|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s-----~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCS-----TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             ehhhcccccchhhhheeec-----CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            355667764 467889995     489999999986   455667889999999999998 5679999999999999999


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      +..       .-...+......|..++|+| .+++|+++.+.|.+.+||+|......  ..+.+|.++|.++.|+|+.  
T Consensus       164 R~~-------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr--  232 (839)
T KOG0269|consen  164 RSK-------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNR--  232 (839)
T ss_pred             ecc-------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCCC--
Confidence            974       33555566778899999999 67899999999999999999765432  3677899999999999977  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee--CCC
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG--ADN  289 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~  289 (298)
                         .+||+|+.|+.|+|||+...+.           ..+..+.    ...+|..+.|-|..+      ..|++|+  .|-
T Consensus       233 ---~~lATGGRDK~vkiWd~t~~~~-----------~~~~tIn----Tiapv~rVkWRP~~~------~hLAtcsmv~dt  288 (839)
T KOG0269|consen  233 ---EWLATGGRDKMVKIWDMTDSRA-----------KPKHTIN----TIAPVGRVKWRPARS------YHLATCSMVVDT  288 (839)
T ss_pred             ---ceeeecCCCccEEEEeccCCCc-----------cceeEEe----ecceeeeeeeccCcc------chhhhhhccccc
Confidence               8999999999999999986533           3333333    357899999999985      7888887  478


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      .|+|||++
T Consensus       289 sV~VWDvr  296 (839)
T KOG0269|consen  289 SVHVWDVR  296 (839)
T ss_pred             eEEEEeec
Confidence            89999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-24  Score=155.78  Aligned_cols=206  Identities=22%  Similarity=0.301  Sum_probs=164.1

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-----eeccccccccEEEEEEcCC----CCEEEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSHSLTVTQIRFSHD----DNLLLS  120 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~  120 (298)
                      +.-+.|++.|+|.+|+|+|.++++|+     .|.+|++..++...+     -..|.-|.+.|..++|..+    +.+|++
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgs-----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGS-----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecC-----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            34457999999999999999999995     589999987653322     1336679999999999653    346666


Q ss_pred             EeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE-EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CC--
Q 037555          121 VSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC-SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PP--  195 (298)
Q Consensus       121 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~--  195 (298)
                      ++. |..|.+-|...       +.....+.+|.+.|.++ .|  ++-+|++|+.|.+|++||++-..++..+.+- +.  
T Consensus       158 ~gagdc~iy~tdc~~-------g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g  228 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGR-------GQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG  228 (350)
T ss_pred             cCCCcceEEEeecCC-------CCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence            543 66666667665       55678888999998876 44  4889999999999999999987776643221 11  


Q ss_pred             -CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          196 -FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       196 -~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                       ..+.|.+++..|.+     .+|++|..|....+||++.+             ..+..+.   .|...|.++.|+|..  
T Consensus       229 lessavaav~vdpsg-----rll~sg~~dssc~lydirg~-------------r~iq~f~---phsadir~vrfsp~a--  285 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSG-----RLLASGHADSSCMLYDIRGG-------------RMIQRFH---PHSADIRCVRFSPGA--  285 (350)
T ss_pred             cccceeEEEEECCCc-----ceeeeccCCCceEEEEeeCC-------------ceeeeeC---CCccceeEEEeCCCc--
Confidence             12569999999999     79999999999999999988             5666655   599999999999998  


Q ss_pred             CCCcceEEEeeeCCCcEEEeEec
Q 037555          275 KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           .+|++|+.|..|++-|++
T Consensus       286 -----~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  286 -----HYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             -----eEEEEecccceEEEeecc
Confidence                 999999999999998875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.3e-27  Score=168.09  Aligned_cols=218  Identities=19%  Similarity=0.280  Sum_probs=174.6

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ  126 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~  126 (298)
                      -..|.+.|..+...-.|++||+++.     |++|+|+.++..   +.+..+.+|.++|..++|..  -|.+|++++.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsS-----D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSS-----DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecC-----CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            3579999999998889999999965     999999998754   45778999999999999976  8999999999999


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      |.||.-..+.     .........|...|++++|.|.+  -.|+.++.||.|.+.+.+....-..-.....|.-.|++++
T Consensus        82 VIiWke~~g~-----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   82 VIIWKEENGR-----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             EEEEecCCCc-----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            9999987653     55566777899999999999954  6889999999999999987622221124457889999999


Q ss_pred             Eeeccc---------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          205 WVGLDR---------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       205 ~~~~~~---------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      |.|...         ...-..|++|+.|..|+||+..+.+-           .....   +.+|...|..++|.|.-.  
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-----------~~e~~---l~~H~dwVRDVAwaP~~g--  220 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-----------KLERT---LEGHKDWVRDVAWAPSVG--  220 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-----------hhhhh---hhhcchhhhhhhhccccC--
Confidence            999732         11125699999999999999987521           11111   668999999999999741  


Q ss_pred             CCcceEEEeeeCCCcEEEeEe
Q 037555          276 NSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       276 ~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       -....|++|+.||++.||-.
T Consensus       221 -l~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  221 -LPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             -CCceeeEEecCCCcEEEEEe
Confidence             11268999999999999964

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.3e-25  Score=157.09  Aligned_cols=237  Identities=14%  Similarity=0.235  Sum_probs=191.1

Q ss_pred             cCCCCCceeeeccCCCcccccccCCCCc----------------eEEeccCCCceEEEEEcC----CCCEEEeEeccCCC
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWHTLWPE----------------SHKLYGHGNELFSLCCDH----QGKLVASSCKAQST   80 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~h~~~v~~~~~s~----~~~~l~~~~~~~~~   80 (298)
                      +.|.+.+++.+++ |.++.++++..-+.                -..|.-|.+.|..++|-.    .+.+|++++    .
T Consensus        86 khhkgsiyc~~ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g----a  160 (350)
T KOG0641|consen   86 KHHKGSIYCTAWS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG----A  160 (350)
T ss_pred             cccCccEEEEEec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC----C
Confidence            5788899999999 77888888743221                234556889999999954    356788776    4


Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec-------cCC
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-------HKR  153 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~  153 (298)
                      .|-.|++-|..+++..+.+.+|++.|.++- +-++-.+++|+.|.+|++||++..       ..+..+..       ...
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~-------~~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-------SCVNTLDNDFHDGGLESS  232 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-------ceeeeccCcccCCCcccc
Confidence            588899999999999999999999998773 336889999999999999999873       23333321       236


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|.+++..|.|++|++|-.|....+||++.++.++   .+..|...|+++.|+|..     .++++++.|..|++-|+..
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a-----~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGA-----HYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCc-----eEEEEecccceEEEeeccc
Confidence            79999999999999999999999999999999888   778899999999999988     8999999999999999875


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .-...         -++..   ...|...+..+.|+|..       --+++.+.|.++.+|-++
T Consensus       305 dla~e---------l~~~v---v~ehkdk~i~~rwh~~d-------~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  305 DLAHE---------LPIMV---VAEHKDKAIQCRWHPQD-------FSFISSSADKTATLWALN  349 (350)
T ss_pred             chhhc---------CceEE---EEeccCceEEEEecCcc-------ceeeeccCcceEEEeccC
Confidence            32111         11222   33588999999999998       789999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=9.9e-27  Score=179.16  Aligned_cols=237  Identities=20%  Similarity=0.255  Sum_probs=190.3

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCC
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA   81 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~   81 (298)
                      .....+..|...|..+.|. +..+.++++      .+|+       .+.+|.|..++|+++.|.++++.+++++     .
T Consensus       166 ~~~~~ld~h~gev~~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas-----~  239 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFL-RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS-----N  239 (459)
T ss_pred             hhhhhhhccccccceeEEc-cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec-----C
Confidence            3456678899999998888 454555555      4664       4677888999999999999999999884     5


Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      |+.+++|++.+.+...++.+|++.|+++.|......+++|+.|.+|++||+..       ..+.+++. ....+..|+.+
T Consensus       240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-------~~C~kt~l-~~S~cnDI~~~  311 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-------AYCSKTVL-PGSQCNDIVCS  311 (459)
T ss_pred             CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-------hheecccc-ccccccceEec
Confidence            99999999999999999999999999999998777799999999999999987       34444433 23455666665


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                        ...+++|-.|++|++||++......   ..+ ..+.|+++..++++     ..+++++.|..+.++|+++..      
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~---sv~-~gg~vtSl~ls~~g-----~~lLsssRDdtl~viDlRt~e------  374 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTR---SVP-LGGRVTSLDLSMDG-----LELLSSSRDDTLKVIDLRTKE------  374 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceee---Eee-cCcceeeEeeccCC-----eEEeeecCCCceeeeeccccc------
Confidence              5678899999999999999988776   444 44599999999998     678888999999999999863      


Q ss_pred             CCCCCcceeeeecc--CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 PAPSTANIIIRFDP--FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             ....+..  +. -....+.+.|||++       .|+++||.||.|+||++.
T Consensus       375 -------I~~~~sA~g~k-~asDwtrvvfSpd~-------~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  375 -------IRQTFSAEGFK-CASDWTRVVFSPDG-------SYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             -------EEEEeeccccc-cccccceeEECCCC-------ceeeeccCCCcEEEEEcc
Confidence                   2222221  11 12338899999999       899999999999999974

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=167.64  Aligned_cols=221  Identities=17%  Similarity=0.267  Sum_probs=165.7

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--eccc--cccccEEEEEEcCCCC-EEEEEeC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQ--SHSLTVTQIRFSHDDN-LLLSVSR  123 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~-~l~~~~~  123 (298)
                      +..|++|.+.|++++|+.||+.||+++     .|+.|++|+++.....  +.++  -.-+..+.+.|.||-+ .++++..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence            567889999999999999999999995     4999999999753211  1111  1122457899999876 4555666


Q ss_pred             CCeEEEEEeccCCCCccceeee-----EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLI-----ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                      ...+++|.+.....+......+     ...+.|.-.+-.+-....+.+|++++.|..|.+|+++ ++.+.   .+...+.
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---~idtnq~  229 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---SIDTNQS  229 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee---eeccccc
Confidence            7789999887654432211111     1223455566667677778899999999999999999 66666   5555566


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .-+..+.+|+|     .++++++-...|++|.+--++.-..        +.+.+..++.+|...|..++|+++.      
T Consensus       230 ~n~~aavSP~G-----RFia~~gFTpDVkVwE~~f~kdG~f--------qev~rvf~LkGH~saV~~~aFsn~S------  290 (420)
T KOG2096|consen  230 SNYDAAVSPDG-----RFIAVSGFTPDVKVWEPIFTKDGTF--------QEVKRVFSLKGHQSAVLAAAFSNSS------  290 (420)
T ss_pred             cccceeeCCCC-----cEEEEecCCCCceEEEEEeccCcch--------hhhhhhheeccchhheeeeeeCCCc------
Confidence            67788999999     7999999999999999854432111        4445555688999999999999999      


Q ss_pred             ceEEEeeeCCCcEEEeEecC
Q 037555          279 TMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~~  298 (298)
                       ..++|.+.||++||||.++
T Consensus       291 -~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  291 -TRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             -ceeEEEecCCcEEEeeccc
Confidence             8999999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.8e-27  Score=193.30  Aligned_cols=205  Identities=21%  Similarity=0.374  Sum_probs=170.4

Q ss_pred             EEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555           50 HKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF  127 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  127 (298)
                      ..|..|...|+++.|++.. .+|++|     +.||.|++||++..+...++.+-...|.+++|+| .++.|+++...|.+
T Consensus       127 ~~f~EH~Rs~~~ldfh~tep~iliSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l  201 (839)
T KOG0269|consen  127 TVFNEHERSANKLDFHSTEPNILISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL  201 (839)
T ss_pred             hHhhhhccceeeeeeccCCccEEEec-----CCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence            3677899999999999865 466777     5699999999999998889998899999999999 67899999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ++||++.+      .+....+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+... +.++. ...++.++.|-|
T Consensus       202 qlWDlRqp------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-~~tIn-Tiapv~rVkWRP  273 (839)
T KOG0269|consen  202 QLWDLRQP------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP-KHTIN-TIAPVGRVKWRP  273 (839)
T ss_pred             EEeeccCc------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-eeEEe-ecceeeeeeecc
Confidence            99999986      45667788999999999999999999999999999999998655432 22333 457899999999


Q ss_pred             ccccCCccEEEEee--cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          208 LDRQKNHGFLAVGM--ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       208 ~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      ..+    ..|++++  .|..|+|||++-..               ..+..+..|...++.++|.....      ..|.+|
T Consensus       274 ~~~----~hLAtcsmv~dtsV~VWDvrRPY---------------IP~~t~~eH~~~vt~i~W~~~d~------~~l~s~  328 (839)
T KOG0269|consen  274 ARS----YHLATCSMVVDTSVHVWDVRRPY---------------IPYATFLEHTDSVTGIAWDSGDR------INLWSC  328 (839)
T ss_pred             Ccc----chhhhhhccccceEEEEeecccc---------------ccceeeeccCccccceeccCCCc------eeeEee
Confidence            885    6777776  47899999998542               22333556999999999977332      789999


Q ss_pred             eCCCcEE
Q 037555          286 GADNTVR  292 (298)
Q Consensus       286 ~~d~~i~  292 (298)
                      +.||+|.
T Consensus       329 sKD~tv~  335 (839)
T KOG0269|consen  329 SKDGTVL  335 (839)
T ss_pred             cCccHHH
Confidence            9999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=187.77  Aligned_cols=213  Identities=16%  Similarity=0.243  Sum_probs=182.4

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeeccccccccEEEEEE-cCCCCEEEEEeCCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRF-SHDDNLLLSVSRDR  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg  125 (298)
                      +..+..|.+.|+.+....+++.|++++.     |.+|++|+...+  -+..++..|...|.|+++ .++..++++|+.|+
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~Ss-----DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASS-----DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecC-----CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            5667789999999999999999999954     899999999877  567778899999999999 77888999999999


Q ss_pred             eEEEEEeccCCCC---ccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          126 QFSVFAIQRTGTG---EIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       126 ~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      .|.+||+..+...   .........+. ++...|++++.++.+..|++|+..+.|++||.++.+.+.   .+.+|...|.
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr  217 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVR  217 (735)
T ss_pred             cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee---eeeccccceE
Confidence            9999999975320   00112223333 788899999999999999999999999999999998877   6679999999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .+..+++|     ..+++++.||+|++||+...             +++..   +..|...|+++..+|+-       ..
T Consensus       218 ~ll~~dDG-----t~~ls~sSDgtIrlWdLgqQ-------------rCl~T---~~vH~e~VWaL~~~~sf-------~~  269 (735)
T KOG0308|consen  218 VLLVNDDG-----TRLLSASSDGTIRLWDLGQQ-------------RCLAT---YIVHKEGVWALQSSPSF-------TH  269 (735)
T ss_pred             EEEEcCCC-----CeEeecCCCceEEeeecccc-------------ceeee---EEeccCceEEEeeCCCc-------ce
Confidence            99999999     79999999999999999877             66666   44699999999999998       89


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      +.+|+.||.|..=|++
T Consensus       270 vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLR  285 (735)
T ss_pred             EEecCCCCcEEecccC
Confidence            9999999999876654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.2e-27  Score=193.49  Aligned_cols=227  Identities=22%  Similarity=0.338  Sum_probs=188.5

Q ss_pred             ccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      ..+..|...|.++... .....++.+      .||.     .+..|++|..+|.++.|++...+|++|     ..+|+|+
T Consensus        22 ~~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag-----sasgtiK   95 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG-----SASGTIK   95 (825)
T ss_pred             hhhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc-----ccCCcee
Confidence            4555666666655531 222222222      3453     245689999999999999999999999     5699999


Q ss_pred             EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555           87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus        87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (298)
                      +||++..+.++++.+|...+..+.|+|-+.++++++.|+.+++||.+.       ..+...+.+|...|..+.|+|+|++
T Consensus        96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-------~Gc~~~~~s~~~vv~~l~lsP~Gr~  168 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-------KGCSHTYKSHTRVVDVLRLSPDGRW  168 (825)
T ss_pred             eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-------cCceeeecCCcceeEEEeecCCCce
Confidence            999999999999999999999999999999999999999999999997       5567888889999999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                      ++.++.|..+++||+..++...   .+..|...+.++.|+|..     .++++|+.|+.|++||+++.            
T Consensus       169 v~~g~ed~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e-----~Lla~Gs~d~tv~f~dletf------------  228 (825)
T KOG0267|consen  169 VASGGEDNTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLE-----VLLAPGSSDRTVRFWDLETF------------  228 (825)
T ss_pred             eeccCCcceeeeeccccccccc---ccccccccccccccCchh-----hhhccCCCCceeeeecccee------------
Confidence            9999999999999999998887   778899999999999988     68999999999999999875            


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                       ..+..   .......|.+++|+|++       ..+++|..+
T Consensus       229 -e~I~s---~~~~~~~v~~~~fn~~~-------~~~~~G~q~  259 (825)
T KOG0267|consen  229 -EVISS---GKPETDGVRSLAFNPDG-------KIVLSGEQI  259 (825)
T ss_pred             -EEeec---cCCccCCceeeeecCCc-------eeeecCchh
Confidence             33333   23346789999999999       666666543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.5e-25  Score=164.07  Aligned_cols=221  Identities=23%  Similarity=0.335  Sum_probs=170.5

Q ss_pred             eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCce----------eee-----ccccccccEEEEEEc
Q 037555           49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWK----------AMG-----RLQSHSLTVTQIRFS  112 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~-----~~~~~~~~v~~~~~~  112 (298)
                      ......|.+.|+++...+ .|+++++|     +.||.|.+||++.-.          .+.     .-.+|.-.|.++.|-
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSG-----gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSG-----GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY  110 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeec-----CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence            344567999999999987 68899999     569999999997532          111     123688899999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCccee
Q 037555          113 H-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       113 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      | |.-.+.+++.|.++++||..+       .+....++ .++.|++-+++|-   .-++|+|..|-.|++-|+..+....
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnT-------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNT-------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eecCceeecccccceEEEeeccc-------ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            9 556888999999999999987       33333333 5677888889883   4578888899999999999998887


Q ss_pred             eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555          189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW  268 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  268 (298)
                         .+.+|...|.++.|+|...    -+|++|+-||.|++||++............+. +....+.....|.+.|+.++|
T Consensus       183 ---~LsGHr~~vlaV~Wsp~~e----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~  254 (397)
T KOG4283|consen  183 ---TLSGHRDGVLAVEWSPSSE----WVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAW  254 (397)
T ss_pred             ---eeccccCceEEEEeccCce----eEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeee
Confidence               8889999999999999885    78899999999999999864211110000000 111112224579999999999


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..++       .++++++.|..+++|+..
T Consensus       255 tSd~-------~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  255 TSDA-------RYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cccc-------hhhhhccCccceEEeecc
Confidence            9999       899999999999999863

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.5e-26  Score=186.31  Aligned_cols=206  Identities=18%  Similarity=0.302  Sum_probs=169.1

Q ss_pred             cCCCceE---EEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCce------eeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555           54 GHGNELF---SLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWK------AMGRLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        54 ~h~~~v~---~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      .|...|.   ++..+ |.+++|.+||+     ||.|++|++....      .+..++.|...|..+....+++.|+++|.
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGR-----Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss   93 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGR-----DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS   93 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCC-----CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC
Confidence            3445555   45554 46778999955     9999999985432      36678899999999999999999999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE-ccCCCEEEEeeCCCeEEEEEccCCcc--ee-----eeeecC-
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW-NPFGHEFATGSRDKTVKIWAVENKSS--VK-----QILALP-  194 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~--~~-----~~~~~~-  194 (298)
                      |-+|++|+.....     .-+...+..|.+.|.+++. .++...+|+|+-|+.|.+||+.++..  ..     ....+. 
T Consensus        94 DtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen   94 DTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             CceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            9999999998643     2456788899999999999 77888999999999999999997632  11     111223 


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      ++...|++++.++.+     ..+++|+.++.|++||.++.             ..+..   +.+|...|..+..++||  
T Consensus       169 G~k~siYSLA~N~t~-----t~ivsGgtek~lr~wDprt~-------------~kimk---LrGHTdNVr~ll~~dDG--  225 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTG-----TIIVSGGTEKDLRLWDPRTC-------------KKIMK---LRGHTDNVRVLLVNDDG--  225 (735)
T ss_pred             CCccceeeeecCCcc-----eEEEecCcccceEEeccccc-------------cceee---eeccccceEEEEEcCCC--
Confidence            677889999999998     79999999999999999977             33333   56899999999999999  


Q ss_pred             CCCcceEEEeeeCCCcEEEeEec
Q 037555          275 KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           ..++++++||+|++|||.
T Consensus       226 -----t~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  226 -----TRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             -----CeEeecCCCceEEeeecc
Confidence                 899999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=183.85  Aligned_cols=207  Identities=16%  Similarity=0.292  Sum_probs=175.1

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFS  128 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~  128 (298)
                      ..+....+.+++.+|+|++||+|     +.-|+|+||++.+.+....+..|+..|.|+.|+.   ..++|++++.|..|+
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsG-----Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH  529 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASG-----DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH  529 (1080)
T ss_pred             hcCcccceEEEEECCCcceeccc-----CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence            34566789999999999999999     5589999999999888888999999999999986   457899999999999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCC-------------------------------------------------ceEEEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKR-------------------------------------------------IIWSCS  159 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~v~~~~  159 (298)
                      +||+...      ..+++++.+|..                                                 .++.++
T Consensus       530 V~Dv~rn------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  530 VYDVKRN------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             EEecccc------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence            9998653      222333333333                                                 355666


Q ss_pred             EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555          160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV  239 (298)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  239 (298)
                      ..|...++++++.|..|+|||+.++++.+.+..-..+.+..-.+...|.+     .|+++.+.|.++.++|+.++     
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----iY~atScsdktl~~~Df~sg-----  673 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----IYLATSCSDKTLCFVDFVSG-----  673 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----cEEEEeecCCceEEEEeccc-----
Confidence            67777889999999999999999999988665556677778889999999     79999999999999999998     


Q ss_pred             cCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          240 STPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                              +++..   +.+|...|+.+.|.+|.       ..|++.+.||.|.+|.+.
T Consensus       674 --------EcvA~---m~GHsE~VTG~kF~nDC-------kHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  674 --------ECVAQ---MTGHSEAVTGVKFLNDC-------KHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             --------hhhhh---hcCcchheeeeeecccc-------hhheeecCCceEEEEECc
Confidence                    56555   55899999999999999       899999999999999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=177.95  Aligned_cols=208  Identities=18%  Similarity=0.261  Sum_probs=159.2

Q ss_pred             EEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceee-ecc-----ccccccEEEEEEcCCCCEEEEEe
Q 037555           50 HKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAM-GRL-----QSHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~-----~~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      ...+||...++|.+|+|..+ .++++     +.||++++|+++..+.. +.+     .+..-+++.++|++++++||+|.
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~-----s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTC-----SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC  336 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEe-----cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc
Confidence            33468999999999999654 66777     45999999999765432 222     23455789999999999999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      .||.|.+|+......    ......-..|..  .|+++.|+++|++|++-+.|+++++||+++.+.......--...-+-
T Consensus       337 ~DGSIQ~W~~~~~~v----~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~  412 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTV----RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG  412 (641)
T ss_pred             cCCceeeeecCCccc----ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence            999999999754332    222344456766  89999999999999999999999999999876543221211234456


Q ss_pred             EEEEEeeccccCCccEEEEeec------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          201 TALSWVGLDRQKNHGFLAVGME------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      +.++|+|+.     .+|++|..      .|.+.+||..+.             ..+..+.   -....|..+.|+|.-  
T Consensus       413 tdc~FSPd~-----kli~TGtS~~~~~~~g~L~f~d~~t~-------------d~v~ki~---i~~aSvv~~~WhpkL--  469 (641)
T KOG0772|consen  413 TDCCFSPDD-----KLILTGTSAPNGMTAGTLFFFDRMTL-------------DTVYKID---ISTASVVRCLWHPKL--  469 (641)
T ss_pred             CccccCCCc-----eEEEecccccCCCCCceEEEEeccce-------------eeEEEec---CCCceEEEEeecchh--
Confidence            889999998     79998864      578999998876             4444443   247889999999988  


Q ss_pred             CCCcceEEEeeeCCCcEEEe
Q 037555          275 KNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw  294 (298)
                           +.|..++.||.+++|
T Consensus       470 -----NQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  470 -----NQIFAGSGDGTAHVY  484 (641)
T ss_pred             -----hheeeecCCCceEEE
Confidence                 788888889999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=6.4e-25  Score=179.34  Aligned_cols=238  Identities=16%  Similarity=0.245  Sum_probs=185.2

Q ss_pred             cceeeeecCccc--ccccCCCCCcee-eeccCCCcccccccC------CC-----CceEEeccCCCceEEEEEcCCCCEE
Q 037555            6 RETVERHGNDGL--DTLESVPDAVPA-VFTEPPIEDQLAWHT------LW-----PESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         6 ~~~~~~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~~~~------~~-----~~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      .+.|+...++.+  +.+.+|.+-+.. +++.+.+...+..+.      +|     .+..+|++|+..|.|++...++. +
T Consensus        37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~  115 (745)
T KOG0301|consen   37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L  115 (745)
T ss_pred             eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence            344444444443  346677776655 444432222233331      22     35788999999999999888887 9


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++|+.     |.++++|..  +++...+++|+..|.+++.-|++ .+++|+.|.+|++|.-.         ..++.+.+|
T Consensus       116 iSgSW-----D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---------~~l~tf~gH  178 (745)
T KOG0301|consen  116 ISGSW-----DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---------TLLKTFSGH  178 (745)
T ss_pred             Eeccc-----ccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---------chhhhhccc
Confidence            99976     899999987  45666799999999999999987 89999999999999864         357888999


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      .+.|+.+++-++. .|++++.||.|++|++ +++.+.   ...+|...+.++...+.+     ..++++++|+++++|+.
T Consensus       179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~---~~~ghtn~vYsis~~~~~-----~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL---EMHGHTNFVYSISMALSD-----GLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             hhheeeeEEecCC-CeEeecCCceEEEEec-cCceee---eeeccceEEEEEEecCCC-----CeEEEecCCceEEEeec
Confidence            9999999999754 6899999999999999 566666   677899999999966666     69999999999999997


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .               .+...+.   .....|+++.+-+++        -+++|++||.||||..+
T Consensus       249 ~---------------e~~q~I~---lPttsiWsa~~L~Ng--------DIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  249 D---------------ECVQVIT---LPTTSIWSAKVLLNG--------DIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             C---------------ceEEEEe---cCccceEEEEEeeCC--------CEEEeccCceEEEEEec
Confidence            6               3333332   244589999999988        67888999999999753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.1e-27  Score=192.38  Aligned_cols=205  Identities=21%  Similarity=0.416  Sum_probs=185.2

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      +.+..|...|.++..-..++.+++|     +.|..+.+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~G-----g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTG-----GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccC-----CCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee
Confidence            4556789999999987788899999     45889999999877777789999999999999999999999999999999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ||+..       .+.++.+.+|...+..+.|+|-+.+++.|+.|+.+++||++...+..   .+.+|...+..+.|+|+|
T Consensus        97 wDlee-------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen   97 WDLEE-------AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDG  166 (825)
T ss_pred             eehhh-------hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecCCC
Confidence            99997       67788999999999999999999999999999999999999877777   677788999999999999


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                           .+++.|++|..++|||...+             +.+..   +..|...+.++.|+|..       .++++||.|+
T Consensus       167 -----r~v~~g~ed~tvki~d~~ag-------------k~~~e---f~~~e~~v~sle~hp~e-------~Lla~Gs~d~  218 (825)
T KOG0267|consen  167 -----RWVASGGEDNTVKIWDLTAG-------------KLSKE---FKSHEGKVQSLEFHPLE-------VLLAPGSSDR  218 (825)
T ss_pred             -----ceeeccCCcceeeeeccccc-------------ccccc---cccccccccccccCchh-------hhhccCCCCc
Confidence                 79999999999999999877             44444   56799999999999998       8999999999


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      ++++||++
T Consensus       219 tv~f~dle  226 (825)
T KOG0267|consen  219 TVRFWDLE  226 (825)
T ss_pred             eeeeeccc
Confidence            99999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2e-24  Score=160.71  Aligned_cols=209  Identities=17%  Similarity=0.218  Sum_probs=162.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      .+.|.++.|+|.+..|++++.     ||.+++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssW-----DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSW-----DGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEec-----cCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            568999999999888888877     8999999999876666666 999999999986 568999999999999999964


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                      .        ...+..|..+|.++..++....+++|+.|++|++||.+......   .+. ....|.++....       +
T Consensus        86 ~--------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---~~d-~~kkVy~~~v~g-------~  146 (323)
T KOG1036|consen   86 N--------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---TFD-QGKKVYCMDVSG-------N  146 (323)
T ss_pred             c--------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---ccc-cCceEEEEeccC-------C
Confidence            3        44567799999999999988999999999999999999754444   333 345788887766       5


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCC--Ccceeee------------------------------eccCCccc---
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPS--TANIIIR------------------------------FDPFACHV---  260 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~~~~~---  260 (298)
                      .|++|+.+..|.+||+++...........-  +.+++..                              -..+++|.   
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~  226 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE  226 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence            799999999999999997643321100000  0000000                              00133443   


Q ss_pred             ------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          261 ------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       261 ------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            .+|++|+|+|-.       ..|+|||.||.|.+||+.
T Consensus       227 ~~~~~~yPVNai~Fhp~~-------~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  227 KDTEIIYPVNAIAFHPIH-------GTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             CCceEEEEeceeEecccc-------ceEEecCCCceEEEccCc
Confidence                  479999999988       799999999999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=4.3e-25  Score=159.93  Aligned_cols=206  Identities=18%  Similarity=0.247  Sum_probs=171.8

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVAS   73 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~   73 (298)
                      .+.|+.-+|..++.++ |...|..++|+ .+...+.++      ++++      +...+.+|.+.|..+.|....+.+++
T Consensus        83 akvw~a~tgdelhsf~-hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence            4567788999998885 67788999998 556666665      2221      35667899999999999998888888


Q ss_pred             EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      +     .+|++|++||.+++..++++. ...+|+++.++++|.+|.+ ...+.|.+||...       ..+++..+ ...
T Consensus       161 S-----add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaks-------f~~lKs~k-~P~  225 (334)
T KOG0278|consen  161 S-----ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKS-------FGLLKSYK-MPC  225 (334)
T ss_pred             e-----ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccc-------ccceeecc-Ccc
Confidence            8     459999999999999999887 6788999999999976555 4567899999987       55566554 356


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|.+...+|+...++.|+.|..++.||..+++.+...  .++|.++|.|+.|+|++     ...++|++||+|++|.+..
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdG-----E~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDG-----ELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCC-----ceeeccCCCceEEEEEecC
Confidence            7889999999999999999999999999999988731  36899999999999999     7999999999999999876


Q ss_pred             cc
Q 037555          234 NR  235 (298)
Q Consensus       234 ~~  235 (298)
                      .+
T Consensus       299 ~~  300 (334)
T KOG0278|consen  299 GK  300 (334)
T ss_pred             CC
Confidence            54

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.7e-25  Score=169.86  Aligned_cols=248  Identities=12%  Similarity=0.231  Sum_probs=192.1

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCC----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP----ESHKLYGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~   72 (298)
                      .++..+.|+...-+++..++.|.+.|.++.+..  +..+..+     +.|.    +++++.+ ...+..+.-+..+..++
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~Fa  163 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFA  163 (433)
T ss_pred             cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeec-ccccccccccccccccc
Confidence            567788888888888999999998888887774  2222222     3554    5555543 34566777777777888


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++|       ..|.|||.+...++..+.-....|.++.|+|- ..+|++|+.|+.|.+||++...       +++.+. -
T Consensus       164 TcG-------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-------Pl~KVi-~  228 (433)
T KOG0268|consen  164 TCG-------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-------PLKKVI-L  228 (433)
T ss_pred             ccC-------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-------ccceee-e
Confidence            884       47899999888889888877888999999994 4578888899999999999843       333322 1


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      ...-+.++|+|..-.|++++.|..++.||++......  ....+|.+.|.++.|+|.|     .-+++|+.|.+|+||..
T Consensus       229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~--~v~~dhvsAV~dVdfsptG-----~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL--NVHKDHVSAVMDVDFSPTG-----QEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             eccccceecCccccceeeccccccceehhhhhhcccc--hhhcccceeEEEeccCCCc-----chhccccccceEEEeec
Confidence            2345789999988889999999999999999765433  3566899999999999999     78999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +.+.....             +  ....-..|.++.|+.|.       .++++||.|+.|++|.-
T Consensus       302 ~~~~SRdi-------------Y--htkRMq~V~~Vk~S~Ds-------kyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  302 NHGHSRDI-------------Y--HTKRMQHVFCVKYSMDS-------KYIISGSDDGNVRLWKA  344 (433)
T ss_pred             CCCcchhh-------------h--hHhhhheeeEEEEeccc-------cEEEecCCCcceeeeec
Confidence            87633221             1  11234579999999999       89999999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=7.5e-24  Score=176.46  Aligned_cols=278  Identities=14%  Similarity=0.166  Sum_probs=208.8

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ++..+.++..+++.+.++.++...|+++... |.-+.++-+           +.-..+.+|+.-.+.|++++|..||..+
T Consensus       181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~  259 (910)
T KOG1539|consen  181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL  259 (910)
T ss_pred             CCcEEEEEeccCcEEEEecccccceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence            5678899999999999999999999998877 544555444           2334566676556999999999999765


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----------
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI----------  140 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------  140 (298)
                      .+.+    ...|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|..+++|-.+++...+.          
T Consensus       260 las~----~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  260 LASG----RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             EEec----cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            5443    347999999999877776665 7889999999999888999999999988886663221100          


Q ss_pred             --------------------------------------------------------------------------ce----
Q 037555          141 --------------------------------------------------------------------------DY----  142 (298)
Q Consensus       141 --------------------------------------------------------------------------~~----  142 (298)
                                                                                                .+    
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence                                                                                      00    


Q ss_pred             ----------------eee-------EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555          143 ----------------QLI-------ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS  199 (298)
Q Consensus       143 ----------------~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  199 (298)
                                      ...       ..++.....+++++.++.|++.+.|+..|.|-+|++.++-....+..-+.|..+
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~  495 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE  495 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence                            000       000112356889999999999999999999999999998777644333679999


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC-------------------------Ccceeeeec
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS-------------------------TANIIIRFD  254 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------~~~~~~~~~  254 (298)
                      |+.++....+     ..+++++.+|.+++||............+..                         ...+.+...
T Consensus       496 V~gla~D~~n-----~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  496 VTGLAVDGTN-----RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             eeEEEecCCC-----ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            9999999888     7999999999999999987642211111110                         001111223


Q ss_pred             cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++.+|...|++++||||+       ++|++++.|++||+||+.
T Consensus       571 ~f~gh~nritd~~FS~Dg-------rWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDG-------RWLISASMDSTIRTWDLP  606 (910)
T ss_pred             HhhccccceeeeEeCCCC-------cEEEEeecCCcEEEEecc
Confidence            477899999999999999       899999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1e-24  Score=178.15  Aligned_cols=229  Identities=21%  Similarity=0.351  Sum_probs=187.0

Q ss_pred             ccccccCCCCCceeeeccCCCcccccc-----cCCC-------CceEEeccCCCceEE-EEEcC-CCCEEEeEeccCCCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAW-----HTLW-------PESHKLYGHGNELFS-LCCDH-QGKLVASSCKAQSTA   81 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~h~~~v~~-~~~s~-~~~~l~~~~~~~~~~   81 (298)
                      .-+.+.+|...|..++...+. -.+..     .++|       -+...+.+|.+-|.+ +++-+ ++-.+++|+     .
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-----~   79 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-----M   79 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-----c
Confidence            346788999888776655332 11111     1344       345678888888887 88875 445688884     5


Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      |..|.+|.....+++..+.+|...|.++....++. +++||.|.++++|....         +...+.+|...|++++.-
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASL  149 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeec
Confidence            99999999999999999999999999999887776 99999999999998754         455589999999999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      |++ .+++|+.|.+|++|.-  ++.++   ++.+|..-|+.+++-+++      .+++++.||.|++|++. +       
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~---tf~gHtD~VRgL~vl~~~------~flScsNDg~Ir~w~~~-g-------  209 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLK---TFSGHTDCVRGLAVLDDS------HFLSCSNDGSIRLWDLD-G-------  209 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhh---hhccchhheeeeEEecCC------CeEeecCCceEEEEecc-C-------
Confidence            987 8999999999999976  45555   888999999999999985      58999999999999994 3       


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                            .++..   +.+|..-|.++...+++       ..++++|+|++++||+.
T Consensus       210 ------e~l~~---~~ghtn~vYsis~~~~~-------~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  210 ------EVLLE---MHGHTNFVYSISMALSD-------GLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             ------ceeee---eeccceEEEEEEecCCC-------CeEEEecCCceEEEeec
Confidence                  44444   55799999999977776       79999999999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6.7e-25  Score=171.26  Aligned_cols=204  Identities=19%  Similarity=0.313  Sum_probs=175.3

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee----e-------------cc-ccccccEEEEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM----G-------------RL-QSHSLTVTQIR  110 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~----~-------------~~-~~~~~~v~~~~  110 (298)
                      +..+..|..+|.+++++|+.++.+++++     +++|.-|++.+++..    .             .- ..|...+.+++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask-----~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a  209 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASK-----DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA  209 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCC-----CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence            5667789999999999999999999965     889999998776522    1             11 26888999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555          111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      .++|+++|++|+.|..|.||+.++       ...++.+.+|.+.|.+++|-...+.+++++.|+.|++|++.....+.  
T Consensus       210 vS~Dgkylatgg~d~~v~Iw~~~t-------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve--  280 (479)
T KOG0299|consen  210 VSSDGKYLATGGRDRHVQIWDCDT-------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE--  280 (479)
T ss_pred             EcCCCcEEEecCCCceEEEecCcc-------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH--
Confidence            999999999999999999999998       66788899999999999999888899999999999999999888777  


Q ss_pred             eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                       ++.+|++.|.++.....+     ..+-+|+.|+++++|++....            +.+     +.+|.+.+-+++|-.
T Consensus       281 -tlyGHqd~v~~IdaL~re-----R~vtVGgrDrT~rlwKi~ees------------qli-----frg~~~sidcv~~In  337 (479)
T KOG0299|consen  281 -TLYGHQDGVLGIDALSRE-----RCVTVGGRDRTVRLWKIPEES------------QLI-----FRGGEGSIDCVAFIN  337 (479)
T ss_pred             -HHhCCccceeeechhccc-----ceEEeccccceeEEEeccccc------------eee-----eeCCCCCeeeEEEec
Confidence             778999999999888776     567777799999999995431            111     447888999999988


Q ss_pred             CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          271 HEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.        .+++|+.||.|.+|++.
T Consensus       338 ~~--------HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  338 DE--------HFVSGSDNGSIALWSLL  356 (479)
T ss_pred             cc--------ceeeccCCceEEEeeec
Confidence            75        89999999999999873

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.1e-25  Score=168.59  Aligned_cols=205  Identities=21%  Similarity=0.280  Sum_probs=167.8

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD  124 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  124 (298)
                      +.+.+..|+++|.=+.||++|++||++++     |.+..+|.+...   +...++.+|..+|.-+.|+||.+++++|+.|
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSk-----D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASK-----DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccC-----CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            46778899999999999999999999965     888999987543   3467788999999999999999999999999


Q ss_pred             CeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-CceEE
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-SSVTA  202 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~v~~  202 (298)
                      ..+.+||+.++.       ....+. ++...+.+++|.||+..|++|+.|+.+..||+.... ..   ...+.. ..|.+
T Consensus       291 e~~~lwDv~tgd-------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~---~W~gvr~~~v~d  359 (519)
T KOG0293|consen  291 EVLSLWDVDTGD-------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LG---NWEGVRDPKVHD  359 (519)
T ss_pred             HheeeccCCcch-------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hh---cccccccceeEE
Confidence            999999999853       222221 245778999999999999999999999999998543 23   333322 45899


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      ++..++|     .++++.+.|..|++|+..+..             ....+    .-..+|++++.|.++       .++
T Consensus       360 lait~Dg-----k~vl~v~~d~~i~l~~~e~~~-------------dr~li----se~~~its~~iS~d~-------k~~  410 (519)
T KOG0293|consen  360 LAITYDG-----KYVLLVTVDKKIRLYNREARV-------------DRGLI----SEEQPITSFSISKDG-------KLA  410 (519)
T ss_pred             EEEcCCC-----cEEEEEecccceeeechhhhh-------------hhccc----cccCceeEEEEcCCC-------cEE
Confidence            9999999     788888899999999987642             11111    246789999999999       788


Q ss_pred             EeeeCCCcEEEeEec
Q 037555          283 ASCGADNTVRVFQVN  297 (298)
Q Consensus       283 ~s~~~d~~i~iw~~~  297 (298)
                      ++.=.+..+++||+.
T Consensus       411 LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  411 LVNLQDQEIHLWDLE  425 (519)
T ss_pred             EEEcccCeeEEeecc
Confidence            888899999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.1e-23  Score=153.83  Aligned_cols=222  Identities=17%  Similarity=0.342  Sum_probs=170.1

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ  126 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~  126 (298)
                      .+|.+-|.++.|.+.|+.+|+|+     .|.+|+|||..+    ..+....+.|.+.|..+.|.+  -|+.+++++.|++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             cCCcceeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            47999999999999999999995     499999999643    345566789999999999976  5889999999999


Q ss_pred             EEEEEeccCCCC--ccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCccee------eeee----
Q 037555          127 FSVFAIQRTGTG--EIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVK------QILA----  192 (298)
Q Consensus       127 i~iwd~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~------~~~~----  192 (298)
                      +.||.-......  ...+.....+......|+.+.|.|  -|-.|++++.||.||||+......+.      ++..    
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            999986422211  123666777888889999999999  46789999999999999876533221      1111    


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecC-----CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMES-----GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      ...+..+..|+.|+|...  ...+|+.|+.+     +.++||......            +....+.++.+|..+|++|+
T Consensus       165 p~~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~------------rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENG------------RKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             cccccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCc------------ceeeeehhcCCCCCcceeee
Confidence            113456678999997642  23688888876     589999887552            34455566778999999999


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |.|+-   ...-.+||+++.|| |+||.+.
T Consensus       231 wAPn~---Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  231 WAPNI---GRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             ecccc---CCceeeEEEeecCc-EEEEEEe
Confidence            99974   11236899999999 9999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.8e-24  Score=165.85  Aligned_cols=206  Identities=20%  Similarity=0.343  Sum_probs=163.9

Q ss_pred             ccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 037555           53 YGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw  130 (298)
                      .+|++.|.+++|+..- ..||+|     +.|.+|++||+.++++..++..|...|.++.|+| ....|++|+.|+++.+.
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSg-----saD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASG-----SADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             ccchHHHHHHHhccccceeEEec-----CCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence            3799999999999864 467777     5699999999999999999999999999999999 56799999999999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeec
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      |.+.....      -..+ ...+.|-.++|.|.. ..++++..||+|+-+|+|.. +++.   +++.|..+|.++++++.
T Consensus       315 D~R~~~~s------~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw---t~~AHd~~ISgl~~n~~  384 (463)
T KOG0270|consen  315 DCRDPSNS------GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW---TLKAHDDEISGLSVNIQ  384 (463)
T ss_pred             eccCcccc------CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee---EEEeccCCcceEEecCC
Confidence            99964322      1122 245778999999954 67788889999999999987 4444   77889999999999998


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                      .+    .++++++.|+.|++|++........         ..+.+     .-+...++++.|+-.      ..|+.||..
T Consensus       385 ~p----~~l~t~s~d~~Vklw~~~~~~~~~v---------~~~~~-----~~~rl~c~~~~~~~a------~~la~GG~k  440 (463)
T KOG0270|consen  385 TP----GLLSTASTDKVVKLWKFDVDSPKSV---------KEHSF-----KLGRLHCFALDPDVA------FTLAFGGEK  440 (463)
T ss_pred             CC----cceeeccccceEEEEeecCCCCccc---------ccccc-----cccceeecccCCCcc------eEEEecCcc
Confidence            76    8999999999999999976532110         00111     112366777777763      688999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      +.++|||+.
T Consensus       441 ~~~~vwd~~  449 (463)
T KOG0270|consen  441 AVLRVWDIF  449 (463)
T ss_pred             ceEEEeecc
Confidence            999999974

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.1e-23  Score=155.31  Aligned_cols=202  Identities=15%  Similarity=0.267  Sum_probs=150.2

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      |-.+-...++.+|+++     +.|..|.+|++. |+.+..+......-+..+.+|+|+++++++.--.+++|.+--...+
T Consensus       190 ~i~iGiA~~~k~imsa-----s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  190 IINIGIAGNAKYIMSA-----SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             eEEEeecCCceEEEEe-----cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            3334444445556666     458899999998 8888888776677788999999999999999999999998655443


Q ss_pred             cc-ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC----Ccceeeeee----cCCCCCceEEEEEeecc
Q 037555          139 EI-DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN----KSSVKQILA----LPPFNSSVTALSWVGLD  209 (298)
Q Consensus       139 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~----~~~~~~~v~~~~~~~~~  209 (298)
                      .. ....+..+++|...|..++|+++...+++.+.||++++||+.-    ++....+..    +....+....+.++|.+
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g  343 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG  343 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence            31 2345678899999999999999999999999999999999863    111111111    12233445689999998


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                           ..|+.+. ...|++|..+.++             ....+.  ..|...|.+|+|+++|       .+++||| |.
T Consensus       344 -----~~lA~s~-gs~l~~~~se~g~-------------~~~~~e--~~h~~~Is~is~~~~g-------~~~atcG-dr  394 (420)
T KOG2096|consen  344 -----DSLAVSF-GSDLKVFASEDGK-------------DYPELE--DIHSTTISSISYSSDG-------KYIATCG-DR  394 (420)
T ss_pred             -----cEEEeec-CCceEEEEcccCc-------------cchhHH--HhhcCceeeEEecCCC-------cEEeeec-ce
Confidence                 5666554 5679999988763             222222  2589999999999999       8999998 66


Q ss_pred             cEEEeE
Q 037555          290 TVRVFQ  295 (298)
Q Consensus       290 ~i~iw~  295 (298)
                      .+++..
T Consensus       395 ~vrv~~  400 (420)
T KOG2096|consen  395 YVRVIR  400 (420)
T ss_pred             eeeeec
Confidence            777653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.2e-23  Score=154.82  Aligned_cols=225  Identities=15%  Similarity=0.236  Sum_probs=166.1

Q ss_pred             cccCCCCCceeeeccCCCcccccccCCCC-------ce-------EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWHTLWP-------ES-------HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      .-....+.|..+.|+| ..+.++.+.-|+       ..       +....|.++|.+++|+.+|..+++|+     .|+.
T Consensus        22 v~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-----~Dk~   95 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-----CDKQ   95 (347)
T ss_pred             cCCCcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-----cCCc
Confidence            3345567899999996 444555443343       21       22346899999999999999999995     5999


Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCC--EEEEEeCCCeEEEEEeccCCCCcc----------------------
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEI----------------------  140 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~----------------------  140 (298)
                      +++||+.+++. .++..|..+|..+.|-+...  .|++|+.|.+|++||.+.......                      
T Consensus        96 ~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata  174 (347)
T KOG0647|consen   96 AKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA  174 (347)
T ss_pred             eEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence            99999999854 55777999999999988655  899999999999999986542110                      


Q ss_pred             -ceeeeEEe-------ec----cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---------Cc
Q 037555          141 -DYQLIARQ-------EA----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---------SS  199 (298)
Q Consensus       141 -~~~~~~~~-------~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---------~~  199 (298)
                       ..-.+..+       +.    -.-.+++++..++...++.|+-+|++.+..+..+.+...+ .+..|.         ..
T Consensus       175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-tFkCHR~~~~~~~~VYa  253 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-TFKCHRSTNSVNDDVYA  253 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-eEEEeccCCCCCCceEE
Confidence             00001111       11    1235789999998888899999999999999876332211 344443         25


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      |.+++|+|..     ..|++.+.||.+.+||-...             ..   +.....|..+|++.+|+.+|
T Consensus       254 VNsi~FhP~h-----gtlvTaGsDGtf~FWDkdar-------------~k---Lk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  254 VNSIAFHPVH-----GTLVTAGSDGTFSFWDKDAR-------------TK---LKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             ecceEeeccc-----ceEEEecCCceEEEecchhh-------------hh---hhccCcCCCccceeEecCCC
Confidence            7899999987     79999999999999998654             22   22255699999999999999

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=164.25  Aligned_cols=212  Identities=17%  Similarity=0.193  Sum_probs=166.3

Q ss_pred             EEeccCCCceEEEEEcCCCC--EEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcC-CCCEEEEEe
Q 037555           50 HKLYGHGNELFSLCCDHQGK--LVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSH-DDNLLLSVS  122 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~--~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  122 (298)
                      ...+-+.+.|++++|+|...  ++|+|     +..|+|-+||+.+.+    -+..+..|..+|.++.|+| +...+++.+
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~G-----dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVG-----DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEc-----cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            44556889999999999654  66777     458999999995332    2345778999999999999 556899999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .||+|++-|++...     ...+..+......+..+.|+.+...++.+..=|...+||+++......  .+..|...|++
T Consensus       255 yDGtiR~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--~~~lh~kKI~s  327 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--NLRLHKKKITS  327 (498)
T ss_pred             cCceeeeeeecchh-----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch--hhhhhhcccce
Confidence            99999999998643     223333333455677888888888888888878999999998775321  44457779999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      ++++|..+    .+|++++.|++.+|||++.-.....         +  .+. ...|...|.+..|||.+       ..|
T Consensus       328 v~~NP~~p----~~laT~s~D~T~kIWD~R~l~~K~s---------p--~ls-t~~HrrsV~sAyFSPs~-------gtl  384 (498)
T KOG4328|consen  328 VALNPVCP----WFLATASLDQTAKIWDLRQLRGKAS---------P--FLS-TLPHRRSVNSAYFSPSG-------GTL  384 (498)
T ss_pred             eecCCCCc----hheeecccCcceeeeehhhhcCCCC---------c--cee-cccccceeeeeEEcCCC-------Cce
Confidence            99999987    8999999999999999987533211         1  122 34599999999999998       569


Q ss_pred             EeeeCCCcEEEeEe
Q 037555          283 ASCGADNTVRVFQV  296 (298)
Q Consensus       283 ~s~~~d~~i~iw~~  296 (298)
                      +|.+.|+.|+|||.
T Consensus       385 ~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDS  398 (498)
T ss_pred             EeeccCCceEEeec
Confidence            99999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-23  Score=170.09  Aligned_cols=193  Identities=22%  Similarity=0.324  Sum_probs=162.1

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      .-++|+ ....||+|.      ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||...     
T Consensus       181 nlldWs-s~n~laVal------g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-----  248 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL------GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-----  248 (484)
T ss_pred             hHhhcc-cCCeEEEEe------cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-----
Confidence            345677 455677773      46899999998886665555589999999999999999999999999999987     


Q ss_pred             cceeeeEEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          140 IDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       140 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                        .+.+..+.. |...|-+++|.  +..+.+|+.|+.|..+|++..+....  .+.+|...|..+.|++++     .+++
T Consensus       249 --~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~-----~~lA  317 (484)
T KOG0305|consen  249 --QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDG-----NQLA  317 (484)
T ss_pred             --ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCC-----Ceec
Confidence              445666666 89999999998  77899999999999999998887663  377899999999999999     8999


Q ss_pred             EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee--CCCcEEEeEe
Q 037555          219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG--ADNTVRVFQV  296 (298)
Q Consensus       219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iw~~  296 (298)
                      +|+.|+.+.|||....             .+...   +..|.+.|..++|+|-..      .+||+|+  .|++|++||.
T Consensus       318 SGgnDN~~~Iwd~~~~-------------~p~~~---~~~H~aAVKA~awcP~q~------~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGLSP-------------EPKFT---FTEHTAAVKALAWCPWQS------GLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             cCCCccceEeccCCCc-------------cccEE---EeccceeeeEeeeCCCcc------CceEEcCCCcccEEEEEEc
Confidence            9999999999999554             34444   345999999999999764      7899886  6999999997


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       376 ~  376 (484)
T KOG0305|consen  376 N  376 (484)
T ss_pred             C
Confidence            4

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.9e-23  Score=172.09  Aligned_cols=236  Identities=15%  Similarity=0.240  Sum_probs=186.9

Q ss_pred             cCCCCCceeeeccCCCccccccc------CCCCc------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH------TLWPE------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW   88 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw   88 (298)
                      ..|.+....+++. |.++++.+.      +.|..      -.++.-+...|.+++..  +.+|+++     ..+++|.+|
T Consensus        10 yaht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~-----s~~~tv~~y   81 (933)
T KOG1274|consen   10 YAHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTG-----SEQNTVLRY   81 (933)
T ss_pred             hhccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEe-----eccceEEEe
Confidence            4677777778887 555566655      33422      12222367778888764  4488888     459999999


Q ss_pred             EcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555           89 EVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA  168 (298)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (298)
                      .+.+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.++..       ....+.+.+|..+|.++.|+|.+++||
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-------~s~~~~lrgh~apVl~l~~~p~~~fLA  154 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-------SSQEKVLRGHDAPVLQLSYDPKGNFLA  154 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-------cchheeecccCCceeeeeEcCCCCEEE
Confidence            9999887767777888999999999999999999999999999987       556788899999999999999999999


Q ss_pred             EeeCCCeEEEEEccCCcceeeeeecCCC-----CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555          169 TGSRDKTVKIWAVENKSSVKQILALPPF-----NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA  243 (298)
Q Consensus       169 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  243 (298)
                      +.+-||.|++||+.++.....+..+...     ...+..++|+|.+     ..++....|+.|++|+....         
T Consensus       155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-----g~la~~~~d~~Vkvy~r~~w---------  220 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-----GTLAVPPVDNTVKVYSRKGW---------  220 (933)
T ss_pred             EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-----CeEEeeccCCeEEEEccCCc---------
Confidence            9999999999999988776643332211     3456789999998     57777788999999999876         


Q ss_pred             CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          .....+. ...+...+..+.|+|+|       .|||+++.||.|.|||.+
T Consensus       221 ----e~~f~Lr-~~~~ss~~~~~~wsPnG-------~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  221 ----ELQFKLR-DKLSSSKFSDLQWSPNG-------KYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ----eeheeec-ccccccceEEEEEcCCC-------cEEeeeccCCcEEEEecc
Confidence                3333333 22345559999999999       899999999999999975

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=6.4e-23  Score=151.65  Aligned_cols=253  Identities=17%  Similarity=0.217  Sum_probs=181.8

Q ss_pred             ccccCCCCCceeeeccCCCccccccc-------------CCCC--------------ceEEec-cCCCceEEEEEcCCCC
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH-------------TLWP--------------ESHKLY-GHGNELFSLCCDHQGK   69 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~--------------~~~~~~-~h~~~v~~~~~s~~~~   69 (298)
                      .+|..|.+.|..++..|.+...+++.             .+|.              ++..|. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            34566777787777775554444332             3452              233333 4556899999999999


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCcee-eecc-----ccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccc
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKA-MGRL-----QSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (298)
                      .+++-      .|..|.+|+++.+.. +..+     ..+....++-+|+|  +++.+++.+ |+++..||+++.      
T Consensus       137 klasm------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~------  203 (370)
T KOG1007|consen  137 KLASM------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM------  203 (370)
T ss_pred             eeEEe------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch------
Confidence            99987      388999999987654 3322     23566788899999  777776655 899999999974      


Q ss_pred             eeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG  220 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g  220 (298)
                      .+....-..|...|..+.|+|+. .+|++|++||.|++||.|..+.  .+..+++|...|.++.|+|...    ++|++|
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hd----qLiLs~  277 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHD----QLILSG  277 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccc----eEEEec
Confidence            23344456788899999999965 5788999999999999987553  3347889999999999999875    899999


Q ss_pred             ecCCcEEEEEeeecccccccC--------CCCCCcce---e--eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          221 MESGVIELWSISVNRTNDVST--------PAPSTANI---I--IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       221 ~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      +.|..|.+|....-.......        ......+.   +  ..+..+..|...|.+++|+...+      ..+++-+.
T Consensus       278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP------WiFASLSY  351 (370)
T KOG1007|consen  278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP------WIFASLSY  351 (370)
T ss_pred             CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC------eeEEEecc
Confidence            999999999876532111100        00000011   1  11233567999999999998764      78899999


Q ss_pred             CCcEEEeE
Q 037555          288 DNTVRVFQ  295 (298)
Q Consensus       288 d~~i~iw~  295 (298)
                      ||.+.|=.
T Consensus       352 DGRviIs~  359 (370)
T KOG1007|consen  352 DGRVIISS  359 (370)
T ss_pred             CceEEeec
Confidence            99987744

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.91  E-value=7.6e-23  Score=151.38  Aligned_cols=209  Identities=19%  Similarity=0.323  Sum_probs=165.7

Q ss_pred             ccCCCceEEEEEcCCC-----CEEEeEeccCCCCceEEEEEEcCC--cee--eecc-----ccccccEEEEEEcC-CCCE
Q 037555           53 YGHGNELFSLCCDHQG-----KLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRL-----QSHSLTVTQIRFSH-DDNL  117 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~-----~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~  117 (298)
                      ..|..+++.+.|.|+.     .+||++       +-.+++|.+..  .+.  ...+     ..+..+++++.|+. +.++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~  165 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL  165 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-------cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence            3689999999999976     367777       45799999873  221  1111     23677999999987 7789


Q ss_pred             EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555          118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPF  196 (298)
Q Consensus       118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  196 (298)
                      |.+++-|-+..|||++.+..    ......+-.|..+|..++|...+ +.||+++.||.||+||+|..+....+..-+..
T Consensus       166 igtSSiDTTCTiWdie~~~~----~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVS----GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             eEeecccCeEEEEEEeeccc----cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            99999999999999998522    34566778999999999999854 68999999999999999987765544343333


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      ..+...++|++..+    +++++-..| ..|.|.|++...               ..+..+.+|.+.|+.++|.|...  
T Consensus       242 ~~pLlRLswnkqDp----nymATf~~dS~~V~iLDiR~P~---------------tpva~L~~H~a~VNgIaWaPhS~--  300 (364)
T KOG0290|consen  242 STPLLRLSWNKQDP----NYMATFAMDSNKVVILDIRVPC---------------TPVARLRNHQASVNGIAWAPHSS--  300 (364)
T ss_pred             CCcceeeccCcCCc----hHHhhhhcCCceEEEEEecCCC---------------cceehhhcCcccccceEecCCCC--
Confidence            56788999999886    788876654 579999998542               23334778999999999999875  


Q ss_pred             CCcceEEEeeeCCCcEEEeEec
Q 037555          276 NSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          ..|+|||.|..+.+||++
T Consensus       301 ----~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  301 ----SHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ----ceeeecCCcceEEEEecc
Confidence                899999999999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.3e-23  Score=163.44  Aligned_cols=199  Identities=17%  Similarity=0.292  Sum_probs=159.6

Q ss_pred             eEEEEEcC-------CCCEEEeEeccCCCCceEEEEEEcCCcee---------------------eeccccccccEEEEE
Q 037555           59 LFSLCCDH-------QGKLVASSCKAQSTAAAEIWLWEVGSWKA---------------------MGRLQSHSLTVTQIR  110 (298)
Q Consensus        59 v~~~~~s~-------~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---------------------~~~~~~~~~~v~~~~  110 (298)
                      ..|++|..       .|+++|.|.     .+..|.|||+.=...                     -..-.+|+..|.++.
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls  250 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS  250 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence            45777743       367999995     488999999852110                     011236899999999


Q ss_pred             EcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCccee
Q 037555          111 FSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       111 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      |+.. .+.|++||.|.+|++||+.+       .++...+..|...|.++.|+| ....|++|+.|++|.+.|.|......
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~-------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~  323 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDT-------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG  323 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCC-------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence            9874 46899999999999999998       667778888999999999999 55899999999999999999643332


Q ss_pred             eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555          189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW  268 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  268 (298)
                      .  .++ ..+.|-.++|.|...    ..++++..||.|+-+|+|+..            +++..   ..+|..+|.+|++
T Consensus       324 ~--~wk-~~g~VEkv~w~~~se----~~f~~~tddG~v~~~D~R~~~------------~~vwt---~~AHd~~ISgl~~  381 (463)
T KOG0270|consen  324 K--EWK-FDGEVEKVAWDPHSE----NSFFVSTDDGTVYYFDIRNPG------------KPVWT---LKAHDDEISGLSV  381 (463)
T ss_pred             c--eEE-eccceEEEEecCCCc----eeEEEecCCceEEeeecCCCC------------CceeE---EEeccCCcceEEe
Confidence            1  222 567899999999886    788899999999999999753            44444   4579999999999


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++..+      .+|+|++.|+.|++|++.
T Consensus       382 n~~~p------~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  382 NIQTP------GLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             cCCCC------cceeeccccceEEEEeec
Confidence            99875      899999999999999985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.7e-23  Score=165.51  Aligned_cols=230  Identities=19%  Similarity=0.279  Sum_probs=182.9

Q ss_pred             CCCCCceeeeccCCCccccccc-----CCCCc--------eEEec--cCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH-----TLWPE--------SHKLY--GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~--~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      .|...|..+..+.+. .++.++     ++|+.        +..|.  .-.+-|.++...|||+.|++|+     +-.++.
T Consensus       417 ~HGEvVcAvtIS~~t-rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG-----eastls  490 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPT-RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG-----EASTLS  490 (705)
T ss_pred             ccCcEEEEEEecCCc-ceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc-----ccceee
Confidence            455566666665443 333333     46642        22222  2345689999999999999994     578999


Q ss_pred             EEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555           87 LWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG  164 (298)
Q Consensus        87 vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (298)
                      |||+....  ....+......+.+++.+||.+..+++..||.|.|||+.+       ...++.+.+|.+.+.||.++++|
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-------q~~VrqfqGhtDGascIdis~dG  563 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASCIDISKDG  563 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-------ceeeecccCCCCCceeEEecCCC
Confidence            99996543  3344555556788999999999999999999999999998       67899999999999999999999


Q ss_pred             CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555          165 HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP  244 (298)
Q Consensus       165 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  244 (298)
                      ..|-+|+-|++||.||+++++.+.   .. ...+.|.++-.+|.+     .+++.|.+.+.+.|-......         
T Consensus       564 tklWTGGlDntvRcWDlregrqlq---qh-dF~SQIfSLg~cP~~-----dWlavGMens~vevlh~skp~---------  625 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREGRQLQ---QH-DFSSQIFSLGYCPTG-----DWLAVGMENSNVEVLHTSKPE---------  625 (705)
T ss_pred             ceeecCCCccceeehhhhhhhhhh---hh-hhhhhheecccCCCc-----cceeeecccCcEEEEecCCcc---------
Confidence            999999999999999999988765   33 366889999999999     899999999998887765431         


Q ss_pred             CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          245 STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           -..   +..|...|.++.|.+-|       .++++.|.|+.+..|...
T Consensus       626 -----kyq---lhlheScVLSlKFa~cG-------kwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  626 -----KYQ---LHLHESCVLSLKFAYCG-------KWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             -----cee---ecccccEEEEEEecccC-------ceeeecCchhhhhhccCc
Confidence                 112   44599999999999999       899999999999999753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.4e-22  Score=150.42  Aligned_cols=255  Identities=15%  Similarity=0.206  Sum_probs=188.0

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCCc--------------------eEEeccCCCceEEEEEcC-CCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE--------------------SHKLYGHGNELFSLCCDH-QGK   69 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~--------------------~~~~~~h~~~v~~~~~s~-~~~   69 (298)
                      ......|.+.|..+...+-.+..+.++      .+|+.                    ...-.+|+..|.++.|-| |..
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            344456778888888887777666665      23321                    111247888999999998 445


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      .+.+++     -|.+++|||.++.+....|. .++.|.+-+|+|   ...++++|..+-.|++.|+..       +....
T Consensus       116 mFtssS-----FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-------Gs~sH  182 (397)
T KOG4283|consen  116 MFTSSS-----FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-------GSFSH  182 (397)
T ss_pred             eeeccc-----ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-------Cccee
Confidence            666664     49999999999998888887 788899999998   345889999999999999998       66788


Q ss_pred             EeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCc-c-----------eeeeeecCCCCCceEEEEEeeccccCC
Q 037555          147 RQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKS-S-----------VKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .+.+|.+.|.++.|+|... .|++|+.||.|++||++... +           ...+..-..|.+.+..++|..++    
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~----  258 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA----  258 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc----
Confidence            9999999999999999765 57889999999999998641 1           11122234577889999999999    


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCC-----------------------cceee--------eeccCCcccce
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPST-----------------------ANIII--------RFDPFACHVAA  262 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~~~--------~~~~~~~~~~~  262 (298)
                       .++++.+.|..+++|+..+++.......+...                       ...+.        .+..+..|...
T Consensus       259 -~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~  337 (397)
T KOG4283|consen  259 -RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR  337 (397)
T ss_pred             -hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence             79999999999999999887543221111000                       00000        01114457777


Q ss_pred             EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      |.+..+.|+-       ..+.++..|+.|..|-.
T Consensus       338 i~c~~~~~~f-------q~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  338 INCAAYRPDF-------EQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeEEeecCch-------hhhhccccCCccccccc
Confidence            8888888888       78889999999988854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.1e-22  Score=162.91  Aligned_cols=220  Identities=14%  Similarity=0.228  Sum_probs=173.7

Q ss_pred             CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--------ceeeeccccccccEEEEEEcCCCC
Q 037555           45 LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--------WKAMGRLQSHSLTVTQIRFSHDDN  116 (298)
Q Consensus        45 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~  116 (298)
                      .|....++..|.+.|++++|.|....|+++     ++|+.|++|+++.        -+++.+|++|.++|.|+++.+++.
T Consensus       283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~-----sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~  357 (577)
T KOG0642|consen  283 KWNIKFTLRSHDDCIRALAFHPSEPVLITA-----SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE  357 (577)
T ss_pred             ecceeeeeecchhhhhhhhcCCCCCeEEEe-----ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce
Confidence            476677888999999999999999999999     5699999999932        256778999999999999999999


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCcc---ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce--e---
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEI---DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV--K---  188 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~---  188 (298)
                      .+++|+.||+|+.|++........   .......+.+|.+.|+.+++++....|++++.||+++.|+.......  .   
T Consensus       358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~  437 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK  437 (577)
T ss_pred             EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc
Confidence            999999999999998763221111   12345677899999999999999999999999999999988654330  0   


Q ss_pred             ------------------------------------eeeecC-------CCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          189 ------------------------------------QILALP-------PFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       189 ------------------------------------~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                                                          .+..+.       .....+.-+.++|..     .+.+++.+|+.
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-----~~~~~~hed~~  512 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-----DITFTAHEDRS  512 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-----CeeEecccCCc
Confidence                                                000000       001224455556655     68999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+++|..++             ..+..   ...|...++++++.|++       .+|++++.||.+++|.+.
T Consensus       513 Ir~~dn~~~-------------~~l~s---~~a~~~svtslai~~ng-------~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  513 IRFFDNKTG-------------KILHS---MVAHKDSVTSLAIDPNG-------PYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             eeccccccc-------------ccchh---eeeccceecceeecCCC-------ceEEeecCCceeehhhcc
Confidence            999999887             33333   45699999999999999       899999999999999874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=146.57  Aligned_cols=197  Identities=15%  Similarity=0.286  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      -.|+.|++.|.+||+|+.     +|.|.|||+.+....+.+.+|..+|.+++|++||++|++++.|..|.+||+..    
T Consensus        26 a~~~~Fs~~G~~lAvGc~-----nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~----   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA-----NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK----   96 (405)
T ss_pred             cceEEeccCcceeeeecc-----CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC----
Confidence            789999999999999976     99999999999998888999999999999999999999999999999999998    


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecC---CCCCceEEEEEeeccccCCc
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~  214 (298)
                         +.+++.+. .+.+|+.+.|+|.. +.+++.--+..-.+-++.......  ....   ..+....+..|.+.+     
T Consensus        97 ---gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~--Lp~d~d~dln~sas~~~fdr~g-----  165 (405)
T KOG1273|consen   97 ---GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV--LPKDDDGDLNSSASHGVFDRRG-----  165 (405)
T ss_pred             ---CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee--ccCCCccccccccccccccCCC-----
Confidence               44555555 57899999999954 444444334444455554422111  0111   011122334577777     


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      +++++|...|.+.++|..+.             +++..+...  ....|..+.++..+       ..|+.-+.|..||.|
T Consensus       166 ~yIitGtsKGkllv~~a~t~-------------e~vas~rit--s~~~IK~I~~s~~g-------~~liiNtsDRvIR~y  223 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETL-------------ECVASFRIT--SVQAIKQIIVSRKG-------RFLIINTSDRVIRTY  223 (405)
T ss_pred             CEEEEecCcceEEEEecchh-------------eeeeeeeec--hheeeeEEEEeccC-------cEEEEecCCceEEEE
Confidence            89999999999999999887             555554321  24788999999999       899999999999999


Q ss_pred             Eec
Q 037555          295 QVN  297 (298)
Q Consensus       295 ~~~  297 (298)
                      +++
T Consensus       224 e~~  226 (405)
T KOG1273|consen  224 EIS  226 (405)
T ss_pred             ehh
Confidence            875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=6.7e-22  Score=160.52  Aligned_cols=232  Identities=17%  Similarity=0.262  Sum_probs=162.7

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcCC-CCEEEEEeCCCe
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHD-DNLLLSVSRDRQ  126 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  126 (298)
                      .....|...|..+.|.|....|++++     .|.++++||+...+.+..  +.+|...|.+++|.|. ...|++|+.||.
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~  168 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE  168 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc
Confidence            44457999999999999767788884     489999999999888766  8899999999999994 568999999999


Q ss_pred             EEEEEeccCCCCcc--------------------ceeeeEEeeccCCceEE---EEEccCCCEEEEeeC-CCeEEEEEcc
Q 037555          127 FSVFAIQRTGTGEI--------------------DYQLIARQEAHKRIIWS---CSWNPFGHEFATGSR-DKTVKIWAVE  182 (298)
Q Consensus       127 i~iwd~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~wd~~  182 (298)
                      |.|||++.......                    ..+.+...+.+...|.+   +.+..|...||+++. |+.|++||++
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            99999986441100                    01112222344445555   556668889999887 9999999999


Q ss_pred             CCcceeeee-----ecCCC---CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC--CC---------
Q 037555          183 NKSSVKQIL-----ALPPF---NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST--PA---------  243 (298)
Q Consensus       183 ~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~---------  243 (298)
                      .........     .+.-+   ...+.++.....|     .+|++.+.|+.|++|++..........  ..         
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks  323 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS  323 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCC-----CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence            755432111     11112   2346777777777     678887889999999998643211100  00         


Q ss_pred             ---CC----------Cc-------ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          244 ---PS----------TA-------NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       244 ---~~----------~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         +.          ..       .+......+.+|...|++++|.|...      .-++||+.|..+++|++.
T Consensus       324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~------t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT------TPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC------CCceeeccCcceEEEecc
Confidence               00          00       00111112568999999999999764      578899999999999973

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.9e-21  Score=144.99  Aligned_cols=242  Identities=13%  Similarity=0.177  Sum_probs=178.9

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCC----------ceEEeccCCCceEEEEEcCCCCEE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP----------ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      |++.++.++.+..+....+ .|..++...+|.+  +..+.++.+-.          ....+..|..+|.|+.+++....+
T Consensus        33 WDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~v  109 (323)
T KOG1036|consen   33 WDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCV  109 (323)
T ss_pred             ccCcEEEEeccchhhhhhe-ecCCceeeeeccC--CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeE
Confidence            9999999999988554444 5678888888885  33334442222          234456799999999999988899


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++|+.     |++|++||.+.......+. ....|.++..  .++.|++|+.+..+.+||++.....     .......-
T Consensus       110 IsgsW-----D~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~-----~q~reS~l  176 (323)
T KOG1036|consen  110 ISGSW-----DKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP-----FQRRESSL  176 (323)
T ss_pred             EEccc-----CccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccch-----hhhccccc
Confidence            99977     8999999998655555555 3447888776  5779999999999999999974321     11122234


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCC---------CceEEEEEeeccccCCccEEEEee
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFN---------SSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      +-.+.++++.|++.-++.++-||+|.+=.++..+.. .....+..|.         .+|++|+|+|..     ..|+||+
T Consensus       177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-----~tfaTgG  251 (323)
T KOG1036|consen  177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-----GTFATGG  251 (323)
T ss_pred             eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-----ceEEecC
Confidence            567899999998888999999999988766654211 1111333332         369999999997     7999999


Q ss_pred             cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      .||.|.+||+.+.             +.+..+   ......|.+++|+.+|       ..||.++.
T Consensus       252 sDG~V~~Wd~~~r-------------Krl~q~---~~~~~SI~slsfs~dG-------~~LAia~s  294 (323)
T KOG1036|consen  252 SDGIVNIWDLFNR-------------KRLKQL---AKYETSISSLSFSMDG-------SLLAIASS  294 (323)
T ss_pred             CCceEEEccCcch-------------hhhhhc---cCCCCceEEEEeccCC-------CeEEEEec
Confidence            9999999999876             444443   3456789999999999       78888764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.3e-22  Score=155.96  Aligned_cols=214  Identities=18%  Similarity=0.255  Sum_probs=168.3

Q ss_pred             CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555           23 VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG   91 (298)
Q Consensus        23 ~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~   91 (298)
                      .++.|.+++.. |.+.+++.+      -+|.     .+..+.+|-..|+|+.|+-||.+|++|++     ||.|.+|.+-
T Consensus        80 ~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-----Dg~V~vW~l~  153 (476)
T KOG0646|consen   80 LPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-----DGAVLVWLLT  153 (476)
T ss_pred             cccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-----CccEEEEEEE
Confidence            34566777666 556666655      2553     35667899999999999999999999965     9999999873


Q ss_pred             ---------CceeeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           92 ---------SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        92 ---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                               +-++...|..|.-+|+++...+.  ..+++++|.|.++++||+..       ..++..+. .+..+.+++.
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-------g~LLlti~-fp~si~av~l  225 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-------GVLLLTIT-FPSSIKAVAL  225 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-------ceeeEEEe-cCCcceeEEE
Confidence                     23567788999999999999875  35899999999999999997       45555544 4678999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEEccCCcc-------------eeeeeecCCCCC--ceEEEEEeeccccCCccEEEEeecCCc
Q 037555          161 NPFGHEFATGSRDKTVKIWAVENKSS-------------VKQILALPPFNS--SVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       161 ~~~~~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                      +|-+..++.|+.+|.|.+.++.....             ...+..+.+|..  .|+|++.+-++     .+|++|+.||.
T Consensus       226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-----tlLlSGd~dg~  300 (476)
T KOG0646|consen  226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-----TLLLSGDEDGK  300 (476)
T ss_pred             cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-----cEEEeeCCCCC
Confidence            99999999999999999888765331             112335567777  99999999999     89999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                      |.|||+.+.             ++++.+..   ..++|+.+.+.|-
T Consensus       301 VcvWdi~S~-------------Q~iRtl~~---~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  301 VCVWDIYSK-------------QCIRTLQT---SKGPVTNLQINPL  330 (476)
T ss_pred             EEEEecchH-------------HHHHHHhh---hccccceeEeecc
Confidence            999999887             55555432   4567777777554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=6.9e-22  Score=146.25  Aligned_cols=217  Identities=16%  Similarity=0.291  Sum_probs=158.6

Q ss_pred             eEEeccCCCceEEEEEcCCCCE-EEeEeccCCCCc---eEEEEEEcCCc---------eeeeccc-cccccEEEEEEcCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKL-VASSCKAQSTAA---AEIWLWEVGSW---------KAMGRLQ-SHSLTVTQIRFSHD  114 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~-l~~~~~~~~~~d---~~i~vw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~  114 (298)
                      .+.|..|.++|..++-+|..+. |+++-.+.+ ..   ..+.||.+...         +.+..+. .+-+.|.|+.|.|+
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s-~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTS-DSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccC-CCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3456778899999999996554 454433222 22   35779998642         2333343 35568999999999


Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  192 (298)
                      +..+++-. |..|.+|++........ ......-..+....++-+|+|  +++.+++.+ |+++..||+|+.++...+. 
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~va-ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~-  210 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVA-EVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE-  210 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchhe-eecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh-
Confidence            99888877 88999999987543211 001111123566778889999  566666654 7999999999887766332 


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                       .+|...|..+.|+|+..    .+|+++++||.|++||.+..+               ..+.++.+|...|+++.|+|..
T Consensus       211 -dAHgq~vrdlDfNpnkq----~~lvt~gDdgyvriWD~R~tk---------------~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  211 -DAHGQRVRDLDFNPNKQ----HILVTCGDDGYVRIWDTRKTK---------------FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             -hhhcceeeeccCCCCce----EEEEEcCCCccEEEEeccCCC---------------ccccccCCCceEEEEEEecCcc
Confidence             35778899999999875    789999999999999999653               2233467899999999999987


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEe
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .      .+++++|.|..|.+|-.
T Consensus       271 d------qLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  271 D------QLILSGGSDSAVNLSCA  288 (370)
T ss_pred             c------eEEEecCCCceeEEEec
Confidence            4      79999999999999854

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.4e-21  Score=146.20  Aligned_cols=204  Identities=17%  Similarity=0.312  Sum_probs=155.5

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC--EEEeEeccCCCCce
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK--LVASSCKAQSTAAA   83 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~~~~~~d~   83 (298)
                      +-.+..|..++.+++.+   +..++++      .+++     +...+-.|.+.|+++.|.++-.  .|++|     .+||
T Consensus        36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~-----sdDG  107 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG-----SDDG  107 (362)
T ss_pred             cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee-----cCCC
Confidence            56678999999999887   3444444      2232     4566778999999999998765  78888     5699


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-----ceeeeE------------
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-----DYQLIA------------  146 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~------------  146 (298)
                      .|.+|+....+.+.++++|.+.|+.++.+|.+++.++.+.|+.+++||+-.+.....     ....+.            
T Consensus       108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999976553221     000000            


Q ss_pred             -----Eee----------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          147 -----RQE----------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       147 -----~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                           .+.          .....+.++.|. ++..|++|..|+.|++||..+..+..   .+.+|...|..+.+--+.  
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~---~~~AH~~RVK~i~~~~~~--  261 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT---EFLAHENRVKDIASYTNP--  261 (362)
T ss_pred             ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccce---eeecchhheeeeEEEecC--
Confidence                 000          001224444444 56789999999999999999877666   677899999999854431  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecc
Q 037555          212 KNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                       .+.+|++++.||.|+|||++...
T Consensus       262 -~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  262 -EHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             -CceEEEEeccCceEEEEEccccc
Confidence             12799999999999999998763

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.6e-21  Score=155.37  Aligned_cols=236  Identities=22%  Similarity=0.339  Sum_probs=181.5

Q ss_pred             ccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           20 LESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      +.-.+..|.+++++.. ...++.+      .+|.      ....+.++. +.|.+++|++.++++-++      .+|.|.
T Consensus        21 ~d~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g------~sg~i~   93 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG------LSGSIT   93 (691)
T ss_pred             EeeeccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec------CCceEE
Confidence            3455677788888743 3444444      2443      345666655 479999999666555444      489999


Q ss_pred             EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555           87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus        87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (298)
                      -||+.+++....+....+.|.+++.+|.+..++.|+.||.+..++.....     ......+....+.|.++.|+|++..
T Consensus        94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-----I~~~r~l~rq~sRvLslsw~~~~~~  168 (691)
T KOG2048|consen   94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-----ITYKRSLMRQKSRVLSLSWNPTGTK  168 (691)
T ss_pred             EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-----EEEEeecccccceEEEEEecCCccE
Confidence            99999999999999899999999999999999999999977777765432     3334445556789999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCcceeee----eecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQI----LALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      +++|+.||.|++||...+......    ..+.. ...-|+++.|-.++      .|++|...|.|.+||...+.      
T Consensus       169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------tI~sgDS~G~V~FWd~~~gT------  236 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------TIASGDSAGTVTFWDSIFGT------  236 (691)
T ss_pred             EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC------cEEEecCCceEEEEcccCcc------
Confidence            999999999999999987765511    11111 33447888888765      89999999999999998773      


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                             .+..   +..|.+.|.+|+..+++       .+++++|.|+.|..+..
T Consensus       237 -------LiqS---~~~h~adVl~Lav~~~~-------d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  237 -------LIQS---HSCHDADVLALAVADNE-------DRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             -------hhhh---hhhhhcceeEEEEcCCC-------CeEEEccCCCceEEEEe
Confidence                   3333   55799999999999998       89999999999887764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=7.4e-20  Score=146.90  Aligned_cols=249  Identities=11%  Similarity=0.074  Sum_probs=169.0

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccc-ccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQL-AWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      ++.+..++..+++.+..+..+.. +..+.+.| .+..+ +..      .+|+     ....+..+. .+..++|+|+++.
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~   86 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVGQR-PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKI   86 (300)
T ss_pred             CCEEEEEECCCCceEEEEECCCC-CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCE
Confidence            45677788888888888876654 55677774 44433 332      2332     223343333 3578899999998


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC-eEEEEEeccCCCCccceeeeEEee
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-QFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      +++++    ..++.|++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||...       ........
T Consensus        87 l~~~~----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------~~~~~~~~  154 (300)
T TIGR03866        87 LYIAN----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------YEIVDNVL  154 (300)
T ss_pred             EEEEc----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------CeEEEEEE
Confidence            87664    3478999999998877766652 33468899999999999888765 566778765       22332222


Q ss_pred             ccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCC-----CCCceEEEEEeeccccCCccEE-EEeec
Q 037555          150 AHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPP-----FNSSVTALSWVGLDRQKNHGFL-AVGME  222 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l-~~g~~  222 (298)
                       .......+.|+|++++|+++ ..++.|++||+++++....+. +..     .......++|+|++     .++ ++...
T Consensus       155 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg-----~~~~~~~~~  227 (300)
T TIGR03866       155 -VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIKLTKDG-----KTAFVALGP  227 (300)
T ss_pred             -cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceEECCCC-----CEEEEEcCC
Confidence             23345779999999988655 468999999999887655332 111     11124568899988     554 44455


Q ss_pred             CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee-eCCCcEEEeEec
Q 037555          223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC-GADNTVRVFQVN  297 (298)
Q Consensus       223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iw~~~  297 (298)
                      ++.|.+||.++.             +....+.    +...+.+++|+|++       .+|+++ +.++.|++||++
T Consensus       228 ~~~i~v~d~~~~-------------~~~~~~~----~~~~~~~~~~~~~g-------~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       228 ANRVAVVDAKTY-------------EVLDYLL----VGQRVWQLAFTPDE-------KYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CCeEEEEECCCC-------------cEEEEEE----eCCCcceEEECCCC-------CEEEEEcCCCCeEEEEECC
Confidence            678999998765             3333221    34578899999999       677765 569999999975

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.3e-21  Score=160.08  Aligned_cols=188  Identities=20%  Similarity=0.267  Sum_probs=151.5

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      ..+-++++++|+.+|+++|.|+     +|-.|++-+..+......+++|.++|.++.|+|++++||+.+.||.|++|+++
T Consensus        94 Rftlp~r~~~v~g~g~~iaags-----dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGKMIAAGS-----DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             eeeccceEEEEecCCcEEEeec-----CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            3457899999999999999994     58999999999988889999999999999999999999999999999999998


Q ss_pred             cCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          134 RTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      .......-.......... ...+..++|+|++..|++...|+.|++|+..+......+.. ..+...+..++|+|.|   
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~ss~~~~~~wsPnG---  244 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSSSKFSDLQWSPNG---  244 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cccccceEEEEEcCCC---
Confidence            743211100111111111 45677899999999999999999999999999888775533 3344559999999999   


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                        .|||+++.+|.|.|||..+-+                    .......|.+++|.|+.
T Consensus       245 --~YiAAs~~~g~I~vWnv~t~~--------------------~~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  245 --KYIAASTLDGQILVWNVDTHE--------------------RHEFKRAVCCEAWKPNA  282 (933)
T ss_pred             --cEEeeeccCCcEEEEecccch--------------------hccccceeEEEecCCCC
Confidence              899999999999999998631                    11245689999999987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=3.1e-21  Score=148.44  Aligned_cols=207  Identities=16%  Similarity=0.274  Sum_probs=157.4

Q ss_pred             eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCC-CCEEE
Q 037555           49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHD-DNLLL  119 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~  119 (298)
                      .-.+.||+++|..++|+| +...+|+|     ++|.+|.||.+..+       +++..+.+|...|.-++|+|. .+.|+
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASg-----SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLl  148 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASG-----SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLL  148 (472)
T ss_pred             CCCccCccccccccccCccCCceeecC-----CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHh
Confidence            445679999999999999 45567777     56999999998654       445668899999999999994 56899


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC-
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS-  198 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-  198 (298)
                      +++.|.+|.+|++.+       +..+..+. |...|+++.|+.+|.+|++.+.|.+|||||.++++.+..   -.+|.+ 
T Consensus       149 sag~Dn~v~iWnv~t-------geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~  217 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGT-------GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGA  217 (472)
T ss_pred             hccCCceEEEEeccC-------CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee---cccccCC
Confidence            999999999999998       44455565 999999999999999999999999999999999988773   334443 


Q ss_pred             ceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      ....+.|..++     .++.+|.   .+..+-+||..+-+.+          .....+.    ....|.---|.++.   
T Consensus       218 k~~Raifl~~g-----~i~tTGfsr~seRq~aLwdp~nl~eP----------~~~~elD----tSnGvl~PFyD~dt---  275 (472)
T KOG0303|consen  218 KPARAIFLASG-----KIFTTGFSRMSERQIALWDPNNLEEP----------IALQELD----TSNGVLLPFYDPDT---  275 (472)
T ss_pred             CcceeEEeccC-----ceeeeccccccccceeccCcccccCc----------ceeEEec----cCCceEEeeecCCC---
Confidence            34567777777     5555554   4788999998875432          1222222    23445445567776   


Q ss_pred             CCcceEE-EeeeCCCcEEEeEec
Q 037555          276 NSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                          .++ +.|-.|+.||.|++.
T Consensus       276 ----~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  276 ----SIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             ----CEEEEEecCCcceEEEEec
Confidence                454 455579999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.1e-21  Score=156.68  Aligned_cols=260  Identities=17%  Similarity=0.260  Sum_probs=201.7

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccc-cccc--------------------------------------
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQ-LAWH--------------------------------------   43 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~--------------------------------------   43 (298)
                      ++..+.|+..||.++.++.- .+.|.+++|.|....- ++.+                                      
T Consensus       421 DGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~  499 (733)
T KOG0650|consen  421 DGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAV  499 (733)
T ss_pred             CCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccc
Confidence            46778999999999888765 3377777777533211 1111                                      


Q ss_pred             CCCCc---------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC
Q 037555           44 TLWPE---------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD  114 (298)
Q Consensus        44 ~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (298)
                      ..|..         +.....|..+|..+.|+..|.+|++.+.+  +....|.|.++.......-|+-..+.|.++.|+|.
T Consensus       500 ~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~--~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs  577 (733)
T KOG0650|consen  500 VTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD--SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS  577 (733)
T ss_pred             eeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC--CCcceEEEEecccccccCchhhcCCceeEEEecCC
Confidence            13421         23445688999999999999999999765  33678999999887777778777888999999999


Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      ..+|++++. ..|++||+..       ..+++.+......|..++.+|.|..|+.++.|+.+..+|+.-.....  .++.
T Consensus       578 ~p~lfVaTq-~~vRiYdL~k-------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy--k~lr  647 (733)
T KOG0650|consen  578 KPYLFVATQ-RSVRIYDLSK-------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY--KTLR  647 (733)
T ss_pred             CceEEEEec-cceEEEehhH-------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh--HHhh
Confidence            888888885 6899999987       55667777777889999999999999999999999999998653222  2566


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce----EEEEEeec
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA----VNRMAWKT  270 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~  270 (298)
                      -|...+++++|++.-     .++++|+.||.+.|+.-.-..-.       .++..+..+..+.+|...    |.+..|+|
T Consensus       648 ~H~~avr~Va~H~ry-----PLfas~sdDgtv~Vfhg~VY~Dl-------~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  648 LHEKAVRSVAFHKRY-----PLFASGSDDGTVIVFHGMVYNDL-------LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             hhhhhhhhhhhcccc-----ceeeeecCCCcEEEEeeeeehhh-------hcCCceEeeeeccCceeecccceEeecccC
Confidence            688999999999998     69999999999999864422100       011445566667888766    99999999


Q ss_pred             CCCCCCCcceEEEeeeCCCcEEEe
Q 037555          271 HEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       271 ~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      ..       .+|++++.||+|++|
T Consensus       716 ~q-------pWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQ-------PWLFSAGADGTIRLF  732 (733)
T ss_pred             CC-------ceEEecCCCceEEee
Confidence            98       799999999999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=161.40  Aligned_cols=194  Identities=14%  Similarity=0.189  Sum_probs=169.9

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      ..+++++.++.|++.+.|     ...|.|-+|++++|-...++   ..|..+|++++...-++.+++++.+|.+.+||+.
T Consensus       449 ~~~~av~vs~CGNF~~IG-----~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIG-----YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             cceEEEEEeccCceEEEe-----ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence            679999999999999999     45899999999999888888   4799999999999888999999999999999998


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .       ..++..+. -...+.++..+.....++.+..|-.|+++|..+.+..+   .+.+|...|++++|+|++    
T Consensus       524 ~-------k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR---~f~gh~nritd~~FS~Dg----  588 (910)
T KOG1539|consen  524 K-------KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR---EFWGHGNRITDMTFSPDG----  588 (910)
T ss_pred             C-------cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH---HhhccccceeeeEeCCCC----
Confidence            6       33444443 35667888888888899999999999999999988887   788999999999999999    


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC-CcEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD-NTVR  292 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~  292 (298)
                       .+|++++.|++|++||+.++             .++-.+.    ...+..++.|+|++       .+|||...| .-|+
T Consensus       589 -rWlisasmD~tIr~wDlpt~-------------~lID~~~----vd~~~~sls~SPng-------D~LAT~Hvd~~gIy  643 (910)
T KOG1539|consen  589 -RWLISASMDSTIRTWDLPTG-------------TLIDGLL----VDSPCTSLSFSPNG-------DFLATVHVDQNGIY  643 (910)
T ss_pred             -cEEEEeecCCcEEEEeccCc-------------ceeeeEe----cCCcceeeEECCCC-------CEEEEEEecCceEE
Confidence             79999999999999999988             5544443    56789999999999       899999988 6799


Q ss_pred             EeE
Q 037555          293 VFQ  295 (298)
Q Consensus       293 iw~  295 (298)
                      +|-
T Consensus       644 lWs  646 (910)
T KOG1539|consen  644 LWS  646 (910)
T ss_pred             EEE
Confidence            995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3e-20  Score=151.90  Aligned_cols=210  Identities=18%  Similarity=0.287  Sum_probs=164.6

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-ecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      +.--..+|.+++|+.+.+.||.+     -.+|.|.+|++...=.. ..+.+ ....|.+++|+ ++..|++.+.+|.|..
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvs-----Rt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVS-----RTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE   94 (691)
T ss_pred             EeeeccceEEEEEeccCCceeee-----ccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence            33456889999999999999999     56999999999865332 33444 35679999999 5567889999999999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ||+.+       .++........+.|++++.+|.+..++.|+.||.+..++...++.... ..+....+.+.++.|+|++
T Consensus        95 wDl~~-------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~-r~l~rq~sRvLslsw~~~~  166 (691)
T KOG2048|consen   95 WDLHT-------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK-RSLMRQKSRVLSLSWNPTG  166 (691)
T ss_pred             Eeccc-------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE-eecccccceEEEEEecCCc
Confidence            99998       667777888889999999999999999999999888888776554432 2455556899999999998


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-ccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-HVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                           ..+++|+.||.|++||...+.....         ....+..+.. ...-|+++.|-.++        .|++|..-
T Consensus       167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~---------~~~~~d~l~k~~~~iVWSv~~Lrd~--------tI~sgDS~  224 (691)
T KOG2048|consen  167 -----TKIAGGSIDGVIRIWDVKSGQTLHI---------ITMQLDRLSKREPTIVWSVLFLRDS--------TIASGDSA  224 (691)
T ss_pred             -----cEEEecccCceEEEEEcCCCceEEE---------eeecccccccCCceEEEEEEEeecC--------cEEEecCC
Confidence                 6799999999999999988732210         0011111222 34568899998776        89999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      |+|.+||..
T Consensus       225 G~V~FWd~~  233 (691)
T KOG2048|consen  225 GTVTFWDSI  233 (691)
T ss_pred             ceEEEEccc
Confidence            999999964

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.8e-21  Score=150.09  Aligned_cols=248  Identities=17%  Similarity=0.196  Sum_probs=187.2

Q ss_pred             eecCcccccccCCCCCceeeeccCCCcccccccC------CCC-------ceEEeccCCC-ceEEEEEcCCCCEEEeEec
Q 037555           11 RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP-------ESHKLYGHGN-ELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~   76 (298)
                      +.....++.+.-..-++.+..|.|...+.+.++.      .|+       .+..+.++.. .+.....+|++++|+..+.
T Consensus       244 Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~  323 (514)
T KOG2055|consen  244 GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN  323 (514)
T ss_pred             CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc
Confidence            4445567777777778888888865554665552      232       2344455553 5678888999999999954


Q ss_pred             cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce-
Q 037555           77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII-  155 (298)
Q Consensus        77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-  155 (298)
                           .|.|.+....+++.+.++. -.+.|..++|+.+++.|++++.+|.|.+||++.       ..++..+.. .+.| 
T Consensus       324 -----~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-------~~~~~rf~D-~G~v~  389 (514)
T KOG2055|consen  324 -----NGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-------NSCLHRFVD-DGSVH  389 (514)
T ss_pred             -----CceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-------cceEEEEee-cCccc
Confidence                 8999999999999998888 678899999999999999999999999999997       445555543 3333 


Q ss_pred             -EEEEEccCCCEEEEeeCCCeEEEEEccCC---cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec--CCcEEEE
Q 037555          156 -WSCSWNPFGHEFATGSRDKTVKIWAVENK---SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME--SGVIELW  229 (298)
Q Consensus       156 -~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~--dg~i~vw  229 (298)
                       ++++.++++.+||+|+..|.|.|||..+.   ....++..+......|+++.|+|+.     ++|+.++.  +..+++-
T Consensus       390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-----qiLAiaS~~~knalrLV  464 (514)
T KOG2055|consen  390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-----QILAIASRVKKNALRLV  464 (514)
T ss_pred             eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-----hhhhhhhhccccceEEE
Confidence             56777789999999999999999996542   2223333555566789999999998     78888774  5678888


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+.+.             .....+......-+.|++|+|+|.+       .+|+.|..+|.+.+|.|.
T Consensus       465 HvPS~-------------TVFsNfP~~n~~vg~vtc~aFSP~s-------G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  465 HVPSC-------------TVFSNFPTSNTKVGHVTCMAFSPNS-------GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eccce-------------eeeccCCCCCCcccceEEEEecCCC-------ceEEeecCCCceeeEeec
Confidence            87654             2233333233345679999999998       899999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.1e-22  Score=173.26  Aligned_cols=207  Identities=21%  Similarity=0.318  Sum_probs=157.8

Q ss_pred             CCceEEEEEcCCCCE---EEeEeccCCCCceEEEEEEcCC---c---eeeeccccccccEEEEEEcCC-CCEEEEEeCCC
Q 037555           56 GNELFSLCCDHQGKL---VASSCKAQSTAAAEIWLWEVGS---W---KAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDR  125 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~---l~~~~~~~~~~d~~i~vw~~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  125 (298)
                      ....+.++|.+.|..   |++|+    .+||.|.+||...   +   ..+.++..|++.|..+.|++. +++|++|+.||
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGG----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG  139 (1049)
T ss_pred             cccceeeeecccCCCccceeecc----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence            346789999987766   34443    5799999999865   2   234566789999999999994 56999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .|.|||+..........     -....+.|.+++|+. ....|++++.+|++.|||++..+.+..+... .....+..++
T Consensus       140 eI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~  213 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLA  213 (1049)
T ss_pred             cEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeee
Confidence            99999998744321101     123457899999997 4567899999999999999988776633222 2234578999


Q ss_pred             EeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          205 WVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      |+|+..    ..|+++++|   -.|.+||+|...               ..+..+.+|...|.+|.|++.+.      .+
T Consensus       214 WhP~~a----Tql~~As~dd~~PviqlWDlR~as---------------sP~k~~~~H~~GilslsWc~~D~------~l  268 (1049)
T KOG0307|consen  214 WHPDHA----TQLLVASGDDSAPVIQLWDLRFAS---------------SPLKILEGHQRGILSLSWCPQDP------RL  268 (1049)
T ss_pred             eCCCCc----eeeeeecCCCCCceeEeecccccC---------------CchhhhcccccceeeeccCCCCc------hh
Confidence            999875    666766654   379999998543               22333668999999999999774      89


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      |++++.|+.|.+|+.+
T Consensus       269 llSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  269 LLSSGKDNRIICWNPN  284 (1049)
T ss_pred             hhcccCCCCeeEecCC
Confidence            9999999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=2.6e-21  Score=158.44  Aligned_cols=244  Identities=18%  Similarity=0.304  Sum_probs=185.1

Q ss_pred             CCCCCceeeeccCCCccccccc-------------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH-------------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW   88 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw   88 (298)
                      +-........+.|...-.++.+             ..|.....+.||.+.|..++|+|.|.+|.+.+.     |-+-+++
T Consensus       314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----DQTTRlF  388 (764)
T KOG1063|consen  314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----DQTTRLF  388 (764)
T ss_pred             ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-----ccceeee
Confidence            3344456666774433333333             234445567899999999999999999999965     7777777


Q ss_pred             EcC----CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC-------------CC-cc----------
Q 037555           89 EVG----SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG-------------TG-EI----------  140 (298)
Q Consensus        89 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~-~~----------  140 (298)
                      -.-    +...+..-+-|...++|++|-+....+++|.....+|+|+....-             .. ..          
T Consensus       389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG  468 (764)
T KOG1063|consen  389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG  468 (764)
T ss_pred             cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence            543    123444556788999999999877789999999999999864210             00 00          


Q ss_pred             ---------------------------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-
Q 037555          141 ---------------------------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-  174 (298)
Q Consensus       141 ---------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  174 (298)
                                                                   .++.+..+.+|...|++++.+|+++++|++.... 
T Consensus       469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~  548 (764)
T KOG1063|consen  469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL  548 (764)
T ss_pred             ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence                                                         1222344567889999999999999999998643 


Q ss_pred             ----eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555          175 ----TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII  250 (298)
Q Consensus       175 ----~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  250 (298)
                          .|++|+..+-....   .+..|.-.|+.++|+|++     .+|++.+.|+.+.+|.......            ..
T Consensus       549 ~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg-----~~LLsvsRDRt~sl~~~~~~~~------------~e  608 (764)
T KOG1063|consen  549 KEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDG-----RYLLSVSRDRTVSLYEVQEDIK------------DE  608 (764)
T ss_pred             ccceEEEEEeccchhhhh---eecccceEEEEEEECCCC-----cEEEEeecCceEEeeeeecccc------------hh
Confidence                49999999887776   778899999999999999     7999999999999999855422            12


Q ss_pred             eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..+...+.|.-.|+++.|+|++       .+++|+|.|.+|++|...
T Consensus       609 ~~fa~~k~HtRIIWdcsW~pde-------~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  609 FRFACLKAHTRIIWDCSWSPDE-------KYFATASRDKKVKVWEEP  648 (764)
T ss_pred             hhhccccccceEEEEcccCccc-------ceeEEecCCceEEEEecc
Confidence            2233466799999999999999       789999999999999763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=2.1e-20  Score=136.49  Aligned_cols=198  Identities=14%  Similarity=0.138  Sum_probs=159.8

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCCceEEe----------ccCCCceEEEEEcCCCCEEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKL----------YGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~   72 (298)
                      +..++.++...++++..+....+.+.. .+.|+ +++++....-+.+..+          ......+..+.|+-++.+++
T Consensus        86 dk~ir~wd~r~~k~~~~i~~~~eni~i-~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff  163 (313)
T KOG1407|consen   86 DKTIRIWDIRSGKCTARIETKGENINI-TWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF  163 (313)
T ss_pred             CceEEEEEeccCcEEEEeeccCcceEE-EEcCC-CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence            345788889999999988887766665 34534 4444443222222111          23445688899987777666


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      ..     ...|.|.|....+.+++..+++|.....|+.|+|+|++||+|+.|..+.+||++.       ..+++.+..+.
T Consensus       164 lt-----~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-------LiC~R~isRld  231 (313)
T KOG1407|consen  164 LT-----NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-------LICERCISRLD  231 (313)
T ss_pred             Ee-----cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-------hhhheeecccc
Confidence            65     2379999999999999999999999999999999999999999999999999987       67788888899


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                      -+|..+.|+.+|++||+++.|..|-|=+++++..+.   .++ +.++...++|+|..     .+|+.++.|
T Consensus       232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~---eI~-~~~~t~tVAWHPk~-----~LLAyA~dd  293 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW---EIP-CEGPTFTVAWHPKR-----PLLAYACDD  293 (313)
T ss_pred             CceEEEEeccCcceeeccCccceEEeEecccCCeEE---Eee-ccCCceeEEecCCC-----ceeeEEecC
Confidence            999999999999999999999999999999999887   554 78889999999998     688877765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=3.5e-20  Score=146.94  Aligned_cols=242  Identities=16%  Similarity=0.232  Sum_probs=179.0

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCCceEE--eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPESHK--LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW   88 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw   88 (298)
                      .....+|.+....++..|... ++++.      .+|..-+.  -+.-.+++.|+.|+|.| .+|.|     ...|...+.
T Consensus       361 ~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~G-----t~~G~w~V~  433 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVG-----TATGRWFVL  433 (626)
T ss_pred             eEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEe-----eccceEEEE
Confidence            445678888888888885544 44443      57752111  12245789999999999 88888     458999999


Q ss_pred             EcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555           89 EVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA  168 (298)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (298)
                      |.++...+..-.. ..++++++|+|+|.+||.|+.|+.|.+|.+.....     +..+.-+.+..+|+.+.|++|+++|.
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-----KYSRVGKCSGSPITHLDWSSDSQFLV  507 (626)
T ss_pred             ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-----EEEEeeeecCceeEEeeecCCCceEE
Confidence            9998666655444 88999999999999999999999999999987542     22233333458999999999999999


Q ss_pred             EeeCCCeEEEEEccCCcceeeeeecC---------------CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          169 TGSRDKTVKIWAVENKSSVKQILALP---------------PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       169 ~~~~dg~i~~wd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +-+.|-.|..|.....+....+...+               .+...|..++-+...     .++++|.+.|.|++|....
T Consensus       508 ~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-----~~lA~gdd~g~v~lf~yPc  582 (626)
T KOG2106|consen  508 SNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-----KLLASGDDFGKVHLFSYPC  582 (626)
T ss_pred             eccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-----hhhhccccCceEEEEcccc
Confidence            99999999999443332222111111               122333444444444     7999999999999999876


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .             +....+.++.+|...|.+++|.-+.       ..|++.+.|.+|..|++
T Consensus       583 ~-------------s~rA~~he~~ghs~~vt~V~Fl~~d-------~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  583 S-------------SPRAPSHEYGGHSSHVTNVAFLCKD-------SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             C-------------CCcccceeeccccceeEEEEEeeCC-------ceEEecCCCceEEEEEe
Confidence            5             4444556688999999999999988       67887779999999987

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=7.1e-20  Score=145.22  Aligned_cols=239  Identities=15%  Similarity=0.260  Sum_probs=175.8

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc-----CCCC--------ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP--------ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTA   81 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~   81 (298)
                      .+...+...+.|....|.|-....+.+.     ..|.        ....+.++. .-|.|++|.++|. +++|     +.
T Consensus       192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTg-----DS  265 (626)
T KOG2106|consen  192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITG-----DS  265 (626)
T ss_pred             ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEee-----cC
Confidence            3444455556667778886665555544     1231        223333333 5699999999987 5566     56


Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc---------------------
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI---------------------  140 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------  140 (298)
                      +|.|.||+..+.+..+....|.+.|.+++...+|.++ +|+.|+.|..||-.-....+.                     
T Consensus       266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~v  344 (626)
T KOG2106|consen  266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILV  344 (626)
T ss_pred             CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEE
Confidence            8999999998888777777999999999999999655 599999999999432211000                     


Q ss_pred             ------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          141 ------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       141 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                                  .........+|....+.++.+|+.+.+++++.|+.+++|+  ..+...   +.. ...++.++.|+|.
T Consensus       345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w---t~~-~~d~~~~~~fhps  418 (626)
T KOG2106|consen  345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW---TKI-IEDPAECADFHPS  418 (626)
T ss_pred             eeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE---EEE-ecCceeEeeccCc
Confidence                        0111123346788899999999999999999999999999  334433   221 4577899999998


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                      +      .++.|...|...+.|.++.             ..+. +.  . ...+++.++|+|+|       .+||.++.|
T Consensus       419 g------~va~Gt~~G~w~V~d~e~~-------------~lv~-~~--~-d~~~ls~v~ysp~G-------~~lAvgs~d  468 (626)
T KOG2106|consen  419 G------VVAVGTATGRWFVLDTETQ-------------DLVT-IH--T-DNEQLSVVRYSPDG-------AFLAVGSHD  468 (626)
T ss_pred             c------eEEEeeccceEEEEecccc-------------eeEE-EE--e-cCCceEEEEEcCCC-------CEEEEecCC
Confidence            6      8999999999999999874             2222 22  1 27899999999999       899999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      +.|+||.++
T Consensus       469 ~~iyiy~Vs  477 (626)
T KOG2106|consen  469 NHIYIYRVS  477 (626)
T ss_pred             CeEEEEEEC
Confidence            999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=3.2e-21  Score=156.95  Aligned_cols=118  Identities=20%  Similarity=0.408  Sum_probs=97.1

Q ss_pred             CceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCccee----eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          153 RIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVK----QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       153 ~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      ..|+.+.|.| |...|+++++||.|++|.+..+....    .-..+..|...|+++.|+|-..    .+|++++.|-+|+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa----dvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA----DVLAVASYDSTIE  703 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh----hHhhhhhccceee
Confidence            3577888998 77899999999999999997643322    1114557889999999999764    7999999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +||+.+....             .   .+.+|...|.+++|+|+|       +.+++.+.||+|++|+-+
T Consensus       704 lWDl~~~~~~-------------~---~l~gHtdqIf~~AWSpdG-------r~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  704 LWDLANAKLY-------------S---RLVGHTDQIFGIAWSPDG-------RRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             eeehhhhhhh-------------h---eeccCcCceeEEEECCCC-------cceeeeecCceEEEeCCC
Confidence            9999876321             2   266899999999999999       899999999999999743

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=3.1e-20  Score=153.17  Aligned_cols=214  Identities=15%  Similarity=0.209  Sum_probs=169.0

Q ss_pred             EEeccCCCceEEEEEcCC-----------CCEEEeEeccCCCCceEEEEEEcCCce---ee----------ec-------
Q 037555           50 HKLYGHGNELFSLCCDHQ-----------GKLVASSCKAQSTAAAEIWLWEVGSWK---AM----------GR-------   98 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~-----------~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~----------~~-------   98 (298)
                      ..+--|...|..+.--|.           ...+++++     .|++|++|++..+.   ..          +.       
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS-----sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~  437 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS-----SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ  437 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEec-----CCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence            344457777777765541           12477774     59999999997521   00          00       


Q ss_pred             -----------------cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           99 -----------------LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        99 -----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                                       .-.....+.+++.+|+|++|++|..-|.+++|++..       .........|+.+|.++.++
T Consensus       438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-------l~~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-------LEYTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-------hhhhhheecccceeEEEeec
Confidence                             011234689999999999999999999999999987       66677889999999999998


Q ss_pred             c---CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------------------
Q 037555          162 P---FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------------------------  210 (298)
Q Consensus       162 ~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------  210 (298)
                      .   ...+||+++.|..|++||....-.+  +.++.+|...|+++.|.-.+.                            
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~  588 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP  588 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence            5   3478999999999999998653322  236777888888888877663                            


Q ss_pred             ----------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          211 ----------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       211 ----------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                                      .+...+++++++|..|+||++.++             +..+.|..-.+|.+....+...|.+  
T Consensus       589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-------------Kq~k~FKgs~~~eG~lIKv~lDPSg--  653 (1080)
T KOG1408|consen  589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-------------KQVKSFKGSRDHEGDLIKVILDPSG--  653 (1080)
T ss_pred             ccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-------------ceeeeecccccCCCceEEEEECCCc--
Confidence                            555689999999999999999998             6777777777888889999999999  


Q ss_pred             CCCcceEEEeeeCCCcEEEeEec
Q 037555          275 KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           .+|++...|.++.++|+-
T Consensus       654 -----iY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  654 -----IYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             -----cEEEEeecCCceEEEEec
Confidence                 899999999999999973

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=9.8e-21  Score=142.47  Aligned_cols=253  Identities=17%  Similarity=0.235  Sum_probs=172.8

Q ss_pred             cccCCCCCceeeeccCCCc----cccccc------------CCCC-ceEEec--cCCCceEEEEEcCC----CCEEEeEe
Q 037555           19 TLESVPDAVPAVFTEPPIE----DQLAWH------------TLWP-ESHKLY--GHGNELFSLCCDHQ----GKLVASSC   75 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~----~~~~~~------------~~~~-~~~~~~--~h~~~v~~~~~s~~----~~~l~~~~   75 (298)
                      ..+.|..+++.++|++-.+    +.+++.            ..|- .++.+.  .|......++|+-+    ..+||+++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            3467778888888873221    222222            1111 122222  36778889999753    45788885


Q ss_pred             ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555           76 KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI  154 (298)
Q Consensus        76 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                           .-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|..|++|++++...    .....-+.+|.+.
T Consensus       113 -----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C----v~VfGG~egHrde  183 (385)
T KOG1034|consen  113 -----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC----VAVFGGVEGHRDE  183 (385)
T ss_pred             -----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE----EEEecccccccCc
Confidence                 48999999999999999999999999999999954 7999999999999999998321    1223344679999


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-------------------------eeeecCCCCCceEEEEEeecc
Q 037555          155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-------------------------QILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      |.++.|++++.+|++++.|..|++|++...+...                         .+.+-..|...|-|+.|-.  
T Consensus       184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--  261 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--  261 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--
Confidence            9999999999999999999999999998422111                         0001123555666666655  


Q ss_pred             ccCCccEEEEeecCCcEEEEEee-ecccccccCCCCCCcceeeeeccCCcccceEEEEEee--cCCCCCCCcceEEEeee
Q 037555          210 RQKNHGFLAVGMESGVIELWSIS-VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK--THEKPKNSRTMQLASCG  286 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~s~~  286 (298)
                           +++++-+-++.|..|..- -.+......++......+..   +.-....|+-|.|.  |-.       .+||.+.
T Consensus       262 -----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~---~~~~~c~iWfirf~~d~~~-------~~la~gn  326 (385)
T KOG1034|consen  262 -----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE---FDYPMCDIWFIRFAFDPWQ-------KMLALGN  326 (385)
T ss_pred             -----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeE---eccCccceEEEEEeecHHH-------HHHhhcc
Confidence                 588888889999999872 22211111111111122222   33344455655554  545       7999999


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      ..|.|.+|||+
T Consensus       327 q~g~v~vwdL~  337 (385)
T KOG1034|consen  327 QSGKVYVWDLD  337 (385)
T ss_pred             CCCcEEEEECC
Confidence            99999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.7e-20  Score=146.91  Aligned_cols=250  Identities=18%  Similarity=0.189  Sum_probs=180.2

Q ss_pred             cccccccCCCCCceeeeccCCCc-cccccc------CCCCc---------eEEeccCCCceEEEEEcCCC-CEEEeEecc
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIE-DQLAWH------TLWPE---------SHKLYGHGNELFSLCCDHQG-KLVASSCKA   77 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~------~~~~~---------~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~   77 (298)
                      ....+...+...|.+++|.|... ..++.+      -+|+.         +..+..|..+|.++.|+|.. ..+++.+  
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS--  254 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS--  254 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec--
Confidence            34556677888999999997766 344444      35643         66778899999999999954 4666664  


Q ss_pred             CCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555           78 QSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII  155 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  155 (298)
                         .||+|++-|++.......+.  .....+..+.|+.+...++.+..=|.+.+||.+....      ....+.-|...|
T Consensus       255 ---yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s------~~~~~~lh~kKI  325 (498)
T KOG4328|consen  255 ---YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS------EYENLRLHKKKI  325 (498)
T ss_pred             ---cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc------cchhhhhhhccc
Confidence               49999999998765433333  3556778888988877788888778999999998643      234456688899


Q ss_pred             EEEEEccC-CCEEEEeeCCCeEEEEEccCCcceee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          156 WSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       156 ~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ..++++|. ..+|++++.|++++|||++....... +.....|...|.+..|+|.+     ..|++.+.|..|+|||...
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----GTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----CceEeeccCCceEEeeccc
Confidence            99999995 46899999999999999997655442 22344599999999999998     5699999999999999851


Q ss_pred             cccccccCCCCCCcceeeeeccCCccc--ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      -....         .+...+..-..+.  -......|.|+.       .+++.+-.-..|-|+|-
T Consensus       401 ~sa~~---------~p~~~I~Hn~~t~RwlT~fKA~W~P~~-------~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  401 ISAKD---------EPLGTIPHNNRTGRWLTPFKAAWDPDY-------NLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             ccccC---------CccceeeccCcccccccchhheeCCCc-------cEEEEeccCcceeEEcC
Confidence            10000         1111111000111  123456799988       89999988888888763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=7.7e-20  Score=141.22  Aligned_cols=147  Identities=20%  Similarity=0.377  Sum_probs=119.4

Q ss_pred             CCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCce---------eeeccccccccEEEEEEcCCCCEEEEEeCC
Q 037555           55 HGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWK---------AMGRLQSHSLTVTQIRFSHDDNLLLSVSRD  124 (298)
Q Consensus        55 h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  124 (298)
                      ...+|..+.|.++.. .|++|+     .|..|++|.++.+.         .+..+..|...|+++.|+|+|.++++|+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CCCceEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            346899999998776 999994     59999999986432         234567899999999999999999999999


Q ss_pred             CeEEEEEeccCCC---------CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555          125 RQFSVFAIQRTGT---------GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       125 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  195 (298)
                      |.+.+|.......         ....+...+.+.+|...|..++|+|+++++++++-|..+++||+..+....   .+.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~d  163 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDD  163 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---eccc
Confidence            9999998762110         112366677888899999999999999999999999999999999887766   5556


Q ss_pred             CCCceEEEEEeecc
Q 037555          196 FNSSVTALSWVGLD  209 (298)
Q Consensus       196 ~~~~v~~~~~~~~~  209 (298)
                      |...+..++|.|.+
T Consensus       164 h~~yvqgvawDpl~  177 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLN  177 (434)
T ss_pred             cccccceeecchhh
Confidence            66677777776655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=1.1e-19  Score=136.46  Aligned_cols=222  Identities=19%  Similarity=0.259  Sum_probs=172.7

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      +.--..+|+|.+|+++++.+|.+.     ....|.||.....   +...++..|...|+.+.|+|..+.|++|+.|..-+
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~-----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSP-----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             eeeccCceeeeeecCCCceEEecc-----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            333467999999999999999994     4788999987654   46778889999999999999999999999999999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee-eecCCCCCceEEEEEee
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI-LALPPFNSSVTALSWVG  207 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~v~~~~~~~  207 (298)
                      +|....+..    +++...+..++...+++.|+|.++.|++|+....|.+|-++..+..--- ..-..+.+.|+++.|+|
T Consensus        81 Vw~~~~~~~----WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp  156 (361)
T KOG1523|consen   81 VWTQPSGGT----WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP  156 (361)
T ss_pred             ccccCCCCe----eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence            999854332    6677777889999999999999999999999999999998865543100 01234678899999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeee----eccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIR----FDPFACHVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      ++     -+|++|+.|+..+|+...-......  +.+.++..-..    +.++....+.|..+.|+|+|       ..|+
T Consensus       157 nn-----VLlaaGs~D~k~rVfSayIK~Vdek--pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-------~~la  222 (361)
T KOG1523|consen  157 NN-----VLLAAGSTDGKCRVFSAYIKGVDEK--PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-------NRLA  222 (361)
T ss_pred             Cc-----ceecccccCcceeEEEEeeeccccC--CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-------CEee
Confidence            98     7999999999999998753321111  12222222221    22233467899999999999       8999


Q ss_pred             eeeCCCcEEEeEe
Q 037555          284 SCGADNTVRVFQV  296 (298)
Q Consensus       284 s~~~d~~i~iw~~  296 (298)
                      -.+.|+++.+=|-
T Consensus       223 wv~Hds~v~~~da  235 (361)
T KOG1523|consen  223 WVGHDSTVSFVDA  235 (361)
T ss_pred             EecCCCceEEeec
Confidence            9999999987653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=4.7e-21  Score=151.91  Aligned_cols=195  Identities=15%  Similarity=0.271  Sum_probs=165.4

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      -..++++.+||.+..++++.     ||.|.|||+.+...++.|++|...+.||.+++||..|-+|+-|.+|+.||++...
T Consensus       510 paCyALa~spDakvcFsccs-----dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             hhhhhhhcCCccceeeeecc-----CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            45778999999999888865     9999999999999999999999999999999999999999999999999999732


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                             .+... .....|.++..+|.+..+++|-.++.+.+......+..    .+..|.+-|.++.|.+.|     .+
T Consensus       585 -------qlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky----qlhlheScVLSlKFa~cG-----kw  647 (705)
T KOG0639|consen  585 -------QLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY----QLHLHESCVLSLKFAYCG-----KW  647 (705)
T ss_pred             -------hhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccce----eecccccEEEEEEecccC-----ce
Confidence                   22221 23578999999999999999999999888877654432    455688999999999999     89


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +++.+.|.-+..|.+.-+             ..+....    ....|.++..+.|.       .+++||+.|....+|.+
T Consensus       648 fvStGkDnlLnawrtPyG-------------asiFqsk----E~SsVlsCDIS~dd-------kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRTPYG-------------ASIFQSK----ESSSVLSCDISFDD-------KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeecCchhhhhhccCccc-------------cceeecc----ccCcceeeeeccCc-------eEEEecCCCcceEEEEE
Confidence            999999999999988766             3333322    46789999999999       89999999999999986


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       704 ~  704 (705)
T KOG0639|consen  704 I  704 (705)
T ss_pred             e
Confidence            4

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.8e-20  Score=141.04  Aligned_cols=218  Identities=16%  Similarity=0.263  Sum_probs=158.1

Q ss_pred             ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeC
Q 037555           48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      ....+.+|...|+.+.|.|+. +++++++     .|..|++|++++..++..|   .+|...|.++.|+++|.+|++++.
T Consensus       127 ~~~~~~ghG~sINeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm  201 (385)
T KOG1034|consen  127 CSKNYRGHGGSINEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM  201 (385)
T ss_pred             hccceeccCccchhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence            456778999999999999965 5777774     4899999999999998876   579999999999999999999999


Q ss_pred             CCeEEEEEeccCCCCcc---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555          124 DRQFSVFAIQRTGTGEI---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      |..|++|++...+-...                     ......+-.-|...|-|+.|-  |+++++-+-++.|..|..-
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence            99999999984321000                     000011223467777788776  6889999999999999872


Q ss_pred             -CCccee----------eeeecCCCCCceEEE--EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555          183 -NKSSVK----------QILALPPFNSSVTAL--SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       183 -~~~~~~----------~~~~~~~~~~~v~~~--~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                       -.+.+.          .+..+.-....|+-+  +|.|..     ..|+.|.+.|.|.+||++..+....          
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-----~~la~gnq~g~v~vwdL~~~ep~~~----------  344 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-----KMLALGNQSGKVYVWDLDNNEPPKC----------  344 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-----HHHhhccCCCcEEEEECCCCCCccC----------
Confidence             111111          111222223344444  445555     7999999999999999998754311          


Q ss_pred             eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       ..+. .......|...+|+.|+       ..|+....|++|.-||-
T Consensus       345 -ttl~-~s~~~~tVRQ~sfS~dg-------s~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  345 -TTLT-HSKSGSTVRQTSFSRDG-------SILVLVCDDGTVWRWDR  382 (385)
T ss_pred             -ceEE-eccccceeeeeeecccC-------cEEEEEeCCCcEEEEEe
Confidence             1111 11235689999999999       89999999999998884

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.6e-20  Score=147.47  Aligned_cols=197  Identities=14%  Similarity=0.231  Sum_probs=158.4

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      -.|++......++++|     +..+.|+|||++...+.+.+.+|...|+++.++....+|++++..|.|.|..+.+... 
T Consensus        82 ~~Cv~~~s~S~y~~sg-----G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-  155 (673)
T KOG4378|consen   82 AFCVACASQSLYEISG-----GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-  155 (673)
T ss_pred             HHHHhhhhcceeeecc-----CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-
Confidence            3455555555788888     4589999999996666677889999999999999999999999999999999887432 


Q ss_pred             ccceeeeEEeecc-CCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          139 EIDYQLIARQEAH-KRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       139 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                            ...+... ...|.-+.++|..+ +|.+++++|.|.+||+....+...  -...|..+...++|+|..+    .+
T Consensus       156 ------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--~~~~HsAP~~gicfspsne----~l  223 (673)
T KOG4378|consen  156 ------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--ASEAHSAPCRGICFSPSNE----AL  223 (673)
T ss_pred             ------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc--hhhhccCCcCcceecCCcc----ce
Confidence                  2233322 34567899999765 566788999999999998777652  2346899999999999885    78


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      |++.+.|..|.+||.+..             .....+.    ...+...++|.++|       .+|+.|...|.|..||+
T Consensus       224 ~vsVG~Dkki~~yD~~s~-------------~s~~~l~----y~~Plstvaf~~~G-------~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQ-------------ASTDRLT----YSHPLSTVAFSECG-------TYLCAGNSKGELIAYDM  279 (673)
T ss_pred             EEEecccceEEEeecccc-------------cccceee----ecCCcceeeecCCc-------eEEEeecCCceEEEEec
Confidence            999999999999999865             2222222    46788999999999       89999999999999998


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       280 R  280 (673)
T KOG4378|consen  280 R  280 (673)
T ss_pred             c
Confidence            6

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.5e-21  Score=166.76  Aligned_cols=209  Identities=15%  Similarity=0.256  Sum_probs=164.6

Q ss_pred             eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeecc--ccccccEEEEEEcCC-CCEEEEEeCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHD-DNLLLSVSRD  124 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d  124 (298)
                      +.+...|++.|..+.|++.+. .||+|     +.+|.|.|||+...+.-...  ....+.|.+++|+.. ...|++++.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASG-----a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s  183 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASG-----ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS  183 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeecc-----CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC
Confidence            456678999999999999766 88888     56999999999875444333  235678999999874 4578889999


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccC--CceEEEEEccCC-CEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCC
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHK--RIIWSCSWNPFG-HEFATGSRD---KTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                      |.+.|||++..       +.+..+..+.  ..+..++|+|+. ..+++++.|   -.|.+||+|......  ..+.+|+.
T Consensus       184 g~~~iWDlr~~-------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~--k~~~~H~~  254 (1049)
T KOG0307|consen  184 GRAVIWDLRKK-------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL--KILEGHQR  254 (1049)
T ss_pred             CCceeccccCC-------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch--hhhccccc
Confidence            99999999973       3344444443  347789999976 566666654   359999999755432  25678999


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .|.++.|++.+.    .++++++.|+.|.+|+..++             +.+..   +.....++..+.|+|..+     
T Consensus       255 GilslsWc~~D~----~lllSsgkD~~ii~wN~~tg-------------Evl~~---~p~~~nW~fdv~w~pr~P-----  309 (1049)
T KOG0307|consen  255 GILSLSWCPQDP----RLLLSSGKDNRIICWNPNTG-------------EVLGE---LPAQGNWCFDVQWCPRNP-----  309 (1049)
T ss_pred             ceeeeccCCCCc----hhhhcccCCCCeeEecCCCc-------------eEeee---cCCCCcceeeeeecCCCc-----
Confidence            999999999885    79999999999999999987             44444   334678999999999885     


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                       ..++.++.||.|.|+.+.
T Consensus       310 -~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  310 -SVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             -chhhhheeccceeeeeee
Confidence             689999999999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.7e-20  Score=149.16  Aligned_cols=234  Identities=19%  Similarity=0.303  Sum_probs=169.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-ccccccEEEEEEcC--CCCEEEEEeCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-QSHSLTVTQIRFSH--DDNLLLSVSRD  124 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d  124 (298)
                      .-..|.||++.|+|+.|+.+|.+|++|     ++|-.+.|||....+.+..+ .+|...|.++.|-|  +..++++|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SG-----SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASG-----SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeec-----CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            346688999999999999999999999     45899999999888888776 48999999999999  56689999999


Q ss_pred             CeEEEEEeccCCCCccc---eeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCccee-------eeeec
Q 037555          125 RQFSVFAIQRTGTGEID---YQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVK-------QILAL  193 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~-------~~~~~  193 (298)
                      ..|+++|+...+.+..+   ......+..|...|..++..|++ +.|.+++.||+|+-+|++......       .+..+
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            99999999864433221   23344556788999999999988 899999999999999999743222       11111


Q ss_pred             CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc-----cCCCCCCcceeeeeccCC-----c-c---
Q 037555          194 PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV-----STPAPSTANIIIRFDPFA-----C-H---  259 (298)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~-~---  259 (298)
                      ...--...++..+|..+    .+|++|+.|...++||.+....+..     ...++....++.-+.+..     + .   
T Consensus       197 ~~~lielk~ltisp~rp----~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~  272 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRP----YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY  272 (758)
T ss_pred             chhhheeeeeeecCCCC----ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence            12223467899999886    8999999999999999643221111     111122223333332211     0 0   


Q ss_pred             cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          260 VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       260 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      -..++-+.|+|+|.      .+|++-+.+ .|+++|++
T Consensus       273 ~~~~t~vtfnpNGt------ElLvs~~gE-hVYlfdvn  303 (758)
T KOG1310|consen  273 ITCCTYVTFNPNGT------ELLVSWGGE-HVYLFDVN  303 (758)
T ss_pred             eeeeEEEEECCCCc------EEEEeeCCe-EEEEEeec
Confidence            11266789999985      677776654 68888874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=141.78  Aligned_cols=201  Identities=9%  Similarity=0.172  Sum_probs=161.7

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEe
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAI  132 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~  132 (298)
                      .+.|+++.|+|..+.|++++     .|+.++||.++.  ...++.+.-...+|.+++|.|+|. .+++++....++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            46899999999999999995     599999999863  234455555678999999999998 8999999999999999


Q ss_pred             ccCCCCccceeeeEEeeccC-CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          133 QRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      .+.+.     ..+....++. ..+....++|++++|+..+..|.|.+....+++.+.   .++ ..+.|..++|+.++  
T Consensus       288 e~ak~-----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~---s~K-ieG~v~~~~fsSds--  356 (514)
T KOG2055|consen  288 ETAKV-----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT---SFK-IEGVVSDFTFSSDS--  356 (514)
T ss_pred             ccccc-----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh---eee-eccEEeeEEEecCC--
Confidence            87542     2233333333 356778899999999999999999999999988877   554 57889999999888  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         ..|++.+.+|.|.+||++..             .++..+..-.  .-.-++++.++++       .+||+|+..|.|
T Consensus       357 ---k~l~~~~~~GeV~v~nl~~~-------------~~~~rf~D~G--~v~gts~~~S~ng-------~ylA~GS~~GiV  411 (514)
T KOG2055|consen  357 ---KELLASGGTGEVYVWNLRQN-------------SCLHRFVDDG--SVHGTSLCISLNG-------SYLATGSDSGIV  411 (514)
T ss_pred             ---cEEEEEcCCceEEEEecCCc-------------ceEEEEeecC--ccceeeeeecCCC-------ceEEeccCcceE
Confidence               67888888999999999987             6666665321  1233567888998       899999999999


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      .|||.+
T Consensus       412 NIYd~~  417 (514)
T KOG2055|consen  412 NIYDGN  417 (514)
T ss_pred             EEeccc
Confidence            999853

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=4.6e-19  Score=145.41  Aligned_cols=209  Identities=14%  Similarity=0.183  Sum_probs=153.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .|..++|-|||..|+.+.      +..+.+||.+.|..++++++|...|.+++|+.||+.+++|+.|..|.+|.....+.
T Consensus        14 ci~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             chheeEECCCCceEEEec------CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence            799999999999888773      67899999999999999999999999999999999999999999999998764321


Q ss_pred             Ccc-ceeeeE---------------------------Eeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555          138 GEI-DYQLIA---------------------------RQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV  187 (298)
Q Consensus       138 ~~~-~~~~~~---------------------------~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  187 (298)
                      ... ....++                           ....  ....+.+++|..||++|+.|-.+|+|.+-+-. ++..
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek  166 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK  166 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence            100 000000                           0001  12457788899999999999999999987543 3333


Q ss_pred             eeeeecCCCCCceEEEEEeeccc-----------------------------------------cCCccEEEEeecCCcE
Q 037555          188 KQILALPPFNSSVTALSWVGLDR-----------------------------------------QKNHGFLAVGMESGVI  226 (298)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~-----------------------------------------~~~~~~l~~g~~dg~i  226 (298)
                      ..+...-+.+++|.+++|+|...                                         .+++++++.|+.|+.+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence            33333345678899999999754                                         3345566666666666


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++|....              -.+..   ......+|++++..|++       +.++.|+.||+|-.|++-
T Consensus       247 ~~fTR~G--------------vrLGT---vg~~D~WIWtV~~~PNs-------Q~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  247 SLFTRDG--------------VRLGT---VGEQDSWIWTVQAKPNS-------QYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEeecC--------------eEEee---ccccceeEEEEEEccCC-------ceEEEEEccCeeehhhhH
Confidence            6654321              11222   33367899999999999       899999999999998864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=134.92  Aligned_cols=228  Identities=14%  Similarity=0.244  Sum_probs=164.4

Q ss_pred             ceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee
Q 037555           27 VPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA   95 (298)
Q Consensus        27 v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~   95 (298)
                      ..++.|+ +-+..++.+      -+|+     ..+.+.+|..+|++++||++|+.|++++.     |..|.+||+..|.+
T Consensus        26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCc
Confidence            5677777 667777776      2444     35678899999999999999999999965     89999999988876


Q ss_pred             eeccccccccEEEEE-----------------------------------------------EcCCCCEEEEEeCCCeEE
Q 037555           96 MGRLQSHSLTVTQIR-----------------------------------------------FSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        96 ~~~~~~~~~~v~~~~-----------------------------------------------~~~~~~~l~~~~~dg~i~  128 (298)
                      ++.+. ..++|+.+.                                               |.+.|+++++|...|.+.
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            65543 233333332                                               444478899999999999


Q ss_pred             EEEeccCCCCccceeeeEEeeccC-CceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee---eeeecCCCCC-----c
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK---QILALPPFNS-----S  199 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~-----~  199 (298)
                      ++|..+       .+++..++-.. ..|..+.++..++.|+.-+.|..||.|+++.-....   .....+..+.     .
T Consensus       179 v~~a~t-------~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  179 VYDAET-------LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             EEecch-------heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            999887       56666665544 788999999999999999999999999987422110   0000011112     2


Q ss_pred             eEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCC
Q 037555          200 VTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNS  277 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~  277 (298)
                      -.+++|+.++     .|++.|+. -..++||....+             ..++.++   |.. ....++.|+|-.     
T Consensus       252 Wk~ccfs~dg-----eYv~a~s~~aHaLYIWE~~~G-------------sLVKILh---G~kgE~l~DV~whp~r-----  305 (405)
T KOG1273|consen  252 WKKCCFSGDG-----EYVCAGSARAHALYIWEKSIG-------------SLVKILH---GTKGEELLDVNWHPVR-----  305 (405)
T ss_pred             hhheeecCCc-----cEEEeccccceeEEEEecCCc-------------ceeeeec---CCchhheeecccccce-----
Confidence            3456677666     67777664 467999998887             6666653   333 567889999987     


Q ss_pred             cceEEEeeeCCCcEEEeEec
Q 037555          278 RTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       278 ~~~~l~s~~~d~~i~iw~~~  297 (298)
                        ..+++- ..|.++||...
T Consensus       306 --p~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  306 --PIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             --eeeeec-cCCceEEEEee
Confidence              677777 67899999753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=137.43  Aligned_cols=194  Identities=17%  Similarity=0.300  Sum_probs=150.6

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ..+|++.     ..|.|++||..+++.+..|.+++..+..++|..  ....+.+|+.||+|++||++....     ....
T Consensus        41 ~~vav~l-----Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a~~  110 (376)
T KOG1188|consen   41 TAVAVSL-----SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SARI  110 (376)
T ss_pred             eeEEEEe-----cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hhhe
Confidence            4566664     389999999999999999999999999999987  456899999999999999997542     2223


Q ss_pred             EeeccC-CceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555          147 RQEAHK-RIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG  220 (298)
Q Consensus       147 ~~~~~~-~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g  220 (298)
                      ....+. .+..+++.+-.++.++.|+.    +-.|.+||+|..++ +..  -...|...|+++.|+|..+    ++|++|
T Consensus       111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DDVT~lrFHP~~p----nlLlSG  184 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDDVTQLRFHPSDP----NLLLSG  184 (376)
T ss_pred             eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCcceeEEecCCCC----CeEEee
Confidence            333343 45667777667788888863    66799999998776 332  2346899999999999987    899999


Q ss_pred             ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.||-|.|||+.......         ..+.    .-.|...|..+.|..++-      ..|.+-+...+..+|+++
T Consensus       185 SvDGLvnlfD~~~d~EeD---------aL~~----viN~~sSI~~igw~~~~y------krI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  185 SVDGLVNLFDTKKDNEED---------ALLH----VINHGSSIHLIGWLSKKY------KRIMCLTHMETFAIYELE  242 (376)
T ss_pred             cccceEEeeecCCCcchh---------hHHH----hhcccceeeeeeeecCCc------ceEEEEEccCceeEEEcc
Confidence            999999999998652211         1222    224788899999998762      468888889999999875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1.1e-19  Score=147.86  Aligned_cols=205  Identities=17%  Similarity=0.280  Sum_probs=143.8

Q ss_pred             EEEEcC---CCCEEEeEeccCCCCceEEEEEEcCCcee------eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           61 SLCCDH---QGKLVASSCKAQSTAAAEIWLWEVGSWKA------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        61 ~~~~s~---~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      +..|++   ....|+.+     .++|.|.++|....+.      +..+..|...|.++.|.|....|++++.|.++++||
T Consensus        54 ~~sFs~~~n~eHiLava-----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVA-----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD  128 (720)
T ss_pred             cccccCCCCccceEEEe-----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence            466765   24567777     6799999999865432      244567999999999999777899999999999999


Q ss_pred             eccCCCCccceeeeE--EeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcc--------------------ee
Q 037555          132 IQRTGTGEIDYQLIA--RQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSS--------------------VK  188 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~--------------------~~  188 (298)
                      +...       .+..  .+.+|...|.+++|.|. ...|++|+.||.|.|||++....                    ..
T Consensus       129 vk~s-------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  129 VKTS-------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             eccc-------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            9974       3333  37899999999999994 57899999999999999985331                    00


Q ss_pred             ----eeeecCCCCCceEE---EEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-
Q 037555          189 ----QILALPPFNSSVTA---LSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-  259 (298)
Q Consensus       189 ----~~~~~~~~~~~v~~---~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  259 (298)
                          .......+...|.+   +.+..+.     ..|++++. |+.|+|||++........++        .....+..| 
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe-----~tlaSaga~D~~iKVWDLRk~~~~~r~ep--------~~~~~~~t~s  268 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDE-----STLASAGAADSTIKVWDLRKNYTAYRQEP--------RGSDKYPTHS  268 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEecc-----ceeeeccCCCcceEEEeecccccccccCC--------CcccCccCcc
Confidence                00011123333444   4455555     57888776 99999999998755443211        111112223 


Q ss_pred             --cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          260 --VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       260 --~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                        ...+.++.....|       .+|.+.+.|+.|++|++.
T Consensus       269 krs~G~~nL~lDssG-------t~L~AsCtD~sIy~ynm~  301 (720)
T KOG0321|consen  269 KRSVGQVNLILDSSG-------TYLFASCTDNSIYFYNMR  301 (720)
T ss_pred             cceeeeEEEEecCCC-------CeEEEEecCCcEEEEecc
Confidence              4457777777777       555555559999999975

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.1e-19  Score=136.69  Aligned_cols=206  Identities=24%  Similarity=0.390  Sum_probs=152.1

Q ss_pred             CCceEEEEEc-------CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc--ccc---cEEEEEEcCCCCEEEEEeC
Q 037555           56 GNELFSLCCD-------HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS--HSL---TVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        56 ~~~v~~~~~s-------~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~  123 (298)
                      ...|...+|-       |+..++|+.+.     +.-|++||.-+|+....+.+  |..   ...+++|+|||..|++|- 
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr-----~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-  177 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSR-----DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-  177 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccc-----cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-
Confidence            3457777774       56677888854     88899999999998877654  333   457899999999988765 


Q ss_pred             CCeEEEEEeccCCCCccceeee-EEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLI-ARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      ...|++||+..+.........+ +...+..+.|.+++|+|.. ..++.++...++-||.-....++.   .+.+|.+.|+
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~---llggh~gGvT  254 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ---LLGGHGGGVT  254 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee---eecccCCCee
Confidence            6799999995544322111111 1123346788999999954 589999999999999888877777   6668999999


Q ss_pred             EEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc-eEEEEEe--ecCCCCCCC
Q 037555          202 ALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA-AVNRMAW--KTHEKPKNS  277 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~~~  277 (298)
                      .++|++++     +.|++|.. |-.|-.||++..+            .++..   +..|.. .=..|-|  .|.+     
T Consensus       255 hL~~~edG-----n~lfsGaRk~dkIl~WDiR~~~------------~pv~~---L~rhv~~TNQRI~FDld~~~-----  309 (406)
T KOG2919|consen  255 HLQWCEDG-----NKLFSGARKDDKILCWDIRYSR------------DPVYA---LERHVGDTNQRILFDLDPKG-----  309 (406)
T ss_pred             eEEeccCc-----CeecccccCCCeEEEEeehhcc------------chhhh---hhhhccCccceEEEecCCCC-----
Confidence            99999999     78888875 6789999999754            22333   334544 2234444  4666     


Q ss_pred             cceEEEeeeCCCcEEEeEec
Q 037555          278 RTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       278 ~~~~l~s~~~d~~i~iw~~~  297 (298)
                        ++|++|+.||.|++||++
T Consensus       310 --~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  310 --EILASGDTDGSVRVWDLK  327 (406)
T ss_pred             --ceeeccCCCccEEEEecC
Confidence              899999999999999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=2.8e-19  Score=132.67  Aligned_cols=240  Identities=18%  Similarity=0.287  Sum_probs=172.9

Q ss_pred             cCCCCCceeeeccCCCc----cccccc----CCCCce--------------EEeccCCCceEEEEEcC-CCCEEEeEecc
Q 037555           21 ESVPDAVPAVFTEPPIE----DQLAWH----TLWPES--------------HKLYGHGNELFSLCCDH-QGKLVASSCKA   77 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~----~~~~~~----~~~~~~--------------~~~~~h~~~v~~~~~s~-~~~~l~~~~~~   77 (298)
                      ..|+-+++.+.|.|+..    +.+++.    ++|...              .+-..+..++++..|+. +.+++.+++  
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS--  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS--  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence            37888889999987653    445554    577421              11235678999999987 556777774  


Q ss_pred             CCCCceEEEEEEcCCcee---eeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           78 QSTAAAEIWLWEVGSWKA---MGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                         -|.+..|||++++..   ..++-+|...|..++|...+ +.|++.+.||.+++||++....    ...+.+-.....
T Consensus       171 ---iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----STIIYE~p~~~~  243 (364)
T KOG0290|consen  171 ---IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----STIIYEDPSPST  243 (364)
T ss_pred             ---ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----ceEEecCCCCCC
Confidence               489999999998743   34466799999999999854 5899999999999999997553    222333222356


Q ss_pred             ceEEEEEccCC-CEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          154 IIWSCSWNPFG-HEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       154 ~v~~~~~~~~~-~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +...++|+++. +++|+-.. ...|.+.|+|....  .+..+..|++.|..++|.|...    ..|.++++|..+.+||+
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~----~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSS----SHICTAGDDCQALIWDL  317 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCC----ceeeecCCcceEEEEec
Confidence            78899999854 67776554 45799999997543  3347889999999999999886    89999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                      ........       ..++..   +. -.+.|+.+.|++..+      .+++.|.. +++.+
T Consensus       318 ~q~~~~~~-------~dPila---y~-a~~EVNqi~Ws~~~~------Dwiai~~~-kklei  361 (364)
T KOG0290|consen  318 QQMPRENG-------EDPILA---YT-AGGEVNQIQWSSSQP------DWIAICFG-KKLEI  361 (364)
T ss_pred             ccccccCC-------CCchhh---hh-ccceeeeeeecccCC------CEEEEEec-CeeeE
Confidence            86533111       012222   22 467899999997653      68777763 44544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-19  Score=139.85  Aligned_cols=198  Identities=18%  Similarity=0.252  Sum_probs=150.9

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      .+++|+++|..|+++     +.||.+|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++.   
T Consensus       148 k~vaf~~~gs~latg-----g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~---  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATG-----GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA---  218 (398)
T ss_pred             eEEEEcCCCCEeeec-----cccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---
Confidence            789999999999999     559999999988888888888899999999999999999999999 99999999852   


Q ss_pred             cceeeeEEee--ccCCceEEEEEccCC---C--EEEEeeCCCeEEEEEccCCccee--eeeecCCCCCceEEEEEeeccc
Q 037555          140 IDYQLIARQE--AHKRIIWSCSWNPFG---H--EFATGSRDKTVKIWAVENKSSVK--QILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       140 ~~~~~~~~~~--~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                          .+....  .-+.....+.|+.++   .  .++....-+.|+.||+.....-.  ...........|.+++.++++ 
T Consensus       219 ----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-  293 (398)
T KOG0771|consen  219 ----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-  293 (398)
T ss_pred             ----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-
Confidence                222222  223345667787766   2  33333445667777765432211  111222234579999999999 


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          ++++.|+.||.|-|++..+-             +....+  -+.|...|+.+.|+|+.       +++++.+.|..
T Consensus       294 ----kf~AlGT~dGsVai~~~~~l-------------q~~~~v--k~aH~~~VT~ltF~Pds-------r~~~svSs~~~  347 (398)
T KOG0771|consen  294 ----KFLALGTMDGSVAIYDAKSL-------------QRLQYV--KEAHLGFVTGLTFSPDS-------RYLASVSSDNE  347 (398)
T ss_pred             ----cEEEEeccCCcEEEEEecee-------------eeeEee--hhhheeeeeeEEEcCCc-------CcccccccCCc
Confidence                89999999999999999865             444444  34799999999999999       89999999998


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      +.+..+.
T Consensus       348 ~~v~~l~  354 (398)
T KOG0771|consen  348 AAVTKLA  354 (398)
T ss_pred             eeEEEEe
Confidence            8887664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=6.2e-19  Score=142.63  Aligned_cols=224  Identities=18%  Similarity=0.224  Sum_probs=151.9

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC--EEEEEeCCCe
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN--LLLSVSRDRQ  126 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~  126 (298)
                      ...+.||++.|.+|...|.|..|++|     +.||+|+||.+.+++++.+++ ..+.|.+++|+|.+.  .||++-. ..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasG-----sdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~  465 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASG-----SDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-EC  465 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeec-----CCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-Cc
Confidence            46678999999999999999999999     459999999999999999887 567899999999665  4444433 33


Q ss_pred             EEEEEeccCCCC----------------cc--------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---
Q 037555          127 FSVFAIQRTGTG----------------EI--------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---  173 (298)
Q Consensus       127 i~iwd~~~~~~~----------------~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  173 (298)
                      +.|.+..-+...                ..              ...-++..-.|...|..+.|+..|.+|++...+   
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN  545 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence            555543322100                00              000123334578899999999999999998654   


Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc----------CCC
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS----------TPA  243 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~----------~~~  243 (298)
                      ..|.|+++.....+.   .+....+.|.++.|+|..+     +|++++. ..|+|||+...+.....          ..+
T Consensus       546 ~~VliHQLSK~~sQ~---PF~kskG~vq~v~FHPs~p-----~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih  616 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQS---PFRKSKGLVQRVKFHPSKP-----YLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH  616 (733)
T ss_pred             ceEEEEecccccccC---chhhcCCceeEEEecCCCc-----eEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence            468999998766555   4444556778888888773     4444443 44666666443211100          000


Q ss_pred             CCCcc-----------------eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          244 PSTAN-----------------IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       244 ~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +...+                 ..+.+..+..|...+++++|++.-       .++++|+.||++.|+-
T Consensus       617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-------PLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-------PLFASGSDDGTVIVFH  678 (733)
T ss_pred             CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-------ceeeeecCCCcEEEEe
Confidence            00000                 001122356699999999999998       8999999999999874

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.5e-19  Score=135.66  Aligned_cols=230  Identities=15%  Similarity=0.232  Sum_probs=159.4

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------ceeeeccc-cccccEEEEEEcCCCCEEEEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------WKAMGRLQ-SHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      .+.+.+|.+.|.++.|+.++++|++|     +.|..+++|+++.      .+++.... .|...|.|++|...+.++++|
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SG-----GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASG-----GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeec-----CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence            34567899999999999999999999     5699999999863      34444433 366899999999988999999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      ..+++|.+-|+.+...     ..+.......+.|+.+..+|..+.|++.+.++.|.+||.+...................
T Consensus       124 ~~~~~VI~HDiEt~qs-----i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQS-----IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             CCcceeEeeeccccee-----eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence            9999999999997431     11222222345899999999999999999999999999987441111101111122222


Q ss_pred             EEEEeeccc-----------------------------------------------------------------------
Q 037555          202 ALSWVGLDR-----------------------------------------------------------------------  210 (298)
Q Consensus       202 ~~~~~~~~~-----------------------------------------------------------------------  210 (298)
                      ++.|+|..+                                                                       
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence            333333222                                                                       


Q ss_pred             -------cC---------------CccEEEEeecCCcEEEEEeeecccccccCC-------CCCCcceeeeeccCCcccc
Q 037555          211 -------QK---------------NHGFLAVGMESGVIELWSISVNRTNDVSTP-------APSTANIIIRFDPFACHVA  261 (298)
Q Consensus       211 -------~~---------------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  261 (298)
                             ++               +...+++|+.+-.|++|.+.........+.       .+...-.-..+..+++|..
T Consensus       279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS  358 (609)
T KOG4227|consen  279 FVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS  358 (609)
T ss_pred             eeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence                   00               013477788888888888764332222110       1111122234555789999


Q ss_pred             eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      .++.+.|+|..       ++|++.+..+.++||.
T Consensus       359 v~NQVRF~~H~-------~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  359 VPNQVRFSQHN-------NLLVSSGVENSFKLWS  385 (609)
T ss_pred             cccceeecCCc-------ceEeccchhhheeccc
Confidence            99999999998       8999999999999995

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=4.5e-19  Score=140.57  Aligned_cols=194  Identities=15%  Similarity=0.286  Sum_probs=158.2

Q ss_pred             CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCC-
Q 037555           44 TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDN-  116 (298)
Q Consensus        44 ~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-  116 (298)
                      ++|+.     .+.+++|+..|+++.++-...+||+++     ..|.|.|..+.++.....|... ...|.-+.|+|..+ 
T Consensus       104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-----~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-----DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-----cCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence            57863     567889999999999999999999995     4889999999988877777643 45667899999665 


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  195 (298)
                      +|.+++.+|.|.+||+...      .+.......|..+...++|+|.. .+|++.+.|.+|.+||++......   .+. 
T Consensus       179 lL~~asd~G~VtlwDv~g~------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~-  248 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGM------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLT-  248 (673)
T ss_pred             eeEeeccCCeEEEEeccCC------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc---eee-
Confidence            6678899999999999863      23345556799999999999954 678889999999999999776655   332 


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      ...+...++|.++|     .+|+.|...|.|..||++..+            .++..   ...|...|++++|-|..
T Consensus       249 y~~Plstvaf~~~G-----~~L~aG~s~G~~i~YD~R~~k------------~Pv~v---~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  249 YSHPLSTVAFSECG-----TYLCAGNSKGELIAYDMRSTK------------APVAV---RSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCcceeeecCCc-----eEEEeecCCceEEEEecccCC------------CCceE---eeecccceeEEEeeecc
Confidence            56788999999999     899999999999999999764            33333   34688999999998863

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=3.7e-19  Score=130.31  Aligned_cols=214  Identities=15%  Similarity=0.187  Sum_probs=138.9

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      ++..+++|.+.|+++.|-.+++ |.+|     ...|.|++|++++.+.+..++ .|...|+.+.--|+ ..+.+-+.|+.
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg-----~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSG-----LSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcc-----cccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence            4677889999999999988776 7777     458999999998876665555 34555555555554 34445555555


Q ss_pred             EEEEEecc------------------------------------------------------------------------
Q 037555          127 FSVFAIQR------------------------------------------------------------------------  134 (298)
Q Consensus       127 i~iwd~~~------------------------------------------------------------------------  134 (298)
                      +.+|++..                                                                        
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            55555443                                                                        


Q ss_pred             --------------------------CCCC---ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555          135 --------------------------TGTG---EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       135 --------------------------~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  185 (298)
                                                ....   +...+.......|..+|.++.+.+.-..=++|+.+..+..|++....
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence                                      1100   00012222233455555555555433333444444455555554321


Q ss_pred             ceeeee-ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555          186 SVKQIL-ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN  264 (298)
Q Consensus       186 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  264 (298)
                      ....+. .+.-....+..+..-|++     +++++++.|++|+||..++.             +++..   +.-|.+.|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~-----KIlATAGWD~RiRVyswrtl-------------~pLAV---LkyHsagvn  297 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDG-----KILATAGWDHRIRVYSWRTL-------------NPLAV---LKYHSAGVN  297 (323)
T ss_pred             CcccccceEEecCCCccceEEccCC-----cEEeecccCCcEEEEEeccC-------------Cchhh---hhhhhccee
Confidence            111000 111123457778888888     89999999999999999887             44444   456999999


Q ss_pred             EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +++|+|+.       .++|+++.|++|.+|++
T Consensus       298 ~vAfspd~-------~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDC-------ELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCC-------chhhhccCCceEEeeec
Confidence            99999998       79999999999999997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=2.1e-17  Score=132.69  Aligned_cols=182  Identities=14%  Similarity=0.140  Sum_probs=131.5

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      ..++++     ..|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||...       ......
T Consensus         2 ~~~~s~-----~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-------~~~~~~   68 (300)
T TIGR03866         2 KAYVSN-----EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-------GEVIGT   68 (300)
T ss_pred             cEEEEe-----cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-------CcEEEe
Confidence            466777     458999999999998888887554 46789999999876 5667889999999886       333444


Q ss_pred             eeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC-c
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG-V  225 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg-~  225 (298)
                      +..+.. +..++|+|+++.++++ +.++.|++||+++.+.+.   .+. ....+.+++|+|++     .+++++..++ .
T Consensus        69 ~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---~~~-~~~~~~~~~~~~dg-----~~l~~~~~~~~~  138 (300)
T TIGR03866        69 LPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---EIP-VGVEPEGMAVSPDG-----KIVVNTSETTNM  138 (300)
T ss_pred             ccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe---Eee-CCCCcceEEECCCC-----CEEEEEecCCCe
Confidence            443333 5678999999877655 568999999999876554   333 23446889999998     6888877765 4


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                      +.+||..+.             .....+.    ....+..++|+|++       .+| +++..++.|++||++
T Consensus       139 ~~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       139 AHFIDTKTY-------------EIVDNVL----VDQRPRFAEFTADG-------KELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             EEEEeCCCC-------------eEEEEEE----cCCCccEEEECCCC-------CEEEEEcCCCCEEEEEEcC
Confidence            677787654             2222221    12345679999998       666 555579999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=1.3e-18  Score=142.02  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=150.0

Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceee-e-cccc--ccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-G-RLQS--HSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~-~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      +.+..++|+--.   +..|.|-||+++....+ . .+.+  ....|+++.|.| |...|++++.||.|++|.+.......
T Consensus       588 can~~rvAVPL~---g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  588 CANNKRVAVPLA---GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             eeccceEEEEec---CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            334445554322   34689999999753221 1 1111  356799999999 77899999999999999998876655


Q ss_pred             cceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                      ....+...+..|...|+++.|+| -.+.|+++++|-+|++||+++.+...   .+.+|.+.|..++|+|+|     ..++
T Consensus       665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AWSpdG-----r~~A  736 (1012)
T KOG1445|consen  665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAWSPDG-----RRIA  736 (1012)
T ss_pred             ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh---eeccCcCceeEEEECCCC-----ccee
Confidence            55677788899999999999999 45789999999999999999988777   788999999999999999     7999


Q ss_pred             EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC----cEEEe
Q 037555          219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN----TVRVF  294 (298)
Q Consensus       219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iw  294 (298)
                      +.+.||+|+||+.++.+++..            .-...  ....-..|.|.-++       ++++..|.|.    .|.+|
T Consensus       737 tVcKDg~~rVy~Prs~e~pv~------------Eg~gp--vgtRgARi~wacdg-------r~viv~Gfdk~SeRQv~~Y  795 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSREQPVY------------EGKGP--VGTRGARILWACDG-------RIVIVVGFDKSSERQVQMY  795 (1012)
T ss_pred             eeecCceEEEeCCCCCCCccc------------cCCCC--ccCcceeEEEEecC-------cEEEEecccccchhhhhhh
Confidence            999999999999987754321            11000  11233456788888       7888777664    35555


Q ss_pred             E
Q 037555          295 Q  295 (298)
Q Consensus       295 ~  295 (298)
                      |
T Consensus       796 ~  796 (1012)
T KOG1445|consen  796 D  796 (1012)
T ss_pred             h
Confidence            4

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=3.2e-18  Score=128.95  Aligned_cols=193  Identities=16%  Similarity=0.211  Sum_probs=144.1

Q ss_pred             cCCCce---EEEEEcCCCCEEEeEeccCCCCceEEEEEEc-CCceee---eccc----cccccEEEEEEcC-CCCEEEEE
Q 037555           54 GHGNEL---FSLCCDHQGKLVASSCKAQSTAAAEIWLWEV-GSWKAM---GRLQ----SHSLTVTQIRFSH-DDNLLLSV  121 (298)
Q Consensus        54 ~h~~~v---~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~-~~~~~~---~~~~----~~~~~v~~~~~~~-~~~~l~~~  121 (298)
                      .|.+++   .+++|+|||..|++|      ....|+++|+ +.|+..   .++.    +..+-+.+++|+| +...++.+
T Consensus       153 dh~de~taAhsL~Fs~DGeqlfaG------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~g  226 (406)
T KOG2919|consen  153 DHQDEYTAAHSLQFSPDGEQLFAG------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVG  226 (406)
T ss_pred             hhHHhhhhheeEEecCCCCeEeec------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeee
Confidence            455544   489999999999998      3689999999 444322   1121    2367789999999 55589999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCC-c
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNS-S  199 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~-~  199 (298)
                      +....+-||.-..       ..++..+.+|.+.|+.+.|.++|+.|++|+. |-.|..||+|....+.  ..+..|.. .
T Consensus       227 sY~q~~giy~~~~-------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv--~~L~rhv~~T  297 (406)
T KOG2919|consen  227 SYGQRVGIYNDDG-------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV--YALERHVGDT  297 (406)
T ss_pred             cccceeeeEecCC-------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh--hhhhhhccCc
Confidence            9998998888776       5677888899999999999999999999985 7789999999765432  24444433 3


Q ss_pred             eEEEEE--eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCC
Q 037555          200 VTALSW--VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNS  277 (298)
Q Consensus       200 v~~~~~--~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  277 (298)
                      -..|.|  .|.+     ++|++|+.||.|++||+...-            .   ....+..+...++.++++|--     
T Consensus       298 NQRI~FDld~~~-----~~LasG~tdG~V~vwdlk~~g------------n---~~sv~~~~sd~vNgvslnP~m-----  352 (406)
T KOG2919|consen  298 NQRILFDLDPKG-----EILASGDTDGSVRVWDLKDLG------------N---EVSVTGNYSDTVNGVSLNPIM-----  352 (406)
T ss_pred             cceEEEecCCCC-----ceeeccCCCccEEEEecCCCC------------C---cccccccccccccceecCccc-----
Confidence            334444  4555     899999999999999998631            1   111245688899999999987     


Q ss_pred             cceEEEeeeCC
Q 037555          278 RTMQLASCGAD  288 (298)
Q Consensus       278 ~~~~l~s~~~d  288 (298)
                        .+++|++..
T Consensus       353 --pilatssGq  361 (406)
T KOG2919|consen  353 --PILATSSGQ  361 (406)
T ss_pred             --ceeeeccCc
Confidence              677777643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.2e-18  Score=130.51  Aligned_cols=228  Identities=13%  Similarity=0.184  Sum_probs=158.4

Q ss_pred             ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCceEEEEEEcCCceeeec--ccccc-ccEEEEEEcCCCCEEEEEe
Q 037555           48 ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHS-LTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~  122 (298)
                      .+..++++...++.+.|..  ....+.+++     .||+|++||+++......  +.++. .+..+++....++.++.|.
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt  136 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT  136 (376)
T ss_pred             hhheecCCCCcccceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc
Confidence            4677888999999999976  455677774     499999999987765544  34454 4566777766777787775


Q ss_pred             ----CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC
Q 037555          123 ----RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       123 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                          .+-.+.+||++..+.     .+-.....|...|++++|+| +-++|++||.||.|.+||++....--.+...-.+.
T Consensus       137 E~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~  211 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHG  211 (376)
T ss_pred             ccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhccc
Confidence                367899999997532     12334467999999999999 45899999999999999998654322222222367


Q ss_pred             CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC------------------------C--------
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP------------------------S--------  245 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------------------------~--------  245 (298)
                      ..|.++.|...+-    ..|.+-+......+|+++.+........+.                        .        
T Consensus       212 sSI~~igw~~~~y----krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~  287 (376)
T KOG1188|consen  212 SSIHLIGWLSKKY----KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD  287 (376)
T ss_pred             ceeeeeeeecCCc----ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc
Confidence            7799999998763    467777788889999887654221111000                        0        


Q ss_pred             -Ccceeee------------eccCC-cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          246 -TANIIIR------------FDPFA-CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       246 -~~~~~~~------------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       .-..+..            ...+. +|...|.++.|...+       .++.|||+||.+.+|..
T Consensus       288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-------~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  288 SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-------DVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-------ceeeccCCCceEEEEec
Confidence             0000011            11122 366778888888777       89999999999999973

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=7.4e-20  Score=153.17  Aligned_cols=206  Identities=15%  Similarity=0.304  Sum_probs=156.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      .++.+.+|.+.|+|..|...|.++++|     ++|..++||..++..++..+.+|.+.|+.++.+.+..++++++.|..|
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitg-----sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITG-----SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeec-----CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence            356678999999999999999999999     569999999999999999999999999999999998899999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEe
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWV  206 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~  206 (298)
                      ++|.+..       ..++..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+..-..+. ....-+.++.|.
T Consensus       257 rvWrl~~-------~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~  325 (1113)
T KOG0644|consen  257 RVWRLPD-------GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE  325 (1113)
T ss_pred             EEEecCC-------CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence            9999998       67788899999999999999954    67889999999998211100000000 011223333333


Q ss_pred             eccccCCccEEEEeecC-------------------------------------CcEEEEEeeecccccccCCCCCCcce
Q 037555          207 GLDRQKNHGFLAVGMES-------------------------------------GVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~d-------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                      ..+     .-+++|+.|                                     -.+.+|++.++             ..
T Consensus       326 ~~~-----~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-------------~l  387 (1113)
T KOG0644|consen  326 NNG-----DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-------------QL  387 (1113)
T ss_pred             ccc-----cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-------------hh
Confidence            333     233333333                                     34455555444             22


Q ss_pred             eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .+   .+.+|...+..|.++|-++      ....+++.||...|||+
T Consensus       388 ~H---~l~ghsd~~yvLd~Hpfn~------ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  388 LH---NLMGHSDEVYVLDVHPFNP------RIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             hh---hhcccccceeeeeecCCCc------HhhhhccCCCceEeeec
Confidence            22   2557899999999999875      67789999999999997

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=9.2e-18  Score=140.44  Aligned_cols=212  Identities=18%  Similarity=0.251  Sum_probs=154.9

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eec----cccccccEEEEEEcCCC--CEEEEEeCCC
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGR----LQSHSLTVTQIRFSHDD--NLLLSVSRDR  125 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg  125 (298)
                      .-..+|+|+.|+|....+++||    ..+|+|.+||+..+..  ...    ...|..+++.+.|..+.  .-+++++.||
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG  315 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG  315 (555)
T ss_pred             ecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence            4567899999999665555444    4599999999987654  222    23589999999997744  4599999999


Q ss_pred             eEEEEEeccCCCCcc----------------------------------------------------c----eeeeEEee
Q 037555          126 QFSVFAIQRTGTGEI----------------------------------------------------D----YQLIARQE  149 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~----------------------------------------------------~----~~~~~~~~  149 (298)
                      .|..|+++.-.....                                                    .    .+......
T Consensus       316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence            999998865321100                                                    0    01122344


Q ss_pred             ccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL  228 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v  228 (298)
                      .|.++|+.+.++|=+..++..+.|.++++|... ...++.   .+..+...+++++|+|..+    .+++++..||.|.+
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~---~~~~~~~~v~~vaWSptrp----avF~~~d~~G~l~i  468 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL---SLDSSPDYVTDVAWSPTRP----AVFATVDGDGNLDI  468 (555)
T ss_pred             ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---hhhhccceeeeeEEcCcCc----eEEEEEcCCCceeh
Confidence            578899999999966555444449999999987 444444   5555677799999999987    79999999999999


Q ss_pred             EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          229 WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ||+.....           .++...   .-+....+.+.|++.+       ..|+.|...|.+++|++.
T Consensus       469 WDLl~~~~-----------~Pv~s~---~~~~~~l~~~~~s~~g-------~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  469 WDLLQDDE-----------EPVLSQ---KVCSPALTRVRWSPNG-------KLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhhhcccc-----------CCcccc---cccccccceeecCCCC-------cEEEEecCCCcEEEEEcC
Confidence            99986532           222221   1235667778888888       899999999999999983

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.9e-16  Score=114.98  Aligned_cols=200  Identities=15%  Similarity=0.234  Sum_probs=143.3

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------eec--cccc-----cccEEEEEEcCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------MGR--LQSH-----SLTVTQIRFSHD  114 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------~~~--~~~~-----~~~v~~~~~~~~  114 (298)
                      .+...++|.++|+.++|.  ..+|++++      ||.|+-|.......      +-.  ...|     -..|+++-..|.
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g------dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG------DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc------CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence            355668999999999998  44666663      79999998653221      111  1112     236889999998


Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      .+-++.++.|+.++-||+++       ++..+.+++|.+.|.++.--.....+++|+.||++|+||+++.+....+...+
T Consensus       126 enSi~~AgGD~~~y~~dlE~-------G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  126 ENSILFAGGDGVIYQVDLED-------GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             CCcEEEecCCeEEEEEEecC-------CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence            77777777899999999998       78889999999999999986666789999999999999999998877443322


Q ss_pred             C-------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          195 P-------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       195 ~-------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      .       ....|-+++.+.       ..|++|+ ...+.+|.++..             .+...+.    -..++..+.
T Consensus       199 ~~~~lRp~~g~wigala~~e-------dWlvCGg-Gp~lslwhLrss-------------e~t~vfp----ipa~v~~v~  253 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVNE-------DWLVCGG-GPKLSLWHLRSS-------------ESTCVFP----IPARVHLVD  253 (325)
T ss_pred             ChhhcCcccCceeEEEeccC-------ceEEecC-CCceeEEeccCC-------------CceEEEe----cccceeEee
Confidence            1       112244444443       5777765 567999999987             3333332    345566777


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      |..         ..+++++..+.+.-|.+
T Consensus       254 F~~---------d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  254 FVD---------DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             eec---------ceEEEeccccceeeeee
Confidence            765         36677776667777765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=3.4e-16  Score=120.00  Aligned_cols=159  Identities=14%  Similarity=0.254  Sum_probs=128.6

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFSHDDNLLLSV--SRDRQFSVF  130 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  130 (298)
                      ..+|.++.++.  ++|+++-      ...|+|||+++.+.+.++..   +...+.++.+++.+.+++--  ...|.|.+|
T Consensus        87 pt~IL~VrmNr--~RLvV~L------ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCL------EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             CCceEEEEEcc--ceEEEEE------cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            35677888764  3555552      34599999999999988753   45556666666666777753  347999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      |..+       ...+..+..|++++-+++|+++|.+||+++..|+ ||++.+.+++.+.+++.-. ....|.+++|+|++
T Consensus       159 d~~n-------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  159 DTIN-------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDS  230 (391)
T ss_pred             Eccc-------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCC
Confidence            9988       7778888999999999999999999999999987 7999999999888665543 35679999999999


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecc
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                           .+|++.+..++|++|.+....
T Consensus       231 -----~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  231 -----QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -----CeEEEecCCCeEEEEEecccc
Confidence                 799999999999999997654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=1.3e-17  Score=133.72  Aligned_cols=186  Identities=15%  Similarity=0.218  Sum_probs=143.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      -+.+..|.+.|.|-.|+|+|.-|+++     ++||.|++|.- +|....++.....+|.|++|.|+.+.++-+-. +.+.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~-----GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~  169 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTA-----GEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHIS  169 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeee-----cCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEE
Confidence            34556899999999999999999999     57999999984 46666666667889999999998776555442 4455


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      |=.+..       ...+...+.|++-|.++.|++..+.+++|+.|-+.++||-.. ..+.   +...|..+|++++|.|+
T Consensus       170 IKpL~~-------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf---~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  170 IKPLAA-------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLF---TSAAEEYAITSVAFNPE  238 (737)
T ss_pred             Eeeccc-------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccc---cCChhccceeeeeeccc
Confidence            544443       233556789999999999999999999999999999999764 4444   66679999999999998


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                      .      .++.++. ..++   +.                        ....+.|..++|++||       ..++.|...
T Consensus       239 ~------~~~v~S~-nt~R---~~------------------------~p~~GSifnlsWS~DG-------TQ~a~gt~~  277 (737)
T KOG1524|consen  239 K------DYLLWSY-NTAR---FS------------------------SPRVGSIFNLSWSADG-------TQATCGTST  277 (737)
T ss_pred             c------ceeeeee-eeee---ec------------------------CCCccceEEEEEcCCC-------ceeeccccC
Confidence            4      4454442 2222   11                        1256789999999999       788888877


Q ss_pred             CcEEE
Q 037555          289 NTVRV  293 (298)
Q Consensus       289 ~~i~i  293 (298)
                      |.+.+
T Consensus       278 G~v~~  282 (737)
T KOG1524|consen  278 GQLIV  282 (737)
T ss_pred             ceEEE
Confidence            76643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.8e-17  Score=120.22  Aligned_cols=202  Identities=13%  Similarity=0.164  Sum_probs=144.8

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----------eeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      ..|.+-+++|.+++|++|.     .+|.|.+..+.+.          ..+..+++|.++|+.++|.  ..+|++|+ ||.
T Consensus        11 ~tvf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~   82 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL   82 (325)
T ss_pred             HHHHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence            4567778999999999994     5899999988542          2334468899999999998  44677776 599


Q ss_pred             EEEEEeccCCCCcc---cee---eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          127 FSVFAIQRTGTGEI---DYQ---LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       127 i~iwd~~~~~~~~~---~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      |+-|..+......-   .++   +.+.-...-..|+++...|..+.++.++.|+.++.||+++++...   .+.+|...+
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYv  159 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYV  159 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCccee
Confidence            99998765322100   000   111101122468899999988888888899999999999999887   788999999


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC------cc-cceEEEEEeecCCC
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA------CH-VAAVNRMAWKTHEK  273 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~~  273 (298)
                      .++.--...     ..+++|++||++++||.++.             +++..+.++.      .| ...|-+++-+.   
T Consensus       160 H~vv~R~~~-----~qilsG~EDGtvRvWd~kt~-------------k~v~~ie~yk~~~~lRp~~g~wigala~~e---  218 (325)
T KOG0649|consen  160 HSVVGRNAN-----GQILSGAEDGTVRVWDTKTQ-------------KHVSMIEPYKNPNLLRPDWGKWIGALAVNE---  218 (325)
T ss_pred             eeeeecccC-----cceeecCCCccEEEEecccc-------------ceeEEeccccChhhcCcccCceeEEEeccC---
Confidence            999885544     47999999999999999998             4444443221      22 23465555543   


Q ss_pred             CCCCcceEEEeeeCCCcEEEeEec
Q 037555          274 PKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            .+|+.|+ ...+.+|.++
T Consensus       219 ------dWlvCGg-Gp~lslwhLr  235 (325)
T KOG0649|consen  219 ------DWLVCGG-GPKLSLWHLR  235 (325)
T ss_pred             ------ceEEecC-CCceeEEecc
Confidence                  5666665 5578899875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=6.3e-17  Score=125.01  Aligned_cols=200  Identities=18%  Similarity=0.245  Sum_probs=154.6

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCC------------CceEEeccCCCceEEEEEcCCC-CEEEeEecc
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLW------------PESHKLYGHGNELFSLCCDHQG-KLVASSCKA   77 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~------------~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~   77 (298)
                      .-.+.||..+|..+.+.|-....++++      .+|            ..+..|.||...|--++|+|.- +.|++++  
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--  151 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--  151 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc--
Confidence            455689999999999997777777775      244            2478899999999999999964 5667773  


Q ss_pred             CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc-eE
Q 037555           78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-IW  156 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~  156 (298)
                         .|.+|.+|++.+++.+.++. |...|.++.|+.||.+|++.+.|..|+|||.+.       ...+..-.+|.+. -.
T Consensus       152 ---~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-------~~~v~e~~~heG~k~~  220 (472)
T KOG0303|consen  152 ---SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-------GTVVSEGVAHEGAKPA  220 (472)
T ss_pred             ---CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-------CcEeeecccccCCCcc
Confidence               49999999999999988888 999999999999999999999999999999998       5566666677652 23


Q ss_pred             EEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          157 SCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .+.|-.++..+-+|.   .+..+-+||..+.+...-+..+. ..+.|.---|.++..    -+.++|-.|+.|+.|.+..
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~----ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS----IVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC----EEEEEecCCcceEEEEecC
Confidence            455666777555554   46789999988776655444554 345555555666652    4455666899999999876


Q ss_pred             c
Q 037555          234 N  234 (298)
Q Consensus       234 ~  234 (298)
                      .
T Consensus       296 d  296 (472)
T KOG0303|consen  296 E  296 (472)
T ss_pred             C
Confidence            5

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1e-15  Score=117.43  Aligned_cols=195  Identities=14%  Similarity=0.221  Sum_probs=150.1

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .|-.+-|+.  .++|..+.   .+.+.++++++.....+..+. ....|.++.++.  +.|+++-.+ .|.|||++.   
T Consensus        48 ~IvEmLFSS--SLvaiV~~---~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~---  115 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSI---KQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKD---  115 (391)
T ss_pred             EEEEeeccc--ceeEEEec---CCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEeccc---
Confidence            455666654  47777765   345789999998877776665 667899999964  466666654 499999998   


Q ss_pred             CccceeeeEEeec---cCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          138 GEIDYQLIARQEA---HKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                          .+++.++..   +...+.++.+++.+.+++.-+  ..|.|.+||..+.+...   .+..|++++.+++|+++|   
T Consensus       116 ----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~~G---  185 (391)
T KOG2110|consen  116 ----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSPDG---  185 (391)
T ss_pred             ----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECCCC---
Confidence                666665543   344566666666666887654  46899999999888777   667899999999999999   


Q ss_pred             CccEEEEeecCCc-EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          213 NHGFLAVGMESGV-IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       213 ~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                        .+||++++.|+ |||+.+.++             +.+..|..- -....|.+++|+|++       .+|++.|..++|
T Consensus       186 --~llATASeKGTVIRVf~v~~G-------------~kl~eFRRG-~~~~~IySL~Fs~ds-------~~L~~sS~TeTV  242 (391)
T KOG2110|consen  186 --TLLATASEKGTVIRVFSVPEG-------------QKLYEFRRG-TYPVSIYSLSFSPDS-------QFLAASSNTETV  242 (391)
T ss_pred             --CEEEEeccCceEEEEEEcCCc-------------cEeeeeeCC-ceeeEEEEEEECCCC-------CeEEEecCCCeE
Confidence              89999999885 799999887             666666421 125679999999999       899999999999


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      ++|.|.
T Consensus       243 HiFKL~  248 (391)
T KOG2110|consen  243 HIFKLE  248 (391)
T ss_pred             EEEEec
Confidence            999875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=5e-17  Score=130.22  Aligned_cols=202  Identities=15%  Similarity=0.270  Sum_probs=144.1

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCcc-
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEI-  140 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-  140 (298)
                      .+--|.+|     -.-|.|.+.|....+..+.+.    .-...|+++.|-| +...++++-.+|.+.+||......... 
T Consensus       184 ~g~dllIG-----f~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p  258 (636)
T KOG2394|consen  184 KGLDLLIG-----FTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP  258 (636)
T ss_pred             CCcceEEe-----eccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence            44456666     236788888876532222121    1347899999999 455778888899999998643211000 


Q ss_pred             --------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          141 --------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       141 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                                          ...++..+..-.+.|..++|+||+++||+.+.||.+||+|..+.+.+.   ..+..-+..
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGL  335 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGL  335 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccce
Confidence                                011222222334578899999999999999999999999999877766   333445678


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC-----
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK-----  275 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----  275 (298)
                      .|++|+|++     ++|++|++|--|.||.+...             +.+..   -.+|..+|+.++|.|--...     
T Consensus       336 LCvcWSPDG-----KyIvtGGEDDLVtVwSf~er-------------RVVAR---GqGHkSWVs~VaFDpytt~~ee~~~  394 (636)
T KOG2394|consen  336 LCVCWSPDG-----KYIVTGGEDDLVTVWSFEER-------------RVVAR---GQGHKSWVSVVAFDPYTTSTEEWNN  394 (636)
T ss_pred             EEEEEcCCc-----cEEEecCCcceEEEEEeccc-------------eEEEe---ccccccceeeEeecccccccccccc
Confidence            999999999     89999999999999999876             44444   56899999999998421100     


Q ss_pred             -------------------------CC-----------cceEEEeeeCCCcEEEeEec
Q 037555          276 -------------------------NS-----------RTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       276 -------------------------~~-----------~~~~l~s~~~d~~i~iw~~~  297 (298)
                                               +.           ....|.+.+.|-.+.+||+.
T Consensus       395 ~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt  452 (636)
T KOG2394|consen  395 FSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT  452 (636)
T ss_pred             cccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence                                     00           12578899999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=1.5e-15  Score=127.40  Aligned_cols=209  Identities=26%  Similarity=0.466  Sum_probs=161.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  126 (298)
                      ....+..|...|.+++|+|++..+++++.    .++.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            45677899999999999999998888831    389999999998888888888999999999999988 5555599999


Q ss_pred             EEEEEeccCCCCccceeeeE-EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-eeeeeecCCCCCceEEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VKQILALPPFNSSVTALS  204 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~  204 (298)
                      +++||...       ..... .+..|.... ...|+|++..+++++.|+.+++|+++.... ..   .+..|...+.++.
T Consensus       223 i~~wd~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~  291 (466)
T COG2319         223 IRLWDLST-------GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHSSSVLSVA  291 (466)
T ss_pred             EEEEECCC-------CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE---EEecCCccEEEEE
Confidence            99997763       33444 567777765 448999998899999999999999997665 33   2245788999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |.|.+     ..+++++.|+.+.+|+....             ....... ...|...+..+.|.+++       ..++.
T Consensus       292 ~~~~~-----~~~~~~~~d~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~  345 (466)
T COG2319         292 FSPDG-----KLLASGSSDGTVRLWDLETG-------------KLLSSLT-LKGHEGPVSSLSFSPDG-------SLLVS  345 (466)
T ss_pred             ECCCC-----CEEEEeeCCCcEEEEEcCCC-------------ceEEEee-ecccCCceEEEEECCCC-------CEEEE
Confidence            99966     56777888888999987765             2222221 23577789999993332       24444


Q ss_pred             e-eCCCcEEEeEec
Q 037555          285 C-GADNTVRVFQVN  297 (298)
Q Consensus       285 ~-~~d~~i~iw~~~  297 (298)
                      + ..|+.+++|++.
T Consensus       346 ~~~~d~~~~~~~~~  359 (466)
T COG2319         346 GGSDDGTIRLWDLR  359 (466)
T ss_pred             eecCCCcEEeeecC
Confidence            4 688899999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.3e-16  Score=132.20  Aligned_cols=201  Identities=11%  Similarity=0.101  Sum_probs=137.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEe-CCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  125 (298)
                      .+.+..|...+....|+|+|+.|+.++.+  ..+..|++||+.+++.  +..+.+|   ...++|+|||+.|+.++ .+|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~--~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFE--NKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEec--CCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            45667788899999999999999988653  1246899999987754  3334433   34689999999887764 688


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .+.||.++...      .....+..+...+....|+|+++.|+..+ .+|...+|++........  .+ .+..  ....
T Consensus       271 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~  339 (429)
T PRK01742        271 VLNIYVMGANG------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQ  339 (429)
T ss_pred             cEEEEEEECCC------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCcc
Confidence            77777554321      12344455666788899999999877665 578888888754332221  12 2222  4578


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |+|++     ..|+..+.++ +.+||+.++.             .. .+..  .+  ...++.|+|++       .+|++
T Consensus       340 ~SpDG-----~~ia~~~~~~-i~~~Dl~~g~-------------~~-~lt~--~~--~~~~~~~sPdG-------~~i~~  388 (429)
T PRK01742        340 ISADG-----KTLVMINGDN-VVKQDLTSGS-------------TE-VLSS--TF--LDESPSISPNG-------IMIIY  388 (429)
T ss_pred             CCCCC-----CEEEEEcCCC-EEEEECCCCC-------------eE-EecC--CC--CCCCceECCCC-------CEEEE
Confidence            99998     6777776654 6668987652             11 1110  11  22457899999       89999


Q ss_pred             eeCCCcEEEeEe
Q 037555          285 CGADNTVRVFQV  296 (298)
Q Consensus       285 ~~~d~~i~iw~~  296 (298)
                      ++.++.+.+|.+
T Consensus       389 ~s~~g~~~~l~~  400 (429)
T PRK01742        389 SSTQGLGKVLQL  400 (429)
T ss_pred             EEcCCCceEEEE
Confidence            999998888875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=3.6e-17  Score=126.63  Aligned_cols=167  Identities=19%  Similarity=0.354  Sum_probs=137.2

Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555          103 SLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW  179 (298)
Q Consensus       103 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  179 (298)
                      ..+|..+.|.++.. .+++|+.|..|++|.+.......  ........+..|...|+.+.|+|+|+.|++|+++|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45789999988665 99999999999999998766544  2356677888999999999999999999999999999999


Q ss_pred             Ecc--------C-----CcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          180 AVE--------N-----KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       180 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                      -..        +     .+.......+.+|...|..++|+|++     .++++++.|..+++||+..+            
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-----~~l~s~s~dns~~l~Dv~~G------------  155 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-----NFLVSGSVDNSVRLWDVHAG------------  155 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-----ceeeeeeccceEEEEEeccc------------
Confidence            776        2     11122223455688999999999999     89999999999999999988            


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       +....   +..|..-|..++|.|-+       +++++-+.|...+.+.+.
T Consensus       156 -~l~~~---~~dh~~yvqgvawDpl~-------qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  156 -QLLAI---LDDHEHYVQGVAWDPLN-------QYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             -eeEee---ccccccccceeecchhh-------hhhhhhccCcccceeeee
Confidence             55555   44699999999999998       899999988876666543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=2.6e-15  Score=125.99  Aligned_cols=239  Identities=24%  Similarity=0.397  Sum_probs=176.0

Q ss_pred             cccCCCCCceeeeccCCCccccccc-----CCCC------ceEEeccCCC-ceEEEEE-cCCCCEEEeEeccCCCCceEE
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH-----TLWP------ESHKLYGHGN-ELFSLCC-DHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~h~~-~v~~~~~-s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      .+..|...+....+.+.........     .+|+      ....+.++.. .+..+.+ ++++..++....   ..++.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS---SLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC---CCCccE
Confidence            4567777777777774433222221     2232      3555555443 7777777 788873333322   348899


Q ss_pred             EEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555           86 WLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF  163 (298)
Q Consensus        86 ~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (298)
                      .+|+... ......+..|...|..+.|+|++..+++++. |+.+++|+...       ...+..+..|...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------GKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------CceEEeeccCCCceEEEEEcCC
Confidence            9999987 6777888889999999999999998888886 99999999986       4456677779999999999998


Q ss_pred             CC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          164 GH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       164 ~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                      +. .+++++.|+.|++||...+.....  .+..|.... -..|+|++     .++++++.|+.+++|+.+....      
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~------  275 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDG-----SLLASGSSDGTIRLWDLRSSSS------  275 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCC-----CEEEEecCCCcEEEeeecCCCc------
Confidence            87 555558999999998885544431  244555554 33788887     6888999999999999986521      


Q ss_pred             CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            ....+   ..|...|.++.|+|++       ..+++++.|+.+++|++.
T Consensus       276 ------~~~~~---~~~~~~v~~~~~~~~~-------~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         276 ------LLRTL---SGHSSSVLSVAFSPDG-------KLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             ------EEEEE---ecCCccEEEEEECCCC-------CEEEEeeCCCcEEEEEcC
Confidence                  12222   4578999999999977       677778889999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=5.6e-17  Score=130.53  Aligned_cols=202  Identities=20%  Similarity=0.295  Sum_probs=156.2

Q ss_pred             cccCCCCCceeeeccCCCccccccc------CCCC-------------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      ++..|.+.+..+.|. |.+..++++      .+|.             ++.+|++|.++|.|+++.+++..+.+|+    
T Consensus       289 tl~s~~d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg----  363 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG----  363 (577)
T ss_pred             eeecchhhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec----
Confidence            666777788887777 344444444      3553             4788999999999999999999999995    


Q ss_pred             CCceEEEEEEcCC-------c---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc---------
Q 037555           80 TAAAEIWLWEVGS-------W---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI---------  140 (298)
Q Consensus        80 ~~d~~i~vw~~~~-------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------  140 (298)
                       -||+|+.|++..       .   .....+.||.+.|+.+++++....|++++.||+++.|+.........         
T Consensus       364 -~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 -IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP  442 (577)
T ss_pred             -cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence             599999996542       1   22355789999999999999988999999999999999765443000         


Q ss_pred             -------------------------ceee---eEEee-------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555          141 -------------------------DYQL---IARQE-------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       141 -------------------------~~~~---~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  185 (298)
                                               ....   +..+.       .....+..+.++|...+.+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence                                     0000   00000       011346677888888999999999999999999999


Q ss_pred             ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+.   ....|...++++++.|.+     .+|++++.|+.+++|.+...
T Consensus       523 ~l~---s~~a~~~svtslai~~ng-----~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  523 ILH---SMVAHKDSVTSLAIDPNG-----PYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cch---heeeccceecceeecCCC-----ceEEeecCCceeehhhccch
Confidence            887   555788999999999999     69999999999999998654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.3e-16  Score=120.10  Aligned_cols=170  Identities=16%  Similarity=0.306  Sum_probs=139.1

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555           99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI  178 (298)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  178 (298)
                      +.-...+|+|.+|++|+..++.+.....|.||.......    ++...++..|...|+.++|+|..+.|++|+.|..-++
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV   81 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV   81 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence            333467899999999999999999999999999876543    6678899999999999999999999999999999999


Q ss_pred             EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555          179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC  258 (298)
Q Consensus       179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      |....+........+..++...+++.|+|.+     +.+++|+.-..|.||-++..+.          |-..+.+  -..
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-----nkFAVgSgar~isVcy~E~ENd----------WWVsKhi--kkP  144 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKE-----NKFAVGSGARLISVCYYEQEND----------WWVSKHI--KKP  144 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcC-----ceEEeccCccEEEEEEEecccc----------eehhhhh--CCc
Confidence            9995444433333555688999999999998     8999999999999998876521          1111111  124


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +...|++++|+|++       -+|++|+.|+..|++..
T Consensus       145 irStv~sldWhpnn-------VLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  145 IRSTVTSLDWHPNN-------VLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             cccceeeeeccCCc-------ceecccccCcceeEEEE
Confidence            78899999999999       89999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=5.5e-16  Score=129.90  Aligned_cols=188  Identities=16%  Similarity=0.206  Sum_probs=137.0

Q ss_pred             ceEEEEEEcCCc-eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           82 AAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        82 d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ++.+.+|++... .+...+. -...|.+++|+| +.++++.|..+|.|.+||++....... .........|..+++.+.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcCeEEEE
Confidence            357999999865 3333344 577899999999 677899999999999999987654221 222334456889999999


Q ss_pred             EccCC--CEEEEeeCCCeEEEEEccCCccee-------------------------------------------------
Q 037555          160 WNPFG--HEFATGSRDKTVKIWAVENKSSVK-------------------------------------------------  188 (298)
Q Consensus       160 ~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~-------------------------------------------------  188 (298)
                      |..+.  .-|++++.||.|..|+++......                                                 
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            98744  459999999999999887521100                                                 


Q ss_pred             -----e------eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC
Q 037555          189 -----Q------ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA  257 (298)
Q Consensus       189 -----~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (298)
                           .      ...+..|.++|+++.++|.+.    .++++++ |..++||......            .++..   +.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~----k~fls~g-DW~vriWs~~~~~------------~Pl~~---~~  438 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP----KNFLSVG-DWTVRIWSEDVIA------------SPLLS---LD  438 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCcc----ceeeeec-cceeEeccccCCC------------Ccchh---hh
Confidence                 0      112234567788888888884    5555555 8999999876221            23332   34


Q ss_pred             cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+...|++++|||..+      ..++++..||.|.+|||.
T Consensus       439 ~~~~~v~~vaWSptrp------avF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRP------AVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             hccceeeeeEEcCcCc------eEEEEEcCCCceehhhhh
Confidence            5677799999999885      789999999999999985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=1.4e-16  Score=127.74  Aligned_cols=165  Identities=16%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--------------c--------------eeeeccccccccEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--------------W--------------KAMGRLQSHSLTVT  107 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--------------~--------------~~~~~~~~~~~~v~  107 (298)
                      +..|+|+.|-|.+..++..+    ..+|.+++||.+-              +              .++..+.-....|.
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a----~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in  294 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVA----HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN  294 (636)
T ss_pred             ccceEEEEEEeCCCceEEEE----EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence            47899999998655444433    2488999997531              0              11111222345788


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555          108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV  187 (298)
Q Consensus       108 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  187 (298)
                      .++|+|||++||+.+.||.++|||..+       ..++...+..-+...|++|+|||++|++|+.|--|.||.+...+.+
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt-------~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDT-------QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccH-------HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            999999999999999999999999987       4555555556678999999999999999999999999999998887


Q ss_pred             eeeeecCCCCCceEEEEEeeccc------------------------------c-------------CCccEEEEeecCC
Q 037555          188 KQILALPPFNSSVTALSWVGLDR------------------------------Q-------------KNHGFLAVGMESG  224 (298)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~------------------------------~-------------~~~~~l~~g~~dg  224 (298)
                      .   .-++|++.|..++|.|.-.                              +             .-...+.+.+.|.
T Consensus       368 A---RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDT  444 (636)
T KOG2394|consen  368 A---RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDT  444 (636)
T ss_pred             E---eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccc
Confidence            7   7789999999999995211                              0             0124677788999


Q ss_pred             cEEEEEeeec
Q 037555          225 VIELWSISVN  234 (298)
Q Consensus       225 ~i~vwd~~~~  234 (298)
                      .+.+||+...
T Consensus       445 qlcLWDlteD  454 (636)
T KOG2394|consen  445 QLCLWDLTED  454 (636)
T ss_pred             eEEEEecchh
Confidence            9999999754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=1e-17  Score=140.53  Aligned_cols=239  Identities=15%  Similarity=0.201  Sum_probs=169.0

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      +..+-+|.++|+|+.|. ..+..+.++      ++|.     +.....||.+.|+.++.+.+..++|+++     .|..|
T Consensus       183 ikrLlgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS-----~D~vI  256 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS-----NDKVI  256 (1113)
T ss_pred             HHHHHhhhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-----cCceE
Confidence            44567999999999999 666667666      5674     4667789999999999999999999995     49999


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------ceeeeEEe----------
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------DYQLIARQ----------  148 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~----------  148 (298)
                      ++|.+..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+-......       ....+..+          
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            999999999999999999999999999954    778899999999882110000       00000000          


Q ss_pred             ------eccCCceEEEEEccCCCEE-----------EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          149 ------EAHKRIIWSCSWNPFGHEF-----------ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       149 ------~~~~~~v~~~~~~~~~~~l-----------~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                            ......+..++|....-.+           +++-.+-.+++|++-++....   .+.+|...+..+.++|.++ 
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~-  408 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNP-  408 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCc-
Confidence                  0001111222232222222           333345567888888887666   5667888999999999885 


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .+..+++.||...|||+-.+             .+++...  .+ ...+..-+|+++|       ..++....-|.+
T Consensus       409 ---ri~msag~dgst~iwdi~eg-------------~pik~y~--~g-h~kl~d~kFSqdg-------ts~~lsd~hgql  462 (1113)
T KOG0644|consen  409 ---RIAMSAGYDGSTIIWDIWEG-------------IPIKHYF--IG-HGKLVDGKFSQDG-------TSIALSDDHGQL  462 (1113)
T ss_pred             ---HhhhhccCCCceEeeecccC-------------Ccceeee--cc-cceeeccccCCCC-------ceEecCCCCCce
Confidence               67778899999999999877             4444432  34 4566678899998       566655555666


Q ss_pred             EEeE
Q 037555          292 RVFQ  295 (298)
Q Consensus       292 ~iw~  295 (298)
                      .|..
T Consensus       463 ~i~g  466 (1113)
T KOG0644|consen  463 YILG  466 (1113)
T ss_pred             EEec
Confidence            6543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.3e-17  Score=131.06  Aligned_cols=178  Identities=17%  Similarity=0.229  Sum_probs=137.1

Q ss_pred             eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-EeeccCCceEEEEEcc--CCCEEEEeeC
Q 037555           96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWSCSWNP--FGHEFATGSR  172 (298)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~~~  172 (298)
                      .+.+.+|++.|.+++|+.+|.+|++|+.|-.+.|||.-.       .+++. .-.+|...|.++.|-|  ..+.+++|..
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-------cceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence            356889999999999999999999999999999999875       33333 4467999999999999  4578899999


Q ss_pred             CCeEEEEEccCCcc-------eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          173 DKTVKIWAVENKSS-------VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       173 dg~i~~wd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                      |..|+++|+...+.       ......+..|...|..++-.|.++    ..+.++++||.|+-||++.........    
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P----htfwsasEDGtirQyDiREph~c~p~~----  187 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP----HTFWSASEDGTIRQYDIREPHVCNPDE----  187 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC----ceEEEecCCcceeeecccCCccCCccc----
Confidence            99999999985221       112224556888899999999987    899999999999999998743221100    


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                        .+...+..+...--...++..+|..+      .+|+.|+.|-..++||.
T Consensus       188 --~~~~~l~ny~~~lielk~ltisp~rp------~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  188 --DCPSILVNYNPQLIELKCLTISPSRP------YYLAVGGSDPFARLYDR  230 (758)
T ss_pred             --cccHHHHHhchhhheeeeeeecCCCC------ceEEecCCCchhhhhhh
Confidence              12222222222335677899999875      89999999999999984

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.9e-15  Score=126.62  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      .|...++|.++||+++++|++     ..||+|.+|.--.  ..  ....+.-|...|.++.|+++|.+|++|+..|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~-----d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAG-----DSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             hhcccceeEEeccccceEEEe-----ccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence            477779999999999999999     6699999997533  21  22346678899999999999999999999999999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  183 (298)
                      |.+.++.        .+-+..-.++|..+.++||+.+.+....|+.|.+....+
T Consensus       278 Wq~~T~~--------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  278 WQLETGK--------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             EeecCCC--------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            9999853        233444568899999999999999998999988877644

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=9.5e-15  Score=112.03  Aligned_cols=213  Identities=15%  Similarity=0.261  Sum_probs=141.9

Q ss_pred             ccccceeeeecCcccccccCC-CCCceeeeccCCCccccccc-----CCCC-------------------ceEEeccCCC
Q 037555            3 AATRETVERHGNDGLDTLESV-PDAVPAVFTEPPIEDQLAWH-----TLWP-------------------ESHKLYGHGN   57 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----~~~~-------------------~~~~~~~h~~   57 (298)
                      +...+.++... ++...++.. ...|.++++.|-....++.+     -+|.                   .+..-.|| .
T Consensus       119 ddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~  196 (445)
T KOG2139|consen  119 DDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-N  196 (445)
T ss_pred             CcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-c
Confidence            34566676666 555555543 34688999997655544443     1332                   12233455 6


Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      +|+++.|++||..+++++.    .+..|.|||..++..+-...-..+.++-+.|+||+.+|+++.-|+..++|+....  
T Consensus       197 pVtsmqwn~dgt~l~tAS~----gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--  270 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASF----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--  270 (445)
T ss_pred             eeeEEEEcCCCCEEeeccc----CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc--
Confidence            8999999999999999985    5889999999988766544445677889999999999999999999999965542  


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc------------eeeeeecC---------CC
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS------------VKQILALP---------PF  196 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------------~~~~~~~~---------~~  196 (298)
                          +...+... ..+.|...+|+|+|++|+.... |.-++|.+.-...            ...+..++         -.
T Consensus       271 ----wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~  344 (445)
T KOG2139|consen  271 ----WTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC  344 (445)
T ss_pred             ----ceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence                22222222 3458999999999987765543 3334444432110            00000111         11


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCC--------cEEEEEeeec
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESG--------VIELWSISVN  234 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg--------~i~vwd~~~~  234 (298)
                      .+++.+++|.|.|     ++|++....+        .|.+||.+..
T Consensus       345 cgeaq~lawDpsG-----eyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  345 CGEAQCLAWDPSG-----EYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             cCccceeeECCCC-----CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            4568899999999     7898876543        4667776653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=2.4e-16  Score=115.68  Aligned_cols=163  Identities=13%  Similarity=0.239  Sum_probs=126.2

Q ss_pred             cCCCceEEEEEcC-CC-CEEEeEeccCCCCceEEEEEEcCCce----------eeeccccccccEEEEEEcCCCCEEEEE
Q 037555           54 GHGNELFSLCCDH-QG-KLVASSCKAQSTAAAEIWLWEVGSWK----------AMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        54 ~h~~~v~~~~~s~-~~-~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      +..+.++|..+.. ++ ..|+.++    .++|.+.+||+.++.          .......|..+|.++.+.+.-+.=+++
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaG----yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAG----YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             cccCceeeeeccccccceEEEEEe----ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence            3456788888643 23 3444444    579999999999873          333345699999999998865566788


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      +.+-.+..|.++.....   ........-.+-.|..+..-||++.+|+++.|++||+|..++..++.   .+.-|...|.
T Consensus       224 ga~dkl~~~Sl~~s~gs---lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn  297 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGS---LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVN  297 (323)
T ss_pred             CccccceeeeeccccCc---ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhccee
Confidence            88888999998764322   11122222234567889999999999999999999999999998887   7777899999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +++|+|+.     +++++++.|++|.+|++
T Consensus       298 ~vAfspd~-----~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDC-----ELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCC-----chhhhccCCceEEeeec
Confidence            99999997     79999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=2.9e-17  Score=129.37  Aligned_cols=195  Identities=14%  Similarity=0.225  Sum_probs=162.6

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ......+.++.+|+.|+.|+.     .|.|-.+|..+++....+. -...|.++.|..+.+++|++- ...+.|||-.  
T Consensus       129 eFGPY~~~ytrnGrhlllgGr-----KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--  199 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGR-----KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--  199 (545)
T ss_pred             ccCCeeeeecCCccEEEecCC-----ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC--
Confidence            345678999999999999954     8999999999988877776 456799999998887776654 6789999965  


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                            +..+..++.| ..|..+.|-|-.-+|++++..|.++--|+.+++.+.   .+....+.+..|.-+|.+     .
T Consensus       200 ------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~N-----a  264 (545)
T KOG1272|consen  200 ------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYN-----A  264 (545)
T ss_pred             ------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCcc-----c
Confidence                  3445555544 568999999999999999999999999999999888   444466778889999987     7


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ++-+|...|+|.+|.....             .++..   +..|.++|.+|++.++|       ++++|.|.|..++|||
T Consensus       265 Vih~GhsnGtVSlWSP~sk-------------ePLvK---iLcH~g~V~siAv~~~G-------~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPNSK-------------EPLVK---ILCHRGPVSSIAVDRGG-------RYMATTGLDRKVKIWD  321 (545)
T ss_pred             eEEEcCCCceEEecCCCCc-------------chHHH---HHhcCCCcceEEECCCC-------cEEeecccccceeEee
Confidence            8999999999999998765             33222   44699999999999999       9999999999999999


Q ss_pred             ec
Q 037555          296 VN  297 (298)
Q Consensus       296 ~~  297 (298)
                      ++
T Consensus       322 lR  323 (545)
T KOG1272|consen  322 LR  323 (545)
T ss_pred             ec
Confidence            97

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=2.7e-14  Score=116.19  Aligned_cols=210  Identities=10%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFA  131 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd  131 (298)
                      .....+.|+|++++|++++.    .++.|.+|++++..    .+..+. +......++++|+++++++++ .++.|.+||
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~----~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASY----NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             CCceEEEECCCCCEEEEEEc----CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence            35678999999999998864    47899999996432    222222 334567889999999886554 569999999


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCC--c--ceeeeeecCC---CCCceEEE
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENK--S--SVKQILALPP---FNSSVTAL  203 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~--~--~~~~~~~~~~---~~~~v~~~  203 (298)
                      +................. .......+.|+|++++++++.. ++.|.+||++..  +  ....+...+.   .......+
T Consensus       155 ~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             ECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence            976221100000001111 1234578999999999988876 899999999742  2  1222211111   11223468


Q ss_pred             EEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          204 SWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      .++|++     .+++++.. ++.|.+|++.......         .....+.    -......+.++|++       ++|
T Consensus       234 ~~~pdg-----~~lyv~~~~~~~I~v~~i~~~~~~~---------~~~~~~~----~~~~p~~~~~~~dg-------~~l  288 (330)
T PRK11028        234 HITPDG-----RHLYACDRTASLISVFSVSEDGSVL---------SFEGHQP----TETQPRGFNIDHSG-------KYL  288 (330)
T ss_pred             EECCCC-----CEEEEecCCCCeEEEEEEeCCCCeE---------EEeEEEe----ccccCCceEECCCC-------CEE
Confidence            899998     67777754 7899999996531100         1111111    11244578999999       666


Q ss_pred             Eeee-CCCcEEEeEec
Q 037555          283 ASCG-ADNTVRVFQVN  297 (298)
Q Consensus       283 ~s~~-~d~~i~iw~~~  297 (298)
                      +++. .+++|.+|+++
T Consensus       289 ~va~~~~~~v~v~~~~  304 (330)
T PRK11028        289 IAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEccCCcEEEEEEc
Confidence            6555 58999999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3e-15  Score=129.02  Aligned_cols=204  Identities=20%  Similarity=0.294  Sum_probs=146.6

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCC
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .-++|.....+|.++     ++-..|+|||.+..+.+..+. +....|+++.-+- .|+.+++|..||.|++||.+....
T Consensus      1169 ~v~dWqQ~~G~Ll~t-----Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVT-----GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             eeeehhhhCCeEEec-----CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence            455677655555555     236899999999877766654 3455666665543 578999999999999999987654


Q ss_pred             CccceeeeEEeeccCCc--eEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCC---CCceEEEEEeecccc
Q 037555          138 GEIDYQLIARQEAHKRI--IWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPF---NSSVTALSWVGLDRQ  211 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~  211 (298)
                          ...+...+.|+..  |..+.+.+.|- .|++|+.||.|++||++...... ..++..+   .+..+++..++..  
T Consensus      1244 ----ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~ha-- 1316 (1387)
T KOG1517|consen 1244 ----DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHA-- 1316 (1387)
T ss_pred             ----cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCC--
Confidence                2356677788877  99999998764 59999999999999999853222 1122222   3358999999988  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .++++|+. +.|+||++........        +.-..+  +....+.+.+++|+|..       .+|+.|..|.+|
T Consensus      1317 ---piiAsGs~-q~ikIy~~~G~~l~~~--------k~n~~F--~~q~~gs~scL~FHP~~-------~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1317 ---PIIASGSA-QLIKIYSLSGEQLNII--------KYNPGF--MGQRIGSVSCLAFHPHR-------LLLAAGSADSTV 1375 (1387)
T ss_pred             ---CeeeecCc-ceEEEEecChhhhccc--------ccCccc--ccCcCCCcceeeecchh-------HhhhhccCCceE
Confidence               69999988 9999999975422111        000001  11234567999999998       789999999999


Q ss_pred             EEeEe
Q 037555          292 RVFQV  296 (298)
Q Consensus       292 ~iw~~  296 (298)
                      .||.-
T Consensus      1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred             EEeec
Confidence            99864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=1.5e-13  Score=111.78  Aligned_cols=217  Identities=10%  Similarity=0.136  Sum_probs=138.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-cee--eeccccccccEEEEEEcCCCCEEEEEeC-C
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSR-D  124 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d  124 (298)
                      ++.+. +.+....++++|++++|++++.    .++.|.+|+++. ++.  +.... .......++|+|+++++++++. +
T Consensus        28 ~~~~~-~~~~~~~l~~spd~~~lyv~~~----~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~  101 (330)
T PRK11028         28 LQVVD-VPGQVQPMVISPDKRHLYVGVR----PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA  101 (330)
T ss_pred             eeEEe-cCCCCccEEECCCCCEEEEEEC----CCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence            34443 3456778999999999988763    478899999863 322  22222 2334678999999998888764 8


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceee----eeecCCCCCc
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQ----ILALPPFNSS  199 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~----~~~~~~~~~~  199 (298)
                      +.|.+|+++.....   ......+. +......++++|+++++++++ .++.|.+||+.+...+..    ..... ....
T Consensus       102 ~~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~  176 (330)
T PRK11028        102 NCVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAG  176 (330)
T ss_pred             CeEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCC
Confidence            89999999742211   11122222 223467788999998886655 569999999986432211    00122 2345


Q ss_pred             eEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCCCCC
Q 037555          200 VTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  275 (298)
                      ...++|+|++     .+++++++ ++.|.+|++.......         .....+....   .+......+.++|++   
T Consensus       177 p~~~~~~pdg-----~~lyv~~~~~~~v~v~~~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~~i~~~pdg---  239 (330)
T PRK11028        177 PRHMVFHPNQ-----QYAYCVNELNSSVDVWQLKDPHGEI---------ECVQTLDMMPADFSDTRWAADIHITPDG---  239 (330)
T ss_pred             CceEEECCCC-----CEEEEEecCCCEEEEEEEeCCCCCE---------EEEEEEecCCCcCCCCccceeEEECCCC---
Confidence            6789999998     67777765 8999999997421000         1122221111   112234468899999   


Q ss_pred             CCcceEEEeee-CCCcEEEeEec
Q 037555          276 NSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                          ++|+++. .++.|.+|+++
T Consensus       240 ----~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        240 ----RHLYACDRTASLISVFSVS  258 (330)
T ss_pred             ----CEEEEecCCCCeEEEEEEe
Confidence                6777664 57899999873

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6e-16  Score=122.73  Aligned_cols=215  Identities=20%  Similarity=0.278  Sum_probs=162.7

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcC--CCCEEEEEeCCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSH--DDNLLLSVSRDR  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg  125 (298)
                      ...|..|.+.|..+.|+..|..|++|     +.|..|.+||..++.....+. +|...|....|-|  +...+++++.||
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~Sg-----SDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASG-----SDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hhcccCCCCccceeeecccCceeecc-----CccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            56788999999999999999999999     459999999999888877765 7999999999988  456899999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeee-------------
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQIL-------------  191 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------  191 (298)
                      .+++=.+...+.    ....+.+..|.++|..++.-|+. ..|++++.|+.+.-+|++.......+.             
T Consensus       210 qvr~s~i~~t~~----~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  210 QVRVSEILETGY----VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             ceeeeeeccccc----eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence            999887765432    23355667899999999999955 678899999999988887632211000             


Q ss_pred             ---------------------------------------ec------CCCCCceEEEEEeeccc----------------
Q 037555          192 ---------------------------------------AL------PPFNSSVTALSWVGLDR----------------  210 (298)
Q Consensus       192 ---------------------------------------~~------~~~~~~v~~~~~~~~~~----------------  210 (298)
                                                             .+      ......|++++|+.++.                
T Consensus       286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~  365 (559)
T KOG1334|consen  286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK  365 (559)
T ss_pred             eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence                                                   00      01123467777774442                


Q ss_pred             -------------------------------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555          211 -------------------------------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       211 -------------------------------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
                                                           .|..+|+++|++-|.|.||+-.++             +.+.. 
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-------------eii~~-  431 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-------------EIIRF-  431 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-------------HHHHH-
Confidence                                                 344577888888888888887765             33332 


Q ss_pred             ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                        +.+-...|++|.-+|.-       ..||++|-|.-|+||-
T Consensus       432 --MegDr~VVNCLEpHP~~-------PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  432 --MEGDRHVVNCLEPHPHL-------PVLASSGIDHDVKIWT  464 (559)
T ss_pred             --hhcccceEeccCCCCCC-------chhhccCCccceeeec
Confidence              33445589999999988       7999999999999995

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5.1e-15  Score=127.66  Aligned_cols=210  Identities=14%  Similarity=0.244  Sum_probs=149.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc---cccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH---SLTVTQIRFSH--DDNLLLSVSRDRQFSV  129 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~i  129 (298)
                      ...+...+.|+|-...++++     ++.-.|+|||.+.++.+..|..+   ...|+.+.+-.  |..++++|+.||.|+|
T Consensus      1063 n~~~pk~~~~hpf~p~i~~a-----d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAA-----DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred             CCCCCceeeecCCCceeEEc-----CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence            33456788899988899998     45678999999999888777643   45688888866  5568999999999999


Q ss_pred             EEeccCCCCccceeeeEEeec-------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceE
Q 037555          130 FAIQRTGTGEIDYQLIARQEA-------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVT  201 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~  201 (298)
                      |+--......  .+.+....+       ..+.=.-+.|.....+|++++.-..|+|||........   .++ +...-++
T Consensus      1138 wk~y~~~~~~--~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1138 WKDYADKWKK--PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVT 1212 (1387)
T ss_pred             ecccccccCC--ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe---ecccCCCccce
Confidence            9754332111  223322221       11111346788877777777778899999998776665   333 2344566


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce--EEEEEeecCCCCCCCcc
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA--VNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~  279 (298)
                      ++.-+...    ++.+++|..||.|++||.+.....             ..+...+.|...  |..+.+.+.|-      
T Consensus      1213 aLS~~~~~----gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v~~~R~h~~~~~Iv~~slq~~G~------ 1269 (1387)
T KOG1517|consen 1213 ALSADLVH----GNIIAAGFADGSVRVYDRRMAPPD-------------SLVCVYREHNDVEPIVHLSLQRQGL------ 1269 (1387)
T ss_pred             eecccccC----CceEEEeecCCceEEeecccCCcc-------------ccceeecccCCcccceeEEeecCCC------
Confidence            66544332    389999999999999999876322             112224457776  99999999873      


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      ..|++++.||.|++||++
T Consensus      1270 ~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             cceeeeccCCeEEEEecc
Confidence            469999999999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=8.4e-16  Score=123.42  Aligned_cols=157  Identities=16%  Similarity=0.236  Sum_probs=121.9

Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      .||.+.+.+- .++....+..|.+.+.+-.|+|||.-|++++.||.|++|.-.-        -+...+.....+|+|++|
T Consensus        83 ~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--------MLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   83 NDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--------MLRSTVVQNEESIRCARW  153 (737)
T ss_pred             CCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--------hHHHHHhhcCceeEEEEE
Confidence            3777777764 3666677888999999999999999999999999999998542        223333445678999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          161 NPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       161 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                      .|+.+.++.+.. +.+.+=-+.....+-   ....|.+-|.++.|++.+     +++++|++|-..+|||....      
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i---~WkAHDGiiL~~~W~~~s-----~lI~sgGED~kfKvWD~~G~------  218 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPLAANSKII---RWRAHDGLVLSLSWSTQS-----NIIASGGEDFRFKIWDAQGA------  218 (737)
T ss_pred             CCCCCceEEecC-CeEEEeeccccccee---EEeccCcEEEEeecCccc-----cceeecCCceeEEeecccCc------
Confidence            998877766654 445555554433333   567899999999999998     89999999999999997643      


Q ss_pred             CCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                              .   +.....|..+|++++|+|+.
T Consensus       219 --------~---Lf~S~~~ey~ITSva~npd~  239 (737)
T KOG1524|consen  219 --------N---LFTSAAEEYAITSVAFNPEK  239 (737)
T ss_pred             --------c---cccCChhccceeeeeecccc
Confidence                    1   22245699999999999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=2.3e-13  Score=102.75  Aligned_cols=162  Identities=15%  Similarity=0.184  Sum_probs=121.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCC--CCEEEE-EeCCCeEEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHD--DNLLLS-VSRDRQFSVF  130 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~~dg~i~iw  130 (298)
                      ...+|.++.+.++  .+++.-      .+.|+||... ..+.+..+..-..+=--++..|.  ..+|+- |-.-|.|.|-
T Consensus        93 f~~~I~~V~l~r~--riVvvl------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~  164 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVL------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV  164 (346)
T ss_pred             eccceeeEEEcCC--eEEEEe------cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence            5678888888765  455542      6889999987 44555554322211113444452  223333 4457999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      |+.....     .....+.+|...|.+++.+.+|..+|++|..|+ |||||..+++.+.+++.-. ....|.+++|+|+.
T Consensus       165 dL~~~~~-----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  165 DLASTKP-----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS  238 (346)
T ss_pred             EhhhcCc-----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence            9986432     134677899999999999999999999999998 7999999999998765543 45779999999999


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecc
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                           .+|+++++.|+|+|+.++...
T Consensus       239 -----s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  239 -----SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             -----cEEEEEcCCCeEEEEEeecCC
Confidence                 799999999999999998754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.6e-14  Score=119.40  Aligned_cols=194  Identities=11%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCe-
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQ-  126 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~-  126 (298)
                      .+.+..|...+.+.+|+|||+.|+..+...  .+..|++||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++. 
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            456778888999999999999999886532  3579999999887653 3444666778899999998765 5566665 


Q ss_pred             -EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          127 -FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       127 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                       |.+||+...        ....+..+........|+|+++.|+..+. +|  .|.++|+..+.. .   .+......+..
T Consensus       271 ~Iy~~d~~~~--------~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~---~lt~~~~~~~~  338 (435)
T PRK05137        271 DIYTMDLRSG--------TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R---RISFGGGRYST  338 (435)
T ss_pred             eEEEEECCCC--------ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E---EeecCCCcccC
Confidence             556676542        23344555556677899999998887764 33  588888776543 3   22223445667


Q ss_pred             EEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          203 LSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      ..|+|++     ..|+....+   ..|.+||+..+.              ...+.    ....+..+.|+||+       
T Consensus       339 ~~~SpdG-----~~ia~~~~~~~~~~i~~~d~~~~~--------------~~~lt----~~~~~~~p~~spDG-------  388 (435)
T PRK05137        339 PVWSPRG-----DLIAFTKQGGGQFSIGVMKPDGSG--------------ERILT----SGFLVEGPTWAPNG-------  388 (435)
T ss_pred             eEECCCC-----CEEEEEEcCCCceEEEEEECCCCc--------------eEecc----CCCCCCCCeECCCC-------
Confidence            8899998     566665433   357777764431              11221    12246678999999       


Q ss_pred             eEEEeeeC
Q 037555          280 MQLASCGA  287 (298)
Q Consensus       280 ~~l~s~~~  287 (298)
                      +.|+..+.
T Consensus       389 ~~i~~~~~  396 (435)
T PRK05137        389 RVIMFFRQ  396 (435)
T ss_pred             CEEEEEEc
Confidence            66655443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.6e-15  Score=117.48  Aligned_cols=175  Identities=16%  Similarity=0.124  Sum_probs=135.9

Q ss_pred             eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE-eeccCCceEEEEEccCCCEEEEeeCCCe
Q 037555           97 GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGSRDKT  175 (298)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (298)
                      +-+.+|.+.|.++.|+.++++|++|+.|..+++|.+...-.... .+++.. -..|...|.+++|.....++++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            34568999999999999999999999999999999875322111 122322 2346689999999999999999999999


Q ss_pred             EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc
Q 037555          176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP  255 (298)
Q Consensus       176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  255 (298)
                      |.+.|+++.+.+... ......+.|+.+..+|..     +.+++.+.++.|.+||.+....            ....+- 
T Consensus       129 VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~D-----N~~~~~t~~~~V~~~D~Rd~~~------------~~~~~~-  189 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTD-----NTLIVVTRAKLVSFIDNRDRQN------------PISLVL-  189 (609)
T ss_pred             eEeeecccceeeeee-cccCcccceeecccCCCC-----ceEEEEecCceEEEEeccCCCC------------CCceee-
Confidence            999999998776522 222234589999999997     8999999999999999987632            111111 


Q ss_pred             CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          256 FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       256 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .........++-|+|..+      .+|++.+..+-+-+||.+
T Consensus       190 ~AN~~~~F~t~~F~P~~P------~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETP------ALILVNSETGGPNVFDRR  225 (609)
T ss_pred             ecCCCccceeeeecCCCc------eeEEeccccCCCCceeec
Confidence            223456778899999875      899999999999999976

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.2e-14  Score=105.61  Aligned_cols=154  Identities=14%  Similarity=0.266  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCEEEeEec-c--C--CCCceEEEEEEcCC-ceeeecccc-ccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555           60 FSLCCDHQGKLVASSCK-A--Q--STAAAEIWLWEVGS-WKAMGRLQS-HSLTVTQIRFSHDDNLLLSV--SRDRQFSVF  130 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~-~--~--~~~d~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  130 (298)
                      ..+.|+|+|.+|+.-.. +  .  ...-+...+|.++. ......+.. ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987765533 0  0  01123445555522 233444432 34579999999999987654  457899999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      |++        ...+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+.   ... + ..++.++|+|
T Consensus        89 d~~--------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVK--------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCc--------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---ccc-c-CcEEEEEEcC
Confidence            996        33444443  567789999999999999874   3679999999777665   433 3 3478999999


Q ss_pred             ccccCCccEEEEeec------CCcEEEEEeee
Q 037555          208 LDRQKNHGFLAVGME------SGVIELWSISV  233 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~------dg~i~vwd~~~  233 (298)
                      +|     .+++++..      |..++||++..
T Consensus       154 dG-----r~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  154 DG-----RYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CC-----CEEEEEEeccceeccccEEEEEecC
Confidence            99     68887764      77889999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3e-14  Score=105.81  Aligned_cols=149  Identities=19%  Similarity=0.419  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEee--CC
Q 037555          107 TQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGS--RD  173 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~d  173 (298)
                      ..+.|+|+|++|+.-..          -+...+|.++....      ....+. ...++|.+++|+|+++.|++..  .+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~   82 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP   82 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC------ccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence            45789999987665432          23466666654321      122222 2345799999999999876654  56


Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCccee
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANII  250 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~  250 (298)
                      +.|.+||++ .+.+.   .+.  ...+..+.|+|.|     .+|++++.   .|.|.+||.++.             +.+
T Consensus        83 ~~v~lyd~~-~~~i~---~~~--~~~~n~i~wsP~G-----~~l~~~g~~n~~G~l~~wd~~~~-------------~~i  138 (194)
T PF08662_consen   83 AKVTLYDVK-GKKIF---SFG--TQPRNTISWSPDG-----RFLVLAGFGNLNGDLEFWDVRKK-------------KKI  138 (194)
T ss_pred             cccEEEcCc-ccEeE---eec--CCCceEEEECCCC-----CEEEEEEccCCCcEEEEEECCCC-------------EEe
Confidence            789999997 34333   443  4667899999999     78888764   467999999865             444


Q ss_pred             eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC------CCcEEEeEec
Q 037555          251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA------DNTVRVFQVN  297 (298)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iw~~~  297 (298)
                      ....    | ..++.++|+|+|       ++|+++..      |+.++||++.
T Consensus       139 ~~~~----~-~~~t~~~WsPdG-------r~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 STFE----H-SDATDVEWSPDG-------RYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccc----c-CcEEEEEEcCCC-------CEEEEEEeccceeccccEEEEEec
Confidence            4332    3 347899999999       88888874      7889999874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.7e-14  Score=120.88  Aligned_cols=203  Identities=15%  Similarity=0.215  Sum_probs=156.2

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEEEEEeCCCeEEEEEeccC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~  135 (298)
                      -..-.|++|+++++...      +..|.||...+++++..+..|..++..+.+.|..   .++++++.+|.|++||...+
T Consensus        19 ~~~avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   19 KSPAVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             ecccccccCCcEEEEee------CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            33456899999888875      6789999999999999999999999999998844   46789999999999998654


Q ss_pred             CCCcc---------------------------------------------------------------------------
Q 037555          136 GTGEI---------------------------------------------------------------------------  140 (298)
Q Consensus       136 ~~~~~---------------------------------------------------------------------------  140 (298)
                      .....                                                                           
T Consensus        93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g  172 (792)
T KOG1963|consen   93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG  172 (792)
T ss_pred             EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence            31000                                                                           


Q ss_pred             ceee------e---------E------EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCC
Q 037555          141 DYQL------I---------A------RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNS  198 (298)
Q Consensus       141 ~~~~------~---------~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~  198 (298)
                      ....      .         .      .-..|.-.+++.+++|.+++++++..||+|.+|.--. .........++-|..
T Consensus       173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence            0000      0         0      0012445578899999999999999999999996433 222223335677889


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .|.+++|+++|     .+|++|+.+|.+.+|.+.+++.               .+  +..-.++|..+.++||+      
T Consensus       253 ~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~T~~k---------------qf--LPRLgs~I~~i~vS~ds------  304 (792)
T KOG1963|consen  253 EVNSLSFSSDG-----AYLLSGGREGVLVLWQLETGKK---------------QF--LPRLGSPILHIVVSPDS------  304 (792)
T ss_pred             ccceeEEecCC-----ceEeecccceEEEEEeecCCCc---------------cc--ccccCCeeEEEEEcCCC------
Confidence            99999999999     8999999999999999988742               11  23357899999999999      


Q ss_pred             ceEEEeeeCCCcEEEeEe
Q 037555          279 TMQLASCGADNTVRVFQV  296 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~  296 (298)
                       .+.+.+..|+.|.+-..
T Consensus       305 -~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  305 -DLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             -CeEEEEecCceEEEEec
Confidence             78888888999988654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=6.3e-14  Score=117.36  Aligned_cols=203  Identities=10%  Similarity=0.031  Sum_probs=130.7

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCC--
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDR--  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--  125 (298)
                      .+.+..+...+.+.+|+|||+.|+..+..  ..+..|.+|++.+++.... ......+....|+|||+.|+.. +.+|  
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence            34555667789999999999999876542  2356899999988754332 2223334568999999987754 4455  


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-Ce--EEEEEccCCcceeeeeecCCCCCceEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-KT--VKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .|.+||+....        ...+..+...+....|+|+++.|+..+.+ +.  |.++|+.++.. .   .+.........
T Consensus       268 ~I~~~d~~tg~--------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~  335 (429)
T PRK03629        268 NLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-Q---RITWEGSQNQD  335 (429)
T ss_pred             EEEEEECCCCC--------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-E---EeecCCCCccC
Confidence            58888887532        23333444567889999999988877754 44  44556665543 2   22223344567


Q ss_pred             EEEeeccccCCccEEEEeec-C--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          203 LSWVGLDRQKNHGFLAVGME-S--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      ..|+|++     .+|+..+. +  ..|.+||+.++.              ...+..  .  ....+..|+||+       
T Consensus       336 ~~~SpDG-----~~Ia~~~~~~g~~~I~~~dl~~g~--------------~~~Lt~--~--~~~~~p~~SpDG-------  385 (429)
T PRK03629        336 ADVSSDG-----KFMVMVSSNGGQQHIAKQDLATGG--------------VQVLTD--T--FLDETPSIAPNG-------  385 (429)
T ss_pred             EEECCCC-----CEEEEEEccCCCceEEEEECCCCC--------------eEEeCC--C--CCCCCceECCCC-------
Confidence            8999998     56665543 3  357888886652              122211  1  122457899999       


Q ss_pred             eEEEeeeCCCc---EEEeEe
Q 037555          280 MQLASCGADNT---VRVFQV  296 (298)
Q Consensus       280 ~~l~s~~~d~~---i~iw~~  296 (298)
                      .+|+..+.++.   +.++++
T Consensus       386 ~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        386 TMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CEEEEEEcCCCceEEEEEEC
Confidence            78888887764   555554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.2e-14  Score=117.81  Aligned_cols=176  Identities=9%  Similarity=0.215  Sum_probs=126.2

Q ss_pred             EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC-----ceEEEEEcc
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR-----IIWSCSWNP  162 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~  162 (298)
                      ++++.|+.+..|....+.++++..++...+|++|+.+|.|-+||.+....... ......+..|.+     .|+++.|+.
T Consensus       160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~s~pg~~~~~svTal~F~d  238 (703)
T KOG2321|consen  160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT-LDAASSVNSHPGGDAAPSVTALKFRD  238 (703)
T ss_pred             EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee-eecccccCCCccccccCcceEEEecC
Confidence            33333444444444456788888998888999999999999999987443211 111122223333     399999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                      +|-.+++|+.+|.+.|||++..+++..  .-+...-+|..+.|.+.+.   +..+++ .+...++|||-.++        
T Consensus       239 ~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~~e~pi~~l~~~~~~~---q~~v~S-~Dk~~~kiWd~~~G--------  304 (703)
T KOG2321|consen  239 DGLHVAVGTSTGSVLIYDLRASKPLLV--KDHGYELPIKKLDWQDTDQ---QNKVVS-MDKRILKIWDECTG--------  304 (703)
T ss_pred             CceeEEeeccCCcEEEEEcccCCceee--cccCCccceeeecccccCC---CceEEe-cchHHhhhcccccC--------
Confidence            999999999999999999999887652  2234567899999988742   134444 45678999999888        


Q ss_pred             CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                           +.+..+.    ....++.+|+-|++       .+++++-.++.+..|
T Consensus       305 -----k~~asiE----pt~~lND~C~~p~s-------Gm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  305 -----KPMASIE----PTSDLNDFCFVPGS-------GMFFTANESSKMHTY  340 (703)
T ss_pred             -----Cceeecc----ccCCcCceeeecCC-------ceEEEecCCCcceeE
Confidence                 5555544    34559999999998       899999888776554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.7e-14  Score=108.88  Aligned_cols=201  Identities=15%  Similarity=0.236  Sum_probs=138.7

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCC-CEEEEEeCCCeEEEEEecc
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  134 (298)
                      -.+..++|++.-..+|++     ..|-.|++|+-.+ +....++ .....|++++|-|.+ +.|+.|+ -+-|++|....
T Consensus        99 ~dlr~~aWhqH~~~fava-----~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~  171 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVA-----TNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSR  171 (445)
T ss_pred             cceeeEeechhhhhhhhh-----ccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCc
Confidence            357788999866667777     4588999999876 4444443 345679999999955 4555555 45688998765


Q ss_pred             CCCCccc-------eeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          135 TGTGEID-------YQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       135 ~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      .......       ...+....+| .+|+++.|++|+..+++++. |..|++||..++..+.   -.....+.+.-+.|+
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p---L~~~glgg~slLkwS  247 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP---LIPKGLGGFSLLKWS  247 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc---ccccCCCceeeEEEc
Confidence            4322110       0112222334 68999999999999999885 6789999999987764   222345678899999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                      |++     .+|+++.-|+..++|+.....            ....    .....+.|...+|+|.|.      .+|++++
T Consensus       248 Pdg-----d~lfaAt~davfrlw~e~q~w------------t~er----w~lgsgrvqtacWspcGs------fLLf~~s  300 (445)
T KOG2139|consen  248 PDG-----DVLFAATCDAVFRLWQENQSW------------TKER----WILGSGRVQTACWSPCGS------FLLFACS  300 (445)
T ss_pred             CCC-----CEEEEecccceeeeehhcccc------------eecc----eeccCCceeeeeecCCCC------EEEEEEc
Confidence            999     799999999999999654331            1111    112345899999999994      5555555


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      ..  -++|.+.
T Consensus       301 gs--p~lysl~  309 (445)
T KOG2139|consen  301 GS--PRLYSLT  309 (445)
T ss_pred             CC--ceEEEEe
Confidence            43  4455543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=7.4e-14  Score=117.05  Aligned_cols=197  Identities=11%  Similarity=0.122  Sum_probs=128.2

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQF  127 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i  127 (298)
                      .+.+..+...+.+.+|+|+|+.|+..+.+  .....|.+||+.+++... +......+....|+|||+.|+ +.+.+|..
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~--~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFE--SKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEcc--CCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence            35566778889999999999999988642  224679999998876543 333345567899999998776 56778887


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc--CCcceeeeeecCCCCCceEEEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE--NKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .+|.++...      .....+..+........|+|+++.|+..+. +|...+|.+.  ++.. ..+ .+.  .......+
T Consensus       265 ~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-t~~--g~~~~~~~  334 (427)
T PRK02889        265 QIYTVNADG------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV-TFT--GSYNTSPR  334 (427)
T ss_pred             eEEEEECCC------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE-ecC--CCCcCceE
Confidence            888765422      113344444555667889999998887664 4566666553  3332 211 222  23344678


Q ss_pred             EeeccccCCccEEEEeecCC---cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          205 WVGLDRQKNHGFLAVGMESG---VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      |+|++     ++|+..+.++   .|.+||+.++..              ..+.    .........|+||+       ..
T Consensus       335 ~SpDG-----~~Ia~~s~~~g~~~I~v~d~~~g~~--------------~~lt----~~~~~~~p~~spdg-------~~  384 (427)
T PRK02889        335 ISPDG-----KLLAYISRVGGAFKLYVQDLATGQV--------------TALT----DTTRDESPSFAPNG-------RY  384 (427)
T ss_pred             ECCCC-----CEEEEEEccCCcEEEEEEECCCCCe--------------EEcc----CCCCccCceECCCC-------CE
Confidence            99998     6777665543   699999876521              1221    11223567899999       56


Q ss_pred             EEeeeCC
Q 037555          282 LASCGAD  288 (298)
Q Consensus       282 l~s~~~d  288 (298)
                      |+..+.+
T Consensus       385 l~~~~~~  391 (427)
T PRK02889        385 ILYATQQ  391 (427)
T ss_pred             EEEEEec
Confidence            6555543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=1.9e-14  Score=125.87  Aligned_cols=186  Identities=14%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             EEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (298)
                      |+.+ |..+..+..|...+..++.++.. .++++|+.||+|++|+.+.........+...++......+.++.+.+.++.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            6654 78888888899999999998755 899999999999999998654432223444455555778999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          167 FATGSRDKTVKIWAVENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                      +|+++.||.|++.++......+      .+...+.....+..-++.....   ...++.+..-+.|..||+++..     
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~---S~~lvy~T~~~~iv~~D~r~~~----- 1184 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ---SHVLVYATDLSRIVSWDTRMRH----- 1184 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc---ceeEEEEEeccceEEecchhhh-----
Confidence            9999999999999997622111      0111121122233334433332   1378888889999999998762     


Q ss_pred             CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555          241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                              ....+. .....+.|++++.+|.+       ++++.|...|.+-+||++|
T Consensus      1185 --------~~w~lk-~~~~hG~vTSi~idp~~-------~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1185 --------DAWRLK-NQLRHGLVTSIVIDPWC-------NWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             --------hHHhhh-cCccccceeEEEecCCc-------eEEEEecCCceEEEEEeec
Confidence                    222222 23345789999999999       8999999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.9e-13  Score=103.17  Aligned_cols=180  Identities=12%  Similarity=0.204  Sum_probs=130.5

Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC--CceEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK--RIIWSC  158 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~  158 (298)
                      ....|.|||=...+++..+. ...+|.++.+.++  .|++.- .+.|.+|.....      .+.+..+....  ..+.++
T Consensus        73 ~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n------~k~l~~~et~~NPkGlC~~  142 (346)
T KOG2111|consen   73 PPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN------PKLLHVIETRSNPKGLCSL  142 (346)
T ss_pred             CCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC------hhheeeeecccCCCceEee
Confidence            45789999966677777776 7789999999865  444444 678999998743      23333333222  223333


Q ss_pred             EEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc-EEEEEeeeccc
Q 037555          159 SWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV-IELWSISVNRT  236 (298)
Q Consensus       159 ~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~  236 (298)
                      +-..+...||.-+ .-|.|.+-|+...+.-.+. .+.+|.+.|.+++++-+|     ..+|+++..|+ |+|||..++  
T Consensus       143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~-~I~AH~s~Iacv~Ln~~G-----t~vATaStkGTLIRIFdt~~g--  214 (346)
T KOG2111|consen  143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPS-IINAHDSDIACVALNLQG-----TLVATASTKGTLIRIFDTEDG--  214 (346)
T ss_pred             cCCCCceEEEcCCCccceEEEEEhhhcCcCCce-EEEcccCceeEEEEcCCc-----cEEEEeccCcEEEEEEEcCCC--
Confidence            3222334454433 5689999999876552111 567899999999999999     89999999986 899999998  


Q ss_pred             ccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          237 NDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                 ..+..+.. ......|.+|+|||+.       .+|+.+|..|+|+|+.++
T Consensus       215 -----------~~l~E~RR-G~d~A~iy~iaFSp~~-------s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  215 -----------TLLQELRR-GVDRADIYCIAFSPNS-------SWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             -----------cEeeeeec-CCchheEEEEEeCCCc-------cEEEEEcCCCeEEEEEee
Confidence                       55555542 2345789999999999       899999999999999875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.6e-14  Score=119.90  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=140.6

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc---------CCCCc----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH---------TLWPE----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      ....+..+...+....++ |+++.++..         .+|+.    ...+....+....++|+|||+.|+.++.    .+
T Consensus       195 ~~~~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~----~~  269 (429)
T PRK01742        195 NQFIVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS----KD  269 (429)
T ss_pred             CceEeccCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe----cC
Confidence            355667777788888888 556665543         12321    1223223334457899999999888752    24


Q ss_pred             e--EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           83 A--EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        83 ~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      +  .|++||+.+++. ..+..+...+....|+|||+.|+.++ .+|...||+++.....      ...+ .+..  ....
T Consensus       270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------~~~l-~~~~--~~~~  339 (429)
T PRK01742        270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------ASLV-GGRG--YSAQ  339 (429)
T ss_pred             CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------eEEe-cCCC--CCcc
Confidence            4  455667765554 44555677788999999999776554 5788999988653211      1112 2333  4578


Q ss_pred             EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555          160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV  239 (298)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  239 (298)
                      |+|++++|+..+.++ +.+||+.+++...   .....  ...++.|+|++     .+|+.++.++.+.+|.+.....   
T Consensus       340 ~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~---lt~~~--~~~~~~~sPdG-----~~i~~~s~~g~~~~l~~~~~~G---  405 (429)
T PRK01742        340 ISADGKTLVMINGDN-VVKQDLTSGSTEV---LSSTF--LDESPSISPNG-----IMIIYSSTQGLGKVLQLVSADG---  405 (429)
T ss_pred             CCCCCCEEEEEcCCC-EEEEECCCCCeEE---ecCCC--CCCCceECCCC-----CEEEEEEcCCCceEEEEEECCC---
Confidence            999999998888765 5569998876432   11111  23567899998     7888888899888888753210   


Q ss_pred             cCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          240 STPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                              .....   +..|.+.+...+|+|-
T Consensus       406 --------~~~~~---l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        406 --------RFKAR---LPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------CceEE---ccCCCCCCCCcccCCC
Confidence                    33333   3357778888999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=7.8e-14  Score=107.98  Aligned_cols=203  Identities=12%  Similarity=0.192  Sum_probs=146.9

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcCCC-CEEEEEeCC-
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDD-NLLLSVSRD-  124 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d-  124 (298)
                      .......+|..++.. ++ .|++|     ..+|.+.+|..+.+.    .+..+..+ ..+..+.-++.. .++++|+.. 
T Consensus       100 ~~~l~~~~I~gl~~~-dg-~Litc-----~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~  171 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DG-TLITC-----VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKEN  171 (412)
T ss_pred             ccccccccccchhhc-CC-EEEEE-----ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhc
Confidence            334455556666553 33 45555     348999999987443    22233333 456667767644 456668888 


Q ss_pred             -CeEEEEEeccCCCCccceeeeEEeec---------cCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555          125 -RQFSVFAIQRTGTGEIDYQLIARQEA---------HKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       125 -g~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  192 (298)
                       ..+.+||+....       .+..-+.         .+-.++.+.|-+.  .+.|++++.-+.+++||.+.++.  ++..
T Consensus       172 ~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~~  242 (412)
T KOG3881|consen  172 INELKIWDLEQSK-------QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVAQ  242 (412)
T ss_pred             ccceeeeecccce-------eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--ceeE
Confidence             889999998731       1211111         1224567888887  78999999999999999986553  3335


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      +.-...+++++...|.+     +++++|..-+.+..||++.+             ......  +.+..+.|.+|..+|..
T Consensus       243 fd~~E~~is~~~l~p~g-----n~Iy~gn~~g~l~~FD~r~~-------------kl~g~~--~kg~tGsirsih~hp~~  302 (412)
T KOG3881|consen  243 FDFLENPISSTGLTPSG-----NFIYTGNTKGQLAKFDLRGG-------------KLLGCG--LKGITGSIRSIHCHPTH  302 (412)
T ss_pred             eccccCcceeeeecCCC-----cEEEEecccchhheecccCc-------------eeeccc--cCCccCCcceEEEcCCC
Confidence            55567899999999999     89999999999999999976             322221  55778999999999998


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEec
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             .+|++||-|..|||+|++
T Consensus       303 -------~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  303 -------PVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             -------ceEEeeccceeEEEeecc
Confidence                   899999999999999975

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=1.4e-13  Score=120.63  Aligned_cols=220  Identities=11%  Similarity=0.191  Sum_probs=153.4

Q ss_pred             ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCce-------eeeccccccccEEEEEEcCCCCEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSHDDNLLL  119 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~  119 (298)
                      .+..+..|...|..++.++.. .++++|+     .||+|++|+..+..       ...++..-...+.++.+.+.++.+|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGS-----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEec-----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            367778899999999988755 8999994     59999999986422       2222333467889999999999999


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEE-EEEcc-CCC-EEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWS-CSWNP-FGH-EFATGSRDKTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~-~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  195 (298)
                      .++.||.|++.+++.................+ .+.+.. -+|.. .+. .++.+..-+.|..||++.......+. ...
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk-~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK-NQL 1193 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh-cCc
Confidence            99999999999998632221112222222222 223333 34443 233 77888888999999999877666442 333


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      ..+.|++++.+|.+     .+++.|+..|.+.+||++-.             .++..+. + .+..+|..+..+|-.+  
T Consensus      1194 ~hG~vTSi~idp~~-----~WlviGts~G~l~lWDLRF~-------------~~i~sw~-~-P~~~~i~~v~~~~~~~-- 1251 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWC-----NWLVIGTSRGQLVLWDLRFR-------------VPILSWE-H-PARAPIRHVWLCPTYP-- 1251 (1431)
T ss_pred             cccceeEEEecCCc-----eEEEEecCCceEEEEEeecC-------------ceeeccc-C-cccCCcceEEeeccCC--
Confidence            55789999999998     89999999999999999976             4444443 2 3457888888877542  


Q ss_pred             CCcceEEEeee--CCCcEEEeEec
Q 037555          276 NSRTMQLASCG--ADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l~s~~--~d~~i~iw~~~  297 (298)
                        .+...++++  ..+.|.+|++.
T Consensus      1252 --~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1252 --QESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             --CCceEEEecccCCCceeeeecc
Confidence              113444443  56789999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.7e-13  Score=113.98  Aligned_cols=204  Identities=14%  Similarity=0.127  Sum_probs=131.9

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCC-
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDR-  125 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg-  125 (298)
                      ..+.+..+...+.+.+|+|+|+.|+..+..  .....|++|++.+++... +..+........|+|||+.++ +.+.+| 
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~--~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFE--RGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecC--CCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCC
Confidence            345667778889999999999999988643  125689999998776533 333444556789999998765 455555 


Q ss_pred             -eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCe--EEEEEccCCcceeeeeecCCCCCceE
Q 037555          126 -QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKT--VKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       126 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                       .|.+||+..+.        ...+..+.......+|+|+++.|+..+. +|.  |.++|+.+++... + ..  ......
T Consensus       272 ~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l-t~--~g~~~~  339 (433)
T PRK04922        272 PEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L-TF--QGNYNA  339 (433)
T ss_pred             ceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e-ec--CCCCcc
Confidence             58888887532        2334445455567899999998887764 444  6666776654322 1 22  233445


Q ss_pred             EEEEeeccccCCccEEEEeecC-C--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          202 ALSWVGLDRQKNHGFLAVGMES-G--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      ..+|+|++     ..|+..+.+ +  .|.+||+.++.             . ..+.    +........|+||+      
T Consensus       340 ~~~~SpDG-----~~Ia~~~~~~~~~~I~v~d~~~g~-------------~-~~Lt----~~~~~~~p~~spdG------  390 (433)
T PRK04922        340 RASVSPDG-----KKIAMVHGSGGQYRIAVMDLSTGS-------------V-RTLT----PGSLDESPSFAPNG------  390 (433)
T ss_pred             CEEECCCC-----CEEEEEECCCCceeEEEEECCCCC-------------e-EECC----CCCCCCCceECCCC------
Confidence            78999998     566665433 2  68899987652             1 1221    12233457899999      


Q ss_pred             ceEEEeeeCC-C--cEEEeEe
Q 037555          279 TMQLASCGAD-N--TVRVFQV  296 (298)
Q Consensus       279 ~~~l~s~~~d-~--~i~iw~~  296 (298)
                       ++|+..+.+ +  .|.++++
T Consensus       391 -~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        391 -SMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             -CEEEEEEecCCceEEEEEEC
Confidence             666655542 3  3555544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=9.1e-16  Score=121.04  Aligned_cols=191  Identities=12%  Similarity=0.200  Sum_probs=155.3

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ...|.++.|-.+.+++|++.      ...++|||-. |..+..+..| ..|..+.|.|.--+|++++..|.++.-|+.. 
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQ------K~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-  240 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQ------KKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVST-  240 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhh------hceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeech-
Confidence            35688888888888999984      5789999965 7777777744 5689999999988999999999999999998 


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                            +..+..+..-.+.+..++-+|-+..+-+|...|+|.+|.....+++.   .+..|.++|.++++.+.|     .
T Consensus       241 ------GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv---KiLcH~g~V~siAv~~~G-----~  306 (545)
T KOG1272|consen  241 ------GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV---KILCHRGPVSSIAVDRGG-----R  306 (545)
T ss_pred             ------hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH---HHHhcCCCcceEEECCCC-----c
Confidence                  66677777777888899999988899999999999999998888777   666799999999999999     8


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +++|.+.|..++|||+++..             .+..+.   . ..+...+++|..+         |++++....|.||.
T Consensus       307 YMaTtG~Dr~~kIWDlR~~~-------------ql~t~~---t-p~~a~~ls~Sqkg---------lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  307 YMATTGLDRKVKIWDLRNFY-------------QLHTYR---T-PHPASNLSLSQKG---------LLALSYGDHVQIWK  360 (545)
T ss_pred             EEeecccccceeEeeecccc-------------ccceee---c-CCCcccccccccc---------ceeeecCCeeeeeh
Confidence            99999999999999999863             222221   1 3456678888765         44455556788884

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.4e-14  Score=111.77  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=120.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555          107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS  186 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  186 (298)
                      ..++|+.+|..+++++.||++|+|+...       ...+.....|...|.++.|+||+.+|++.+.| ..+||+.+++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            6799999999999999999999999765       45566777899999999999999999999999 899999999976


Q ss_pred             eeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555          187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR  265 (298)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  265 (298)
                      +..... ...+.....+.|..++.. ..-++++. ...+.|+.|++......          ... ...........|++
T Consensus       220 ~a~~t~-~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~----------~~l-~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  220 LARKTP-FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGS----------NFL-RLRKKIKRFKSISS  286 (398)
T ss_pred             hhhcCC-cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccc----------ccc-chhhhhhccCccee
Confidence            663322 224455677778776522 11233333 23467888887654321          001 11112223468999


Q ss_pred             EEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          266 MAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ++.+++|       ++++.|+.||.|-|++.
T Consensus       287 l~VS~dG-------kf~AlGT~dGsVai~~~  310 (398)
T KOG0771|consen  287 LAVSDDG-------KFLALGTMDGSVAIYDA  310 (398)
T ss_pred             EEEcCCC-------cEEEEeccCCcEEEEEe
Confidence            9999999       89999999999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=1.4e-13  Score=102.94  Aligned_cols=201  Identities=16%  Similarity=0.138  Sum_probs=142.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      -.++.|++.+..++++     ..+|.+.+-+......  ++.++.|..++..+.|+. +.+++.+|+.|+.+..||++.+
T Consensus       124 ~lslD~~~~~~~i~vs-----~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVS-----DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEEE-----cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence            4578889988888888     5578888555544433  347889999999999987 5579999999999999999954


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .     .......+.|...|.++.-+| ...++++|+.|-.|++||.|+.. ++.   .- ...+.|+.+.++|...   
T Consensus       199 ~-----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~---~~-~v~GGVWRi~~~p~~~---  266 (339)
T KOG0280|consen  199 K-----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF---KA-KVGGGVWRIKHHPEIF---  266 (339)
T ss_pred             c-----ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc---cC-ccccceEEEEecchhh---
Confidence            3     122333566888999998887 57899999999999999999644 333   22 3458899999999763   


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CCCcEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-ADNTVR  292 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~  292 (298)
                       ..++.++.-.-.+|-+.......           ....+.....|.+-...-.|....       .+|+||+ .|..++
T Consensus       267 -~~lL~~CMh~G~ki~~~~~~~~e-----------~~~~~~s~~~hdSl~YG~DWd~~~-------~~lATCsFYDk~~~  327 (339)
T KOG0280|consen  267 -HRLLAACMHNGAKILDSSDKVLE-----------FQIVLPSDKIHDSLCYGGDWDSKD-------SFLATCSFYDKKIR  327 (339)
T ss_pred             -hHHHHHHHhcCceEEEecccccc-----------hheeeeccccccceeecccccccc-------ceeeeeecccccee
Confidence             33344444444777777654221           111222355677777777785443       5899987 577755


Q ss_pred             -EeE
Q 037555          293 -VFQ  295 (298)
Q Consensus       293 -iw~  295 (298)
                       +|-
T Consensus       328 ~~Wl  331 (339)
T KOG0280|consen  328 QLWL  331 (339)
T ss_pred             eeee
Confidence             673

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.58  E-value=3e-13  Score=103.23  Aligned_cols=206  Identities=20%  Similarity=0.304  Sum_probs=148.3

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------C---------CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------T---------LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      ..++.++||.+.|+....-| .++-+.+.      +         .||-+...  -..+++++.++++...|+.|-    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~~~L~vg~----   87 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSESRRLYVGQ----   87 (404)
T ss_pred             hhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccceEEEEEE----
Confidence            35677889999888776663 33333332      2         33333222  356799999999999999994    


Q ss_pred             CCceEEEEEEcC----CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-----------------
Q 037555           80 TAAAEIWLWEVG----SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG-----------------  138 (298)
Q Consensus        80 ~~d~~i~vw~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------  138 (298)
                       ..|++.-+.+.    +....+....|...+..+-|+-...++++.+.|..+.---.+.+...                 
T Consensus        88 -~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~  166 (404)
T KOG1409|consen   88 -DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL  166 (404)
T ss_pred             -ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence             47888877653    33445566779999999999887788888887755432222111100                 


Q ss_pred             -----------------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          139 -----------------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       139 -----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                                       .....++..+.+|.+.+.+++|.|....|++|..|..+.+||+-..+...  ..+.+|...|.
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~  244 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQ  244 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhh
Confidence                             00134566778899999999999999999999999999999997665443  24567888898


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      .+...+.-     ..++++++||.|-+|+++..+
T Consensus       245 ~l~~~~~t-----~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  245 ALSYAQHT-----RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhh-----eeeeeccCCCeEEEEecccee
Confidence            88888777     689999999999999997654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.58  E-value=1.4e-13  Score=105.07  Aligned_cols=222  Identities=19%  Similarity=0.276  Sum_probs=151.1

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----eeecccccc------------ccEEEEEEcCCCC-
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHS------------LTVTQIRFSHDDN-  116 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-  116 (298)
                      ..+-|.++.|...|.+||+|.     .+|.|.++.-....     ....++.|.            ..|..+.|.++++ 
T Consensus        24 eadiis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             hhcceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            345689999999999999994     48899988643221     233344443            4688999998654 


Q ss_pred             -EEEEEeCCCeEEEEEeccCCCCcc----------------------------ceeeeEE-eeccCCceEEEEEccCCCE
Q 037555          117 -LLLSVSRDRQFSVFAIQRTGTGEI----------------------------DYQLIAR-QEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus       117 -~l~~~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~-~~~~~~~v~~~~~~~~~~~  166 (298)
                       .++..+.|.+|++|.+........                            ...+.+. -..|...|.++.++.|...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence             678888999999999875432210                            0001111 1257778999999999998


Q ss_pred             EEEeeCCCeEEEEEccCCcceeeeeecCCCC-----CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQILALPPFN-----SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      ++++. |=+|.+|+++-......+..++++.     ..|++..|+|...    ++++-.+..|.|++-|++.........
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c----n~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC----NVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc----cEEEEecCCCcEEEeechhhhhhcchh
Confidence            88865 6789999998666555555555443     3589999999875    788888899999999999542211100


Q ss_pred             ---CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 ---PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         ..+.. ..-..+  +..--..|.++.|+++|       +++++-+. -+|++||++
T Consensus       254 KlfEeped-p~~rsf--fseiIsSISDvKFs~sG-------ryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  254 KLFEEPED-PSSRSF--FSEIISSISDVKFSHSG-------RYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             hhhccccC-Ccchhh--HHHHhhhhhceEEccCC-------cEEEEecc-ceeEEEecc
Confidence               00000 000000  11223568899999999       89988764 589999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.58  E-value=2.9e-14  Score=117.70  Aligned_cols=203  Identities=17%  Similarity=0.264  Sum_probs=119.1

Q ss_pred             eeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCceE--E-eccCCCceEEEEEcCCCCEEEeEeccC
Q 037555            8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPESH--K-LYGHGNELFSLCCDHQGKLVASSCKAQ   78 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~--~-~~~h~~~v~~~~~s~~~~~l~~~~~~~   78 (298)
                      .++...|..+.++++|.+-|++++++ .+++..+++      .+|.+..  . -..|.+.|.|+.|+|-...|++++-  
T Consensus        37 iyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL--  113 (1081)
T KOG1538|consen   37 VYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL--  113 (1081)
T ss_pred             EEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch--
Confidence            34555566666666666666666666 455555554      2443211  1 1246666666666666666666543  


Q ss_pred             CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                          ...-+|.... +.+...+ ....|.+++|..||++++.|-.+|+|.+-+-....     ...+....+.+.+|+++
T Consensus       114 ----sdFglWS~~q-K~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi  182 (1081)
T KOG1538|consen  114 ----SDFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-----KVKIERPGGSNSPIWSI  182 (1081)
T ss_pred             ----hhccccChhh-hhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-----ceEEeCCCCCCCCceEE
Confidence                2233455432 2222222 34567888888899999999889988877533211     11122222344455555


Q ss_pred             EEcc----------------------------------------------CCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555          159 SWNP----------------------------------------------FGHEFATGSRDKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       159 ~~~~----------------------------------------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  192 (298)
                      +|+|                                              +|.+++.|+.|+.+++|--+ +-.+.   +
T Consensus       183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLG---T  258 (1081)
T KOG1538|consen  183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLG---T  258 (1081)
T ss_pred             EecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEe---e
Confidence            5544                                              44455555555555555322 22222   3


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .-.....|++++..|++     ++++.|+.||+|.-|++-.
T Consensus       259 vg~~D~WIWtV~~~PNs-----Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  259 VGEQDSWIWTVQAKPNS-----QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccccceeEEEEEEccCC-----ceEEEEEccCeeehhhhHH
Confidence            33456789999999999     8999999999999998753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=4.8e-13  Score=103.71  Aligned_cols=158  Identities=16%  Similarity=0.230  Sum_probs=126.1

Q ss_pred             eEEEEEcCCCC-EEEeEeccCCCCc--eEEEEEEcCCceeeecccc---------ccccEEEEEEcCC--CCEEEEEeCC
Q 037555           59 LFSLCCDHQGK-LVASSCKAQSTAA--AEIWLWEVGSWKAMGRLQS---------HSLTVTQIRFSHD--DNLLLSVSRD  124 (298)
Q Consensus        59 v~~~~~s~~~~-~l~~~~~~~~~~d--~~i~vw~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d  124 (298)
                      +..+.-++..+ ++|+|++     .  ..+++||++..+.+.+-..         -.-.++++.|-+.  ...|++++.-
T Consensus       151 ~~~~r~~~~~p~Iva~GGk-----e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~  225 (412)
T KOG3881|consen  151 LYDVRQTDTDPYIVATGGK-----ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY  225 (412)
T ss_pred             eeeeccCCCCCceEecCch-----hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc
Confidence            44444455444 4555754     4  7899999987754432211         1234678899886  7899999999


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      +.+++||.+..      .+++..+.....++.++...|+++++++|..-|.+..+|++.++....  .+.+..+.|+++.
T Consensus       226 hqvR~YDt~~q------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~kg~tGsirsih  297 (412)
T KOG3881|consen  226 HQVRLYDTRHQ------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLKGITGSIRSIH  297 (412)
T ss_pred             eeEEEecCccc------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccCCccCCcceEE
Confidence            99999999864      456777777788999999999999999999999999999999887762  3677889999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+|..     .++++++-|..|+|+|+.+.
T Consensus       298 ~hp~~-----~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  298 CHPTH-----PVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             EcCCC-----ceEEeeccceeEEEeecccc
Confidence            99988     69999999999999999885

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=2.5e-12  Score=108.21  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=113.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCC--
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDR--  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--  125 (298)
                      .+.+..+...+...+|+|+|+.|+.+....  ....|++||+.+++... +..+...+.+++|+||++.|+. .+.++  
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  258 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNP  258 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            455666777899999999999999886431  24689999998875433 3335556677999999987664 44444  


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-C--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-K--TVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .|.+|++....        ...+..+........|+|+++.|+..+.. +  .|.++|+.+++..    .+......+..
T Consensus       259 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~~~  326 (417)
T TIGR02800       259 DIYVMDLDGKQ--------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYNAS  326 (417)
T ss_pred             cEEEEECCCCC--------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCccC
Confidence            57778876522        22333344445567899999988776643 3  5778888765532    22223455678


Q ss_pred             EEEeeccccCCccEEEEeecCC---cEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLAVGMESG---VIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~  234 (298)
                      ..|+|++     .+++.+..++   .|.+||+.++
T Consensus       327 ~~~spdg-----~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       327 PSWSPDG-----DLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             eEECCCC-----CEEEEEEccCCceEEEEEeCCCC
Confidence            8999998     6777776654   6888887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=6.3e-13  Score=114.70  Aligned_cols=195  Identities=15%  Similarity=0.195  Sum_probs=149.3

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc----cEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL----TVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .|....+.-+...++.+..     +..+.+||...+.....++.-..    ...-+-++++.-++++|+.-+.|.+|+..
T Consensus        89 wi~g~~l~~e~k~i~l~~~-----~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTS-----RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             cccccchhhhcceEEEEEc-----CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence            3444455556667777743     78899999987776666553221    12223345666789999999999999987


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ..      .. ...+.+|.+.|..+.++.+++++++.|.|.++|+|++.+.+...  ...-+|...+..++|.|      
T Consensus       164 ~d------n~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~------  228 (967)
T KOG0974|consen  164 ED------NK-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP------  228 (967)
T ss_pred             cc------CC-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc------
Confidence            32      11 22678999999999999999999999999999999999987665  23447999999999999      


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                       ..++++++|.+.++|+....              .   +..+..|. ..|..++..++.       ..++|++.|+.++
T Consensus       229 -n~i~t~gedctcrvW~~~~~--------------~---l~~y~~h~g~~iw~~~~~~~~-------~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  229 -NRIITVGEDCTCRVWGVNGT--------------Q---LEVYDEHSGKGIWKIAVPIGV-------IIKVTGGNDSTLK  283 (967)
T ss_pred             -ceeEEeccceEEEEEecccc--------------e---ehhhhhhhhcceeEEEEcCCc-------eEEEeeccCcchh
Confidence             46999999999999965432              1   12345564 469999999988       8999999999999


Q ss_pred             EeEec
Q 037555          293 VFQVN  297 (298)
Q Consensus       293 iw~~~  297 (298)
                      +|++.
T Consensus       284 ~~~l~  288 (967)
T KOG0974|consen  284 LWDLN  288 (967)
T ss_pred             hhhhh
Confidence            99863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=1.4e-12  Score=99.30  Aligned_cols=203  Identities=15%  Similarity=0.225  Sum_probs=133.4

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCc
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~  139 (298)
                      -+.|||+|+++|+.+      +..+.|-|.++.+..+.+.. -..|.-+.|..|..+++ ....++.|.+|++..     
T Consensus        13 ~c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-----   80 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-----   80 (447)
T ss_pred             ceeECCCCCeeeeee------eeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeec-----
Confidence            467999999999995      45888999998887776664 45677889998876554 557788999999987     


Q ss_pred             cceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                        .+-...+.....++..++|+|+|+.++ +..-+-+|.+|.+.+.+...    ++-.+..+..++|+|++     ++.+
T Consensus        81 --pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg-----~f~a  149 (447)
T KOG4497|consen   81 --PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDG-----QFCA  149 (447)
T ss_pred             --ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCC-----ceee
Confidence              344556666778899999999996555 55568899999998866542    33234556889999998     5666


Q ss_pred             EeecCCcEEEE--------------EeeecccccccCCCCCCcceeeeec------cCCcc-cceEEEEEeecCCCCCCC
Q 037555          219 VGMESGVIELW--------------SISVNRTNDVSTPAPSTANIIIRFD------PFACH-VAAVNRMAWKTHEKPKNS  277 (298)
Q Consensus       219 ~g~~dg~i~vw--------------d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~v~~~~~~~~~~~~~~  277 (298)
                      ..+.-.....+              ++.+.........+.+  ..+..+.      .+.-| ...+..+.|+|-+     
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~-----  222 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--NWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN-----  222 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--cEEEEecchhhheeeeeeeccceeEEEecccc-----
Confidence            55432110000              1111000000000000  0000000      01112 3578889999988     


Q ss_pred             cceEEEeeeCCCcEEEeE
Q 037555          278 RTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       278 ~~~~l~s~~~d~~i~iw~  295 (298)
                        ++|+.|+.|+.+|+-+
T Consensus       223 --qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  223 --QFLAVGSYDQMLRVLN  238 (447)
T ss_pred             --ceEEeeccchhhhhhc
Confidence              8999999999998743

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.4e-11  Score=103.88  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=109.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCC--
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDR--  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--  125 (298)
                      .+.+..+...+....|+|+|+.|+..+.+.  ....|.+|++.+++... +....+.+....|+|||+.|+ +.+.+|  
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~  267 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP  267 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence            455666778899999999999998876531  24579999998876533 332334456789999999776 455555  


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .|.++|+....        ...+..+........|+|+++.|+..+. +|  .|.++|+.+++... + ...  ......
T Consensus       268 ~Iy~~d~~~~~--------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~~--~~~~~~  335 (430)
T PRK00178        268 EIYVMDLASRQ--------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TFV--GNYNAR  335 (430)
T ss_pred             eEEEEECCCCC--------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ecC--CCCccc
Confidence            57777877532        2333444555667889999998877664 33  57777877665322 2 121  223345


Q ss_pred             EEEeeccccCCccEEEEeec-CC--cEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLAVGME-SG--VIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~-dg--~i~vwd~~~~  234 (298)
                      ..|+|++     ..|+.... ++  .|.++|+.++
T Consensus       336 ~~~Spdg-----~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        336 PRLSADG-----KTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             eEECCCC-----CEEEEEEccCCceEEEEEECCCC
Confidence            7899998     56665543 33  5777887764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1e-11  Score=104.21  Aligned_cols=217  Identities=12%  Similarity=0.064  Sum_probs=133.1

Q ss_pred             cccccCCCCCceeeeccCCCccccccc-------CCC--C----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH-------TLW--P----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~--~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      ...+..+...+....++ |+++.++..       .+|  +    ....+....+.+....|+|||+.|+.....  ....
T Consensus       191 ~~~lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~--~g~~  267 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK--TGSL  267 (429)
T ss_pred             CEEeecCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC--CCCc
Confidence            33444455567777777 556655532       111  1    123333344455678999999988865321  1234


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      .|++||+.+++... +..+...+....|+|||+.|+..+. ++...+|.++...     . ....+...........|+|
T Consensus       268 ~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-----g-~~~~lt~~~~~~~~~~~Sp  340 (429)
T PRK03629        268 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-----G-APQRITWEGSQNQDADVSS  340 (429)
T ss_pred             EEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-----C-CeEEeecCCCCccCEEECC
Confidence            69999998776544 3334556788999999998876665 4555666544321     1 1222333334456788999


Q ss_pred             CCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc---EEEEEeeeccc
Q 037555          163 FGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV---IELWSISVNRT  236 (298)
Q Consensus       163 ~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~---i~vwd~~~~~~  236 (298)
                      ++++|+..+.+   ..|.+||+.++...    .+.. ........|+|++     ..|+.++.++.   +.++++...  
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~----~Lt~-~~~~~~p~~SpDG-----~~i~~~s~~~~~~~l~~~~~~G~--  408 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLTD-TFLDETPSIAPNG-----TMVIYSSSQGMGSVLNLVSTDGR--  408 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeE----EeCC-CCCCCCceECCCC-----CEEEEEEcCCCceEEEEEECCCC--
Confidence            99998876643   35888999876543    2221 1223467899998     67777776654   556665432  


Q ss_pred             ccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          237 NDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                                  ....   +.+|.+.+...+|+|
T Consensus       409 ------------~~~~---l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 ------------FKAR---LPATDGQVKFPAWSP  427 (429)
T ss_pred             ------------CeEE---CccCCCCcCCcccCC
Confidence                        2222   334777788888887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.48  E-value=8.8e-12  Score=94.96  Aligned_cols=202  Identities=14%  Similarity=0.218  Sum_probs=132.3

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-------
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-------  124 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  124 (298)
                      +.....++.++.|||+|+.+...+    .-+-.|.||.+.+.+... ++-....+..++|+|||++.+.+++-       
T Consensus        87 Ideg~agls~~~WSPdgrhiL~ts----eF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTS----EFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeee----cceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence            345567899999999997776665    358899999998765543 23233456788899999887776642       


Q ss_pred             -----------------------------CeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCC
Q 037555          125 -----------------------------RQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDK  174 (298)
Q Consensus       125 -----------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg  174 (298)
                                                   ..+.+||---.      .   +.+..+ .-.+..++|+|.+++|++|+.|+
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le------y---kv~aYe~~lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE------Y---KVYAYERGLGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh------h---eeeeeeeccceeEEEeccccceEEeeccch
Confidence                                         23444543210      1   111122 24688999999999999999999


Q ss_pred             eEEEEEccCCccee---------------------------------------------------------eeee-----
Q 037555          175 TVKIWAVENKSSVK---------------------------------------------------------QILA-----  192 (298)
Q Consensus       175 ~i~~wd~~~~~~~~---------------------------------------------------------~~~~-----  192 (298)
                      .+|+.+--+-+...                                                         .+..     
T Consensus       233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t  312 (447)
T KOG4497|consen  233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT  312 (447)
T ss_pred             hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence            99886543211100                                                         0000     


Q ss_pred             -cCCCCCceEEEEEeeccccCCccEEEEeecC--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          193 -LPPFNSSVTALSWVGLDRQKNHGFLAVGMES--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       193 -~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                       ++.....+--++|+++.     .++++-.+.  ..+.+||++..             +....+    ....+|....|.
T Consensus       313 D~pnPk~g~g~lafs~Ds-----~y~aTrnd~~PnalW~Wdlq~l-------------~l~avL----iQk~piraf~Wd  370 (447)
T KOG4497|consen  313 DFPNPKCGAGKLAFSCDS-----TYAATRNDKYPNALWLWDLQNL-------------KLHAVL----IQKHPIRAFEWD  370 (447)
T ss_pred             CCCCcccccceeeecCCc-----eEEeeecCCCCceEEEEechhh-------------hhhhhh----hhccceeEEEeC
Confidence             01112235567888887     677776543  57999999865             222222    245789999999


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      |..       ..|+.+.....+++|..
T Consensus       371 P~~-------prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  371 PGR-------PRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             CCC-------ceEEEEcCCceEEEEcC
Confidence            998       67777777778999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.9e-11  Score=101.14  Aligned_cols=209  Identities=13%  Similarity=0.108  Sum_probs=121.5

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEE--eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVA--SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~--~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  125 (298)
                      .+.+......+..-.|+|||+.++  ..+..  .....|.+.++.+++... +....+.....+|+|||+.|+..+. +|
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~--~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g  253 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYK--LGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYG  253 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEcc--CCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCC
Confidence            344555566778889999997532  23321  224679999998775433 3334445567899999988876553 23


Q ss_pred             ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEE--EccC-CcceeeeeecCCCC
Q 037555          126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIW--AVEN-KSSVKQILALPPFN  197 (298)
Q Consensus       126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w--d~~~-~~~~~~~~~~~~~~  197 (298)
                          .+.+|++.....    .................+|+|+|+.|+..+ .+|...+|  ++.. +....   .+....
T Consensus       254 ~~di~~~~~~~~~g~~----g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~  326 (428)
T PRK01029        254 NPDLFIQSFSLETGAI----GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKY  326 (428)
T ss_pred             CcceeEEEeecccCCC----CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCC
Confidence                344466554211    111111222223346789999999888766 46655555  4432 12222   233334


Q ss_pred             CceEEEEEeeccccCCccEEEEeec-C--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGME-S--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      ..+....|+|++     +.|+.... +  ..|.+||+.++.             . ..+.   .....+....|+||+  
T Consensus       327 ~~~~~p~wSPDG-----~~Laf~~~~~g~~~I~v~dl~~g~-------------~-~~Lt---~~~~~~~~p~wSpDG--  382 (428)
T PRK01029        327 RNSSCPAWSPDG-----KKIAFCSVIKGVRQICVYDLATGR-------------D-YQLT---TSPENKESPSWAIDS--  382 (428)
T ss_pred             CCccceeECCCC-----CEEEEEEcCCCCcEEEEEECCCCC-------------e-EEcc---CCCCCccceEECCCC--
Confidence            566788999999     56665543 2  368899987652             1 1221   122345678999998  


Q ss_pred             CCCcceEEE-eeeCC--CcEEEeEe
Q 037555          275 KNSRTMQLA-SCGAD--NTVRVFQV  296 (298)
Q Consensus       275 ~~~~~~~l~-s~~~d--~~i~iw~~  296 (298)
                           +.|+ +...+  ..|.++|+
T Consensus       383 -----~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        383 -----LHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             -----CEEEEEECCCCCceEEEEEC
Confidence                 5555 44333  45666665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=2.1e-11  Score=99.52  Aligned_cols=193  Identities=15%  Similarity=0.150  Sum_probs=143.9

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEc------C--------------CCCEEEEEe
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFS------H--------------DDNLLLSVS  122 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~  122 (298)
                      |...++|..     ..||.+++|+...++....|..   -++..++..|.      |              +-..++-|.
T Consensus         3 ~~~~~~A~~-----~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALS-----TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeec-----CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            455677877     5699999999998877665542   23344444442      1              233677788


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      ..|.|.+|++..+       +....+  ..|.+.|.++.++.+-..|.+++.|+.+..|+......++   ...+.+..+
T Consensus        78 ~~g~v~~ys~~~g-------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~  147 (541)
T KOG4547|consen   78 PQGSVLLYSVAGG-------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLV  147 (541)
T ss_pred             CCccEEEEEecCC-------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCcc
Confidence            8999999998863       333333  4689999999999999999999999999999999887776   666677889


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      .+++.+|++     ..+++++  +.|++||+++.             +.+..   +.+|.++|+++.|.-+- +...+..
T Consensus       148 ~sl~is~D~-----~~l~~as--~~ik~~~~~~k-------------evv~~---ftgh~s~v~t~~f~~~~-~g~~G~~  203 (541)
T KOG4547|consen  148 SSLCISPDG-----KILLTAS--RQIKVLDIETK-------------EVVIT---FTGHGSPVRTLSFTTLI-DGIIGKY  203 (541)
T ss_pred             ceEEEcCCC-----CEEEecc--ceEEEEEccCc-------------eEEEE---ecCCCcceEEEEEEEec-cccccce
Confidence            999999998     7888876  68999999887             44444   67899999999998771 0000115


Q ss_pred             EEEeeeCCCcEEEeEec
Q 037555          281 QLASCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~~d~~i~iw~~~  297 (298)
                      +|.+...+..+.+|-+.
T Consensus       204 vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  204 VLSSAAAERGITVWVVE  220 (541)
T ss_pred             eeeccccccceeEEEEE
Confidence            66666677778888653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=4.9e-13  Score=121.27  Aligned_cols=191  Identities=13%  Similarity=0.216  Sum_probs=151.6

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      ++.+-..|.++.-+|...+.++|     +.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltg-----s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTG-----SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             eecccCceeeecCCCCCceEEec-----CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeec
Confidence            34455678888889999999999     459999999998887776664 344889999999999999999999999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ...        .++....+.|+.....+.|-.  ..+++++   .++.+.+||.--......+.  ..|.+.++++++.|
T Consensus      2279 q~~--------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2279 QAS--------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             ccC--------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence            987        345667788998888888874  5666664   46789999976544333222  67999999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ..     ++|++|+.+|.|++||++..             +..+.+        ..    +. ..       .++++++.
T Consensus      2347 ~~-----qllisggr~G~v~l~D~rqr-------------ql~h~~--------~~----~~-~~-------~~f~~~ss 2388 (2439)
T KOG1064|consen 2347 KH-----QLLISGGRKGEVCLFDIRQR-------------QLRHTF--------QA----LD-TR-------EYFVTGSS 2388 (2439)
T ss_pred             cc-----eEEEecCCcCcEEEeehHHH-------------HHHHHh--------hh----hh-hh-------heeeccCc
Confidence            98     89999999999999999865             332222        21    33 33       69999999


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      .|.++||+++
T Consensus      2389 ~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2389 EGNIKIWRLS 2398 (2439)
T ss_pred             ccceEEEEcc
Confidence            9999999975

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=3.9e-11  Score=100.74  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=111.8

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      ...|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+..+.       . ..+....+.+...
T Consensus       175 ~~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~  245 (427)
T PRK02889        175 RYQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAP  245 (427)
T ss_pred             ccEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccce
Confidence            4578888875 44444555677889999999999988877643   459999997632       1 2223334456688


Q ss_pred             EEccCCCEEEE-eeCCCeEEEEEc--cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeec
Q 037555          159 SWNPFGHEFAT-GSRDKTVKIWAV--ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVN  234 (298)
Q Consensus       159 ~~~~~~~~l~~-~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~  234 (298)
                      .|+|+++.|+. .+.+|...+|.+  ..+. ..   .+..+........|+|++     ..|+..+ .++...+|.+...
T Consensus       246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG-----~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDG-----RSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCC-----CEEEEEecCCCCcEEEEEECC
Confidence            99999988864 567777666654  4333 23   343344556678999998     5555444 4567777776532


Q ss_pred             ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC---cEEEeEec
Q 037555          235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN---TVRVFQVN  297 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iw~~~  297 (298)
                      .            .....+. +  .........|+|++       ++|+..+.++   .|.+||+.
T Consensus       317 ~------------g~~~~lt-~--~g~~~~~~~~SpDG-------~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        317 G------------GAAQRVT-F--TGSYNTSPRISPDG-------KLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             C------------CceEEEe-c--CCCCcCceEECCCC-------CEEEEEEccCCcEEEEEEECC
Confidence            1            1111111 1  11223457899999       7877666544   58888864

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.42  E-value=3.5e-11  Score=90.27  Aligned_cols=186  Identities=12%  Similarity=0.112  Sum_probs=131.1

Q ss_pred             CCceEEEEEcC---CCC-EEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCEEEEEeCCC
Q 037555           56 GNELFSLCCDH---QGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        56 ~~~v~~~~~s~---~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      +..+..+.|+.   +|. .++-+     ...|.|.++..........+.+      ......++.|++.+..++++-.+|
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a-----~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G  143 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDA-----HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRG  143 (339)
T ss_pred             ccccceeeeeeccCCccceeeec-----cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCC
Confidence            45567777753   444 33333     4588999998765443333322      112356788999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .+.+-+.....     .+.++..+.|+-+.+...|+. +.+.+++|++|+.+..||+|..+. ........|...|.++.
T Consensus       144 ~~~~v~~t~~~-----le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  144 SISGVYETEMV-----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             cEEEEecceee-----eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEe
Confidence            99965554321     334458889999999999986 447899999999999999994432 22234556888999998


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      -+|..+    .+|++|+.|-.|++||.++-..            ++..    ....+.|+.+.++|..
T Consensus       218 ss~~~~----~~I~TGsYDe~i~~~DtRnm~k------------Pl~~----~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  218 SSPPKP----TYIATGSYDECIRVLDTRNMGK------------PLFK----AKVGGGVWRIKHHPEI  265 (339)
T ss_pred             cCCCCC----ceEEEeccccceeeeehhcccC------------cccc----CccccceEEEEecchh
Confidence            888654    7999999999999999996432            2211    1234788888888864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8.8e-11  Score=99.03  Aligned_cols=173  Identities=11%  Similarity=0.076  Sum_probs=116.0

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      ...|.++|.+ +.....+..|...+...+|+|||+.|+..+.   +..|.+||+..+.        ...+..+.+.+...
T Consensus       181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~  251 (435)
T PRK05137        181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAP  251 (435)
T ss_pred             ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCc
Confidence            3589999986 4444556678889999999999998887653   4689999997632        22334455667789


Q ss_pred             EEccCCCEEE-EeeCCCe--EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEee
Q 037555          159 SWNPFGHEFA-TGSRDKT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSIS  232 (298)
Q Consensus       159 ~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~  232 (298)
                      .|+|+++.|+ +.+.++.  |.+||+.++...    .+..+........|+|++     ..|+..+ .+|  .|+++|+.
T Consensus       252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG-----~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDG-----SQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCC-----CEEEEEECCCCCCeEEEEECC
Confidence            9999998775 4455554  777788876543    344455566789999998     5666555 334  57777765


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC---CcEEEeEe
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD---NTVRVFQV  296 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iw~~  296 (298)
                      .+              ....+.   .+...+....|+|++       ..|+..+.+   ..|.+||+
T Consensus       323 g~--------------~~~~lt---~~~~~~~~~~~SpdG-------~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        323 GS--------------NPRRIS---FGGGRYSTPVWSPRG-------DLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CC--------------CeEEee---cCCCcccCeEECCCC-------CEEEEEEcCCCceEEEEEEC
Confidence            43              112222   123445678899999       677665543   24666664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=5.3e-11  Score=100.27  Aligned_cols=174  Identities=15%  Similarity=0.091  Sum_probs=112.1

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      ...|.+||.. +.....+..+...+.+.+|+|||+.|+..+.   +..|.+||+..+.        ...+....+....+
T Consensus       183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~  253 (433)
T PRK04922        183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAP  253 (433)
T ss_pred             eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCc
Confidence            4579999986 4444456667778999999999998888764   3469999987532        12222334445678


Q ss_pred             EEccCCCEEE-EeeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEee
Q 037555          159 SWNPFGHEFA-TGSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSIS  232 (298)
Q Consensus       159 ~~~~~~~~l~-~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~  232 (298)
                      .|+|+++.|+ +.+.+|  .|++||+.+++..    .+..+.......+|+|++     ..|+..+ .+|.  |+++++.
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG-----~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDG-----KSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCC-----CEEEEEECCCCCceEEEEECC
Confidence            9999998775 445555  5999999876543    333344455678999998     5666555 4555  5555554


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC-C--cEEEeEec
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD-N--TVRVFQVN  297 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~iw~~~  297 (298)
                      ++             . ...+. .  +......++|+|++       .+|+..+.+ +  .|.+||+.
T Consensus       325 ~g-------------~-~~~lt-~--~g~~~~~~~~SpDG-------~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        325 GG-------------S-AERLT-F--QGNYNARASVSPDG-------KKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             CC-------------C-eEEee-c--CCCCccCEEECCCC-------CEEEEEECCCCceeEEEEECC
Confidence            43             1 11221 1  22234468999999       677665433 2  58888863

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=8.9e-12  Score=94.34  Aligned_cols=223  Identities=17%  Similarity=0.232  Sum_probs=148.7

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----eeecccccc------------ccEEEEEEcCCC--
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHS------------LTVTQIRFSHDD--  115 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--  115 (298)
                      ..+.|+++.|...|.+|++|     +..|.|.++.-+...     ....|++|.            ..|..+.|..++  
T Consensus        25 ead~ItaVefd~tg~YlatG-----DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETGLYLATG-----DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEeccccceEeec-----CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            34679999999999999999     446999999765322     223356554            457888887644  


Q ss_pred             CEEEEEeCCCeEEEEEeccCCCC-----------------cc-------------ce-----eeeE-EeeccCCceEEEE
Q 037555          116 NLLLSVSRDRQFSVFAIQRTGTG-----------------EI-------------DY-----QLIA-RQEAHKRIIWSCS  159 (298)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~~~-----------------~~-------------~~-----~~~~-~~~~~~~~v~~~~  159 (298)
                      +.++..+.|.+|++|.+......                 +.             ..     .+.+ ....|...|.++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence            46788888999999998654100                 00             00     0111 1135777789999


Q ss_pred             EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-----CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-----SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |+.+...++++. |-+|.+|++.-......+..+++|.     ..|++..|+|...    ..+.-.+..|.|++-|++..
T Consensus       180 ~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c----n~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         180 FNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC----NVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             ecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc----ceEEEecCCCcEEehhhhhh
Confidence            998888887765 6789999998766656555666554     3489999999875    67777788999999999854


Q ss_pred             ccccccC--CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          235 RTNDVST--PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       235 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .......  ........-..  -+.+-...|..+.|++++       +++++-+. -+|+|||++
T Consensus       255 alcdn~~klfe~~~D~v~~~--ff~eivsSISD~kFs~ng-------ryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVD--FFEEIVSSISDFKFSDNG-------RYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             hhccCchhhhhhccCcccch--hHHHHhhhhcceEEcCCC-------cEEEEecc-ceEEEEecc
Confidence            2211000  00000000000  022234678899999999       78887765 589999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.8e-10  Score=96.02  Aligned_cols=165  Identities=18%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCCe--
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDRQ--  126 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--  126 (298)
                      +.+..+...+.+..|+|||+.|+..+.+  .....|++||+.+++... +..........+|+|||+.|+. .+.+|.  
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~--~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFE--NRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEec--CCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            3444556678899999999999887642  124579999998776432 2222233457899999997764 566675  


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      |.++|+....        ...+..+........|+|+++.|+..+. ++  .|.++|+.+++... + +..  .......
T Consensus       288 Iy~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L-t~~--g~~~~~~  355 (448)
T PRK04792        288 IYVVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L-TFE--GEQNLGG  355 (448)
T ss_pred             EEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E-ecC--CCCCcCe
Confidence            6666665421        2333444455677899999998877654 33  46667777665432 2 222  2223457


Q ss_pred             EEeeccccCCccEEEEee-cCCc--EEEEEeeec
Q 037555          204 SWVGLDRQKNHGFLAVGM-ESGV--IELWSISVN  234 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~~~  234 (298)
                      +|+|++     .+|+..+ .++.  |.++|+.++
T Consensus       356 ~~SpDG-----~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        356 SITPDG-----RSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             eECCCC-----CEEEEEEecCCceEEEEEECCCC
Confidence            899998     5555544 3454  444555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.40  E-value=3e-10  Score=92.81  Aligned_cols=182  Identities=15%  Similarity=0.120  Sum_probs=119.7

Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      .++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+       .+.+..+.. ......+++
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-------~~~v~~i~~-G~~~~~i~~   85 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-------GKVVATIKV-GGNPRGIAV   85 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-------SSEEEEEE--SSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-------ccEEEEEec-CCCcceEEE
Confidence            489999999999999998875544445678999999999999999999999998       556666664 345688999


Q ss_pred             ccCCCEEEEee-CCCeEEEEEccCCcceeeeeecC----CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          161 NPFGHEFATGS-RDKTVKIWAVENKSSVKQILALP----PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       161 ~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +++|++++++. .++.+.++|.++.+.+..+....    .....+..+..+|..+    .++++--+.+.|.+.|+....
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~----~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP----EFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS----EEEEEETTTTEEEEEETTTSS
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC----EEEEEEccCCeEEEEEecccc
Confidence            99999998775 58999999999988887543221    1234577787788773    466666666888888876542


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe-eeCCCcEEEeEe
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS-CGADNTVRVFQV  296 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iw~~  296 (298)
                      .           .....+.    .........|+|++       ++++. .-.++.|-++|.
T Consensus       162 ~-----------~~~~~i~----~g~~~~D~~~dpdg-------ry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  162 N-----------LKVTTIK----VGRFPHDGGFDPDG-------RYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             C-----------EEEEEEE------TTEEEEEE-TTS-------SEEEEEEGGGTEEEEEET
T ss_pred             c-----------cceeeec----ccccccccccCccc-------ceeeecccccceeEEEee
Confidence            1           1112221    23455678999998       55544 445667777765

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=1.8e-11  Score=93.72  Aligned_cols=214  Identities=16%  Similarity=0.239  Sum_probs=154.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc-CCceeeecc-ccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV-GSWKAMGRL-QSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      ..+.+.||.+.|++...-|...-+++.     ++|.+++||-- +.++.-..+ .....+++++.+.++...|+.+-..|
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~-----s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISV-----SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEc-----cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence            467788999999999998888889998     46999999954 344443332 23567899999999999999999999


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEE----------------------------
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVK----------------------------  177 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~----------------------------  177 (298)
                      ++.-+.+...-..   ....+....|...+..+-|+.....+++.+.|..+.                            
T Consensus        91 tvtefs~sedfnk---m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~  167 (404)
T KOG1409|consen   91 TVTEFALSEDFNK---MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY  167 (404)
T ss_pred             eEEEEEhhhhhhh---cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence            9988876532111   233444556667777776665555555555543322                            


Q ss_pred             -----------EEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555          178 -----------IWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST  246 (298)
Q Consensus       178 -----------~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  246 (298)
                                 +..+... ....+.++.+|...+++++|.|..     .+|++|..|..+.+||+--.+           
T Consensus       168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~-----~~LfSg~~d~~vi~wdigg~~-----------  230 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQ-----RLLFSGASDHSVIMWDIGGRK-----------  230 (404)
T ss_pred             EEecccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCC-----cEEEeccccCceEEEeccCCc-----------
Confidence                       2211111 122344667889999999999988     799999999999999996542           


Q ss_pred             cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       ....   ++.+|...|..+...+.-       ..|.+++.||.|.+|+++
T Consensus       231 -g~~~---el~gh~~kV~~l~~~~~t-------~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  231 -GTAY---ELQGHNDKVQALSYAQHT-------RQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             -ceee---eeccchhhhhhhhhhhhh-------eeeeeccCCCeEEEEecc
Confidence             1111   255788999988888777       899999999999999986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=3.6e-09  Score=86.43  Aligned_cols=212  Identities=14%  Similarity=0.164  Sum_probs=133.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeec---cc----------cccccEEEEEEcCCCCEEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGR---LQ----------SHSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~  120 (298)
                      .......++++|++++|+++..    .++.|.++++.. +.....   +.          .-.....++.|+|+++++++
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany----~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANY----GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET----TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             CCCCcEEEEEecCCCEEEEEEc----cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            3455678999999999999974    488999999976 332221   11          12345789999999998887


Q ss_pred             EeC-CCeEEEEEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEee-CCCeEEEEEcc--CCc--ceeeeeec
Q 037555          121 VSR-DRQFSVFAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVE--NKS--SVKQILAL  193 (298)
Q Consensus       121 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~--~~~--~~~~~~~~  193 (298)
                      ... ...|.+|++......   ......+ ......-+.+.|+|+++++++.. .++.|.++++.  .+.  ....+..+
T Consensus       161 ~dlG~D~v~~~~~~~~~~~---l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGK---LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-T---EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EecCCCEEEEEEEeCCCce---EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            643 457999999764321   1111222 23345678999999998887665 57889999998  221  22222222


Q ss_pred             CC---CCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          194 PP---FNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       194 ~~---~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                      ..   .......++++|++     ++|.++. ....|.+|++....            ..+..+............+.++
T Consensus       238 ~~~~~~~~~~~~i~ispdg-----~~lyvsnr~~~sI~vf~~d~~~------------g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDG-----RFLYVSNRGSNSISVFDLDPAT------------GTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTS-----SEEEEEECTTTEEEEEEECTTT------------TTEEEEEEEEESSSSEEEEEE-
T ss_pred             cccccccCCceeEEEecCC-----CEEEEEeccCCEEEEEEEecCC------------CceEEEEEEeCCCCCccEEEEe
Confidence            11   11257889999999     5666555 56789999995321            1122222122234457899999


Q ss_pred             cCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                      |++       ++|+++. .++.|.+|+++
T Consensus       301 ~~g-------~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  301 PDG-------RYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTS-------SEEEEEETTTTEEEEEEEE
T ss_pred             CCC-------CEEEEEecCCCeEEEEEEe
Confidence            999       6666555 67789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=7.5e-12  Score=108.25  Aligned_cols=149  Identities=20%  Similarity=0.309  Sum_probs=120.0

Q ss_pred             EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555           64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ  143 (298)
Q Consensus        64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (298)
                      ++++.-++++|     ..-+.|.+|+....+....+.+|.+.|..+.|+.||.++++.|.|.++++|++++.+.      
T Consensus       141 ~s~~~~~i~~g-----sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------  209 (967)
T KOG0974|consen  141 DSAEELYIASG-----SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------  209 (967)
T ss_pred             ccCcEEEEEec-----cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc------
Confidence            35555577777     4588999999874333335889999999999999999999999999999999998532      


Q ss_pred             eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-CceEEEEEeeccccCCccEEEEeec
Q 037555          144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-SSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      ......+|...|+.++|.|.  ++++++.|.+.++|+.... .+.   .+..|. ..+..++..+..     ..+++++.
T Consensus       210 ~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~l~---~y~~h~g~~iw~~~~~~~~-----~~~vT~g~  278 (967)
T KOG0974|consen  210 LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-QLE---VYDEHSGKGIWKIAVPIGV-----IIKVTGGN  278 (967)
T ss_pred             cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-eeh---hhhhhhhcceeEEEEcCCc-----eEEEeecc
Confidence            12356789999999999987  9999999999999976543 333   444454 568999998887     68999999


Q ss_pred             CCcEEEEEeeec
Q 037555          223 SGVIELWSISVN  234 (298)
Q Consensus       223 dg~i~vwd~~~~  234 (298)
                      |+.+++|++...
T Consensus       279 Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  279 DSTLKLWDLNGR  290 (967)
T ss_pred             Ccchhhhhhhcc
Confidence            999999998754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=2.3e-09  Score=87.64  Aligned_cols=147  Identities=9%  Similarity=0.072  Sum_probs=92.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~  126 (298)
                      .+.++......-..+.|+|||+++++++.     |+.|.++|+.+++.+.+++... ...++++++||++++++. ..+.
T Consensus        28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-----dg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~  101 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPDGRYLYVANR-----DGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT  101 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-SSEEEEEET-----TSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred             EEEEEcCCCCceeEEEecCCCCEEEEEcC-----CCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence            45556544444455789999999999854     8999999999999998887544 468899999999888775 5899


Q ss_pred             EEEEEeccCCCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCC
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                      +.++|.++       .++++.+...       ...+..+..+|....++..-. .+.|.+.|....+.+.. ..+. ...
T Consensus       102 v~v~D~~t-------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~-~g~  172 (369)
T PF02239_consen  102 VSVIDAET-------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIK-VGR  172 (369)
T ss_dssp             EEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE---T
T ss_pred             eeEecccc-------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeec-ccc
Confidence            99999887       5555554432       235677777887775555544 47788878766543321 1221 334


Q ss_pred             ceEEEEEeecc
Q 037555          199 SVTALSWVGLD  209 (298)
Q Consensus       199 ~v~~~~~~~~~  209 (298)
                      ......|+|++
T Consensus       173 ~~~D~~~dpdg  183 (369)
T PF02239_consen  173 FPHDGGFDPDG  183 (369)
T ss_dssp             TEEEEEE-TTS
T ss_pred             cccccccCccc
Confidence            45566777766

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.9e-08  Score=82.22  Aligned_cols=218  Identities=12%  Similarity=0.165  Sum_probs=135.6

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--e--eeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--K--AMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV  129 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  129 (298)
                      -.....-++++|++++|.++.... ..++.|..|.+...  +  .+............++++|++++|+++.. +|.+.+
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v  113 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV  113 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence            344567788999999999997521 14789999988653  2  33333323445567999999999988874 899999


Q ss_pred             EEeccCCCCccceeeeEEee----------ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcc-eeeeeec-CCC
Q 037555          130 FAIQRTGTGEIDYQLIARQE----------AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSS-VKQILAL-PPF  196 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~-~~~~~~~-~~~  196 (298)
                      +++......   ........          .......++.++|+++++++... ...|.+|++..... +.....+ ...
T Consensus       114 ~~l~~~g~l---~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  114 FPLDDDGSL---GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEECTTSEE---EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEccCCccc---ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            999874221   11111111          11245788999999998888753 45799999976552 2211111 134


Q ss_pred             CCceEEEEEeeccccCCccEEEE-eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAV-GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHE  272 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~  272 (298)
                      ....+.++|+|++     .++.+ .-.++.|.++++....-.         ...+..+..+.   ........|+++||+
T Consensus       191 G~GPRh~~f~pdg-----~~~Yv~~e~s~~v~v~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~i~ispdg  256 (345)
T PF10282_consen  191 GSGPRHLAFSPDG-----KYAYVVNELSNTVSVFDYDPSDGS---------LTEIQTISTLPEGFTGENAPAEIAISPDG  256 (345)
T ss_dssp             TSSEEEEEE-TTS-----SEEEEEETTTTEEEEEEEETTTTE---------EEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred             CCCCcEEEEcCCc-----CEEEEecCCCCcEEEEeecccCCc---------eeEEEEeeeccccccccCCceeEEEecCC
Confidence            5678999999998     45544 445788999999822110         02222222221   112267889999999


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEe
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +      .++++...++.|.+|++
T Consensus       257 ~------~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  257 R------FLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             S------EEEEEECTTTEEEEEEE
T ss_pred             C------EEEEEeccCCEEEEEEE
Confidence            3      44555557788999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=7e-12  Score=114.03  Aligned_cols=146  Identities=16%  Similarity=0.305  Sum_probs=120.5

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe---CCCeEEEEEec
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS---RDRQFSVFAIQ  133 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~  133 (298)
                      ..|+.+.|+.+|..+.++     ..||.+.+|.+. .++....++|....++++|-.  ..+++++   .++.+.+||..
T Consensus      2252 s~vtr~~f~~qGnk~~i~-----d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIV-----DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred             chhhhhhhcccCCceeee-----ccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcc
Confidence            789999999999999888     669999999987 677777889999999999975  5666654   47899999977


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .+..    ...+.  ..|.+.++++++.|..+.|++|+.+|.|++||++..+...   .++.         ++ ..    
T Consensus      2324 ~~~~----~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h---~~~~---------~~-~~---- 2380 (2439)
T KOG1064|consen 2324 LPPM----NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH---TFQA---------LD-TR---- 2380 (2439)
T ss_pred             cCcc----cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH---Hhhh---------hh-hh----
Confidence            5432    22333  7899999999999999999999999999999999877766   4432         33 22    


Q ss_pred             ccEEEEeecCCcEEEEEeeec
Q 037555          214 HGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~  234 (298)
                       .++++|+..|.|+||++...
T Consensus      2381 -~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2381 -EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             -heeeccCcccceEEEEcccc
Confidence             69999999999999999865

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=3.9e-12  Score=101.44  Aligned_cols=173  Identities=18%  Similarity=0.213  Sum_probs=135.5

Q ss_pred             eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCC
Q 037555           96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRD  173 (298)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  173 (298)
                      ...+..|.+.|..+.|...|..+++++.|..|.+||.....      ..+....+|...|..-.|.|  +.+.+++++.|
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceecccc
Confidence            34567899999999999999999999999999999998742      23344467888888888988  45789999999


Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
                      |.+++=.+...........+..|.++|.-++.-|..+    ..|.+++.|+.+.-+|++......             .+
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~-------------~~  271 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAE-------------KF  271 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccc-------------ee
Confidence            9999887765444443335556999999999999987    789999999999999998874321             11


Q ss_pred             ccCCcccc---eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          254 DPFACHVA---AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .....+..   ...+++..|..+      +.+++++.|..+++||.+
T Consensus       272 ~cr~~~~~~~v~L~~Ia~~P~nt------~~faVgG~dqf~RvYD~R  312 (559)
T KOG1334|consen  272 VCREADEKERVGLYTIAVDPRNT------NEFAVGGSDQFARVYDQR  312 (559)
T ss_pred             eeeccCCccceeeeeEecCCCCc------cccccCChhhhhhhhccc
Confidence            11122333   577889999874      799999999999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=6.6e-10  Score=93.60  Aligned_cols=173  Identities=14%  Similarity=0.134  Sum_probs=112.2

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      ...|.++|..... ...+..+...+...+|+|||++|+.+..+   ..|++||+.++.        ...+..+...+..+
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~  239 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAP  239 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccce
Confidence            4568888876433 34455566778899999999998877654   479999987632        12223345566778


Q ss_pred             EEccCCCEEEEe-eCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEee
Q 037555          159 SWNPFGHEFATG-SRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSIS  232 (298)
Q Consensus       159 ~~~~~~~~l~~~-~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~  232 (298)
                      +|+|+++.|+.. +.++  .|.+||+.++...    .+..+........|+|++     ..|+..+ .++  .|+++++.
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg-----~~l~~~s~~~g~~~iy~~d~~  310 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDG-----KSIAFTSDRGGSPQIYMMDAD  310 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCC-----CEEEEEECCCCCceEEEEECC
Confidence            999999877644 4444  5888998876533    233344445577899988     5665544 344  46666665


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC---cEEEeEe
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN---TVRVFQV  296 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iw~~  296 (298)
                      ++             . ...+.   .+...+..+.|+|++       .+|+.++.++   .|.+||+
T Consensus       311 ~~-------------~-~~~l~---~~~~~~~~~~~spdg-------~~i~~~~~~~~~~~i~~~d~  353 (417)
T TIGR02800       311 GG-------------E-VRRLT---FRGGYNASPSWSPDG-------DLIAFVHREGGGFNIAVMDL  353 (417)
T ss_pred             CC-------------C-EEEee---cCCCCccCeEECCCC-------CEEEEEEccCCceEEEEEeC
Confidence            43             1 11221   234456778999999       6777777665   6677765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=6.6e-10  Score=93.07  Aligned_cols=172  Identities=17%  Similarity=0.106  Sum_probs=104.4

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEe-CCC
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR  125 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  125 (298)
                      ..+....+.....+|+|||+.|+..+...+..+..+.+|++..+   +................|+|||+.|+..+ .+|
T Consensus       224 ~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g  303 (428)
T PRK01029        224 KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG  303 (428)
T ss_pred             eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence            33444455566789999999988775321112334455776643   22222222223446789999999777655 467


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      ...+|.+.....    ......+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++...    +......+..
T Consensus       304 ~~~ly~~~~~~~----g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~~~~~~  375 (428)
T PRK01029        304 RPRIYIMQIDPE----GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSPENKES  375 (428)
T ss_pred             CceEEEEECccc----ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCCCCccc
Confidence            666665542111    11123333444566788999999988877643   469999998876532    2222345678


Q ss_pred             EEEeeccccCCccEEE-Eeec--CCcEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLA-VGME--SGVIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~-~g~~--dg~i~vwd~~~~  234 (298)
                      ..|+|++     ..|+ ++..  ...|+++|+..+
T Consensus       376 p~wSpDG-----~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        376 PSWAIDS-----LHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             eEECCCC-----CEEEEEECCCCCceEEEEECCCC
Confidence            9999998     4555 4433  346778887654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=2e-08  Score=78.03  Aligned_cols=216  Identities=8%  Similarity=0.089  Sum_probs=139.3

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEeC-CCeEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFS  128 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  128 (298)
                      .+...++=|+|+|+++.|.++..+  +++|.|-.|.++.  |+.  +........+-.-+++++++++++++.. .|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~--~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEP--GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEec--CCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            456778899999999999998764  2467787777764  443  2222222334478999999999988865 68999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCc----------eEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCC
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRI----------IWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                      ++.++.....    ........|.+.          +....+.|+++++++..- --+|.+|++..+.............
T Consensus       115 v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G  190 (346)
T COG2706         115 VYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG  190 (346)
T ss_pred             EEEcccCCcc----ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence            9998764321    112122223333          788899999999998863 3469999998765443222222345


Q ss_pred             CceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCCC
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHEK  273 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~  273 (298)
                      ...+.|.|+|++     ++....+ -+++|-+|.........         ..+..+..+.   .-......|..+++| 
T Consensus       191 ~GPRHi~FHpn~-----k~aY~v~EL~stV~v~~y~~~~g~~---------~~lQ~i~tlP~dF~g~~~~aaIhis~dG-  255 (346)
T COG2706         191 AGPRHIVFHPNG-----KYAYLVNELNSTVDVLEYNPAVGKF---------EELQTIDTLPEDFTGTNWAAAIHISPDG-  255 (346)
T ss_pred             CCcceEEEcCCC-----cEEEEEeccCCEEEEEEEcCCCceE---------EEeeeeccCccccCCCCceeEEEECCCC-
Confidence            668999999999     5665555 48999999998741110         1222221111   123456788899998 


Q ss_pred             CCCCcceEEEeeeC-CCcEEEeEe
Q 037555          274 PKNSRTMQLASCGA-DNTVRVFQV  296 (298)
Q Consensus       274 ~~~~~~~~l~s~~~-d~~i~iw~~  296 (298)
                            ++|.++.. ...|-+|.+
T Consensus       256 ------rFLYasNRg~dsI~~f~V  273 (346)
T COG2706         256 ------RFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             ------CEEEEecCCCCeEEEEEE
Confidence                  67766642 235555544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=9.5e-11  Score=95.61  Aligned_cols=163  Identities=16%  Similarity=0.279  Sum_probs=124.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc------ccccc-----cEEEEEEcCCCCEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL------QSHSL-----TVTQIRFSHDDNLL  118 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~------~~~~~-----~v~~~~~~~~~~~l  118 (298)
                      ..|....++++++..++...+|++|     +.+|.|..||.+....+.++      ..|.+     .|+++.|+.+|-.+
T Consensus       169 ~P~~~~~~~lN~v~in~~hgLla~G-----t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  169 NPFETDSGELNVVSINEEHGLLACG-----TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             cccccccccceeeeecCccceEEec-----ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence            4444556889999999999999999     56999999999876555443      23443     39999999999999


Q ss_pred             EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555          119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPF  196 (298)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  196 (298)
                      ++|+.+|.+.|||++...      ..+..-....-+|..+.|.+.  ++.+++.. ...++|||-.+++...   .+. .
T Consensus       244 aVGts~G~v~iyDLRa~~------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~a---siE-p  312 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASK------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMA---SIE-P  312 (703)
T ss_pred             EeeccCCcEEEEEcccCC------ceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCcee---ecc-c
Confidence            999999999999999743      222222334568899999875  34555543 4679999999998876   444 4


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ...+..+++-|++     .+++++.+++.+..|=+..
T Consensus       313 t~~lND~C~~p~s-----Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  313 TSDLNDFCFVPGS-----GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cCCcCceeeecCC-----ceEEEecCCCcceeEEccc
Confidence            4568999999988     7999999998888776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=2.2e-08  Score=80.56  Aligned_cols=129  Identities=9%  Similarity=0.141  Sum_probs=101.2

Q ss_pred             CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce-EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555           45 LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA-EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        45 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      .|.-...--+|...|.=..+..++.-++.|.     .|| .+-|+|.++++.. .+...-+.|.++..+++|++++++..
T Consensus       348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt-----~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGT-----NDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             CCCCeeEEcCCCCceEEEEEccCCcceEEec-----cCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcC
Confidence            4443344457888899888888888888884     466 8999999977654 45556778999999999999999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCcc
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSS  186 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~  186 (298)
                      ...|.+.|++++       .....-+...+-|+.+.|+|+++++|-+--+|    .|+++|+..++.
T Consensus       422 r~el~vididng-------nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         422 RFELWVIDIDNG-------NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             ceEEEEEEecCC-------CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            999999999984       33333345567899999999999999887665    589999987654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=4.9e-08  Score=73.72  Aligned_cols=216  Identities=13%  Similarity=0.120  Sum_probs=128.9

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      ++.+.+|++||+..      |..|.|-..+..  ..+...   +.....=..++|+||+.+||.+...|+|++||+....
T Consensus         3 ~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            56678999999883      777877766532  111221   2222344689999999999999999999999987421


Q ss_pred             CCccceeeeE-EeeccCCceEEEEEccC------CCEEEEeeCCCeEEEEEccCC--cceeeeee--c-CCCCCceEEEE
Q 037555          137 TGEIDYQLIA-RQEAHKRIIWSCSWNPF------GHEFATGSRDKTVKIWAVENK--SSVKQILA--L-PPFNSSVTALS  204 (298)
Q Consensus       137 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~--~-~~~~~~v~~~~  204 (298)
                      .-.  ..+.. ........|..+.|.+-      ...|++-..+|.++-|-+..+  +.-.....  + ..+...|.++.
T Consensus        77 lf~--I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   77 LFV--IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             eEE--cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            100  00000 00112346677777642      235777778888887776332  22221112  2 23467899999


Q ss_pred             EeeccccCCccEEEEee-cCC----------cEEEEEeeecccccc----cCCCCC-C--cceeeee------ccCCccc
Q 037555          205 WVGLDRQKNHGFLAVGM-ESG----------VIELWSISVNRTNDV----STPAPS-T--ANIIIRF------DPFACHV  260 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~-~dg----------~i~vwd~~~~~~~~~----~~~~~~-~--~~~~~~~------~~~~~~~  260 (298)
                      ++|..     ++|++|+ ...          -+..|.+-++.+-..    ...... .  ......+      .......
T Consensus       155 y~p~h-----~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~  229 (282)
T PF15492_consen  155 YHPKH-----RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ  229 (282)
T ss_pred             EcCCC-----CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence            99987     4555554 322          366777755432111    000000 0  0011111      1112245


Q ss_pred             ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..|..|..|||+       .+|++...+|.|.+|++.
T Consensus       230 d~i~kmSlSPdg-------~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  230 DGIFKMSLSPDG-------SLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CceEEEEECCCC-------CEEEEEEcCCeEEEEecC
Confidence            679999999999       899999999999999974

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1e-10  Score=98.29  Aligned_cols=225  Identities=16%  Similarity=0.266  Sum_probs=154.4

Q ss_pred             EEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           50 HKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..+.||...|+.+.|+|..+ .+++++     .|..+..||+++.. ++..+.........++|+-....+.+.+....|
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcs-----vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCS-----VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeecc-----ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence            45679999999999998654 677774     58899999998754 444455555667889998855556666677889


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      ++||.+.+      ..++..+++|...|+.++|+. ....+.+++.|++|+.||.........  .......+|..-.+.
T Consensus       183 ~vwd~r~g------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  183 FVWDLRKG------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTTNFPIWRGRYL  254 (1081)
T ss_pred             EEEeccCC------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccccCcceecccc
Confidence            99999986      456778888999999999986 346788999999999999876543221  222356788888888


Q ss_pred             eccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC---CCCCcceEE
Q 037555          207 GLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK---PKNSRTMQL  282 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~l  282 (298)
                      |.+.    .+++.-. .+..+.+++.++........      .....++.+.+|...|....|-..+.   ........|
T Consensus       255 Pfg~----g~~~mp~~G~n~v~~~~c~n~d~e~n~~------~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL  324 (1081)
T KOG0309|consen  255 PFGE----GYCIMPMVGGNMVPQLRCENSDLEWNVF------DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL  324 (1081)
T ss_pred             ccCc----eeEeccccCCeeeeeccccchhhhhccc------cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence            8874    3333222 22345555444321110000      12233444778999999888876543   112234689


Q ss_pred             EeeeCCCcEEEeEec
Q 037555          283 ASCGADNTVRVFQVN  297 (298)
Q Consensus       283 ~s~~~d~~i~iw~~~  297 (298)
                      +|-+.|..+|+|-+.
T Consensus       325 VTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  325 VTWSKDQTLRLWPID  339 (1081)
T ss_pred             EEeecCCceEeeecc
Confidence            999999999999764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.20  E-value=7.6e-10  Score=86.61  Aligned_cols=157  Identities=14%  Similarity=0.140  Sum_probs=108.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe---EEEEEc
Q 037555          105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT---VKIWAV  181 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~~wd~  181 (298)
                      ....+..++.+++++.+..+....++++......   .+...... ....-+.+.|..+......+..-|.   +.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG---AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCc---ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            3445667788899999998888888888764331   22222222 2223344555555555555544444   445544


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA  261 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (298)
                      ..+...    .+-+|-+.++.++|+|++     ++|+++..|..|+|-.+...             ..+..+  .-||..
T Consensus       140 ~~~~~~----~~lGhvSml~dVavS~D~-----~~IitaDRDEkIRvs~ypa~-------------f~Iesf--clGH~e  195 (390)
T KOG3914|consen  140 DSGRCE----PILGHVSMLLDVAVSPDD-----QFIITADRDEKIRVSRYPAT-------------FVIESF--CLGHKE  195 (390)
T ss_pred             cccCcc----hhhhhhhhhheeeecCCC-----CEEEEecCCceEEEEecCcc-------------cchhhh--ccccHh
Confidence            433322    445799999999999999     89999999999999887654             333333  457999


Q ss_pred             eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      -|..++.-++.        .|+++|.|++|++||+.
T Consensus       196 FVS~isl~~~~--------~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  196 FVSTISLTDNY--------LLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             heeeeeeccCc--------eeeecCCCCcEEEEecc
Confidence            99999998875        79999999999999985

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=2.9e-08  Score=82.79  Aligned_cols=155  Identities=7%  Similarity=-0.019  Sum_probs=97.4

Q ss_pred             ceEEEEEcCCCCE-EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCC--CeEEEEEec
Q 037555           58 ELFSLCCDHQGKL-VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRD--RQFSVFAIQ  133 (298)
Q Consensus        58 ~v~~~~~s~~~~~-l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--g~i~iwd~~  133 (298)
                      .+....|+|+|+. ++..+.+  ..+..|.++|+.+++...... ..+......|+|||+.++. .+.+  ..|.++++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~--~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYG--ERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEcc--CCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            7789999999985 6655542  125689999998876544333 4555667889999986654 4434  456666765


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-C--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-K--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      .+.        ...+..+........|+|||+.|+..+.. +  .|.+.|+.+++... + ...+.    ....|+|++ 
T Consensus       266 ~g~--------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~g~----~~~~~SPDG-  330 (419)
T PRK04043        266 TKT--------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFHGK----NNSSVSTYK-  330 (419)
T ss_pred             CCc--------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccCCC----cCceECCCC-
Confidence            421        23333333333456899999988877642 3  57888887766533 1 11111    124899999 


Q ss_pred             cCCccEEEEeecC---------CcEEEEEeeec
Q 037555          211 QKNHGFLAVGMES---------GVIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~d---------g~i~vwd~~~~  234 (298)
                          ..|+.....         ..|.+.|+.++
T Consensus       331 ----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        331 ----NYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             ----CEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence                555554432         35777777654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=4e-09  Score=86.50  Aligned_cols=148  Identities=19%  Similarity=0.234  Sum_probs=122.4

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ..++-|     ...|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+...       ...++
T Consensus        71 ~~lvlg-----t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-------~~~~~  138 (541)
T KOG4547|consen   71 SMLVLG-----TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-------KVIIR  138 (541)
T ss_pred             eEEEee-----cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-------ceeee
Confidence            355556     568999999999998877765  6999999999999888999999999999999987       66778


Q ss_pred             EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE-EeecCCc
Q 037555          147 RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA-VGMESGV  225 (298)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~g~~dg~  225 (298)
                      ........+.+++.+||+..+++++  +.|++||+++.+.+.   .+.+|.++|++++|.-.-..--+.+++ +...+..
T Consensus       139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            8888888899999999999999987  689999999999888   899999999999998871011113444 4445667


Q ss_pred             EEEEEeee
Q 037555          226 IELWSISV  233 (298)
Q Consensus       226 i~vwd~~~  233 (298)
                      +.+|-++.
T Consensus       214 i~~w~v~~  221 (541)
T KOG4547|consen  214 ITVWVVEK  221 (541)
T ss_pred             eeEEEEEc
Confidence            88888775

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=4.2e-08  Score=80.27  Aligned_cols=199  Identities=15%  Similarity=0.249  Sum_probs=128.1

Q ss_pred             CCCceEEEEEcCCC--CEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEcCCCC-EEEEEe--CC--
Q 037555           55 HGNELFSLCCDHQG--KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFSHDDN-LLLSVS--RD--  124 (298)
Q Consensus        55 h~~~v~~~~~s~~~--~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~--~d--  124 (298)
                      |...|+.+.+||.+  ..+|+---+..+.-..|+||.......-..+..   ....=-.+.|++-|. +|+.++  -|  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            56778999999863  355543322235678999998863222111110   112223577887665 232222  23  


Q ss_pred             -------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCC
Q 037555          125 -------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       125 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~  195 (298)
                             .++++.+++.       ......+ .-.++|.++.|+|+++.|+++.  .--.+.++|++. ..+.   .+  
T Consensus       244 n~SYYGEq~Lyll~t~g-------~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~---df--  309 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQG-------ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF---DF--  309 (566)
T ss_pred             CccccccceEEEEEecC-------ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE---eC--
Confidence                   3577777662       2222232 2478999999999998887764  356799999985 3333   44  


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      .+++-.++-|+|.+     .+|+.++-   -|.|-|||+.+.             +++..+.     ...-+-+.|+|||
T Consensus       310 ~egpRN~~~fnp~g-----~ii~lAGFGNL~G~mEvwDv~n~-------------K~i~~~~-----a~~tt~~eW~PdG  366 (566)
T KOG2315|consen  310 PEGPRNTAFFNPHG-----NIILLAGFGNLPGDMEVWDVPNR-------------KLIAKFK-----AANTTVFEWSPDG  366 (566)
T ss_pred             CCCCccceEECCCC-----CEEEEeecCCCCCceEEEeccch-------------hhccccc-----cCCceEEEEcCCC
Confidence            35667899999999     66666553   489999999875             4444432     2334568999999


Q ss_pred             CCCCCcceEEEeeeC------CCcEEEeEec
Q 037555          273 KPKNSRTMQLASCGA------DNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~------d~~i~iw~~~  297 (298)
                             .+++|+..      |+.++||++.
T Consensus       367 -------e~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  367 -------EYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             -------cEEEEEeccccEEecCCeEEEEec
Confidence                   88888875      6889999864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.17  E-value=7.6e-10  Score=81.92  Aligned_cols=220  Identities=12%  Similarity=0.106  Sum_probs=127.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcCCCCEEEEEeC----
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSR----  123 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~----  123 (298)
                      .+.+..|+++-.+-+.+-.++.++++     .+||.+.+.+.+....+ ..+..-...-.+.+....++.+.++..    
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~-----~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIG-----YADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN  156 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEec-----CCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe
Confidence            44444555544444445556778888     56999999998652111 111111111122333334555554332    


Q ss_pred             -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                       -+..+.|+++..+       ...........|.+++-+|. .+.++.|+.||.+.+||.++...+.  ..+..|+.++.
T Consensus       157 ~~d~~~a~~~~p~~-------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~  227 (319)
T KOG4714|consen  157 AQDNFYANTLDPIK-------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIW  227 (319)
T ss_pred             eccceeeecccccc-------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhh
Confidence             2345566665422       11111112234899999994 4677788899999999999875443  34667999999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC-------CCCCCcceeeeecc-CCcccceEEEEEeecCCC
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST-------PAPSTANIIIRFDP-FACHVAAVNRMAWKTHEK  273 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  273 (298)
                      .+-|+|..+    ..|+++++||.+.-||..+........       ...+..+....+.. +......|+++...  + 
T Consensus       228 eV~FHpk~p----~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g-  300 (319)
T KOG4714|consen  228 EVHFHPKNP----EHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--G-  300 (319)
T ss_pred             heeccCCCc----hheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc--C-
Confidence            999999876    899999999999999987431111000       01111111111111 11223345554443  3 


Q ss_pred             CCCCcceEEEeeeCCCcEEEeE
Q 037555          274 PKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                            ..|++|+.-+.|++++
T Consensus       301 ------~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  301 ------PCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ------ceEEeccccceEEEec
Confidence                  6789998888888875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.4e-08  Score=85.79  Aligned_cols=172  Identities=15%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ..|.++|.+.++ ...+..+...+....|+|||+.|+..+.+   ..|.+|++..+.        ...+....+.+....
T Consensus       179 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~  249 (430)
T PRK00178        179 YTLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPA  249 (430)
T ss_pred             eEEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeE
Confidence            368888887444 34455567788999999999988776543   368888987532        122222334455789


Q ss_pred             EccCCCEEEE-eeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEeee
Q 037555          160 WNPFGHEFAT-GSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSISV  233 (298)
Q Consensus       160 ~~~~~~~l~~-~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~~  233 (298)
                      |+|+++.|+. .+.+|  .|.++|+.++...    .+..+........|+|++     ..|+..+ .++  .|+++++.+
T Consensus       250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg-----~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDG-----RTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCC-----CEEEEEECCCCCceEEEEECCC
Confidence            9999988874 44444  5888899876543    233344556678899998     4554444 444  466666654


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-CC--cEEEeEe
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-DN--TVRVFQV  296 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iw~~  296 (298)
                      ++             . ..+. ..+  .......|+|++       ..|+..+. ++  .|.+||+
T Consensus       321 g~-------------~-~~lt-~~~--~~~~~~~~Spdg-------~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        321 GR-------------A-ERVT-FVG--NYNARPRLSADG-------KTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             CC-------------E-EEee-cCC--CCccceEECCCC-------CEEEEEEccCCceEEEEEEC
Confidence            42             1 1111 111  222356899998       66665553 33  3666665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=3e-08  Score=90.00  Aligned_cols=225  Identities=15%  Similarity=0.188  Sum_probs=141.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCC-ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTA-AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVF  130 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw  130 (298)
                      +.+.-..++|-.||.++|+.+.+.... -..++||+-+ |+...+-..-.+--.+++|.|.|++||+.-.   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            344566899999999999987643222 5799999976 6655444433334457899999999998865   3456666


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCCCceEEEEEeecc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      .-+--..    +.....+......|..+.|++++..||..-.|. |.+|-..+..-. +....+. ....+..+.|+|..
T Consensus       287 ErNGLrh----geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  287 ERNGLRH----GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEK  360 (928)
T ss_pred             ecCCcEe----eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCC
Confidence            6442211    222222234556899999999999999987665 999988765421 1111222 23345569999987


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCC---------Ccceeeeecc----------CCcccceEEEEEeec
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS---------TANIIIRFDP----------FACHVAAVNRMAWKT  270 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~----------~~~~~~~v~~~~~~~  270 (298)
                      +    ..|...+.+|.+..+++.-.........+.+         ..-.+..+..          .-....+|.+++|++
T Consensus       361 p----~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~  436 (928)
T PF04762_consen  361 P----LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP  436 (928)
T ss_pred             C----CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence            5    6777777777776666543211110000000         0000000000          001357899999999


Q ss_pred             CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          271 HEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++       ..+++-..||.|.+|...
T Consensus       437 ~~-------~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  437 SN-------SRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CC-------CeEEEEECCCCEEEEEec
Confidence            98       679999999999999853

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.14  E-value=2.2e-08  Score=74.75  Aligned_cols=201  Identities=12%  Similarity=0.022  Sum_probs=129.4

Q ss_pred             EEEEcC-----CCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEec
Q 037555           61 SLCCDH-----QGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        61 ~~~~s~-----~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .+.|-|     ...+||.|     +..|...+|...+.+.. .....|...|+-+.=.- ....+..++.|.+++++++.
T Consensus        72 g~~F~p~s~~~kc~~la~g-----G~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~  146 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADG-----GASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS  146 (344)
T ss_pred             cccccchHhhccccEEEec-----cccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe
Confidence            455655     33477887     45899999998865432 33333444333221111 22356778889999999988


Q ss_pred             cCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          134 RTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      .....       .  ..|..  .+.++.++++++++++.++...|..|.+..................-.+..|+...  
T Consensus       147 ~~s~~-------~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~--  215 (344)
T KOG4532|consen  147 GDSNK-------F--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND--  215 (344)
T ss_pred             cCccc-------c--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--
Confidence            64321       1  11222  37889999999999999999999999997644322111233344555678888887  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                         ..+|++.+||.+.|||++....+..            ... ....|.+.+..+.|++.+.     -.+|+-.-.=+.
T Consensus       216 ---~~FAv~~Qdg~~~I~DVR~~~tpm~------------~~sstrp~hnGa~R~c~Fsl~g~-----lDLLf~sEhfs~  275 (344)
T KOG4532|consen  216 ---LQFAVVFQDGTCAIYDVRNMATPMA------------EISSTRPHHNGAFRVCRFSLYGL-----LDLLFISEHFSR  275 (344)
T ss_pred             ---ceEEEEecCCcEEEEEecccccchh------------hhcccCCCCCCceEEEEecCCCc-----ceEEEEecCcce
Confidence               7999999999999999997643221            111 1334889999999998652     134444333456


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      +.+-|++
T Consensus       276 ~hv~D~R  282 (344)
T KOG4532|consen  276 VHVVDTR  282 (344)
T ss_pred             EEEEEcc
Confidence            6666654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=1.1e-10  Score=95.11  Aligned_cols=169  Identities=17%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCCCEEEEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      +..+.||+..|..++--.+.+.++++++     |.+|++|.++..       .+..+++.|+.+|.++.|-.+.++++++
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASk-----DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASK-----DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccC-----CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence            4567899999999987777788888855     999999998632       2455678899999999999887777665


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccC--CCEE-EEeeCCCeEEEEEccCCcceeeeeec--C
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPF--GHEF-ATGSRDKTVKIWAVENKSSVKQILAL--P  194 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~--~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~--~  194 (298)
                        ||-|++||.-.+.       ++...  ....+.+..+..-++  ...+ +.++...+|+++|.+..+...++...  +
T Consensus       803 --D~giHlWDPFigr-------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~  873 (1034)
T KOG4190|consen  803 --DGGIHLWDPFIGR-------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP  873 (1034)
T ss_pred             --cCcceeecccccc-------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence              8999999976532       22211  111233333433342  3333 44467889999999988766654433  3


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      +.+..+++++..+.|     +.++.+-..|.|.+.|.+++..
T Consensus       874 ~Pna~~R~iaVa~~G-----N~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  874 GPNALTRAIAVADKG-----NKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             CCchheeEEEeccCc-----chhhHHhcCCcEEEEecCCCce
Confidence            445668999999998     8999999999999999998853

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=5.3e-10  Score=85.90  Aligned_cols=166  Identities=14%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----ee----eccccccccEEEEEEcCC-CCEEEEEeCC
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AM----GRLQSHSLTVTQIRFSHD-DNLLLSVSRD  124 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  124 (298)
                      +|+.-|.++.++.|+..++++      +|=.|.+|+++--.    .+    ..+..-+.-|++..|+|. -+.++-.+..
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             cceeEeeeeeecCccceEeec------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            688899999999999999998      47899999986321    11    112234567899999994 4577778889


Q ss_pred             CeEEEEEeccCCCCcccee---------eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecC
Q 037555          125 RQFSVFAIQRTGTGEIDYQ---------LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALP  194 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~  194 (298)
                      |+|++-|++....-....+         ...-+..--..|..+.|+++|+++++-+. -+|++||+. ..+++.   +++
T Consensus       236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~---t~~  311 (433)
T KOG1354|consen  236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE---TYP  311 (433)
T ss_pred             CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce---EEe
Confidence            9999999985321110000         00111122346788999999999987664 679999994 344443   222


Q ss_pred             CCC------------C---ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          195 PFN------------S---SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       195 ~~~------------~---~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .|.            .   .-..++|+.++     .++++|+....+++|+...+
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-----~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGND-----SYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCc-----ceEecccccceEEEecCCCC
Confidence            221            1   12457788877     79999999999999996544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=2.8e-09  Score=89.64  Aligned_cols=158  Identities=14%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---------------eeeccccccccEEEEEEcCCCCEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---------------AMGRLQSHSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~  120 (298)
                      .....|+.|+....++|.|     +.||.++|..+.+..               .-+++.+|...|.-+.|+.+.+.|-+
T Consensus        14 nvkL~c~~WNke~gyIAcg-----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt   88 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACG-----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT   88 (1189)
T ss_pred             CceEEEEEEcccCCeEEec-----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence            4467899999999999999     569999999876421               12457899999999999999999999


Q ss_pred             EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      +..+|.|.+|-+-.++     +-....-....+.|.+++|+.+|..++....||.|.+=.++..+....  .++  ....
T Consensus        89 SDt~GlIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l  159 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLL  159 (1189)
T ss_pred             cCCCceEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hhec
Confidence            9999999999987643     111112223456789999999999999999999888776665433220  111  1223


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ..+.|+++.     ..++.+-..|.+.+||..
T Consensus       160 ~hv~ws~D~-----~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  160 AHVLWSEDL-----EQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             cceeecccH-----HHHHhhhcCCcEEEeccc
Confidence            456677766     455555556666666654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=5e-08  Score=90.14  Aligned_cols=220  Identities=8%  Similarity=0.028  Sum_probs=131.0

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----------c-------cccEEEEEEcC-CCCEEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----------H-------SLTVTQIRFSH-DDNLLL  119 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----------~-------~~~v~~~~~~~-~~~~l~  119 (298)
                      ....+++++++..|+++.    ...+.|+++|..++.. .++.+          .       -..-..++++| ++.+++
T Consensus       625 ~P~GIavd~~gn~LYVaD----t~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV  699 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVAD----TENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI  699 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEe----CCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence            357889998888776663    2357899999876543 22211          0       11235799999 566777


Q ss_pred             EEeCCCeEEEEEeccCCCCcccee-eeEEee------ccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcceeee-
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQ-LIARQE------AHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSSVKQI-  190 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~-  190 (298)
                      +.+.++.|++||............ ......      ..-.....++++|+++.|++ -+.++.|++||+.++...... 
T Consensus       700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            778889999999865321000000 000000      01123467999999885554 456789999999865421100 


Q ss_pred             ---------eecCC--------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555          191 ---------LALPP--------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       191 ---------~~~~~--------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
                               ..+-.        .-.....+++++++     .++++-..++.|++||..++..............   .-
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-----~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---dG  851 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-----QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---DG  851 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCC-----cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---CC
Confidence                     00000        01124688888887     6888888899999999876532111000000000   00


Q ss_pred             ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ....+.-.....|++++++       +++++-+.++.|++||++
T Consensus       852 ~~~~a~l~~P~GIavd~dG-------~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        852 KALKAQLSEPAGLALGENG-------RLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             cccccccCCceEEEEeCCC-------CEEEEECCCCEEEEEECC
Confidence            0011223456789999999       889999999999999974

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=2.7e-08  Score=84.07  Aligned_cols=172  Identities=14%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC--eEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR--QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ..|.++|...... +.+..+...+....|+|||+.|+..+. ++  .|.+||+..+.     ...+.   ...+......
T Consensus       198 ~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~~lt---~~~g~~~~~~  268 (448)
T PRK04792        198 YQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----REKVT---SFPGINGAPR  268 (448)
T ss_pred             eEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEec---CCCCCcCCee
Confidence            4677888764433 445556778899999999998877654 33  57788876532     11222   2223345689


Q ss_pred             EccCCCEEEE-eeCCCe--EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEeee
Q 037555          160 WNPFGHEFAT-GSRDKT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSISV  233 (298)
Q Consensus       160 ~~~~~~~l~~-~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~~  233 (298)
                      |+|+++.|+. .+.+|.  |.++|+.+++..    .+..+.......+|+|++     ..|+..+ .++.  |+++|+.+
T Consensus       269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG-----~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDG-----KSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCC-----CEEEEEECCCCCceEEEEECCC
Confidence            9999998765 455664  777888776542    333344556788999998     4555444 4444  55555544


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-CCcEEEeEe
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-DNTVRVFQV  296 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iw~~  296 (298)
                      ++              ...+. ..+  ......+|+||+       .+|+..+. ++..+||-+
T Consensus       340 g~--------------~~~Lt-~~g--~~~~~~~~SpDG-------~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        340 GK--------------VSRLT-FEG--EQNLGGSITPDG-------RSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             CC--------------EEEEe-cCC--CCCcCeeECCCC-------CEEEEEEecCCceEEEEE
Confidence            31              11221 111  223456899999       56655543 455555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5e-07  Score=70.46  Aligned_cols=209  Identities=10%  Similarity=0.085  Sum_probs=138.1

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeec--ccccccc----------EEEEEEcCCCCEEEEEeC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGR--LQSHSLT----------VTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~  123 (298)
                      .+.+-++++++|++|+++..    ..|.|.++.++. |.....  +..|.+.          +....+.|+++++++...
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY----~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANY----HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEc----cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            34488999999999999985    468999999865 332211  2225544          889999999999988764


Q ss_pred             -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCC-cceeeeeecC------
Q 037555          124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENK-SSVKQILALP------  194 (298)
Q Consensus       124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~-~~~~~~~~~~------  194 (298)
                       --.|.+|++..+.....   ....+ .....-+.|.|+|++++.+.... +++|.+|..... .....++.+.      
T Consensus       165 G~Dri~~y~~~dg~L~~~---~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPA---DPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             CCceEEEEEcccCccccc---ccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence             23688999985432111   11122 33455688999999998887764 889999998874 2223222222      


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK  273 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  273 (298)
                      ........+..++++     .+|.++.. ...|.+|.+....            ..+..+.....+......+.|++.+ 
T Consensus       241 ~g~~~~aaIhis~dG-----rFLYasNRg~dsI~~f~V~~~~------------g~L~~~~~~~teg~~PR~F~i~~~g-  302 (346)
T COG2706         241 TGTNWAAAIHISPDG-----RFLYASNRGHDSIAVFSVDPDG------------GKLELVGITPTEGQFPRDFNINPSG-  302 (346)
T ss_pred             CCCCceeEEEECCCC-----CEEEEecCCCCeEEEEEEcCCC------------CEEEEEEEeccCCcCCccceeCCCC-
Confidence            123456788899998     67777653 3468888776431            2222222223355557889999998 


Q ss_pred             CCCCcceEEEeeeCC-CcEEEeEec
Q 037555          274 PKNSRTMQLASCGAD-NTVRVFQVN  297 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d-~~i~iw~~~  297 (298)
                            ++|+++..+ ..|.+|..+
T Consensus       303 ------~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         303 ------RFLIAANQKSDNITVFERD  321 (346)
T ss_pred             ------CEEEEEccCCCcEEEEEEc
Confidence                  788777754 468877653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=9.7e-10  Score=84.55  Aligned_cols=168  Identities=13%  Similarity=0.237  Sum_probs=121.8

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      +-.|-+-+++++.. +.|. ..+.|.++.|...+++++.|..+|.|..+|++....+.  ..+... ..|...|+++..-
T Consensus       233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--~~~a~r-lyh~Ssvtslq~L  307 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--GWCAQR-LYHDSSVTSLQIL  307 (425)
T ss_pred             cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC--CcceEE-EEcCcchhhhhhh
Confidence            67788889887643 4455 67789999999989999999999999999999864433  222333 3588999999877


Q ss_pred             c-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          162 P-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       162 ~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                      . ++++|++.+-+|+|++||++.-++...+..+.+|   |+..+..|..-.+.+..++++++|...+||.++.+      
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g------  378 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG------  378 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEEccCeeEEEEEecccC------
Confidence            7 7889999999999999999987774444466655   44444444443344478999999999999999987      


Q ss_pred             CCCCCCcceeeeec-cCCcccceEEEEEeec
Q 037555          241 TPAPSTANIIIRFD-PFACHVAAVNRMAWKT  270 (298)
Q Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~  270 (298)
                             ..+..+. +.......+.+++|..
T Consensus       379 -------hLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  379 -------HLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             -------ceeeccCCCCccccccccceehhc
Confidence                   4433322 1223344567777764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=4.8e-10  Score=91.57  Aligned_cols=177  Identities=15%  Similarity=0.181  Sum_probs=129.2

Q ss_pred             eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe
Q 037555           96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT  175 (298)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (298)
                      +..+.+|...|..++--.+.+-+++++.|.++++|.++....+.....+..++..|..+|..+.|-.+-++++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999998877888999999999999999986554433345667788999999999999888777755  788


Q ss_pred             EEEEEccCCcceeeeeecCCCCCceEEEEEeec-cccCCccEEEEe-ecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555          176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGL-DRQKNHGFLAVG-MESGVIELWSISVNRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
                      |++||.--++.+..+..-+ ..+.+..+...++ .+    .+++.| +...+|+++|.+..+.           .+...+
T Consensus       806 iHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~----~iliAgcsaeSTVKl~DaRsce~-----------~~E~kV  869 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDR----HILIAGCSAESTVKLFDARSCEW-----------TCELKV  869 (1034)
T ss_pred             ceeecccccchhHhhhcCc-ccCCCceeEecccCcc----hheeeeccchhhheeeecccccc-----------eeeEEe
Confidence            9999987776655332222 2333444444443 21    344444 6788999999987632           333334


Q ss_pred             ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ....+....+.+++..+.|       ++|+.+-.+|+|-+.|.+
T Consensus       870 cna~~Pna~~R~iaVa~~G-------N~lAa~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKG-------NKLAAALSNGCIAILDAR  906 (1034)
T ss_pred             ccCCCCchheeEEEeccCc-------chhhHHhcCCcEEEEecC
Confidence            3345667789999999999       899999899999887754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.12  E-value=1.9e-09  Score=84.46  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .+..+..++.+++||.+-     .+....++++.....    +.... -...-+++.|..+......+..-|.++-+|+-
T Consensus        64 a~~~~~~s~~~~llAv~~-----~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVAT-----SSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             cccccccCCCceEEEEEe-----CCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeee
Confidence            344556678888888883     356665666543322    22111 22233455555555555554444444444433


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ....     .......+|-.-++.++|+||+++++++..|..|++-.......+..+  .-+|..-|..++..++.    
T Consensus       138 s~~~-----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~~~----  206 (390)
T KOG3914|consen  138 SADS-----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTDNY----  206 (390)
T ss_pred             cccc-----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeeccCc----
Confidence            2111     112344578999999999999999999999999999877765554422  23699999999999875    


Q ss_pred             ccEEEEeecCCcEEEEEeeeccccc
Q 037555          214 HGFLAVGMESGVIELWSISVNRTND  238 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~  238 (298)
                        .|++|+.|++|++||+.+++...
T Consensus       207 --~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  207 --LLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             --eeeecCCCCcEEEEecccCCccc
Confidence              68999999999999999987653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=4.2e-10  Score=83.22  Aligned_cols=152  Identities=15%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccCCcc
Q 037555          112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVENKSS  186 (298)
Q Consensus       112 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~  186 (298)
                      +-.++.++++..||.+.+++.+..      .............-.+.+....++.+.++.-     -+..+.|+++..+.
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~------~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t  171 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKD------LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT  171 (319)
T ss_pred             cccCCceEecCCCceEEEEechHH------HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc
Confidence            334667999999999999998752      1111111111111122233334455544431     23456676665443


Q ss_pred             eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555          187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM  266 (298)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  266 (298)
                      ..   .-......|.+++-+|...    .++++|++||.+-+||.++...               ....+..|..+|+-+
T Consensus       172 ~~---~~~~~~~~v~~l~~hp~qq----~~v~cgt~dg~~~l~d~rn~~~---------------p~S~l~ahk~~i~eV  229 (319)
T KOG4714|consen  172 LI---PSKKALDAVTALCSHPAQQ----HLVCCGTDDGIVGLWDARNVAM---------------PVSLLKAHKAEIWEV  229 (319)
T ss_pred             cc---ccccccccchhhhCCcccc----cEEEEecCCCeEEEEEcccccc---------------hHHHHHHhhhhhhhe
Confidence            22   1111233489999999774    7899999999999999997522               222266799999999


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|+|..+      ..|+++++||.+..||-+
T Consensus       230 ~FHpk~p------~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  230 HFHPKNP------EHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             eccCCCc------hheeEecCCCcEEEEcCC
Confidence            9999875      899999999999999864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.09  E-value=3.3e-09  Score=91.34  Aligned_cols=176  Identities=14%  Similarity=0.122  Sum_probs=131.2

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      ...+..+|+++.+..+...-....|.-++.  +++.+.+|...|+|.+-|.++       .+.+.++..|.+.|..+.. 
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-------~~~iht~~aHs~siSDfDv-  225 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-------FETIHTFDAHSGSISDFDV-  225 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-------Cceeeeeeccccceeeeec-
Confidence            556777888877776655544444555544  678999999999999999988       7889999999999977665 


Q ss_pred             cCCCEEEEeeC---------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          162 PFGHEFATGSR---------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       162 ~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                       .|+.|++++.         |..|+|||+|..+.+.++   . ......-+.|+|.-.    ..+++.+..|...+-|..
T Consensus       226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~-~~~~P~flrf~Psl~----t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---Q-FPYGPQFLRFHPSLT----TRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---c-cccCchhhhhccccc----ceEEEEecccceeecccc
Confidence             5999999985         556899999998877643   2 222235678889775    788999999999999854


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +-..+.         -.+..+.   .....+..+++++++       ..|+.+..+|.|.+|.
T Consensus       297 ~lsNP~---------~~~~~v~---p~~s~i~~fDiSsn~-------~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPP---------AGVKMVN---PNGSGISAFDISSNG-------DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCc---------cceeEEc---cCCCcceeEEecCCC-------ceEEEecccCcEeeec
Confidence            332111         1112222   234559999999999       8999999999999995

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.09  E-value=8.8e-08  Score=87.04  Aligned_cols=203  Identities=17%  Similarity=0.275  Sum_probs=126.9

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC---------------C--------ceeeecccc---------
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG---------------S--------WKAMGRLQS---------  101 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~---------------~--------~~~~~~~~~---------  101 (298)
                      .-...|.|++||||+..|+...     .+++|.+..-.               .        |+...+|+|         
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT-----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~  192 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVT-----GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ  192 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEe-----CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence            3467899999999999999884     36677665421               0        111112211         


Q ss_pred             ---------------ccccEEEEEEcCCCCEEEEEeC---C---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555          102 ---------------HSLTVTQIRFSHDDNLLLSVSR---D---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus       102 ---------------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                                     +...-..+.|-.||.++|+.+.   .   ..++||+-+        +.+........+--..++|
T Consensus       193 ~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--------G~L~stSE~v~gLe~~l~W  264 (928)
T PF04762_consen  193 LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--------GELQSTSEPVDGLEGALSW  264 (928)
T ss_pred             ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--------ceEEeccccCCCccCCccC
Confidence                           1223457889999999998875   2   578899865        3333333333444467899


Q ss_pred             ccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          161 NPFGHEFATGSR---DKTVKIWAVENKSSVKQILALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       161 ~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      .|.|++||+...   ...|.+|.-. +..-..+ .+.  .....|..+.|++++     .+|+.-..|. |.+|-..+..
T Consensus       265 rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF-~l~~~~~~~~v~~l~Wn~ds-----~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  265 RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEF-TLRFDPEEEKVIELAWNSDS-----EILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeE-ecCCCCCCceeeEEEECCCC-----CEEEEEecCC-ceEEEeeCCE
Confidence            999999998864   3346666543 3322222 222  356779999999999     7888877655 9999887652


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .           -.-..+. +. ....+..+.|+|..+      ..|.....+|.+..+++
T Consensus       337 W-----------YLKqei~-~~-~~~~~~~~~Wdpe~p------~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  337 W-----------YLKQEIR-FS-SSESVNFVKWDPEKP------LRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             E-----------EEEEEEE-cc-CCCCCCceEECCCCC------CEEEEEecCCcEEEEEE
Confidence            1           1111111 11 223344588998763      56666666677766554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2e-08  Score=82.14  Aligned_cols=154  Identities=12%  Similarity=0.210  Sum_probs=110.3

Q ss_pred             EEEEEcCCCC-EEEeEecc--C----CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555           60 FSLCCDHQGK-LVASSCKA--Q----STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV--SRDRQFSVF  130 (298)
Q Consensus        60 ~~~~~s~~~~-~l~~~~~~--~----~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  130 (298)
                      ..+.|++-|+ +|+.++.|  .    .....++++.+++.....-.+. ..++|+++.|+|+++-++++  -.-..+.||
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif  299 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF  299 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence            3677887666 33333331  1    1234578888888333333333 58999999999999876654  456789999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      |++        ..++..+  ..++-+++-|+|.|++++.++-+   |.+-+||..+.+.+.   .+...  .-+-+.|+|
T Consensus       300 nlr--------~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~~a~--~tt~~eW~P  364 (566)
T KOG2315|consen  300 NLR--------GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KFKAA--NTTVFEWSP  364 (566)
T ss_pred             cCC--------CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---ccccC--CceEEEEcC
Confidence            988        4455544  35677889999999999888754   789999999977766   54433  345689999


Q ss_pred             ccccCCccEEEEeec------CCcEEEEEeeec
Q 037555          208 LDRQKNHGFLAVGME------SGVIELWSISVN  234 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~------dg~i~vwd~~~~  234 (298)
                      +|     ++++|++.      |+.++||++...
T Consensus       365 dG-----e~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  365 DG-----EYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CC-----cEEEEEeccccEEecCCeEEEEecCc
Confidence            99     78888764      678999998643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=1.8e-10  Score=98.73  Aligned_cols=162  Identities=15%  Similarity=0.119  Sum_probs=120.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--  125 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--  125 (298)
                      ..+.|+.|....+|++|+.+.++|+.|+.     .|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-.  
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~-----~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSH-----AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeec-----cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence            45677889999999999999999999954     89999999999999999999999999999999998777665433  


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-cCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-LPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~  204 (298)
                      ...+|++...      ......+    ..-.++.|+.....-+.|.......+||+.+...+..+.+ ..+.+..-.+..
T Consensus      1168 lsaLW~~~s~------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1168 LSALWDASST------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             hHHHhccccc------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            5678998752      2223333    2346788887655555566556789999999887663211 122333447788


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |+|+.     .+++   .||  .+||++..
T Consensus      1238 FsP~D-----~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1238 FSPCD-----TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             cCCCc-----ceEe---eCc--eeeeeccH
Confidence            99987     4554   455  47999876

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.05  E-value=1.1e-06  Score=70.71  Aligned_cols=217  Identities=7%  Similarity=0.034  Sum_probs=130.3

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEec-----cCCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCK-----AQSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDD  115 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~-----~~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~  115 (298)
                      .+.++..-..+- .+ ++|+++.|+++..     .++..+..|.+||..+++.+..+...       ......++++|||
T Consensus        39 v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg  116 (352)
T TIGR02658        39 VLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN  116 (352)
T ss_pred             EEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC
Confidence            344444333333 24 9999999988864     00115789999999999988776632       1223478999999


Q ss_pred             CEEEEEe-C-CCeEEEEEeccCCCCcc----------------------ceeeeE-Ee------eccCCceEE-------
Q 037555          116 NLLLSVS-R-DRQFSVFAIQRTGTGEI----------------------DYQLIA-RQ------EAHKRIIWS-------  157 (298)
Q Consensus       116 ~~l~~~~-~-dg~i~iwd~~~~~~~~~----------------------~~~~~~-~~------~~~~~~v~~-------  157 (298)
                      ++|++.. . +..|.+.|+...+....                      +..... .+      .....++..       
T Consensus       117 k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~  196 (352)
T TIGR02658       117 KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI  196 (352)
T ss_pred             CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence            9988776 3 68899999876441110                      000000 00      000001100       


Q ss_pred             --EEEcc-CCCEEEEeeCCCeEEEEEccCCc-----ceeeeeecC-----CCCCceEEEEEeeccccCCccEEEEee---
Q 037555          158 --CSWNP-FGHEFATGSRDKTVKIWAVENKS-----SVKQILALP-----PFNSSVTALSWVGLDRQKNHGFLAVGM---  221 (298)
Q Consensus       158 --~~~~~-~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~g~---  221 (298)
                        -.|.+ ++.++++... |.|.+.|+....     ....+ ...     .......-+++++++     ..++...   
T Consensus       197 ~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg-----~~lyV~~~~~  269 (352)
T TIGR02658       197 NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRAR-----DRIYLLADQR  269 (352)
T ss_pred             cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCC-----CEEEEEecCC
Confidence              02234 6666665555 999999964432     21111 111     123344559999988     5555532   


Q ss_pred             -------cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeee-CCCcEE
Q 037555          222 -------ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCG-ADNTVR  292 (298)
Q Consensus       222 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~-~d~~i~  292 (298)
                             ..+.|.++|..+.             +.+..+.    -...+..|+++||+       . +|++.. .++.|.
T Consensus       270 ~~~thk~~~~~V~ViD~~t~-------------kvi~~i~----vG~~~~~iavS~Dg-------kp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       270 AKWTHKTASRFLFVVDAKTG-------------KRLRKIE----LGHEIDSINVSQDA-------KPLLYALSTGDKTLY  325 (352)
T ss_pred             ccccccCCCCEEEEEECCCC-------------eEEEEEe----CCCceeeEEECCCC-------CeEEEEeCCCCCcEE
Confidence                   1247999999877             5555554    24578999999999       5 666444 688899


Q ss_pred             EeEec
Q 037555          293 VFQVN  297 (298)
Q Consensus       293 iw~~~  297 (298)
                      +.|..
T Consensus       326 ViD~~  330 (352)
T TIGR02658       326 IFDAE  330 (352)
T ss_pred             EEECc
Confidence            99863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=7.2e-10  Score=93.32  Aligned_cols=204  Identities=14%  Similarity=0.268  Sum_probs=144.0

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccc-cccccEEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQ-SHSLTVTQIRFSHDD--NLLLSVSRDRQFSVFA  131 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd  131 (298)
                      .+++.++..+|.|+-+|.++.     - -+.+.|+... .+..-+. ...-.|-.+.|+|..  .+-++......-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr-----~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASR-----Q-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhh-----c-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            467889999999999998864     3 3666776532 2222222 112356778888843  2444444455566899


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      +.....    ......+.+|...|+.+.|+|+. ..+++++.|-.+..||++......  .....-......+.|+...+
T Consensus        98 lA~ss~----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   98 LAKSSS----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             hhcCCc----cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccccCceeeecccCc
Confidence            876543    34455677899999999999965 578999999999999999866433  23333455667899998773


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                           -+++.+....|++||.+.+.            .++..   +++|...|+++.|+.-..      ..+.+++.|++
T Consensus       172 -----~vlasshg~~i~vwd~r~gs------------~pl~s---~K~~vs~vn~~~fnr~~~------s~~~s~~~d~t  225 (1081)
T KOG0309|consen  172 -----NVLASSHGNDIFVWDLRKGS------------TPLCS---LKGHVSSVNSIDFNRFKY------SEIMSSSNDGT  225 (1081)
T ss_pred             -----chhhhccCCceEEEeccCCC------------cceEE---ecccceeeehHHHhhhhh------hhhcccCCCCc
Confidence                 44555567789999999774            22233   446899999999987542      57899999999


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      |++||..
T Consensus       226 vkfw~y~  232 (1081)
T KOG0309|consen  226 VKFWDYS  232 (1081)
T ss_pred             eeeeccc
Confidence            9999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=8.9e-08  Score=71.57  Aligned_cols=146  Identities=14%  Similarity=0.083  Sum_probs=104.1

Q ss_pred             CceEEEEEEcCCceeeeccccccc--cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-EeeccCCceEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSL--TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWS  157 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~  157 (298)
                      .|.++++.+++.+...  +..|..  .+.++.+++|++++++.+....|..|.++....     ..+. ......+.-.+
T Consensus       136 ndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se-----y~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE-----YIENIYEAPTSDHGFY  208 (344)
T ss_pred             CCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc-----eeeeeEecccCCCcee
Confidence            3777777777533221  122333  388999999999999999999999999987542     2222 33334445577


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEEccCCcceeee--eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI--LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      ..|+.....||+++.||.+.|||++....+...  .+-+.|.+.++.+.|++.+..   .+|+..-.-+.+.+.|+++..
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l---DLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL---DLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc---eEEEEecCcceEEEEEcccCc
Confidence            889999999999999999999999976544311  123458899999999986531   355555556789999999875


Q ss_pred             c
Q 037555          236 T  236 (298)
Q Consensus       236 ~  236 (298)
                      .
T Consensus       286 ~  286 (344)
T KOG4532|consen  286 N  286 (344)
T ss_pred             e
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=1.9e-09  Score=57.73  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=36.7

Q ss_pred             ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           93 WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      ++++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.1e-09  Score=84.23  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=102.9

Q ss_pred             EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce--eeeeecCCC
Q 037555          119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV--KQILALPPF  196 (298)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~  196 (298)
                      ++.+.+-.+-+-++.++-        .+.+. ..+.|.++.|...++++..|..+|.|..+|++....-  .....+. |
T Consensus       228 fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h  297 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H  297 (425)
T ss_pred             ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c
Confidence            455556677777777531        22222 4567888999988999999999999999999975221  1111232 7


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  276 (298)
                      ++.|+++..-....    .+|++.+.+|+|++||.+..             ++-..+..+.+|...-.-+-++-+.    
T Consensus       298 ~Ssvtslq~Lq~s~----q~LmaS~M~gkikLyD~R~~-------------K~~~~V~qYeGHvN~~a~l~~~v~~----  356 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQ----QKLMASDMTGKIKLYDLRAT-------------KCKKSVMQYEGHVNLSAYLPAHVKE----  356 (425)
T ss_pred             Ccchhhhhhhcccc----ceEeeccCcCceeEeeehhh-------------hcccceeeeeccccccccccccccc----
Confidence            88899998777332    78999999999999999976             4433344466776544433333332    


Q ss_pred             CcceEEEeeeCCCcEEEeEec
Q 037555          277 SRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       277 ~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       ++..++++|.|...|||.++
T Consensus       357 -eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  357 -EEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             -ccceEEEccCeeEEEEEecc
Confidence             23788999999999999975

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=7.5e-08  Score=81.97  Aligned_cols=138  Identities=12%  Similarity=0.136  Sum_probs=108.7

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC------------CEEEEEeC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD------------NLLLSVSR  123 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~  123 (298)
                      ...-.++.|+|.| ++|.|+      ...|.+-|..+.+.++.+..|...|+.+.|.|-.            -+|+++..
T Consensus        15 ~sN~~A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             cccccccccCccc-eEEEec------CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            3446788999876 667775      5789999999999999999999999999998721            25778888


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc---CC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP---FG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS  199 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  199 (298)
                      .|.|.+||+..       ...+..+..|..++..++|-+   +. ..|++-.....|.+|+..+++...   ........
T Consensus        88 ~GrIil~d~~~-------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~i  157 (1062)
T KOG1912|consen   88 SGRIILVDFVL-------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEI  157 (1062)
T ss_pred             cCcEEEEEehh-------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcc
Confidence            99999999987       556677788889999999987   23 466777778899999999998766   44444455


Q ss_pred             eEEEEEeeccc
Q 037555          200 VTALSWVGLDR  210 (298)
Q Consensus       200 v~~~~~~~~~~  210 (298)
                      ..++.+.|...
T Consensus       158 Ls~f~~DPfd~  168 (1062)
T KOG1912|consen  158 LSCFRVDPFDS  168 (1062)
T ss_pred             eeeeeeCCCCc
Confidence            66788888764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=8.3e-09  Score=55.18  Aligned_cols=38  Identities=32%  Similarity=0.639  Sum_probs=35.8

Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      +++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.92  E-value=5.2e-06  Score=64.78  Aligned_cols=167  Identities=12%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeC---
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  123 (298)
                      +-+.|.||      -.||+||++|++.-.+.....|.|-|||.. +.+.+..+..|.-.-..+.+.||++.|+++..   
T Consensus        48 ~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~  121 (305)
T PF07433_consen   48 PGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE  121 (305)
T ss_pred             CCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence            34566666      469999999999977666678999999998 67888888888777888999999987777531   


Q ss_pred             ---------------CCeEEEEEeccCCCCccceeeeEE--e--eccCCceEEEEEccCCCEEEEeeCCCe-------EE
Q 037555          124 ---------------DRQFSVFAIQRTGTGEIDYQLIAR--Q--EAHKRIIWSCSWNPFGHEFATGSRDKT-------VK  177 (298)
Q Consensus       124 ---------------dg~i~iwd~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~  177 (298)
                                     +..+.+.|..+       +.++.+  +  ..|...|..+++.+++..++..-..|.       |-
T Consensus       122 Thpd~GR~kLNl~tM~psL~~ld~~s-------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva  194 (305)
T PF07433_consen  122 THPDSGRAKLNLDTMQPSLVYLDARS-------GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA  194 (305)
T ss_pred             cCcccCceecChhhcCCceEEEecCC-------CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence                           12333334333       333333  3  336678999999999877666654432       33


Q ss_pred             EEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeec
Q 037555          178 IWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVN  234 (298)
Q Consensus       178 ~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~  234 (298)
                      +++...  .+..+.    ........+-+|++++++     .++ +|+-..+.+.+||..++
T Consensus       195 ~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-----~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  195 LHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDG-----RLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             EEcCCC--cceeccCChHHHHhhCCceEEEEEeCCC-----CEEEEECCCCCEEEEEECCCC
Confidence            443322  222110    012345779999999988     455 45556788999999887

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=1.1e-05  Score=62.81  Aligned_cols=184  Identities=10%  Similarity=0.102  Sum_probs=114.6

Q ss_pred             eEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-----ccccEEEEEEcCCCCEEEEEeCC--------
Q 037555           59 LFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-----HSLTVTQIRFSHDDNLLLSVSRD--------  124 (298)
Q Consensus        59 v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------  124 (298)
                      ...+++. +++.++++.       .+.+.++|..+++....+..     .....+.+++.|+|++.++....        
T Consensus        42 ~~G~~~~~~~g~l~v~~-------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~  114 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVAD-------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP  114 (246)
T ss_dssp             EEEEEEECTTSEEEEEE-------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred             CceEEEEccCCEEEEEE-------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence            6677777 676666555       34456669888755433322     34678899999999987776544        


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcc-e---eeeeecCCCCCc
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSS-V---KQILALPPFNSS  199 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~-~---~~~~~~~~~~~~  199 (298)
                      |.|..++.. .       . .......-...+.++|+|+++.|+. -+..+.|..+++..... +   ..+..+......
T Consensus       115 g~v~~~~~~-~-------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~  185 (246)
T PF08450_consen  115 GSVYRIDPD-G-------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY  185 (246)
T ss_dssp             EEEEEEETT-S-------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE
T ss_pred             cceEEECCC-C-------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC
Confidence            445555554 1       1 1222222345689999999987764 46678899999864332 2   222233333334


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSR  278 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~  278 (298)
                      .-.+++..++     ++.++....+.|.+++.+ +             +.+..+. +  ....+++++|. ++..     
T Consensus       186 pDG~~vD~~G-----~l~va~~~~~~I~~~~p~-G-------------~~~~~i~-~--p~~~~t~~~fgg~~~~-----  238 (246)
T PF08450_consen  186 PDGLAVDSDG-----NLWVADWGGGRIVVFDPD-G-------------KLLREIE-L--PVPRPTNCAFGGPDGK-----  238 (246)
T ss_dssp             EEEEEEBTTS------EEEEEETTTEEEEEETT-S-------------CEEEEEE----SSSSEEEEEEESTTSS-----
T ss_pred             CCcceEcCCC-----CEEEEEcCCCEEEEECCC-c-------------cEEEEEc-C--CCCCEEEEEEECCCCC-----
Confidence            7789999988     677777778999999977 4             4444443 2  23478999995 4442     


Q ss_pred             ceEEEeee
Q 037555          279 TMQLASCG  286 (298)
Q Consensus       279 ~~~l~s~~  286 (298)
                       .+++|.+
T Consensus       239 -~L~vTta  245 (246)
T PF08450_consen  239 -TLYVTTA  245 (246)
T ss_dssp             -EEEEEEB
T ss_pred             -EEEEEeC
Confidence             5666653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=2.5e-06  Score=64.71  Aligned_cols=165  Identities=17%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-------ccccEEEEEEcCC------CCEEEEEeCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-------HSLTVTQIRFSHD------DNLLLSVSRDR  125 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~dg  125 (298)
                      -.-++||||+.+||.+     ...|+|+++|+... .+..+..       -...|..+.|.+-      ...|++...+|
T Consensus        46 WRkl~WSpD~tlLa~a-----~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G  119 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYA-----ESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG  119 (282)
T ss_pred             heEEEECCCCcEEEEE-----cCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence            5689999999999999     55899999999743 3322221       2356677777552      12577777888


Q ss_pred             eEEEEEeccCCCCccceeeeE--Eee-ccCCceEEEEEccCCCEEEEeeC----CC-------eEEEEEccCCccee---
Q 037555          126 QFSVFAIQRTGTGEIDYQLIA--RQE-AHKRIIWSCSWNPFGHEFATGSR----DK-------TVKIWAVENKSSVK---  188 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~wd~~~~~~~~---  188 (298)
                      .++=|-+..+....  .....  .+. .+...|.++.++|..++|++|+.    ++       -+..|.+-+..+-.   
T Consensus       120 ~L~Sy~vs~gt~q~--y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v  197 (282)
T PF15492_consen  120 QLRSYLVSVGTNQG--YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV  197 (282)
T ss_pred             eeeeEEEEcccCCc--ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence            88888764322111  22222  222 24678999999999998888763    11       25667654422110   


Q ss_pred             -----------------eeee------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          189 -----------------QILA------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       189 -----------------~~~~------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                                       .+..      ....+..|..|..+|++     .+|++...+|.|.+|++.+-+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-----~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-----SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-----CEEEEEEcCCeEEEEecCcchh
Confidence                             0000      01235678899999999     8999999999999999987643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=1.3e-06  Score=70.56  Aligned_cols=144  Identities=13%  Similarity=0.140  Sum_probs=113.7

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC-eEEEEEeccCCCCccceeee
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-QFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~  145 (298)
                      +|.+++..+      .|+..|.+...+-.++ + +|...|.-..+..+++-++.|..|| .+-++|.+.        ..+
T Consensus       331 ~Gd~ia~VS------RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--------~e~  394 (668)
T COG4946         331 NGDYIALVS------RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--------GEV  394 (668)
T ss_pred             CCcEEEEEe------cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--------ceE
Confidence            577888886      4778887766444333 2 3677788888888888899999999 899999985        234


Q ss_pred             EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC-
Q 037555          146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG-  224 (298)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg-  224 (298)
                      +.+...-+.|.++..+|+|.+++++.....|.+.|+.+++...   .-+...+-|+.+.|+|++     .+++-+-.+| 
T Consensus       395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~ns-----r~iAYafP~gy  466 (668)
T COG4946         395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNS-----RWIAYAFPEGY  466 (668)
T ss_pred             EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcCCc-----eeEEEecCcce
Confidence            5556667889999999999999999988999999999988654   223355779999999999     7999887665 


Q ss_pred             ---cEEEEEeeec
Q 037555          225 ---VIELWSISVN  234 (298)
Q Consensus       225 ---~i~vwd~~~~  234 (298)
                         .|+++|+..+
T Consensus       467 ~tq~Iklydm~~~  479 (668)
T COG4946         467 YTQSIKLYDMDGG  479 (668)
T ss_pred             eeeeEEEEecCCC
Confidence               6899999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=7.6e-08  Score=76.91  Aligned_cols=215  Identities=13%  Similarity=0.074  Sum_probs=144.2

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--c-eeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--W-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV  129 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  129 (298)
                      -|.+.|+.+... -.+++.+++.     ||.++.|.-..  + +.+..+..|-..|.+++.+-++.++.+.+. |..+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASl-----DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASL-----DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             cccceeeeEeee-hhheEEeeec-----chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            478888877655 3568888854     99999998643  2 345567789999999999999999999887 999999


Q ss_pred             EEeccCCCCccceeeeE--EeeccCCceEEEEEccCC--CEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          130 FAIQRTGTGEIDYQLIA--RQEAHKRIIWSCSWNPFG--HEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~--~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      +|+..-.       .+.  .+....+.+.. ..+|..  ..+++. ..++.+.++|-....+.... .-.-|..+|..+.
T Consensus        81 fDvEn~D-------minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-fkklH~sPV~~i~  151 (558)
T KOG0882|consen   81 FDVENFD-------MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-FKKLHFSPVKKIR  151 (558)
T ss_pred             EEeeccc-------hhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-ecccccCceEEEE
Confidence            9998732       221  12222222221 112211  133333 46799999998766543322 2335889999999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecc-cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR-TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      +.+.+     ..+++....|.|.-|...... .+..  .-.-..+....+..+..-.....++.|+|++       ..+.
T Consensus       152 y~qa~-----Ds~vSiD~~gmVEyWs~e~~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------~qis  217 (558)
T KOG0882|consen  152 YNQAG-----DSAVSIDISGMVEYWSAEGPFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------AQIS  217 (558)
T ss_pred             eeccc-----cceeeccccceeEeecCCCcccCccc--cccccccccchhhcccccccCccceEEcccc-------Cccc
Confidence            99998     788888889999999887311 0000  0000111112222233456678899999999       8999


Q ss_pred             eeeCCCcEEEeEec
Q 037555          284 SCGADNTVRVFQVN  297 (298)
Q Consensus       284 s~~~d~~i~iw~~~  297 (298)
                      +-+.|..|+++++.
T Consensus       218 tl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFK  231 (558)
T ss_pred             ccCcccEEEEEEec
Confidence            99999999998864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.2e-06  Score=72.14  Aligned_cols=78  Identities=12%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCC------CceEEEEEEcCCceeeeccccc--cccE-EEEEEcCCCCEEEEEeCCC
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQST------AAAEIWLWEVGSWKAMGRLQSH--SLTV-TQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~------~d~~i~vw~~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~l~~~~~dg  125 (298)
                      |. .|.-+.|||+.++|++-+.....      +...+.|||+.+|...+.|...  ...+ .-+.||.|++++|--.. .
T Consensus       249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~  326 (698)
T KOG2314|consen  249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-N  326 (698)
T ss_pred             CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-c
Confidence            44 48899999999999998764322      3368999999999988887652  2222 34689999999887765 4


Q ss_pred             eEEEEEecc
Q 037555          126 QFSVFAIQR  134 (298)
Q Consensus       126 ~i~iwd~~~  134 (298)
                      .|.||+...
T Consensus       327 sisIyEtps  335 (698)
T KOG2314|consen  327 SISIYETPS  335 (698)
T ss_pred             eEEEEecCc
Confidence            677887654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.83  E-value=2e-05  Score=61.46  Aligned_cols=196  Identities=11%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             EEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc-CCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           61 SLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        61 ~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      ++.|.+ ++.++++-     ...+.|..|+..+++... +....  ...+++. +++ .++.+...+. .++|+.+..  
T Consensus         4 gp~~d~~~g~l~~~D-----~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~--   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVD-----IPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGK--   71 (246)
T ss_dssp             EEEEETTTTEEEEEE-----TTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTCE-EEEETTTTE--
T ss_pred             ceEEECCCCEEEEEE-----cCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCce-EEEecCCCc--
Confidence            578888 56666665     457899999998776533 22122  6677777 564 5555555444 555876632  


Q ss_pred             ccceeeeEEee--c-cCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          139 EIDYQLIARQE--A-HKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       139 ~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                         ...+....  . .....+.+++.|+|++.++....        |.|..++.. ++...   .. ..-...+.++|+|
T Consensus        72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---~~-~~~~~pNGi~~s~  143 (246)
T PF08450_consen   72 ---VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---VA-DGLGFPNGIAFSP  143 (246)
T ss_dssp             ---EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE---EE-EEESSEEEEEEET
T ss_pred             ---EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE---Ee-cCcccccceEECC
Confidence               23333332  1 34567899999999977776543        456666666 33322   11 1234568999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ++.    .++++-+..+.|..+++.......         .....+..+.......-.+++..++       ++.++.-.
T Consensus       144 dg~----~lyv~ds~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~g~pDG~~vD~~G-------~l~va~~~  203 (246)
T PF08450_consen  144 DGK----TLYVADSFNGRIWRFDLDADGGEL---------SNRRVFIDFPGGPGYPDGLAVDSDG-------NLWVADWG  203 (246)
T ss_dssp             TSS----EEEEEETTTTEEEEEEEETTTCCE---------EEEEEEEE-SSSSCEEEEEEEBTTS--------EEEEEET
T ss_pred             cch----heeecccccceeEEEeccccccce---------eeeeeEEEcCCCCcCCCcceEcCCC-------CEEEEEcC
Confidence            983    344566678889999987542100         1112222222233457889999988       77777767


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                      .+.|.+++.
T Consensus       204 ~~~I~~~~p  212 (246)
T PF08450_consen  204 GGRIVVFDP  212 (246)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEECC
Confidence            788888763

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-07  Score=71.44  Aligned_cols=83  Identities=11%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCe
Q 037555           49 SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQ  126 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  126 (298)
                      ...+.+|...|..++|+|... ++..++     -+..|+|.|+++...+..+..+ ..+++++|.-|. ++|..|-..|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeec-----cCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            345567888899999999877 566664     3889999999999888888877 789999998855 57888888999


Q ss_pred             EEEEEeccCCC
Q 037555          127 FSVFAIQRTGT  137 (298)
Q Consensus       127 i~iwd~~~~~~  137 (298)
                      |.+||++.+..
T Consensus       260 VlvyD~R~~~~  270 (463)
T KOG1645|consen  260 VLVYDMRQPEG  270 (463)
T ss_pred             EEEEEccCCCc
Confidence            99999998654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.77  E-value=3.7e-06  Score=68.54  Aligned_cols=198  Identities=11%  Similarity=0.179  Sum_probs=129.9

Q ss_pred             CceEEEEEcCC--CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-----------C
Q 037555           57 NELFSLCCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-----------R  123 (298)
Q Consensus        57 ~~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~  123 (298)
                      ..|....|+|.  +..||.-..+......++++|.+..+..+.+..-....=..+.|.+.|++++.--           .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            56888889985  3445554333345688999999987666554333333335688999888665421           1


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      ...+.+++++...        +.....-.++|...+|.|.++.|++.+  .+-.+.++|++.. ...   .+  .+..-.
T Consensus       254 esnLyl~~~~e~~--------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~---~~--Pe~~rN  319 (561)
T COG5354         254 ESNLYLLRITERS--------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF---YF--PEQKRN  319 (561)
T ss_pred             cceEEEEeecccc--------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE---ec--CCcccc
Confidence            2457777776421        222224578999999999998887766  5778999999875 222   22  344556


Q ss_pred             EEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          202 ALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .+.|+|.+     .+++.++-   .|.|-+||.....            .+...+.     .....-+.|+|++      
T Consensus       320 T~~fsp~~-----r~il~agF~nl~gni~i~~~~~rf------------~~~~~~~-----~~n~s~~~wspd~------  371 (561)
T COG5354         320 TIFFSPHE-----RYILFAGFDNLQGNIEIFDPAGRF------------KVAGAFN-----GLNTSYCDWSPDG------  371 (561)
T ss_pred             cccccCcc-----cEEEEecCCccccceEEeccCCce------------EEEEEee-----cCCceEeeccCCc------
Confidence            78999998     57776554   4789999987541            2222321     2334557899999      


Q ss_pred             ceEEEeee------CCCcEEEeEec
Q 037555          279 TMQLASCG------ADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~------~d~~i~iw~~~  297 (298)
                       .++.+..      .|..|+|||+.
T Consensus       372 -qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         372 -QFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             -eEEEecCCCcccccCcceEEEEec
Confidence             6766553      37889999974

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=4.1e-07  Score=77.83  Aligned_cols=149  Identities=15%  Similarity=0.224  Sum_probs=107.4

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ..+.++|++++  +++|+-|     +-+|.|++++.+ +.. .+...|...      ..+|.++++|+.||.|.|..+-+
T Consensus        38 ~~D~is~~av~--~~~~~~G-----tH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALG-----THRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             hhhHHHHHHhh--cceeeec-----cccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccC
Confidence            34567788876  6789999     458999999986 444 333335444      56899999999999999998876


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccC-----CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPF-----GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ..       ....+ ....++.+++++|+     .+.+++|+..| +.++.-+-....... .+....++|.++.|..  
T Consensus       103 ~~-------~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g--  170 (846)
T KOG2066|consen  103 DD-------EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG--  170 (846)
T ss_pred             Cc-------cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC--
Confidence            32       23333 24578999999997     46899999888 776654322222211 3455678999999987  


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                           +++|=++.+| |+|||+.+.+.
T Consensus       171 -----~lIAWand~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  171 -----NLIAWANDDG-VKVYDTPTRQR  191 (846)
T ss_pred             -----cEEEEecCCC-cEEEeccccce
Confidence                 6788888777 99999987743

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=5.8e-07  Score=76.79  Aligned_cols=108  Identities=17%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCc
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGE  139 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~  139 (298)
                      ++|.|     ...|+|.++|+.++.....+..|+..|.++.|..... |++.+.          -+.+.+-|++++..  
T Consensus       439 LvAvG-----T~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGls--  510 (1062)
T KOG1912|consen  439 LVAVG-----TNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLS--  510 (1062)
T ss_pred             eEEee-----cCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccc--
Confidence            46666     6799999999999998899999999999999976544 333322          24566778887542  


Q ss_pred             cceeeeEE-eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee
Q 037555          140 IDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       140 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                         +..+. .+..+.+|..+..+..+++++....+.-+.+||+++...++
T Consensus       511 ---k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr  557 (1062)
T KOG1912|consen  511 ---KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR  557 (1062)
T ss_pred             ---cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence               22222 23456799999999999999999999999999998755443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.76  E-value=1.2e-05  Score=62.71  Aligned_cols=201  Identities=14%  Similarity=0.139  Sum_probs=126.5

Q ss_pred             eEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccE--EEEEEcCCCCEEEEEeC-----CCeEEEE
Q 037555           59 LFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV--TQIRFSHDDNLLLSVSR-----DRQFSVF  130 (298)
Q Consensus        59 v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iw  130 (298)
                      ...++.+|... .++.+-+    ......+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-||
T Consensus         7 gH~~a~~p~~~~avafaRR----PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARR----PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ccceeeCCCCCeEEEEEeC----CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            44677888544 4444432    34578899999998876665322221  23679999999998643     5899999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------------------CCeEEEEEccCCcceeeeee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------------------DKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~~~~  192 (298)
                      |....      ...+.++..+.-.-..+.+.|++..|+++-.                  +..+...|..+++.+... .
T Consensus        83 d~~~~------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~-~  155 (305)
T PF07433_consen   83 DAARG------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV-E  155 (305)
T ss_pred             ECcCC------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee-e
Confidence            99832      6667777777666678889999987777632                  123455566666655533 3


Q ss_pred             c--CCCCCceEEEEEeeccccCCccEEEEeec-CC-------cEEEEEeeecccccccCCCCCCcceeeeec----cCCc
Q 037555          193 L--PPFNSSVTALSWVGLDRQKNHGFLAVGME-SG-------VIELWSISVNRTNDVSTPAPSTANIIIRFD----PFAC  258 (298)
Q Consensus       193 ~--~~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  258 (298)
                      +  ..|+..|+.+++.+++      .++.+.+ .|       -|-+++...               .+..+.    ....
T Consensus       156 Lp~~~~~lSiRHLa~~~~G------~V~~a~Q~qg~~~~~~PLva~~~~g~---------------~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDG------TVAFAMQYQGDPGDAPPLVALHRRGG---------------ALRLLPAPEEQWRR  214 (305)
T ss_pred             cCccccccceeeEEecCCC------cEEEEEecCCCCCccCCeEEEEcCCC---------------cceeccCChHHHHh
Confidence            4  3366789999999987      3444432 22       122222211               011110    0122


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      -..-|-+|++++++.      ...+|+-.-+.+.+||..
T Consensus       215 l~~Y~gSIa~~~~g~------~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  215 LNGYIGSIAADRDGR------LIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             hCCceEEEEEeCCCC------EEEEECCCCCEEEEEECC
Confidence            346788999999982      344666688899999854

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.75  E-value=3.2e-07  Score=79.55  Aligned_cols=152  Identities=14%  Similarity=0.230  Sum_probs=113.4

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---------CCeEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---------DRQFS  128 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~  128 (298)
                      .|+-+..  +++.+.+|     ...|+|.+-|..+.+.++++.+|++.|.++..  .|++|++|+.         |..|+
T Consensus       179 ~v~imR~--Nnr~lf~G-----~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCG-----DTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             ceEEEEe--cCcEEEee-----cccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence            3444443  57888888     56899999999999999999999999987665  6899999975         45689


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEe
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      |||++.       .+.+..+.-+.++ .-+.|+|. ...+++++..|...+-|..+. .+...+..+......+..+.++
T Consensus       250 VYDLRm-------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS  321 (1118)
T KOG1275|consen  250 VYDLRM-------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS  321 (1118)
T ss_pred             hhhhhh-------hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence            999997       4444444434333 55778884 467888899999999884322 2212222334455669999999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEe
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +.+     +.++.|..+|.|.+|.-
T Consensus       322 sn~-----~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  322 SNG-----DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCC-----ceEEEecccCcEeeecC
Confidence            998     89999999999999973

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=1.1e-07  Score=80.41  Aligned_cols=165  Identities=13%  Similarity=0.212  Sum_probs=123.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK  174 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (298)
                      .....++.|+.+..+++.|+.||.+++..+.+......        ....-+.+.+|+..|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            34678999999999999999999999999876543211        1223457789999999999999999999999999


Q ss_pred             eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555          175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD  254 (298)
Q Consensus       175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
                      .|.+|-+-.+.-...+.. ...++.|.+++|..+|     ..+.....||.|.|=.+...+--            -+.  
T Consensus        94 lIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG-----~kIcIvYeDGavIVGsvdGNRIw------------gKe--  153 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDG-----TKICIVYEDGAVIVGSVDGNRIW------------GKE--  153 (1189)
T ss_pred             eEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCC-----cEEEEEEccCCEEEEeeccceec------------chh--
Confidence            999999877765543322 2356789999999999     78888889998887766543210            001  


Q ss_pred             cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       ++  ......+.|++|.       ..++.+-.+|.+.++|.+
T Consensus       154 -Lk--g~~l~hv~ws~D~-------~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  154 -LK--GQLLAHVLWSEDL-------EQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             -cc--hheccceeecccH-------HHHHhhhcCCcEEEeccc
Confidence             11  1233468899998       677777778888888753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=3.9e-06  Score=72.10  Aligned_cols=164  Identities=16%  Similarity=0.215  Sum_probs=115.2

Q ss_pred             ceEEeccCCCceEEEEEcCC-------------CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQ-------------GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD  114 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (298)
                      ....|..|.+.|.-..+.-+             |.++++|+     .||+|.|-.+.+.+...++. ...++.+++++|+
T Consensus        50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS-----~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd  123 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCS-----DDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPD  123 (846)
T ss_pred             ceeeeccccceEEEEecCCcccccccccccccCCceEEEec-----CCCcEEEeeccCCccceeEe-cCCcceeEEeccc
Confidence            34555667777666655444             99999994     59999999998887766665 5678999999997


Q ss_pred             -----CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee
Q 037555          115 -----DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       115 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  189 (298)
                           .+.+++|+..| +.++.-+--+.     +....+....++|.++.|.  |+++|-++.+| |++||+...+.+..
T Consensus       124 ~~~~~sk~fv~GG~ag-lvL~er~wlgn-----k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~  194 (846)
T KOG2066|consen  124 FSRQQSKQFVSGGMAG-LVLSERNWLGN-----KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN  194 (846)
T ss_pred             hhhhhhhheeecCcce-EEEehhhhhcC-----ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec
Confidence                 45899999988 77776443221     1111345567899999997  88999999888 89999998776652


Q ss_pred             eeecC---CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          190 ILALP---PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       190 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +..-.   ........+.|.+..      .|+.|-. .+|+|..++.
T Consensus       195 i~~p~~~~R~e~fpphl~W~~~~------~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  195 IPPPSQSVRPELFPPHLHWQDED------RLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             cCCCCCCCCcccCCCceEecCCC------eEEEecC-CeEEEEEEec
Confidence            21111   011124567888765      5777654 4688888883

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=3e-06  Score=73.31  Aligned_cols=198  Identities=14%  Similarity=0.179  Sum_probs=125.1

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCC
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTG  136 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  136 (298)
                      +|++.+..++.|     +.+|.|.+.+-. .+.+..++.+... |..+....+.++|++.+.|+     .+++|+++...
T Consensus        30 c~~s~~~~vvig-----t~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSSSTGSVVIG-----TADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcCCCceEEEe-----eccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            456778889999     458888877743 4555778877777 55554444446888877654     58999998764


Q ss_pred             CCccceeee--EEeec-----cCCceEEEEEccCCCEEEEeeCCCeEEEEEcc--CCcceeeeeecCCCCCceEEEEEee
Q 037555          137 TGEIDYQLI--ARQEA-----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE--NKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       137 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .... ..++  ..+.+     ...++.+++.+.+-..+|.|-.+|.|..+.-+  ..+..+.. .......+|+.+++..
T Consensus       104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRS  181 (933)
T ss_pred             CCCC-cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEec
Confidence            3221 1112  11111     35678899999999999999999999988432  11212211 2234578999999998


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ++.    ..+++++ ...|.+|.+...             .+  ....+..|+..+++-.+++..       ..++.++.
T Consensus       182 d~~----s~lFv~T-t~~V~~y~l~gr-------------~p--~~~~ld~~G~~lnCss~~~~t-------~qfIca~~  234 (933)
T KOG2114|consen  182 DGK----SVLFVAT-TEQVMLYSLSGR-------------TP--SLKVLDNNGISLNCSSFSDGT-------YQFICAGS  234 (933)
T ss_pred             CCc----eeEEEEe-cceeEEEEecCC-------------Cc--ceeeeccCCccceeeecCCCC-------ccEEEecC
Confidence            873    3233333 456999998843             11  111134577788888888766       44444443


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                       ..|.+|+.
T Consensus       235 -e~l~fY~s  242 (933)
T KOG2114|consen  235 -EFLYFYDS  242 (933)
T ss_pred             -ceEEEEcC
Confidence             34666653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=7e-07  Score=77.11  Aligned_cols=115  Identities=11%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      -+-..|+|..+++|+++... ...|.|.||- ++|++...+. ..-.+++++|+|..-.|+.+-.-|.+.+|....    
T Consensus        18 sti~SWHPsePlfAVA~fS~-er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~----   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSP-ERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT----   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecC-CCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC----
Confidence            34567999999999887643 3467888875 4576654443 334467799999988899998899999999876    


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  183 (298)
                         .+.-.....|..+|..+.|+++|+.++++..-|.|.+|....
T Consensus        91 ---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   91 ---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence               334445567999999999999999999999999999998873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.70  E-value=3.6e-06  Score=78.18  Aligned_cols=166  Identities=11%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             eEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccc---------cc------cccEEEEEEcCCCC-EEEEE
Q 037555           59 LFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ---------SH------SLTVTQIRFSHDDN-LLLSV  121 (298)
Q Consensus        59 v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~---------~~------~~~v~~~~~~~~~~-~l~~~  121 (298)
                      ...++++|+ +.++++.     ..++.|++||..++... .+.         ++      -.....++++|+++ ++++-
T Consensus       685 P~gVa~dp~~g~LyVad-----~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD  758 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAM-----AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD  758 (1057)
T ss_pred             CeEEEEecCCCeEEEEE-----CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence            457899995 4455554     34789999998766432 111         11      12346799999988 45555


Q ss_pred             eCCCeEEEEEeccCCCCccc------eeeeEEeec--------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555          122 SRDRQFSVFAIQRTGTGEID------YQLIARQEA--------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV  187 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  187 (298)
                      +.++.|++||+.........      ......+..        .-.....++++++++.+++-+.+++|++||..++...
T Consensus       759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            66799999998753210000      000000000        0112357899999998888888999999999876543


Q ss_pred             eeeee----------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          188 KQILA----------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       188 ~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      .....          ..+.-.....+++++++     .++++-+.++.|++||+.+..
T Consensus       839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-----~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENG-----RLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEeccCCcCCCCCcccccccCCceEEEEeCCC-----CEEEEECCCCEEEEEECCCCc
Confidence            21100          01112356789999988     688888889999999998764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=1e-05  Score=66.84  Aligned_cols=255  Identities=15%  Similarity=0.177  Sum_probs=152.8

Q ss_pred             ccceeeeecCcccccccCCCCC--ce-eeeccCCCcccccccCC-----C--CceEEecc---CCCceEEEEEcCCCCEE
Q 037555            5 TRETVERHGNDGLDTLESVPDA--VP-AVFTEPPIEDQLAWHTL-----W--PESHKLYG---HGNELFSLCCDHQGKLV   71 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~-----~--~~~~~~~~---h~~~v~~~~~s~~~~~l   71 (298)
                      .+..++..+|.....+....+.  +. ...++ -+++.++....     +  +...-+.+   .-..|....|+|.+.+|
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            3556777888887777764332  22 22222 33333333321     1  11111111   23568889999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~  141 (298)
                      |.-..+....-..+.+..+.+++.+++...|.-.=..+-|-.+|.+|+.--          .-..+-|+.++...     
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----  436 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----  436 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----
Confidence            987654434455788888888888777665544334566777787776521          11234455555421     


Q ss_pred             eeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccC-CcceeeeeecCCCCCceEEEEEeeccccCCccEE
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL  217 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  217 (298)
                        .......-...|...+|-|.|+.|++-+.   ..++.+|-+++ ......+..+.  ....+.+.|+|.|     .++
T Consensus       437 --Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-----~fv  507 (698)
T KOG2314|consen  437 --IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-----RFV  507 (698)
T ss_pred             --CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-----cEE
Confidence              11112234567889999999998887764   35688998873 33333222333  2557889999999     677


Q ss_pred             EEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC------
Q 037555          218 AVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD------  288 (298)
Q Consensus       218 ~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d------  288 (298)
                      +.+.   ..|.+.++|+.....           +.+.    ...| ...+.+.|.|.|       ++++|++.-      
T Consensus       508 vva~l~s~~g~l~F~D~~~a~~-----------k~~~----~~eh-~~at~veWDPtG-------RYvvT~ss~wrhk~d  564 (698)
T KOG2314|consen  508 VVAALVSRRGDLEFYDTDYADL-----------KDTA----SPEH-FAATEVEWDPTG-------RYVVTSSSSWRHKVD  564 (698)
T ss_pred             EEEEecccccceEEEecchhhh-----------hhcc----Cccc-cccccceECCCC-------CEEEEeeehhhhccc
Confidence            7654   468899999874211           1111    1112 345778999999       899999864      


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      .--+||+++
T Consensus       565 ~GYri~tfq  573 (698)
T KOG2314|consen  565 NGYRIFTFQ  573 (698)
T ss_pred             cceEEEEee
Confidence            334566553

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.69  E-value=4e-06  Score=75.21  Aligned_cols=207  Identities=15%  Similarity=0.167  Sum_probs=129.4

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ..+.|.++.|..++..++.+     .+.|.|.+-|.++..... ...-...|.+++|+||+..++..+..+++.+.+-.-
T Consensus        67 gd~~i~s~~fl~d~~~i~v~-----~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVI-----TALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CCcceEEEEEecccceEEEE-----ecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            34689999999988877777     458889888887654322 223456899999999999999999888887765421


Q ss_pred             CC----CC--------c-c---ceeeeEEeec---------------------cCCceEEEEEccCCCEEEEee-----C
Q 037555          135 TG----TG--------E-I---DYQLIARQEA---------------------HKRIIWSCSWNPFGHEFATGS-----R  172 (298)
Q Consensus       135 ~~----~~--------~-~---~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~  172 (298)
                      ..    ..        . .   -++....+.+                     ..+.=+.+.|--||.++++..     .
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence            00    00        0 0   0000001110                     111224588999999998843     3


Q ss_pred             CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcce
Q 037555          173 DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       173 dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                      ...|++||.+ +..-.   .-......-.+++|-|.|     ..+++-.   .|+.|.+|..+.-+..            
T Consensus       221 ~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsg-----s~iA~iq~~~sd~~IvffErNGL~hg------------  279 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSG-----SLIAAIQCKTSDSDIVFFERNGLRHG------------  279 (1265)
T ss_pred             ceeEEEeccc-chhhc---ccCcccccccceeecCCC-----CeEeeeeecCCCCcEEEEecCCcccc------------
Confidence            3789999987 32211   111223344689999988     6777643   3567888875533211            


Q ss_pred             eeeeccCCcccceEEEEEeecCCCCCCCcceEEEe---eeCCCcEEEeEe
Q 037555          250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS---CGADNTVRVFQV  296 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw~~  296 (298)
                      ...+. +......|..++|+.++       ..|+.   +.....|++|-+
T Consensus       280 ~f~l~-~p~de~~ve~L~Wns~s-------diLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  280 EFVLP-FPLDEKEVEELAWNSNS-------DILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             ccccC-CcccccchheeeecCCC-------CceeeeecccccceEEEEEe
Confidence            01111 22233449999999998       78887   555566999964

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.67  E-value=7.9e-07  Score=73.89  Aligned_cols=113  Identities=11%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      +....|.+++++|+...|+.|+.||.|.+||...+....     ....-.++.++|+|++     .++++|+..|.+.+|
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-----~ka~~~P~~iaWHp~g-----ai~~V~s~qGelQ~F  326 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-----AKAEFIPTLIAWHPDG-----AIFVVGSEQGELQCF  326 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-----eeecccceEEEEcCCC-----cEEEEEcCCceEEEE
Confidence            567889999999999999999999999999987654332     1234557899999999     799999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      |+--...................+..+-.+...+..+.|.+..
T Consensus       327 D~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  327 DMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             EeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence            9975532222111111113333444444567778889998543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.67  E-value=1.4e-05  Score=65.35  Aligned_cols=230  Identities=18%  Similarity=0.207  Sum_probs=141.1

Q ss_pred             CceeeeccCCCccccccc----------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC----------CCceEE
Q 037555           26 AVPAVFTEPPIEDQLAWH----------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS----------TAAAEI   85 (298)
Q Consensus        26 ~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~----------~~d~~i   85 (298)
                      ++..+.++ |.+..++..          ..|..+..+.  ...|.-+.|+|.+++|.+-+...-          ..+..+
T Consensus        34 p~~~~~~S-P~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          34 PVAYVSES-PLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             chhheeec-CcchheehhhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            44555555 555555444          2233333332  345899999999999998765321          223469


Q ss_pred             EEEEcCCceeeecccccccc--EE-EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           86 WLWEVGSWKAMGRLQSHSLT--VT-QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      .+||..++..+..+..-..+  .. -+.|+-+.++.+=. ....++|+++ +..-.   ..+...++  ...|....|+|
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~---~~p~~~lr--~~gi~dFsisP  183 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE---EHPFKNLR--PVGILDFSISP  183 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc---cCchhhcc--ccceeeEEecC
Confidence            99999999999888765554  44 67888888766544 3457889987 32211   11122222  35678888998


Q ss_pred             CC--CEEEE-----eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-----------cCC
Q 037555          163 FG--HEFAT-----GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-----------ESG  224 (298)
Q Consensus       163 ~~--~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-----------~dg  224 (298)
                      .+  ..|+.     ...++.+++|.+.....+... ++  .+..-..+.|.+.+     .+|+.-.           .+.
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~l--fk~~~~qLkW~~~g-----~~ll~l~~t~~ksnKsyfges  255 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NL--FKVSGVQLKWQVLG-----KYLLVLVMTHTKSNKSYFGES  255 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeee-ee--EeecccEEEEecCC-----ceEEEEEEEeeecccceeccc
Confidence            64  33443     345788999999866655432 22  22333568888877     4544321           134


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee--eCCCcEEEeEec
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC--GADNTVRVFQVN  297 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--~~d~~i~iw~~~  297 (298)
                      .++|++++...             +..    .....++|.+.+|.|.+       ..++++  -.+-.+.++|++
T Consensus       256 nLyl~~~~e~~-------------i~V----~~~~~~pVhdf~W~p~S-------~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         256 NLYLLRITERS-------------IPV----EKDLKDPVHDFTWEPLS-------SRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             eEEEEeecccc-------------cce----eccccccceeeeecccC-------CceeEEecccccceeecccc
Confidence            57777776321             111    11357899999999998       454444  467777777764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=3.1e-06  Score=70.44  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             EEEEEcc-CCCEEEEe----eCCCe----EEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          156 WSCSWNP-FGHEFATG----SRDKT----VKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       156 ~~~~~~~-~~~~l~~~----~~dg~----i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                      .++.|+- +.+.+.+.    +.+|.    -.+|++...+... .+..+ ..++.+.+.+++|+.     ..++.|+.||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-----~kLvlGC~DgS  282 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-----DKLVLGCEDGS  282 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-----ceEEEEecCCe
Confidence            5566775 34455443    23443    3456665443322 22233 477889999999998     79999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |.+||...+.               ..+   ....-.++.++|+|++       .++++|+..|.+.+||+.
T Consensus       283 iiLyD~~~~~---------------t~~---~ka~~~P~~iaWHp~g-------ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  283 IILYDTTRGV---------------TLL---AKAEFIPTLIAWHPDG-------AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEEcCCCe---------------eee---eeecccceEEEEcCCC-------cEEEEEcCCceEEEEEee
Confidence            9999987541               111   1234567889999999       899999999999999985

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=1.4e-05  Score=66.95  Aligned_cols=160  Identities=11%  Similarity=0.100  Sum_probs=94.6

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCC--e
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR--Q  126 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~  126 (298)
                      ..+....+......|+|||+.|+.....  ..+..|.++++.+++. ..+..+........|+|||+.|+-.+ ..+  .
T Consensus       226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~  302 (419)
T PRK04043        226 EKIASSQGMLVVSDVSKDGSKLLLTMAP--KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN  302 (419)
T ss_pred             EEEecCCCcEEeeEECCCCCEEEEEEcc--CCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCce
Confidence            3444455556778899999877765432  2367899999887764 33443443344568999998766655 344  4


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---------CeEEEEEccCCcceeeeeecCCCC
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---------KTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                      |.+.|+..+.       . ..+.....  ....|+|+|+.|+.....         ..|.+.|+.++.. .   .+... 
T Consensus       303 Iy~~dl~~g~-------~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~---~LT~~-  367 (419)
T PRK04043        303 IFMKKLNSGS-------V-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-R---RLTAN-  367 (419)
T ss_pred             EEEEECCCCC-------e-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-E---ECCCC-
Confidence            5555665422       1 11111111  124899999988877653         3688888877654 3   23222 


Q ss_pred             CceEEEEEeeccccCCccEEEEee-cCCc--EEEEEee
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSIS  232 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~  232 (298)
                      .......|+|++     ..|+... ..+.  |.+.++.
T Consensus       368 ~~~~~p~~SPDG-----~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        368 GVNQFPRFSSDG-----GSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCcCCeEECCCC-----CEEEEEEccCCcEEEEEEecC
Confidence            233468899998     4554444 3333  4455554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.2e-07  Score=72.31  Aligned_cols=176  Identities=11%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCC-C--CEEEEEeC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHD-D--NLLLSVSR  123 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~-~--~~l~~~~~  123 (298)
                      +..+..|-..|.+++.+.++.++++.+    ..|..++++|+++-..+..++.  ..+.+. +..++. .  .+.++.-.
T Consensus        46 VKhFraHL~~I~sl~~S~dg~L~~Sv~----d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   46 VKHFRAHLGVILSLAVSYDGWLFRSVE----DPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             hhhhHHHHHHHHhhhccccceeEeecc----CcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeeccc
Confidence            455677889999999999999999974    3489999999987665543331  222221 112221 1  23333456


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-Cccee-----------eee
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVK-----------QIL  191 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~-----------~~~  191 (298)
                      ++.+.++|-....     .+....-.-|..+|..+.++|.+..+++....|.|.-|.... .+.+.           .+.
T Consensus       121 sg~i~VvD~~~d~-----~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy  195 (558)
T KOG0882|consen  121 SGKIFVVDGFGDF-----CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY  195 (558)
T ss_pred             CCCcEEECCcCCc-----CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence            8899999976543     233344456899999999999999999999999999998873 11110           111


Q ss_pred             ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555          192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV  239 (298)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  239 (298)
                      .+........++.|+|++     ..+.+-+.|..|+++++++++..+.
T Consensus       196 ~f~K~Kt~pts~Efsp~g-----~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  196 GFPKAKTEPTSFEFSPDG-----AQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             cccccccCccceEEcccc-----CcccccCcccEEEEEEeccchhhhh
Confidence            233345678899999999     7888888999999999999865543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.62  E-value=1.5e-06  Score=73.54  Aligned_cols=145  Identities=12%  Similarity=0.206  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ...|.=-+++..+++++.|+     .-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.++.++.
T Consensus        33 ~~~v~lTc~dst~~~l~~Gs-----S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGS-----SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             cceEEEEEeecCCceEEEec-----ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            34444445566788999995     489999999876655432 223455566777888888999999999999999887


Q ss_pred             CCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEee
Q 037555          135 TGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .....  ...+... +.|...|++++|++++..+++|...|+|..-.+... ........+-...+.|..+....
T Consensus       108 ~~p~~--~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  108 ELPRD--LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             cCCCc--ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence            43322  1222222 237889999999999999999999999988877762 11111112223456777776665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.62  E-value=0.00011  Score=56.56  Aligned_cols=213  Identities=14%  Similarity=0.132  Sum_probs=114.7

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      +.+.+-...+..++|+|+...|++..    .+.+.|..++.+ |+.++.+.-. -+....+++..++.++++.-.++.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~----d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQ----DEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEE----TTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEE----CCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            45666677899999999866555554    568889888875 7777765422 34578899988887777766799999


Q ss_pred             EEEeccCCCCccceeeeEEe-----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC---Ccceeeee-----ecCC
Q 037555          129 VFAIQRTGTGEIDYQLIARQ-----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN---KSSVKQIL-----ALPP  195 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~-----~~~~  195 (298)
                      ++++........ ......+     ..++..+-.++|+|.++.|+++-...-..+|.++.   ........     ....
T Consensus        90 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            999854332111 1111111     13456789999999888887777666666776654   11111000     0112


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-c-----cceEEEEEee
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-H-----VAAVNRMAWK  269 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~  269 (298)
                      ....+.+++++|...    .+++....+..|..+|.. +             +....+.-..+ |     -...-.|+|.
T Consensus       169 ~~~d~S~l~~~p~t~----~lliLS~es~~l~~~d~~-G-------------~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTG----HLLILSDESRLLLELDRQ-G-------------RVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             -SS---EEEEETTTT----EEEEEETTTTEEEEE-TT----------------EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             eeccccceEEcCCCC----eEEEEECCCCeEEEECCC-C-------------CEEEEEEeCCcccCcccccCCccEEEEC
Confidence            334578899999763    677777788889888843 3             22222221111 1     1346789999


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      ++|       ++.++ ++-+..++|
T Consensus       231 ~~G-------~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  231 PDG-------NLYIV-SEPNLFYRF  247 (248)
T ss_dssp             TT---------EEEE-ETTTEEEEE
T ss_pred             CCC-------CEEEE-cCCceEEEe
Confidence            998       44444 455544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1e-06  Score=69.60  Aligned_cols=139  Identities=17%  Similarity=0.260  Sum_probs=93.5

Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF  163 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (298)
                      +++.+..+.+....+..+...|.+++|+|..+ ++..++.+..|+|.|+++       ...+..+..+ ..+++++|.-+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-------~~~vssy~a~-~~~wSC~wDld  246 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-------SCVVSSYIAY-NQIWSCCWDLD  246 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-------ceeeeheecc-CCceeeeeccC
Confidence            66666666666666677889999999999776 788999999999999997       5556666666 88999999975


Q ss_pred             C-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc-cCCccEEEEeecCCcEEEEEeee
Q 037555          164 G-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR-QKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       164 ~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      . ++++.|-..|.|.+||++..+.......-.....+|..++.-+-.. .+.+.+++....+  +..|++..
T Consensus       247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF  316 (463)
T ss_pred             CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence            4 6788888999999999997654331111111234454444333221 1112445444432  55666643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=8.5e-06  Score=70.75  Aligned_cols=71  Identities=13%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      +++++|+|..-.|+.|     -+-|.+.+|...+.+.-.....|+.+|..+.|+++|..++++..-|.+.+|....
T Consensus        62 atSLCWHpe~~vLa~g-----we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQG-----WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhc-----cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            5679999998888888     5689999999987766666667999999999999999999999999999998874

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.52  E-value=4.2e-08  Score=81.78  Aligned_cols=207  Identities=14%  Similarity=0.117  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCC--CEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEe----CCCeE
Q 037555           57 NELFSLCCDHQG--KLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVS----RDRQF  127 (298)
Q Consensus        57 ~~v~~~~~s~~~--~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i  127 (298)
                      ..+.|++++.+.  ..+++|     ..+|.|-+-.++...-  .....++..++++++|++ |.+.||+|-    .|..+
T Consensus        57 qy~kcva~~y~~d~cIlavG-----~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVG-----SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCceeehhhcCCchhhhhhc-----cccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence            456777776543  456666     3478898887754322  233556888999999998 556777763    35679


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .|||+.+.-..+........  .......+++|..+.+++.+|.....++++|++......   .. -....+..+...|
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---~s-vnTk~vqG~tVdp  205 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SS-VNTKYVQGITVDP  205 (783)
T ss_pred             cceecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---hh-hhhhhcccceecC
Confidence            99999875332211111111  123345588888888899999999999999999543322   11 1233566788888


Q ss_pred             ccccCCccEEEEeecCCcEEEEE-eeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          208 LDRQKNHGFLAVGMESGVIELWS-ISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      ...    +++++-. ||.|.+|| .++-+            .++..+. .-......+..++|.|..+      .+++++
T Consensus       206 ~~~----nY~cs~~-dg~iAiwD~~rnie------------npl~~i~~~~N~~~~~l~~~aycPtrt------glla~l  262 (783)
T KOG1008|consen  206 FSP----NYFCSNS-DGDIAIWDTYRNIE------------NPLQIILRNENKKPKQLFALAYCPTRT------GLLAVL  262 (783)
T ss_pred             CCC----Cceeccc-cCceeeccchhhhc------------cHHHHHhhCCCCcccceeeEEeccCCc------chhhhh
Confidence            543    6776655 99999999 44332            1111111 0011123588999999874      577777


Q ss_pred             eCC-CcEEEeEec
Q 037555          286 GAD-NTVRVFQVN  297 (298)
Q Consensus       286 ~~d-~~i~iw~~~  297 (298)
                      ..| ++|+++++.
T Consensus       263 ~RdS~tIrlydi~  275 (783)
T KOG1008|consen  263 SRDSITIRLYDIC  275 (783)
T ss_pred             ccCcceEEEeccc
Confidence            765 688888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=6.4e-05  Score=67.84  Aligned_cols=162  Identities=17%  Similarity=0.276  Sum_probs=99.4

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC----C-------------------ceeeecccccc--------
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG----S-------------------WKAMGRLQSHS--------  103 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~----~-------------------~~~~~~~~~~~--------  103 (298)
                      -.+.|.+++||||+..++...     ...++.+-.-.    .                   |+....|.+..        
T Consensus       108 vd~GI~aaswS~Dee~l~liT-----~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~  182 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALIT-----GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQK  182 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEe-----CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccc
Confidence            457899999999999988884     35566554321    0                   11111122111        


Q ss_pred             -------------ccEEEEEEcCCCCEEEEE-----eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555          104 -------------LTVTQIRFSHDDNLLLSV-----SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH  165 (298)
Q Consensus       104 -------------~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (298)
                                   +.=+.+.|--||.++++.     ..-+.|++||-+. .       +-..-....+.-.+++|-|.|.
T Consensus       183 ~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~-------Lns~se~~~~l~~~LsWkPsgs  254 (1265)
T KOG1920|consen  183 IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-A-------LNSTSEPVEGLQHSLSWKPSGS  254 (1265)
T ss_pred             ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-h-------hhcccCcccccccceeecCCCC
Confidence                         111358899999999884     2237999999762 1       1111122233446799999999


Q ss_pred             EEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE---eecCCcEEEEEeeec
Q 037555          166 EFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV---GMESGVIELWSISVN  234 (298)
Q Consensus       166 ~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~---g~~dg~i~vwd~~~~  234 (298)
                      .+++-.   .|+.|.++.-...+.-.....++.....+..++|+.++     ..|++   ......|++|-+.+.
T Consensus       255 ~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s-----diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  255 LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS-----DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC-----CceeeeecccccceEEEEEecCe
Confidence            988864   45678888654332221111233333448999999988     67777   444455999988764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.48  E-value=1.7e-06  Score=66.30  Aligned_cols=172  Identities=14%  Similarity=0.254  Sum_probs=112.9

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC------------CceEEEEEccCC--CEE
Q 037555          102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK------------RIIWSCSWNPFG--HEF  167 (298)
Q Consensus       102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l  167 (298)
                      ....|+++.|...|.++++|...|.|.+|.-.......  .+....++.|.            ..|..+.|..++  +.+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            34578999999999999999999999999866533111  22333344442            357788887644  567


Q ss_pred             EEeeCCCeEEEEEccCCcce----------------------e-----------------eee-ecCCCCCceEEEEEee
Q 037555          168 ATGSRDKTVKIWAVENKSSV----------------------K-----------------QIL-ALPPFNSSVTALSWVG  207 (298)
Q Consensus       168 ~~~~~dg~i~~wd~~~~~~~----------------------~-----------------~~~-~~~~~~~~v~~~~~~~  207 (298)
                      +..+.|.+|++|.+......                      .                 +.+ ....|...+.++.|..
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            77888999999988653100                      0                 000 0124556678888888


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      +.     +.++++ +|=.|.+|++.-....          -.+..+.+  +..-...|++..|+|...      +.+.-.
T Consensus       183 D~-----et~lSa-DdLrINLWnl~i~D~s----------FnIVDiKP~nmeeLteVItSaeFhp~~c------n~fmYS  240 (460)
T COG5170         183 DK-----ETLLSA-DDLRINLWNLEIIDGS----------FNIVDIKPHNMEELTEVITSAEFHPEMC------NVFMYS  240 (460)
T ss_pred             ch-----heeeec-cceeeeeccccccCCc----------eEEEeccCccHHHHHHHHhhcccCHhHc------ceEEEe
Confidence            76     566665 5778999998754211          11112111  111245689999999763      677888


Q ss_pred             eCCCcEEEeEec
Q 037555          286 GADNTVRVFQVN  297 (298)
Q Consensus       286 ~~d~~i~iw~~~  297 (298)
                      +..|.|++-|++
T Consensus       241 sSkG~Ikl~DlR  252 (460)
T COG5170         241 SSKGEIKLNDLR  252 (460)
T ss_pred             cCCCcEEehhhh
Confidence            889999998886

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.48  E-value=8e-08  Score=80.15  Aligned_cols=169  Identities=18%  Similarity=0.237  Sum_probs=113.9

Q ss_pred             EEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCc--eeeec--ccc-ccccEEEEEEcCCCCEEEEEeC
Q 037555           50 HKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSW--KAMGR--LQS-HSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      ....+|....++++|++- ...||+| .+....|..+.|||+.++  .+...  |.+ ......+++|..+.+++++|..
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             eecccccccccccccccccHHHHHhh-hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            344567889999999984 4556655 555456788999999876  33222  222 3445668899988889999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEE-ccCCcceeeeeecCC----CC
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWA-VENKSSVKQILALPP----FN  197 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~----~~  197 (298)
                      ...+.++|++...        .....-....+..+.+.| .++++++-. ||.|.+|| .+.-+...  ..+..    ..
T Consensus       175 sr~~~ifdlRqs~--------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl--~~i~~~~N~~~  243 (783)
T KOG1008|consen  175 SRSVHIFDLRQSL--------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL--QIILRNENKKP  243 (783)
T ss_pred             cchhhhhhhhhhh--------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH--HHHhhCCCCcc
Confidence            9999999998421        221122234566778888 777877766 89999999 44332211  12221    12


Q ss_pred             CceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeec
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVN  234 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~  234 (298)
                      ..+..++|+|...    ..+++... .+.|++|++...
T Consensus       244 ~~l~~~aycPtrt----glla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  244 KQLFALAYCPTRT----GLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             cceeeEEeccCCc----chhhhhccCcceEEEeccccc
Confidence            3489999999864    56666664 578999998754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.45  E-value=0.00023  Score=57.63  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=75.2

Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      ++|.+.|..+++.+.++.....+- .+ ++||++.|+++..          +..|.+||..+       .+.+..+.-..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-------~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-------HLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-------CcEEeEEccCC
Confidence            789999999999988877433333 34 9999998777654          78999999998       45555554321


Q ss_pred             -------CceEEEEEccCCCEEEEee-C-CCeEEEEEccCCcceeee
Q 037555          153 -------RIIWSCSWNPFGHEFATGS-R-DKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       153 -------~~v~~~~~~~~~~~l~~~~-~-dg~i~~wd~~~~~~~~~~  190 (298)
                             .....++++|+|++|++.. . +..|.+.|+.+++.+..+
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence                   1234788999999998766 3 789999999999888744

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.32  E-value=0.00016  Score=60.27  Aligned_cols=170  Identities=12%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CceEEEEEEcCCceeeeccccc-c------ccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSH-S------LTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~-~------~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      .++.+..+|..+++.+...... .      ..+..+.-+|  .+..++.++.+|.+..+|..++.       .+-... .
T Consensus       198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-------~~W~~~-~  269 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-------VLWKRD-A  269 (377)
T ss_pred             CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-------EEEeec-c
Confidence            4788999999888765432210 0      0000111111  34578888889999999987632       222211 1


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      .. .....  ..+..+++++.+|.|..+|..+++.+.....+.  .....+...  .+     ..+++++.+|.|+++|.
T Consensus       270 ~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g-----~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       270 SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPAV--VG-----GYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCEE--EC-----CEEEEEeCCCEEEEEEC
Confidence            11 11122  246788888899999999999887665221111  111122222  23     57888999999999998


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      .++             +.+..+.   .+...+..--...++        .|+.++.||.|..|
T Consensus       338 ~tG-------------~~~~~~~---~~~~~~~~sp~~~~~--------~l~v~~~dG~l~~~  376 (377)
T TIGR03300       338 EDG-------------SFVARLK---TDGSGIASPPVVVGD--------GLLVQTRDGDLYAF  376 (377)
T ss_pred             CCC-------------CEEEEEE---cCCCccccCCEEECC--------EEEEEeCCceEEEe
Confidence            877             4444433   122222221122233        57788889998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.32  E-value=8.4e-05  Score=65.94  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=93.8

Q ss_pred             CceEEEEEEcCCceeeecccccccc-EEEEEEcC-----CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSH-----DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI  154 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ....|+-.|++.|+.+..+..+... |..++=..     +....+.|-.+..+..||.+..+.... ....+.+ .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-~~~~k~Y-~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-DSQSKQY-SSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-ecccccc-ccCCC
Confidence            3578999999999999998876644 54443221     123456677788899999987542110 0011111 23345


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ..|++-..+| +||+|+.+|.||+||--. ..  ....+++...+|..|..+.+|     .+|++.+ +..|.+++..
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~--AKT~lp~lG~pI~~iDvt~DG-----kwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR--AKTALPGLGDPIIGIDVTADG-----KWILATC-KTYLLLIDTL  647 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeecccc-hh--hhhcCCCCCCCeeEEEecCCC-----cEEEEee-cceEEEEEEe
Confidence            6677666554 799999999999999433 22  223567788999999999999     5666655 4568888764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=1.7e-06  Score=75.28  Aligned_cols=125  Identities=15%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC
Q 037555           94 KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD  173 (298)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (298)
                      +..++|..|....+|++|+-+.++|+.|+..|.|++|++.+       +.......+|..+|+.+.-+.+|..+++.+.-
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-------ccccccccccccccccccccCCcceeeeeccc
Confidence            44566788899999999999999999999999999999998       44566678899999999999899887776543


Q ss_pred             C--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          174 K--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       174 g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      .  -..+|++.......  ..+.    .-.++.|+...     ..-+.|+......+||+.+...
T Consensus      1165 S~PlsaLW~~~s~~~~~--Hsf~----ed~~vkFsn~~-----q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPR--HSFD----EDKAVKFSNSL-----QFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred             cCchHHHhccccccCcc--cccc----ccceeehhhhH-----HHHHhcccccceEEEecccCcH
Confidence            3  46789987532221  1222    23567787765     4556666667789999998743

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.25  E-value=6.8e-05  Score=62.64  Aligned_cols=167  Identities=18%  Similarity=0.203  Sum_probs=99.9

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCc-eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCCeE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA-AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDRQF  127 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i  127 (298)
                      +.+..-...+..-+|+|+++.++......  .. ..+.++++++++....+. ..+.-..-+|+|||+.++- ...||..
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~--~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFEL--GGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEec--CCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCc
Confidence            34444556788889999999887775532  12 469999999887655443 3334456789999986654 4567766


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCe--EEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKT--VKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .||-++....      ....+....+.-..-.|+|+|+.++..++ .|.  |.++|.+......  .+.....  -..-.
T Consensus       263 ~iy~~dl~~~------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r--iT~~~~~--~~~p~  332 (425)
T COG0823         263 DIYLMDLDGK------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR--LTFSGGG--NSNPV  332 (425)
T ss_pred             cEEEEcCCCC------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE--eeccCCC--CcCcc
Confidence            5554443221      12223333333346789999998887764 444  6666666554422  1333222  22678


Q ss_pred             EeeccccCCccEEEEeec-CCc--EEEEEeeec
Q 037555          205 WVGLDRQKNHGFLAVGME-SGV--IELWSISVN  234 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~-dg~--i~vwd~~~~  234 (298)
                      |+|++     .+|+..+. +|.  |.+.++.++
T Consensus       333 ~SpdG-----~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         333 WSPDG-----DKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CCCCC-----CEEEEEeccCCceeeEEeccCCC
Confidence            88988     55555443 454  555555443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=0.00032  Score=54.31  Aligned_cols=140  Identities=11%  Similarity=-0.006  Sum_probs=85.5

Q ss_pred             ceEEEEEEcCCceeeeccccc--cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSH--SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ++.|..||..+++.+-....-  .....+. ..+++..+++++.++.|..||..+       ++.+-.... ...+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-------G~~~W~~~~-~~~~~~~~   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-------GKVLWRFDL-PGPISGAP   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-------SEEEEEEEC-SSCGGSGE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-------CCEEEEeec-ccccccee
Confidence            688999999999888766421  1112211 223566778888999999999877       344433332 22211111


Q ss_pred             EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                       ...+..+++++.++.|+.+|.++++.......... .............+     ..++.+..++.|..+|.++++.
T Consensus        73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~l~~~d~~tG~~  144 (238)
T PF13360_consen   73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-----DRLYVGTSSGKLVALDPKTGKL  144 (238)
T ss_dssp             -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-----TEEEEEETCSEEEEEETTTTEE
T ss_pred             -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-----CEEEEEeccCcEEEEecCCCcE
Confidence             22456777777888999999999988775312111 11112222333334     5778888789999999887754

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.24  E-value=0.00015  Score=56.18  Aligned_cols=183  Identities=9%  Similarity=0.043  Sum_probs=101.6

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ++..++++.     .++.|..||..+|+.+..+.. ...+.... ...+..++.++.++.+..+|..++       +.+-
T Consensus        35 ~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG-------~~~W  100 (238)
T PF13360_consen   35 DGGRVYVAS-----GDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTG-------KVLW  100 (238)
T ss_dssp             ETTEEEEEE-----TTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTS-------CEEE
T ss_pred             eCCEEEEEc-----CCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCc-------ceee
Confidence            445566553     389999999999988766553 11111111 224556777778889999997763       3333


Q ss_pred             Ee-ecc---CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC--Cce-------EEEEEeeccccCC
Q 037555          147 RQ-EAH---KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN--SSV-------TALSWVGLDRQKN  213 (298)
Q Consensus       147 ~~-~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~v-------~~~~~~~~~~~~~  213 (298)
                      .. ...   ............+..++++..++.|..+|.++++.+..... ....  ..+       ..+.+. .     
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-----  173 (238)
T PF13360_consen  101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-D-----  173 (238)
T ss_dssp             EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-T-----
T ss_pred             eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-C-----
Confidence            31 111   01112222333478888888899999999999988764432 2111  111       111222 1     


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       ..++.+..++.+.-+|+.++             +...... .    ..+..+ ...++       ..|+.++.++.|..
T Consensus       174 -~~v~~~~~~g~~~~~d~~tg-------------~~~w~~~-~----~~~~~~-~~~~~-------~~l~~~~~~~~l~~  226 (238)
T PF13360_consen  174 -GRVYVSSGDGRVVAVDLATG-------------EKLWSKP-I----SGIYSL-PSVDG-------GTLYVTSSDGRLYA  226 (238)
T ss_dssp             -TEEEEECCTSSEEEEETTTT-------------EEEEEEC-S----S-ECEC-EECCC-------TEEEEEETTTEEEE
T ss_pred             -CEEEEEcCCCeEEEEECCCC-------------CEEEEec-C----CCccCC-ceeeC-------CEEEEEeCCCEEEE
Confidence             25666666675333388776             3222111 1    112221 23444       56666668999999


Q ss_pred             eEec
Q 037555          294 FQVN  297 (298)
Q Consensus       294 w~~~  297 (298)
                      ||++
T Consensus       227 ~d~~  230 (238)
T PF13360_consen  227 LDLK  230 (238)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9975

...

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.0017  Score=52.84  Aligned_cols=183  Identities=14%  Similarity=0.186  Sum_probs=110.2

Q ss_pred             eEEEEEEcCCceeeecccc-ccccEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEeccCCCCccceee
Q 037555           83 AEIWLWEVGSWKAMGRLQS-HSLTVTQI---RFSHD----DNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQL  144 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~-~~~~v~~~---~~~~~----~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~  144 (298)
                      ..|++.|..+.+.+..+.- ....+.++   .+..+    ..+|++|+.          .|.|.++++..........+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588899888777665432 22334443   34332    357776653          289999999874111111333


Q ss_pred             eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555          145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG  224 (298)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg  224 (298)
                      +... ...++|++++-- .+ +|+++. .+.|.+|++...+.+....... ....+.++....       ++++.|....
T Consensus        82 i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~-------~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFK-------NYILVGDAMK  149 (321)
T ss_dssp             EEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET-------TEEEEEESSS
T ss_pred             EEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEeccc-------cEEEEEEccc
Confidence            3333 357889988766 34 455544 4889999998877333332332 334566666553       6899999888


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+.++.++...            ..+..+.. ......++++.|-+++       ..++.+..+|.+.++..+
T Consensus       150 sv~~~~~~~~~------------~~l~~va~-d~~~~~v~~~~~l~d~-------~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  150 SVSLLRYDEEN------------NKLILVAR-DYQPRWVTAAEFLVDE-------DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEETTT------------E-EEEEEE-ESS-BEEEEEEEE-SS-------SEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEEccC------------CEEEEEEe-cCCCccEEEEEEecCC-------cEEEEEcCCCeEEEEEEC
Confidence            89998776521            22222221 1235678999999887       689999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.20  E-value=0.00049  Score=52.00  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      -|.+++.|++     .|.+++.+.++|.....+..-..-=......+++.++..++.|+..+..|..+
T Consensus        62 vgdfVV~GCy-----~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   62 VGDFVVLGCY-----SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             ECCEEEEEEc-----cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence            4678999987     88999999999977776664332223345677899999999999999888876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.17  E-value=0.00056  Score=56.98  Aligned_cols=142  Identities=11%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +..+++++     .++.|..+|..+|+.+-.+............  ++..++.++.++.+..+|..+++       .+-.
T Consensus        65 ~~~v~v~~-----~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~-------~~W~  130 (377)
T TIGR03300        65 GGKVYAAD-----ADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGK-------ELWR  130 (377)
T ss_pred             CCEEEEEC-----CCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCc-------Eeee
Confidence            55677773     4789999999999887655432221122222  46678888899999999987632       2222


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce-----EEEEEeeccccCCccEEEEeec
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV-----TALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      ... ...+.+.-.. .+..++.++.++.|..+|.++++.+...   .......     .+....  +     ..++.+..
T Consensus       131 ~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~--~-----~~v~~~~~  198 (377)
T TIGR03300       131 AKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA--D-----GGVLVGFA  198 (377)
T ss_pred             ecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE--C-----CEEEEECC
Confidence            221 1222211111 3456777888999999999998876532   2111111     011111  1     35677778


Q ss_pred             CCcEEEEEeeecc
Q 037555          223 SGVIELWSISVNR  235 (298)
Q Consensus       223 dg~i~vwd~~~~~  235 (298)
                      ++.+..+|.++++
T Consensus       199 ~g~v~ald~~tG~  211 (377)
T TIGR03300       199 GGKLVALDLQTGQ  211 (377)
T ss_pred             CCEEEEEEccCCC
Confidence            8899999987764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00088  Score=58.75  Aligned_cols=175  Identities=7%  Similarity=0.031  Sum_probs=110.8

Q ss_pred             eEEeccCCCc-eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc------eee---eccc----cccccEEEEEEcCC
Q 037555           49 SHKLYGHGNE-LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW------KAM---GRLQ----SHSLTVTQIRFSHD  114 (298)
Q Consensus        49 ~~~~~~h~~~-v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~------~~~---~~~~----~~~~~v~~~~~~~~  114 (298)
                      .+.++.+... |.-+....+..+|++.+.|..+..-.|+||+++.-      .++   +.+.    ....++.+++++.+
T Consensus        57 ~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~  136 (933)
T KOG2114|consen   57 IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED  136 (933)
T ss_pred             eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence            3555666666 44444444446788877654332227999998643      222   1111    13567899999999


Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      -+.+|.|-.+|.|..+.-+-....   +...........+|+.+.+..++..++.+..-..|.+|.+.... +. ...+.
T Consensus       137 l~~Iv~Gf~nG~V~~~~GDi~RDr---gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~-~~~ld  211 (933)
T KOG2114|consen  137 LKTIVCGFTNGLVICYKGDILRDR---GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PS-LKVLD  211 (933)
T ss_pred             ccEEEEEecCcEEEEEcCcchhcc---ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cc-eeeec
Confidence            899999999999999865432211   11222223346799999999888763333334679999998544 22 22455


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+.....|..+++..     .-+++++ +..|.+|+....
T Consensus       212 ~~G~~lnCss~~~~t-----~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  212 NNGISLNCSSFSDGT-----YQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             cCCccceeeecCCCC-----ccEEEec-CceEEEEcCCCc
Confidence            677888999998876     3244443 346999988754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.13  E-value=3.7e-05  Score=65.46  Aligned_cols=121  Identities=16%  Similarity=0.207  Sum_probs=87.8

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ..|.--+++..+.+++.|+.-|.+++|+-..++...  ....+....+.....+++.     .+++.|+..|.|.++.+.
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--~~~~~~~~~~~~~~vs~~e-----~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--LKNEGATGITCVRSVSSVE-----YLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhc--ccccCccceEEEEEecchh-----HhhhhhcCCceEEeehhh
Confidence            334444556678999999999999999987766543  1223344556677788877     789999999999999887


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .......        ......  ...|...|++++|++++       ..+.+|...|+|.+-.|+
T Consensus       107 ~~~p~~~--------~~~t~~--d~~~~~rVTal~Ws~~~-------~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  107 KELPRDL--------DYVTPC--DKSHKCRVTALEWSKNG-------MKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ccCCCcc--------eeeccc--cccCCceEEEEEecccc-------cEEeecCCCceEEEEEec
Confidence            7422211        222222  22488999999999999       899999999999876654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.0026  Score=52.81  Aligned_cols=177  Identities=15%  Similarity=0.130  Sum_probs=93.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--ccc------ccccEEEEEEcC-----CC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQS------HSLTVTQIRFSH-----DD  115 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~  115 (298)
                      ..-+...+++|++++.| +=-++|+|     .++|.+.|.|++....+..  +..      ....++++.|..     |+
T Consensus        79 ~~l~~~~~g~vtal~~S-~iGFvaig-----y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNS-DIGFVAIG-----YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEE---S-SEEEEEE--BTSEEEEE-----ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             hhheeccCCcEeEEecC-CCcEEEEE-----ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            33445568999999997 55588888     4699999999986655533  222      344678888863     33


Q ss_pred             ---CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE-EccCC--------------------CEEEEee
Q 037555          116 ---NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS-WNPFG--------------------HEFATGS  171 (298)
Q Consensus       116 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--------------------~~l~~~~  171 (298)
                         -.+++|...|.+.+|.+.....+............+.++|..+. ++.+.                    +-++...
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               37889999999999998632222111222222234556666655 32211                    1244444


Q ss_pred             CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+..+|++...+.+....  .+ ........+.+-+......+..|++-..+|.|++|.+..-
T Consensus       233 Se~~irv~~~~~~k~~~K--~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHK--SF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             -SSEEEEE-TT---EEEE--E--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             cccceEEEeCCCCcccce--ee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            467899999887766542  22 1222333444532100001167888889999999998765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.3e-05  Score=65.81  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=76.6

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEE-EEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT-QIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      -.-.|.-+.|+|.-.++|.+     .++|.|.+..+. .+.+.++.-+...++ +++|.|||++|+.|-.||+|++.|+.
T Consensus        19 l~~~i~~~ewnP~~dLiA~~-----t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATR-----TEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             cccceEEEEEcCccchhhee-----ccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            34568889999999999999     679999999998 777777876777777 99999999999999999999999999


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      .+..      ...........|.++-|.+
T Consensus        93 ~~~~------l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   93 KGGR------LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCCc------eeccccccccchheeeccc
Confidence            7532      2222233456677777763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.08  E-value=0.0043  Score=51.59  Aligned_cols=203  Identities=11%  Similarity=0.092  Sum_probs=106.7

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------------------------------------------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------------------------------------------   95 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------------------------------------------   95 (298)
                      .|+.+.|+++..-|+++-     ..|.|.||.....+.                                          
T Consensus         3 ~v~~vs~a~~t~Elav~~-----~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGL-----ESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEE-----TTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecCCCceEEEEc-----cCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence            478888888877788874     467777765532110                                          


Q ss_pred             -eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE--eec------cCCceEEEEEcc----
Q 037555           96 -MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR--QEA------HKRIIWSCSWNP----  162 (298)
Q Consensus        96 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~------~~~~v~~~~~~~----  162 (298)
                       ...++...++|++++.+ |--+++.|..+|.+.|.|++.+       ..+..  +..      ....++++.|..    
T Consensus        78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP-------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP-------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT-------EEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC-------eEEeeccccccccccccccCeeEEEEEEEecC
Confidence             11112235788999987 4448999999999999999753       22222  111      234677888863    


Q ss_pred             -CC---CEEEEeeCCCeEEEEEccC-Ccc--eeeeee-cCCCCCceEEEEEe-eccc---------------c-CCccEE
Q 037555          163 -FG---HEFATGSRDKTVKIWAVEN-KSS--VKQILA-LPPFNSSVTALSWV-GLDR---------------Q-KNHGFL  217 (298)
Q Consensus       163 -~~---~~l~~~~~dg~i~~wd~~~-~~~--~~~~~~-~~~~~~~v~~~~~~-~~~~---------------~-~~~~~l  217 (298)
                       |+   -.+++|+..|.+.+|.+.- ...  ...+.. ...+.++|..+..- .+..               . .-..++
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v  229 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV  229 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence             22   4788999999999998752 111  111111 12355666665532 2111               0 001244


Q ss_pred             EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-----cCCCCCCCcceEEEeeeCCCcEE
Q 037555          218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-----THEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                      +++ .+..++++...+.             +......   ........+.+-     ..+       ..|++-..+|.|+
T Consensus       230 Vvv-Se~~irv~~~~~~-------------k~~~K~~---~~~~~~~~~~vv~~~~~~~~-------~~Lv~l~~~G~i~  285 (395)
T PF08596_consen  230 VVV-SESDIRVFKPPKS-------------KGAHKSF---DDPFLCSSASVVPTISRNGG-------YCLVCLFNNGSIR  285 (395)
T ss_dssp             EEE--SSEEEEE-TT----------------EEEEE----SS-EEEEEEEEEEEE-EEEE-------EEEEEEETTSEEE
T ss_pred             EEE-cccceEEEeCCCC-------------cccceee---ccccccceEEEEeecccCCc-------eEEEEEECCCcEE
Confidence            444 4677999988765             3222221   122233334442     234       6888888999999


Q ss_pred             EeEec
Q 037555          293 VFQVN  297 (298)
Q Consensus       293 iw~~~  297 (298)
                      ++.+.
T Consensus       286 i~SLP  290 (395)
T PF08596_consen  286 IYSLP  290 (395)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99763

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.04  E-value=0.00054  Score=58.97  Aligned_cols=197  Identities=7%  Similarity=-0.015  Sum_probs=115.1

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCC
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTG  138 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  138 (298)
                      -++|+|+.+...+    ...+.+.+.|.++.+...++.-- .....+.++|+|+++++.+.+    .++...+...    
T Consensus       199 PlpnDGk~l~~~~----ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e----  269 (635)
T PRK02888        199 PLPNDGKDLDDPK----KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE----  269 (635)
T ss_pred             ccCCCCCEeeccc----ceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc----
Confidence            3455676654443    34678888899887776665532 244678899999998887632    2222222211    


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-----CcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-----KSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                         ......+...  .+  .++.++|++...  .++.|.+.|.++     .....   .++ -......+.++|++.   
T Consensus       270 ---~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~---yIP-VGKsPHGV~vSPDGk---  333 (635)
T PRK02888        270 ---RDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR---YVP-VPKNPHGVNTSPDGK---  333 (635)
T ss_pred             ---CceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE---EEE-CCCCccceEECCCCC---
Confidence               0001111100  00  123446766665  367899999987     33333   333 456678999999994   


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       .+++++..+..|.|+|+.+.......... ........+.    -.......+|.+++       +.+.|.--|..|-.
T Consensus       334 -ylyVanklS~tVSVIDv~k~k~~~~~~~~-~~~~vvaeve----vGlGPLHTaFDg~G-------~aytslf~dsqv~k  400 (635)
T PRK02888        334 -YFIANGKLSPTVTVIDVRKLDDLFDGKIK-PRDAVVAEPE----LGLGPLHTAFDGRG-------NAYTTLFLDSQIVK  400 (635)
T ss_pred             -EEEEeCCCCCcEEEEEChhhhhhhhccCC-ccceEEEeec----cCCCcceEEECCCC-------CEEEeEeecceeEE
Confidence             45555666899999999875321110000 0001122221    13334556788888       78888888999999


Q ss_pred             eEec
Q 037555          294 FQVN  297 (298)
Q Consensus       294 w~~~  297 (298)
                      |++.
T Consensus       401 wn~~  404 (635)
T PRK02888        401 WNIE  404 (635)
T ss_pred             EehH
Confidence            9974

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=5.2e-05  Score=63.82  Aligned_cols=96  Identities=15%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE-EEEEccCCCEEEEeeCCCeEEEEE
Q 037555          102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      -...+.-+.|+|.-.++|.+..+|.+.+..+.        +..+-.+..+...++ +++|.|||+.|++|-.||+|++.|
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN--------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec--------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            34567889999999999999999999998887        344555555666666 999999999999999999999999


Q ss_pred             ccCCcceeeeeecCCCCCceEEEEEee
Q 037555          181 VENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ..++..+... .+ ....+|.++.|.+
T Consensus        91 ve~~~~l~~~-~~-s~e~~is~~~w~~  115 (665)
T KOG4640|consen   91 VEKGGRLVSF-LF-SVETDISKGIWDR  115 (665)
T ss_pred             ccCCCceecc-cc-ccccchheeeccc
Confidence            9998876632 12 2456788888875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=0.0021  Score=54.12  Aligned_cols=150  Identities=11%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      .+.+....-.+..+.++|+|+++++++      +|.-.|+.....+...     .+....+.|.+ .+.+|+-...+.|.
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g------~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~   92 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG------DGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIK   92 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE------TTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc------CCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEE
Confidence            344444555688999999999999974      7888888854333322     23445688888 44577777788999


Q ss_pred             EEE-eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          129 VFA-IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       129 iwd-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ++. +..        .....+.. ...+..+-.   |..|...+. +.|.+||..+++.+.   .+..  .+|..+.|++
T Consensus        93 I~kn~~~--------~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~---~i~v--~~vk~V~Ws~  154 (443)
T PF04053_consen   93 IYKNFKN--------EVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIR---RIDV--SAVKYVIWSD  154 (443)
T ss_dssp             EEETTEE---------TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEE---EESS---E-EEEEE-T
T ss_pred             EEEcCcc--------ccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceee---EEec--CCCcEEEEEC
Confidence            963 322        11112221 122333332   777766665 489999999998887   4432  2389999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeec
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ++     ++++..+.+ .+.|++....
T Consensus       155 ~g-----~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  155 DG-----ELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             TS-----SEEEEE-S--SEEEEEE-HH
T ss_pred             CC-----CEEEEEeCC-eEEEEEecch
Confidence            98     677777654 6888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.96  E-value=0.0013  Score=43.24  Aligned_cols=104  Identities=22%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555          106 VTQIRFSH---DD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV  181 (298)
Q Consensus       106 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  181 (298)
                      |+++++..   +| +.|++|+.|..|++|+-..         .+..+. ....|..+.-... ..|+.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            56666654   33 5899999999999998653         344444 3466777776654 67999999999999986


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      ... . .   ..+ .+..+.++++.... ..+..-|++|-.+|.|-
T Consensus        71 ~~R-l-W---RiK-SK~~~~~~~~~D~~-gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQR-L-W---RIK-SKNQVTSMAFYDIN-GDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cce-e-e---eec-cCCCeEEEEEEcCC-CCCceEEEEEecCCeEE
Confidence            432 1 2   333 33446677665543 11225788998888874

>smart00320 WD40 WD40 repeats

Probab=97.93  E-value=3.1e-05  Score=40.33  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           94 KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      +....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.85  E-value=0.0051  Score=51.69  Aligned_cols=48  Identities=17%  Similarity=0.281  Sum_probs=37.6

Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .|.||+.. |+.+.++.-..+.+.++.|+.+. .|+....||.+++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            59999976 77776655434899999998754 56667789999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.85  E-value=0.001  Score=59.35  Aligned_cols=137  Identities=9%  Similarity=0.085  Sum_probs=89.2

Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCc-eEEEEEcc-----CCCEEEEeeCCCeEEEEEccCCcc-ee--eeee
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-IWSCSWNP-----FGHEFATGSRDKTVKIWAVENKSS-VK--QILA  192 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~-~~--~~~~  192 (298)
                      .....|+-.|+..       ++.+..+..+... |..++-..     ....-+.|-.+..+..||.|-... +.  ....
T Consensus       501 ~~~~~ly~mDLe~-------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  501 NNPNKLYKMDLER-------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             CCCCceEEEecCC-------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            3457788888887       6778888877654 55443221     123456677788899999986431 11  0111


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      + .......|++-..+|      +||+|+.+|.||+||--..             + .+.  .+.+-..+|..|..+.||
T Consensus       574 Y-~~~~~Fs~~aTt~~G------~iavgs~~G~IRLyd~~g~-------------~-AKT--~lp~lG~pI~~iDvt~DG  630 (794)
T PF08553_consen  574 Y-SSKNNFSCFATTEDG------YIAVGSNKGDIRLYDRLGK-------------R-AKT--ALPGLGDPIIGIDVTADG  630 (794)
T ss_pred             c-ccCCCceEEEecCCc------eEEEEeCCCcEEeecccch-------------h-hhh--cCCCCCCCeeEEEecCCC
Confidence            1 234557777777776      8999999999999994321             1 111  144678999999999999


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEe
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                             .+|++.+ +..|.+++.
T Consensus       631 -------kwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  631 -------KWILATC-KTYLLLIDT  646 (794)
T ss_pred             -------cEEEEee-cceEEEEEE
Confidence                   5554443 456766664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.84  E-value=0.0046  Score=51.87  Aligned_cols=171  Identities=9%  Similarity=0.058  Sum_probs=96.1

Q ss_pred             CceEEEEEEcCCceeeecccccc----c---cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHS----L---TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      .++.+..+|..+++.+-......    .   ....+.-+|  .+..++.++.+|.+..+|..++.       .+-... .
T Consensus       213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-------~~W~~~-~  284 (394)
T PRK11138        213 DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-------IVWKRE-Y  284 (394)
T ss_pred             CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-------EEEeec-C
Confidence            37788888888887654332100    0   011111223  34567777789999999987642       111111 1


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                       .....+.  ..+..++.++.+|.+..+|..+++.+-......  .....+....  +     ..++.++.+|.|++.|.
T Consensus       285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~v~--~-----g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPVLY--N-----GYLVVGDSEGYLHWINR  352 (394)
T ss_pred             -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCEEE--C-----CEEEEEeCCCEEEEEEC
Confidence             1111122  246678888899999999999887654211111  1111222222  2     57888899999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .++             +.+.....   ....+. +..+ .+        ..|+.++.||.|..+++
T Consensus       353 ~tG-------------~~~~~~~~---~~~~~~s~P~~-~~--------~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        353 EDG-------------RFVAQQKV---DSSGFLSEPVV-AD--------DKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCC-------------CEEEEEEc---CCCcceeCCEE-EC--------CEEEEEeCCceEEEEeC
Confidence            887             44333321   111121 1122 23        47888899999988764

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=8e-05  Score=38.66  Aligned_cols=38  Identities=29%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      .....+..|...|.++.|++.++.+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.79  E-value=0.0053  Score=51.79  Aligned_cols=140  Identities=19%  Similarity=0.321  Sum_probs=77.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE-Ec
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW-AV  181 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w-d~  181 (298)
                      ......+.++|+|+.+++++ ||...++....       .+...     .+.-...+|.+ .+.+|+-...+.|.++ ++
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~-------~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA-------WRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNF   97 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT-------TEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETT
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccC-------Ccccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcC
Confidence            34467899999999988855 77777887432       22211     23345678888 5567777778889996 33


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA  261 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (298)
                      +. ....   .+. .+..+..+-.   |     .+|+..+. +.|.+||..++             +.+..+.     -.
T Consensus        98 ~~-~~~k---~i~-~~~~~~~If~---G-----~LL~~~~~-~~i~~yDw~~~-------------~~i~~i~-----v~  145 (443)
T PF04053_consen   98 KN-EVVK---SIK-LPFSVEKIFG---G-----NLLGVKSS-DFICFYDWETG-------------KLIRRID-----VS  145 (443)
T ss_dssp             EE--TT---------SS-EEEEE----S-----SSEEEEET-TEEEEE-TTT---------------EEEEES-----S-
T ss_pred             cc-ccce---EEc-CCcccceEEc---C-----cEEEEECC-CCEEEEEhhHc-------------ceeeEEe-----cC
Confidence            32 2222   121 1222333333   4     45666554 48999999887             6666654     23


Q ss_pred             eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +|..+.|++++       .+++-.+.+ .+.|++.
T Consensus       146 ~vk~V~Ws~~g-------~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  146 AVKYVIWSDDG-------ELVALVTKD-SIYILKY  172 (443)
T ss_dssp             E-EEEEE-TTS-------SEEEEE-S--SEEEEEE
T ss_pred             CCcEEEEECCC-------CEEEEEeCC-eEEEEEe
Confidence            48999999998       788887755 5777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.016  Score=48.30  Aligned_cols=158  Identities=11%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRT  135 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~  135 (298)
                      -..++.++.+..+.....    .+..|.+.|..+.+......... ....++++|+++.+.++..   ++++.+.|..+ 
T Consensus        76 p~~i~v~~~~~~vyv~~~----~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-  149 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTG----DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-  149 (381)
T ss_pred             ccceeeCCCCCeEEEecC----CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-
Confidence            446788888886655532    36889999987777666554222 5678999999987776655   67888888776 


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCC
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                            .........-..+ ..+++.|+++.++... .++.|.+.|........ ..............+.+.|++    
T Consensus       150 ------~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g----  218 (381)
T COG3391         150 ------NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG----  218 (381)
T ss_pred             ------CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCC----
Confidence                  3444443333334 8899999999776665 78899999977654431 000011223445678999988    


Q ss_pred             ccEEEEeec-C--CcEEEEEeeec
Q 037555          214 HGFLAVGME-S--GVIELWSISVN  234 (298)
Q Consensus       214 ~~~l~~g~~-d--g~i~vwd~~~~  234 (298)
                       ..+..... +  +.+...|..++
T Consensus       219 -~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         219 -NRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             -CEEEEEeccCCCceEEEEeCCCc
Confidence             44444433 3  57888887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.014  Score=47.51  Aligned_cols=202  Identities=14%  Similarity=0.103  Sum_probs=107.8

Q ss_pred             CCEEEeEeccCC----CCc-eEEEEEEcCCc----eeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           68 GKLVASSCKAQS----TAA-AEIWLWEVGSW----KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        68 ~~~l~~~~~~~~----~~d-~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      ..+|++|..-..    ... |.|.++++.+.    ..+..+  ....++|++++-- ++. |+++. .+.|.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            467777654110    112 99999999873    122222  2357788888776 443 44333 5899999998743


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                      .    ........ ....+.++...  ++++++|.....+.++..+.. ..+..+.. ......++++.+-+++     .
T Consensus       119 ~----l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~-----~  185 (321)
T PF03178_consen  119 T----LLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDE-----D  185 (321)
T ss_dssp             S----EEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SS-----S
T ss_pred             c----chhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCC-----c
Confidence            1    11222222 22355666554  669999998888888765542 22332222 2235568888888766     5


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCC-CcceeeeeccCCcccceEEEE---EeecC--CCCCCCcceEEEeeeCCC
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPS-TANIIIRFDPFACHVAAVNRM---AWKTH--EKPKNSRTMQLASCGADN  289 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~---~~~~~--~~~~~~~~~~l~s~~~d~  289 (298)
                      .++.+..+|.|.++..........   ... .......++    ....|+++   ++.|.  .. .......++.++.+|
T Consensus       186 ~~i~~D~~gnl~~l~~~~~~~~~~---~~~~~L~~~~~f~----lg~~v~~~~~~~l~~~~~~~-~~~~~~~i~~~T~~G  257 (321)
T PF03178_consen  186 TIIVGDKDGNLFVLRYNPEIPNSR---DGDPKLERISSFH----LGDIVNSFRRGSLIPRSGSS-ESPNRPQILYGTVDG  257 (321)
T ss_dssp             EEEEEETTSEEEEEEE-SS-SSTT---TTTTBEEEEEEEE-----SS-EEEEEE--SS--SSSS--TTEEEEEEEEETTS
T ss_pred             EEEEEcCCCeEEEEEECCCCcccc---cccccceeEEEEE----CCCccceEEEEEeeecCCCC-cccccceEEEEecCC
Confidence            899999999999999864211110   000 112222222    34567777   55552  20 000113578888899


Q ss_pred             cEEE
Q 037555          290 TVRV  293 (298)
Q Consensus       290 ~i~i  293 (298)
                      .|.+
T Consensus       258 ~Ig~  261 (321)
T PF03178_consen  258 SIGV  261 (321)
T ss_dssp             -EEE
T ss_pred             EEEE
Confidence            8873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.78  E-value=0.014  Score=48.13  Aligned_cols=100  Identities=10%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             cCCCCEEEeEeccC----CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555           65 DHQGKLVASSCKAQ----STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI  140 (298)
Q Consensus        65 s~~~~~l~~~~~~~----~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (298)
                      |||+++++......    .+..+.+.|+|+.+++....... ...+....|+|+|+.++-.. ++.|.+++......   
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe---
Confidence            57888777642210    12257899999998766554443 67788999999999888776 67888887654311   


Q ss_pred             ceeeeEEeec-------c---------CCceEEEEEccCCCEEEEeeC
Q 037555          141 DYQLIARQEA-------H---------KRIIWSCSWNPFGHEFATGSR  172 (298)
Q Consensus       141 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~l~~~~~  172 (298)
                        ..+ +..+       -         -+.-..+.|+|++++|+....
T Consensus        76 --~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   76 --TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             --EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             --EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence              001 0011       0         112256889999988877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.74  E-value=0.014  Score=46.64  Aligned_cols=201  Identities=12%  Similarity=0.108  Sum_probs=115.4

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      ..++++.+++++.....   +....|.|.|+...+.+..+.. .+ +..+-=.. ..-+.+.+.||.+.-..+.......
T Consensus        98 ~~~~ls~dgk~~~V~N~---TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNF---TPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             GGEEE-TTSSEEEEEEE---SSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cceEEccCCcEEEEEcc---CCCCeEEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence            35678889998888766   5577899999998888877652 22 22222122 2457788889999999998654322


Q ss_pred             cceeeeEEeeccCCceE-EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeec
Q 037555          140 IDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGL  208 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~  208 (298)
                        ......+.....++. .-++...+..++..+.+|.|+--|+....... ...+..          .++.-.-+++++.
T Consensus       172 --~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~  248 (342)
T PF06433_consen  172 --QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADGWRPGGWQLIAYHAA  248 (342)
T ss_dssp             --EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred             --EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccCcCCcceeeeeeccc
Confidence              111122222233332 33445556677778899999999987654321 111111          1122334555554


Q ss_pred             cccCCccEEEEee--------cCC--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          209 DRQKNHGFLAVGM--------ESG--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       209 ~~~~~~~~l~~g~--------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .     +.|.+-.        .|+  .|.++|+.+.             +.+.++.    -..++.+|..+.+.+     
T Consensus       249 ~-----~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-------------krv~Ri~----l~~~~~Si~Vsqd~~-----  301 (342)
T PF06433_consen  249 S-----GRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-------------KRVARIP----LEHPIDSIAVSQDDK-----  301 (342)
T ss_dssp             T-----TEEEEEEEE--TT-TTS-EEEEEEEETTTT-------------EEEEEEE----EEEEESEEEEESSSS-----
T ss_pred             c-----CeEEEEecCCCCCCccCCceEEEEEECCCC-------------eEEEEEe----CCCccceEEEccCCC-----
Confidence            3     2333321        122  4556666655             5555553    245788999999874     


Q ss_pred             ceEEEe-eeCCCcEEEeEec
Q 037555          279 TMQLAS-CGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s-~~~d~~i~iw~~~  297 (298)
                       .+|++ ...++.|.+||..
T Consensus       302 -P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  302 -PLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             --EEEEEETTTTEEEEEETT
T ss_pred             -cEEEEEcCCCCeEEEEeCc
Confidence             46654 4568999999863

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.73  E-value=0.0072  Score=53.03  Aligned_cols=162  Identities=18%  Similarity=0.224  Sum_probs=88.9

Q ss_pred             CceEEEEEcCCCCEEEeEec--cC-CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-CeEEEEEe
Q 037555           57 NELFSLCCDHQGKLVASSCK--AQ-STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-RQFSVFAI  132 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~--~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~  132 (298)
                      ..+...+++|+|+.++..-.  +. .+....|.+++.. +.. ..+.. ....+.-.|+|+|..+.+.... ..+++.+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            46789999999998877742  00 0123466666653 222 22321 2237888999998877776533 22222221


Q ss_pred             ccCCCCccc-----eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE---EEccCCc-ceeeeeec-CCCCCceEE
Q 037555          133 QRTGTGEID-----YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI---WAVENKS-SVKQILAL-PPFNSSVTA  202 (298)
Q Consensus       133 ~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---wd~~~~~-~~~~~~~~-~~~~~~v~~  202 (298)
                      ...  ....     ......  .....|..+.|+|||..++... ++.|.+   -....+. .+.....+ ......+.+
T Consensus       427 ~~~--gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        427 PAT--GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCC--ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence            110  0000     000010  2346799999999999888776 477776   3333332 11100112 123344688


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      +.|.+++     . |+++..++.-.+|.+.
T Consensus       502 l~W~~~~-----~-L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        502 LDWRTGD-----S-LVVGRSDPEHPVWYVN  525 (591)
T ss_pred             ceEecCC-----E-EEEEecCCCCceEEEe
Confidence            9999987     4 4566655555566654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.012  Score=45.62  Aligned_cols=173  Identities=13%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      +.|-...|.++.|+|+.+.|.+..     ....-.|+=..+|+.+.++.- .-.....+++..++++.++--.++.+.++
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence            456666799999999998888873     345555555556888877541 12234568888888888888889999999


Q ss_pred             EeccCCCCccceeeeEEee--cc-CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC-------CCce
Q 037555          131 AIQRTGTGEIDYQLIARQE--AH-KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF-------NSSV  200 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------~~~v  200 (298)
                      .+...............+.  .+ +.....++|.|....|..+-.-.-+.||................+       -..+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            8876432111011011111  12 456788999999988888887777788776643321111111111       1236


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .++.|++...    .+++-+.+++.+.-.|...
T Consensus       236 Sgl~~~~~~~----~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         236 SGLEFNAITN----SLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccceecCCCC----cEEEEecCCceEEEEecCC
Confidence            6777776542    6777777888877777654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0052  Score=40.43  Aligned_cols=105  Identities=19%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             eEEEEEcc---CC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          155 IWSCSWNP---FG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       155 v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      |+++++..   ++ +.|++|+.|..||+|+-.  +.+.   .+. ....|++++-...+      .++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~---Ei~-e~~~v~~L~~~~~~------~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVA---EIT-ETDKVTSLCSLGGG------RFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEE---EEe-cccceEEEEEcCCC------EEEEEecCCEEEEEe
Confidence            55666554   22 689999999999999754  3344   333 34667777776654      689999999999997


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                      -..               .+.++.    ....+.++++..-.   .++..-|++|=.+|.|-+
T Consensus        70 ~~~---------------RlWRiK----SK~~~~~~~~~D~~---gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   70 RSQ---------------RLWRIK----SKNQVTSMAFYDIN---GDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             Ccc---------------eeeeec----cCCCeEEEEEEcCC---CCCceEEEEEecCCeEEe
Confidence            642               223322    22335555554322   011257888888888753

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0026  Score=53.07  Aligned_cols=137  Identities=10%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-------EEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc--
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-------LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH--  151 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--  151 (298)
                      ....|+-.|++.|+.+....-+.. |.-+.+.|+.+       .-+.|-.+..|+-||++.....     .+.....|  
T Consensus       354 ~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----kl~~~q~kqy  427 (644)
T KOG2395|consen  354 EQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----KLAVVQSKQY  427 (644)
T ss_pred             CcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----eeeeeecccc
Confidence            356688889999999988876555 77778888653       2334556788889998854321     12222222  


Q ss_pred             --CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          152 --KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       152 --~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                        .....|.+-. ...++++|+.+|.||+||-- +....  ..+++...+|..+..+.+|     .+|+..+ +..+.+.
T Consensus       428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri-~~~AK--TAlPgLG~~I~hVdvtadG-----Kwil~Tc-~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDRI-GRRAK--TALPGLGDAIKHVDVTADG-----KWILATC-KTYLLLI  497 (644)
T ss_pred             ccccccceeeec-CCceEEEeecCCcEEeehhh-hhhhh--hcccccCCceeeEEeeccC-----cEEEEec-ccEEEEE
Confidence              1233444444 34589999999999999973 33222  2678889999999999998     5666555 5667777


Q ss_pred             Eeee
Q 037555          230 SISV  233 (298)
Q Consensus       230 d~~~  233 (298)
                      ++.-
T Consensus       498 ~t~~  501 (644)
T KOG2395|consen  498 DTLI  501 (644)
T ss_pred             EEec
Confidence            7753

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=9e-05  Score=54.73  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=78.2

Q ss_pred             EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF  196 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  196 (298)
                      .+..-+.||.|+-++++....      ..+....+...   .....-+..++.|+.+|.|.+|...........  ....
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~------s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKE------SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSG  100 (238)
T ss_pred             hhccccCCcccccchhhhhhh------hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHh--hhcc
Confidence            344556678888777765221      01111112111   111223568999999999999987632222211  1112


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPK  275 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  275 (298)
                      ...|-++.  |.+.  .+.+..+++.+|.|+.|++...+             .+..   ...|. .++..+..+..+   
T Consensus       101 ~e~i~~~I--p~~~--~~~~~c~~~~dg~ir~~n~~p~k-------------~~g~---~g~h~~~~~e~~ivv~sd---  157 (238)
T KOG2444|consen  101 EESIDLGI--PNGR--DSSLGCVGAQDGRIRACNIKPNK-------------VLGY---VGQHNFESGEELIVVGSD---  157 (238)
T ss_pred             cccceecc--cccc--ccceeEEeccCCceeeeccccCc-------------eeee---eccccCCCcceeEEecCC---
Confidence            22332222  2221  11588899999999999987652             2222   22354 455555555555   


Q ss_pred             CCcceEEEee--eCCCcEEEeEec
Q 037555          276 NSRTMQLASC--GADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l~s~--~~d~~i~iw~~~  297 (298)
                          ..++.+  |.|..++.|++.
T Consensus       158 ----~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  158 ----EFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ----ceEEeeccccchhhhhcchh
Confidence                577777  778888888764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.52  E-value=0.038  Score=45.67  Aligned_cols=175  Identities=11%  Similarity=0.129  Sum_probs=89.7

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccc----------------cccEEEEEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSH----------------SLTVTQIRF  111 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~----------------~~~v~~~~~  111 (298)
                      ...+......+....|||+|+.+|...      ++.|.+++..+++..+. ..+.                -+.-..+.|
T Consensus        35 ~~~l~~~~~~~~~~~~sP~g~~~~~v~------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W  108 (353)
T PF00930_consen   35 ITPLTPPPPKLQDAKWSPDGKYIAFVR------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW  108 (353)
T ss_dssp             EEESS-EETTBSEEEE-SSSTEEEEEE------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE
T ss_pred             eEECcCCccccccceeecCCCeeEEEe------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE
Confidence            333433356788999999999999984      68899999876644322 1120                012256889


Q ss_pred             cCCCCEEEEEeCC-CeEEEEEeccCCCC----------------cc------------cee--eeEEe---eccCCceEE
Q 037555          112 SHDDNLLLSVSRD-RQFSVFAIQRTGTG----------------EI------------DYQ--LIARQ---EAHKRIIWS  157 (298)
Q Consensus       112 ~~~~~~l~~~~~d-g~i~iwd~~~~~~~----------------~~------------~~~--~~~~~---~~~~~~v~~  157 (298)
                      +||+++|+....| ..+..+.+......                ..            ..+  .+...   ......+..
T Consensus       109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred             CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence            9999988876543 22222222111000                00            000  00000   122445778


Q ss_pred             EEEccCCCEEEEee--CC---CeEEEEEccCCcceeeeeecC-CCCCceEEEEEe-eccccCCccEEEEeecCCcEEEEE
Q 037555          158 CSWNPFGHEFATGS--RD---KTVKIWAVENKSSVKQILALP-PFNSSVTALSWV-GLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       158 ~~~~~~~~~l~~~~--~d---g~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      +.|.+++..|+..-  .+   -.+.+.|..++.......... +--..-....+. +++.    .++.....+|--+||-
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~----~~l~~s~~~G~~hly~  264 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN----EFLWISERDGYRHLYL  264 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS----EEEEEEETTSSEEEEE
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC----EEEEEEEcCCCcEEEE
Confidence            88999888444432  22   236667776655433221111 111122344544 4442    6777777888766666


Q ss_pred             eee
Q 037555          231 ISV  233 (298)
Q Consensus       231 ~~~  233 (298)
                      +..
T Consensus       265 ~~~  267 (353)
T PF00930_consen  265 YDL  267 (353)
T ss_dssp             EET
T ss_pred             Ecc
Confidence            554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.0047  Score=47.57  Aligned_cols=166  Identities=10%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE--------Eec
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF--------AIQ  133 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw--------d~~  133 (298)
                      .|||||.+|...-.|.+...|.|-|||...+ +.+..+..|.-.-..+.|.+||+.++.+..  -|..-        +++
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence            5899999999987766666789999998743 456678888888899999999999887642  22222        111


Q ss_pred             cCCCCcc-----ceeeeE--Eee--ccCCceEEEEEccCCCEEEEeeCCCe-----EEEEEccCCcceeeeeecC-----
Q 037555          134 RTGTGEI-----DYQLIA--RQE--AHKRIIWSCSWNPFGHEFATGSRDKT-----VKIWAVENKSSVKQILALP-----  194 (298)
Q Consensus       134 ~~~~~~~-----~~~~~~--~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~-----  194 (298)
                      ..+....     .+.++.  ++.  .+.-.|..++..+++..++.+-..|.     ..+=-.+.++.+..+ .++     
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~-~~pee~~~  276 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL-DLPEEQTA  276 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc-CCCHHHHH
Confidence            1110000     011111  111  23345777888877776666544331     111111122222211 111     


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      .....|-+++.+....    .+.+++-..+...+||..++.
T Consensus       277 ~~anYigsiA~n~~~g----lV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         277 AFANYIGSIAANRRDG----LVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             HHHhhhhheeecccCC----eEEEecCCCCeEEEEEcCCCc
Confidence            1234577888876551    344444455678899999874

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.52  E-value=0.026  Score=43.69  Aligned_cols=171  Identities=11%  Similarity=0.111  Sum_probs=90.7

Q ss_pred             cccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeE
Q 037555           99 LQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTV  176 (298)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i  176 (298)
                      +.+-...+..++|.|+.+ ++++....+.|..++.+        ++.+..+.-. .+-.-.|++..++.++++--.++.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L   88 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL   88 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence            445555699999999755 56666667787766654        3444444322 2456788888767666655568999


Q ss_pred             EEEEccCCcc---eeeee--e--cC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcc
Q 037555          177 KIWAVENKSS---VKQIL--A--LP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTAN  248 (298)
Q Consensus       177 ~~wd~~~~~~---~~~~~--~--~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~  248 (298)
                      .++++.....   .....  .  +. ..+..+-.++|.|.+     +.|+.+-+..-..+|.++.......        -
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-----~~L~v~kE~~P~~l~~~~~~~~~~~--------~  155 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-----NRLFVAKERKPKRLYEVNGFPGGFD--------L  155 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-----TEEEEEEESSSEEEEEEESTT-SS----------
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-----CEEEEEeCCCChhhEEEccccCccc--------e
Confidence            9998843221   11111  1  11 244568999999987     5666677777777888765210000        0


Q ss_pred             eeee---eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          249 IIIR---FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       249 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ....   +.........+.+++++|...      .+++....+..|..+|.
T Consensus       156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~------~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  156 FVSDDQDLDDDKLFVRDLSGLSYDPRTG------HLLILSDESRLLLELDR  200 (248)
T ss_dssp             EEEE-HHHH-HT--SS---EEEEETTTT------EEEEEETTTTEEEEE-T
T ss_pred             eeccccccccccceeccccceEEcCCCC------eEEEEECCCCeEEEECC
Confidence            0000   010112334578899998752      67777777777766653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.51  E-value=0.0038  Score=52.42  Aligned_cols=139  Identities=14%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTG  136 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  136 (298)
                      .-...+|+|||+.|+.+...  ...-.|+++|+......+ +....+.-..=.|+|||+.++-. +..|.-.||-.....
T Consensus       239 ~~~~P~fspDG~~l~f~~~r--dg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSR--DGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             ccCCccCCCCCCEEEEEECC--CCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence            33467899999988877642  234578888887666333 44333333366799999976654 456665666554332


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-Ce--EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-KT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      .      ....+......-..-.|+|+|.+|+..+.. |.  |.+.|+.++....   .+. .......-.|.+++
T Consensus       316 ~------~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~---~lt-~~~~~e~ps~~~ng  381 (425)
T COG0823         316 S------QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR---ILT-STYLNESPSWAPNG  381 (425)
T ss_pred             C------ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE---Ecc-ccccCCCCCcCCCC
Confidence            1      122333222222367899999999888753 44  6666665555322   222 23333345555655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0047  Score=51.57  Aligned_cols=145  Identities=14%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             CCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC-------EEEEeeCCCeEEEEEccCCc
Q 037555          114 DDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH-------EFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       114 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~wd~~~~~  185 (298)
                      +.++| .++.....++-.|++.       ++.+.....+.. |.-+.+.|+..       .=+.|=.|..|.-||.|-..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~-------GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~  415 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIER-------GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG  415 (644)
T ss_pred             ccceEeeCCCCcCcceeeeccc-------ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence            33433 3445556677778877       677777777666 77777777542       12345567889999998433


Q ss_pred             ceeeeeecCC----CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555          186 SVKQILALPP----FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA  261 (298)
Q Consensus       186 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (298)
                      . ..+...+.    ......|.+-..+|      +|++|+.+|.|++||. .+++.             +..  +.+...
T Consensus       416 ~-~kl~~~q~kqy~~k~nFsc~aTT~sG------~IvvgS~~GdIRLYdr-i~~~A-------------KTA--lPgLG~  472 (644)
T KOG2395|consen  416 K-NKLAVVQSKQYSTKNNFSCFATTESG------YIVVGSLKGDIRLYDR-IGRRA-------------KTA--LPGLGD  472 (644)
T ss_pred             c-ceeeeeeccccccccccceeeecCCc------eEEEeecCCcEEeehh-hhhhh-------------hhc--ccccCC
Confidence            2 11111111    22334556555554      8999999999999997 33211             111  557789


Q ss_pred             eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|..+..+.+|+      ..|+||  +..|.+-++.
T Consensus       473 ~I~hVdvtadGK------wil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  473 AIKHVDVTADGK------WILATC--KTYLLLIDTL  500 (644)
T ss_pred             ceeeEEeeccCc------EEEEec--ccEEEEEEEe
Confidence            999999999993      333443  5566665543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.044  Score=45.75  Aligned_cols=160  Identities=11%  Similarity=0.079  Sum_probs=108.5

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTG  136 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  136 (298)
                      ....++++++++.+..+...  ..++.+.+.|..+++.......-..+ ..+++.|+|+.+..+. .++.|.+.|.....
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~--~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~  193 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAG--NGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS  193 (381)
T ss_pred             CCceEEECCCCCEEEEEecc--cCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence            56688999999888877531  03689999999988887775433344 8999999999666655 78999999966521


Q ss_pred             CCccceeeeE-E---eeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          137 TGEIDYQLIA-R---QEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       137 ~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                             ... .   .......-..+.++|+++++++.-..   +.+...|..+........... .. ....+...|.+
T Consensus       194 -------v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g  264 (381)
T COG3391         194 -------VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAG  264 (381)
T ss_pred             -------eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCC
Confidence                   121 0   11122334678899999877665543   588999988876654211111 22 45678999998


Q ss_pred             ccCCccEEEEe-ecCCcEEEEEeeec
Q 037555          210 RQKNHGFLAVG-MESGVIELWSISVN  234 (298)
Q Consensus       210 ~~~~~~~l~~g-~~dg~i~vwd~~~~  234 (298)
                           .++.+. +..+.+.+.|..+.
T Consensus       265 -----~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         265 -----KAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             -----CEEEEEecCCCeEEEEeCCCC
Confidence                 566655 44578888888765

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.47  E-value=0.005  Score=53.29  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCC-----ceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCC-
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGS-----WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTG-  138 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~-  138 (298)
                      ++|++...+       ++.|.+.|..+     .+.+..+. -......+.++|||+++++++. +.++.|.|+...... 
T Consensus       286 kdGK~~~V~-------gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        286 KAGKFKTIG-------GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hCCCEEEEC-------CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            356655554       56899999887     34444444 3455688999999998776654 899999999874310 


Q ss_pred             ----ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555          139 ----EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       139 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  183 (298)
                          ........+..--.+ -...+|.++|+.+.+..-|..|..||+..
T Consensus       358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence                000112222222222 34578899998888888999999999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.00095  Score=60.04  Aligned_cols=106  Identities=11%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                      .+..++.|+..|.+...|+...-..  +..-...+++|++++|+.++     .+++.|-.+|.|.+||+..+        
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~dg-----~~l~~G~~~G~V~v~D~~~~--------  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQDG-----SLLLAGLGDGHVTVWDMHRA--------  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecCCC-----ceeccccCCCcEEEEEccCC--------
Confidence            4567888999999999998764321  11223357899999999999     79999999999999999886        


Q ss_pred             CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           ...+.+.........|.-+.+..++       ..++++..-|.  +|++.
T Consensus       163 -----k~l~~i~e~~ap~t~vi~v~~t~~n-------S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  163 -----KILKVITEHGAPVTGVIFVGRTSQN-------SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             -----cceeeeeecCCccceEEEEEEeCCC-------cEEEEccCCCc--eEEEE
Confidence                 4455544332223334444444444       56777777775  67654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.46  E-value=0.037  Score=48.75  Aligned_cols=177  Identities=11%  Similarity=0.044  Sum_probs=92.1

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe------CCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS------RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII  155 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  155 (298)
                      +|.+.-.+-..-.++.-..+....+...+++|+|+.++..-      .|..-.+|-.....      .. ..+.. ....
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg------~~-~~lt~-g~~~  399 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG------VA-VQVLE-GHSL  399 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC------cc-eeeec-CCCC
Confidence            45554443222222222223334678899999999876655      24444455443221      11 11111 1237


Q ss_pred             EEEEEccCCCEEEEeeCC-CeEEEE-----------EccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          156 WSCSWNPFGHEFATGSRD-KTVKIW-----------AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       156 ~~~~~~~~~~~l~~~~~d-g~i~~w-----------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                      ..-.|+|++..+++.... ..+++.           +++.+....      .....|..+.|+|++     ..++... +
T Consensus       400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG-----~RiA~i~-~  467 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDG-----VRAAMII-G  467 (591)
T ss_pred             CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCC-----CEEEEEE-C
Confidence            788999998877776533 122222           332222111      234579999999999     5565544 4


Q ss_pred             CcEEEEEeee---cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          224 GVIELWSISV---NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       224 g~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.|++--+..   +....         .....+.  ..-...+.++.|..++       .+ +.+..++...+|.++
T Consensus       468 g~v~Va~Vvr~~~G~~~l---------~~~~~l~--~~l~~~~~~l~W~~~~-------~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        468 GKVYLAVVEQTEDGQYAL---------TNPREVG--PGLGDTAVSLDWRTGD-------SL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             CEEEEEEEEeCCCCceee---------cccEEee--cccCCccccceEecCC-------EE-EEEecCCCCceEEEe
Confidence            7777743322   21000         0011111  1223346789999998       54 455555555666654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.41  E-value=0.043  Score=43.79  Aligned_cols=158  Identities=17%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555          101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      .-...+..+.-+++|++++++.....+.-|+.-...     ..+..  ......|..|.|.|++.+.+.+ ..|.|+.=+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-----w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-----WQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-----ceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            345678888889999988888777777777754321     22222  2345789999999998776654 788888876


Q ss_pred             cc-CCcceee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555          181 VE-NKSSVKQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC  258 (298)
Q Consensus       181 ~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      .. ..+.... +..+......+..++|.+..     ...++|+ .|.+ +.....+             +..........
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-----~~wa~gg-~G~l-~~S~DgG-------------ktW~~~~~~~~  273 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-----EIWAVGG-SGTL-LVSTDGG-------------KTWQKDRVGEN  273 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS------EEEEES-TT-E-EEESSTT-------------SS-EE-GGGTT
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCC-----CEEEEeC-CccE-EEeCCCC-------------ccceECccccC
Confidence            22 2221110 11122233447889999876     5555554 5544 2333333             22222211223


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      -...+..|.|.+..        .-...+.+|.|--|
T Consensus       274 ~~~n~~~i~f~~~~--------~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  274 VPSNLYRIVFVNPD--------KGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSS---EEEEEETT--------EEEEE-STTEEEEE
T ss_pred             CCCceEEEEEcCCC--------ceEEECCCcEEEEe
Confidence            45678889998765        44445667876544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.36  E-value=0.064  Score=44.46  Aligned_cols=211  Identities=10%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             CceEEEEEc-----------CCCCEEEeEeccCCCCceEEEEEEcCCc----eeeecccc---cc----ccEEEEEEcCC
Q 037555           57 NELFSLCCD-----------HQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQS---HS----LTVTQIRFSHD  114 (298)
Q Consensus        57 ~~v~~~~~s-----------~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~---~~----~~v~~~~~~~~  114 (298)
                      ++....-|+           .+.++|+..+.    .++.|+|.|+.+.    +..+++..   +.    ..-..+..-|+
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL----~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~  140 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGL----RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD  140 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBT----TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeee----ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC
Confidence            456666665           24567777764    5789999998742    33333321   11    22334455678


Q ss_pred             CCEEEEEeC------CCeEEEEEeccCCCCccceeeeEEeecc---CCceEEEEEccCCCEEEEeeC-------------
Q 037555          115 DNLLLSVSR------DRQFSVFAIQRTGTGEIDYQLIARQEAH---KRIIWSCSWNPFGHEFATGSR-------------  172 (298)
Q Consensus       115 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-------------  172 (298)
                      |+.++++-.      -|-+.++|-++       ..........   ...-..+.|.|..+.+++...             
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~t-------f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGET-------FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT---------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCcc-------ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            988888532      24566777664       3444444332   223467788888888887643             


Q ss_pred             -------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe-eecccccccCCCC
Q 037555          173 -------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI-SVNRTNDVSTPAP  244 (298)
Q Consensus       173 -------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~~~~  244 (298)
                             ..++.+||+.+.+.++.+ .+......+..+.|..+-. .. .-++.+...++|..|-- ..+.-..      
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~i-dLg~~g~~pLEvRflH~P~-~~-~gFvg~aLss~i~~~~k~~~g~W~a------  284 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTI-DLGEEGQMPLEVRFLHDPD-AN-YGFVGCALSSSIWRFYKDDDGEWAA------  284 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEE-ES-TTEEEEEEEEE-SSTT----EEEEEEE--EEEEEEEE-ETTEEEE------
T ss_pred             HhhcccccCeEEEEECCCCcEeeEE-ecCCCCCceEEEEecCCCC-cc-ceEEEEeccceEEEEEEcCCCCeee------
Confidence                   357999999999888755 3332223456777766431 11 22222234445555433 3221110      


Q ss_pred             CCcceeeee--------------ccCCcccceEEEEEeecCCCCCCCcceEEE-eeeCCCcEEEeEec
Q 037555          245 STANIIIRF--------------DPFACHVAAVNRMAWKTHEKPKNSRTMQLA-SCGADNTVRVFQVN  297 (298)
Q Consensus       245 ~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iw~~~  297 (298)
                         +.+..+              ..+..-..-|++|..|.|.       ++|. ++=.+|.||.||++
T Consensus       285 ---~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-------rfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  285 ---EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-------RFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             ---EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--------EEEEEETTTTEEEEEE-S
T ss_pred             ---eEEEECCCcccCcccccccccccccCCCceEeEEEccCC-------CEEEEEcccCCcEEEEecC
Confidence               111111              1112224568999999998       5554 55579999999985

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.32  E-value=0.036  Score=48.56  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=72.3

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ....-+.-+.-+..-++-+....+.|||.+.+..... ..+ .....|..+.|....   +++.+++.+-.+.|.+|.-.
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEcc
Confidence            3444444444343333333445699999998764331 133 357889999998643   23566666667888888542


Q ss_pred             ecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      .    ..+......+..+..+. ...|+ .+|.+..|.++|       .+++.+|  +.+.|++
T Consensus       105 R----~dy~~~~p~w~~i~~i~-i~~~T~h~Igds~Wl~~G-------~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  105 R----YDYTNKGPSWAPIRKID-ISSHTPHPIGDSIWLKDG-------TLVVGSG--NQLFVFD  154 (631)
T ss_pred             c----hhhhcCCcccceeEEEE-eecCCCCCccceeEecCC-------eEEEEeC--CEEEEEC
Confidence            1    11122223345555554 23344 689999999999       5555443  4566665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.32  E-value=0.051  Score=42.49  Aligned_cols=154  Identities=15%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             cEEEEEEcCCCCEEEEEe---CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE-
Q 037555          105 TVTQIRFSHDDNLLLSVS---RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA-  180 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd-  180 (298)
                      .+.+.+++++++.++...   ....+.++.....        ....+  ....+....|++++...+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence            688999999999776655   3344555543321        11111  223677888999988777777666667664 


Q ss_pred             ccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCC
Q 037555          181 VENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA  257 (298)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (298)
                      ...+...............|..+.++|++     ..++.-.   .++.|.+--+.....-..       ......+....
T Consensus        95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG-----~RvA~v~~~~~~~~v~va~V~r~~~g~~-------~~l~~~~~~~~  162 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGLRGRITALRVSPDG-----TRVAVVVEDGGGGRVYVAGVVRDGDGVP-------RRLTGPRRVAP  162 (253)
T ss_pred             cCCCcceeEEecccccCCceEEEEECCCC-----cEEEEEEecCCCCeEEEEEEEeCCCCCc-------ceeccceEecc
Confidence            23332221111222222389999999999     4444433   357777776653311100       01111111112


Q ss_pred             cccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      .....+.++.|.++.       .+++.+..
T Consensus       163 ~~~~~v~~v~W~~~~-------~L~V~~~~  185 (253)
T PF10647_consen  163 PLLSDVTDVAWSDDS-------TLVVLGRS  185 (253)
T ss_pred             cccCcceeeeecCCC-------EEEEEeCC
Confidence            235688999999998       56555543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.29  E-value=0.06  Score=45.25  Aligned_cols=139  Identities=7%  Similarity=-0.046  Sum_probs=74.5

Q ss_pred             CceEEEEEEcCCceeeeccccccccEE-EEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-Eee-ccC-Cc
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVT-QIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQE-AHK-RI  154 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~-~~  154 (298)
                      .++.|..+|..+|+.+-.+......+. ...-+|  .+..++.++.+|.+..+|..++...   +.... ... .+. ..
T Consensus       168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~---W~~~~~~~~~~~~~~~  244 (394)
T PRK11138        168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI---WQQRISQPTGATEIDR  244 (394)
T ss_pred             CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh---heeccccCCCccchhc
Confidence            377888888888887655442111000 000112  1235666777888888887664311   11000 000 000 00


Q ss_pred             eEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          155 IWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       155 v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ...+.-+|  .+..++.++.+|.+..+|..+++.+... .+   .. ...+..  .+     ..++.++.+|.+..+|..
T Consensus       245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~---~~-~~~~~~--~~-----~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-EY---GS-VNDFAV--DG-----GRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-cC---CC-ccCcEE--EC-----CEEEEEcCCCeEEEEECC
Confidence            11111122  3557777888999999999998765522 11   11 112222  22     467778889999999988


Q ss_pred             ec
Q 037555          233 VN  234 (298)
Q Consensus       233 ~~  234 (298)
                      ++
T Consensus       313 tG  314 (394)
T PRK11138        313 GG  314 (394)
T ss_pred             CC
Confidence            76

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0022  Score=57.89  Aligned_cols=106  Identities=15%  Similarity=0.247  Sum_probs=74.5

Q ss_pred             CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec
Q 037555          114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL  193 (298)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  193 (298)
                      .+-.++.|+..|.+-..|+...      ..+...-....++|++++|+.+|..++.|-.+|.|.+||+..++...   .+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~---~i  168 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK---VI  168 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee---ee
Confidence            4557889999999998888742      11122223346799999999999999999999999999999988877   44


Q ss_pred             CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          194 PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ..+..+.+++-+....  .++..++++...|.  +|.+.
T Consensus       169 ~e~~ap~t~vi~v~~t--~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  169 TEHGAPVTGVIFVGRT--SQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eecCCccceEEEEEEe--CCCcEEEEccCCCc--eEEEE
Confidence            4455555555444322  11147888877776  56554

>PHA02713 hypothetical protein; Provisional

Probab=97.18  E-value=0.047  Score=48.03  Aligned_cols=67  Identities=3%  Similarity=0.086  Sum_probs=35.6

Q ss_pred             CCCEEEeEeccC-CCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCCC-----eEEEEEeccC
Q 037555           67 QGKLVASSCKAQ-STAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRT  135 (298)
Q Consensus        67 ~~~~l~~~~~~~-~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  135 (298)
                      ++..++.||.+. ...-..+..||..+..-.  ..+.........+.  -++++.+.||.++     .+..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            566777776421 111246788888765432  22221111122222  2677778887754     4778887753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.05  E-value=0.11  Score=41.24  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=87.5

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      ..++.|+.|.     ++| |.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-..........
T Consensus         5 ~~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGT-----EDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEE-----CCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence            3577888883     477 8999983222222222 233499999999887777765 5999999988643322100000


Q ss_pred             -------EEeeccCCceEEEE--EccCCCEEEEeeCCCeEEEEEccCCcc-e-eeeeecCCCCCceEEEEEeeccccCCc
Q 037555          146 -------ARQEAHKRIIWSCS--WNPFGHEFATGSRDKTVKIWAVENKSS-V-KQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       146 -------~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                             .........+...+  -...+...+......+|.+|....... . ..+..+. ....+.+++|.+       
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~-------  148 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG-------  148 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC-------
Confidence                   00111222344444  112333444444456899888876421 1 2222343 457889999995       


Q ss_pred             cEEEEeecCCcEEEEEeeecc
Q 037555          215 GFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      ..++.|..+ ...+.|+.++.
T Consensus       149 ~~i~v~~~~-~f~~idl~~~~  168 (275)
T PF00780_consen  149 NKICVGTSK-GFYLIDLNTGS  168 (275)
T ss_pred             CEEEEEeCC-ceEEEecCCCC
Confidence            467777644 47888888553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.075  Score=41.27  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCE-EEeEeccCCCCceEEEEEEcCCceeeeccccccc--cEEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 037555           59 LFSLCCDHQGKL-VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL--TVTQIRFSHDDNLLLSVSRD-----RQFSVF  130 (298)
Q Consensus        59 v~~~~~s~~~~~-l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----g~i~iw  130 (298)
                      -..++|+|..+. ++.+-.    ......++|.+..+...++...+.  .--.=.|+|||.+|...-.|     |.|-||
T Consensus        70 ~Hgi~~~p~~~ravafARr----PGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          70 GHGIAFHPALPRAVAFARR----PGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             cCCeecCCCCcceEEEEec----CCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            346777775543 333321    233567788877665544332111  11123589999998876543     789999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      |.+..      ...+.++..|.-.-..+.|.+||+.++.+.
T Consensus       146 d~r~~------fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         146 DAREG------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ecccc------cceecccccCCcCcceeEEecCCcEEEEeC
Confidence            99853      455667777777778899999999988765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.01  E-value=0.0032  Score=34.56  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA   95 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~   95 (298)
                      ...|.+++|+|...+||.+     ..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~-----t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALG-----TEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEE-----ECCCeEEEEEC-CCcC
Confidence            4569999999999999999     56999999998 4544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.081  Score=42.51  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=88.0

Q ss_pred             CceEEEEEcCCCCEEEeEec----cC--CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555           57 NELFSLCCDHQGKLVASSCK----AQ--STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV  129 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~----~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  129 (298)
                      ...+.+...|+|.+-++...    +.  ...-|.|+.++. .+..+..+..+-..-+.++|+||++.|..+.. .+.|.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            34567778888887666533    01  112344555554 45666666666666789999999987777654 578888


Q ss_pred             EEeccCCCCccce-eeeEEeeccCCceEEEEEccCCCEEEEeeCCC-eEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          130 FAIQRTGTGEIDY-QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-TVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       130 wd~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      |++.... ..... ..........+..-.++...+|++.+++-.+| .|.+|+.. ++.+..+ .++  ...+++++|-.
T Consensus       190 ~~~d~~~-g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP--~~~~t~~~FgG  264 (307)
T COG3386         190 YDLDPAT-GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI-KLP--VKRPTNPAFGG  264 (307)
T ss_pred             EecCccc-CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-ECC--CCCCccceEeC
Confidence            8876311 11111 11222222345556677888888886555554 89999988 6766633 222  25677777765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.99  E-value=0.13  Score=41.32  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      ++++|+|.++++.+..+..  +....+..+|+++.+++++          ..-.|.+||..+       ..+...+.-..
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-------L~~~~EI~iP~   87 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-------LSPTGEIEIPP   87 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-------TEEEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-------CcccceEecCC
Confidence            5799999999998877763  2334467899999888753          334689999887       33333222111


Q ss_pred             -------CceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          153 -------RIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       153 -------~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                             .....+.++.+++++++..  -...|.|.|+...+...++ ..++      |.-.-|.+.    .-+.+-|.|
T Consensus        88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PG------C~~iyP~~~----~~F~~lC~D  156 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPG------CWLIYPSGN----RGFSMLCGD  156 (342)
T ss_dssp             S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTS------EEEEEEEET----TEEEEEETT
T ss_pred             cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCC------EEEEEecCC----CceEEEecC
Confidence                   1123456777888776653  3456888898888776644 2221      333345442    457788889


Q ss_pred             CcEEEEEeeec
Q 037555          224 GVIELWSISVN  234 (298)
Q Consensus       224 g~i~vwd~~~~  234 (298)
                      |.+.-..+...
T Consensus       157 Gsl~~v~Ld~~  167 (342)
T PF06433_consen  157 GSLLTVTLDAD  167 (342)
T ss_dssp             SCEEEEEETST
T ss_pred             CceEEEEECCC
Confidence            99999988743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.99  E-value=0.15  Score=45.35  Aligned_cols=124  Identities=12%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             ceEEEEEcc--CCCEEEEeeCCCeEEEEEccC-------C----c------ceeeeeecCCCCCceEEEEEe--eccccC
Q 037555          154 IIWSCSWNP--FGHEFATGSRDKTVKIWAVEN-------K----S------SVKQILALPPFNSSVTALSWV--GLDRQK  212 (298)
Q Consensus       154 ~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~-------~----~------~~~~~~~~~~~~~~v~~~~~~--~~~~~~  212 (298)
                      .|+.|....  ....|+.+.+||.|.+|.++.       .    .      .+.+...+. .....++++++  ...   
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~---  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS---  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc---
Confidence            455555544  446899999999999997642       0    0      001111222 34578899998  555   


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                        .+||+++....|.||-+.......          ....   -..|...|-+|+|-++.....+. .+|++++-.|.+.
T Consensus       178 --rlIAVSsNs~~VTVFaf~l~~~r~----------~~~~---s~~~~hNIP~VSFl~~~~d~~G~-v~v~a~dI~G~v~  241 (717)
T PF08728_consen  178 --RLIAVSSNSQEVTVFAFALVDERF----------YHVP---SHQHSHNIPNVSFLDDDLDPNGH-VKVVATDISGEVW  241 (717)
T ss_pred             --eEEEEecCCceEEEEEEecccccc----------cccc---ccccccCCCeeEeecCCCCCccc-eEEEEEeccCcEE
Confidence              688888888888888776531110          0000   11267789999998876211111 3788899999999


Q ss_pred             EeEec
Q 037555          293 VFQVN  297 (298)
Q Consensus       293 iw~~~  297 (298)
                      +|++.
T Consensus       242 ~~~I~  246 (717)
T PF08728_consen  242 TFKIK  246 (717)
T ss_pred             EEEEE
Confidence            98873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.0043  Score=34.04  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      ....|..++|+|...+||.++.+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34569999999999999999999999999983

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.96  E-value=0.19  Score=42.43  Aligned_cols=154  Identities=9%  Similarity=0.028  Sum_probs=78.2

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-------cccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-------LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      +.|.++.|+.+..+++..      .||.+++||+. |+....       .......+....+..+|-.++  ..++.+.+
T Consensus        81 ~~iv~~~wt~~e~LvvV~------~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~  151 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQ------SDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYV  151 (410)
T ss_pred             CCEEEEEECCCCeEEEEE------cCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEE
Confidence            788899998876666665      48999999986 333111       111112222233333553333  33444433


Q ss_pred             EEeccCCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          130 FAIQRTGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      ..  ....... .+.....       ..+........++.+....+....++.+.+.+-...+.      +. ..+++..
T Consensus       152 v~--n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~-~~~~i~~  221 (410)
T PF04841_consen  152 VN--NIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ID-SDGPIIK  221 (410)
T ss_pred             Ee--Cccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------cc-CCCCeEE
Confidence            32  2111000 0000000       00111000022344444455555555666444332211      21 3468999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |+.+|++     ++++.-..+|.+.+....-.
T Consensus       222 iavSpng-----~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  222 IAVSPNG-----KFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             EEECCCC-----CEEEEEECCCCEEEEECccc
Confidence            9999999     78999889999988865443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.95  E-value=0.12  Score=40.06  Aligned_cols=188  Identities=11%  Similarity=0.070  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .-.+.|..+|.++-+.+.   .....|+.+|+.+++......- ..---..++.. ++++..-.=.++...+||..+   
T Consensus        47 TQGL~~~~~g~LyESTG~---yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t---  119 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGL---YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT---  119 (264)
T ss_dssp             EEEEEEEETTEEEEEECS---TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT---
T ss_pred             CccEEecCCCEEEEeCCC---CCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc---
Confidence            447888778888888776   4567999999999987654331 11122233333 233444444588999999987   


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEeeccccCCc
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGLDRQKNH  214 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~  214 (298)
                          .+.+..+.. .+.=+.++  .++..|+.......|+++|..+.+....+.. .....   .++-+.|. ++     
T Consensus       120 ----l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-~~~g~pv~~LNELE~i-~G-----  185 (264)
T PF05096_consen  120 ----LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV-TDNGRPVSNLNELEYI-NG-----  185 (264)
T ss_dssp             ----TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE--EETTEE---EEEEEEE-TT-----
T ss_pred             ----ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE-EECCEECCCcEeEEEE-cC-----
Confidence                555666543 34557776  4566777777778899999887766554322 11222   23444454 22     


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec--cC----------CcccceEEEEEeecCCCCCCCcceEE
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD--PF----------ACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      .+.+-.-....|...|..++.             ....+.  .+          .....-.+.|++.|...      .++
T Consensus       186 ~IyANVW~td~I~~Idp~tG~-------------V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~  246 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGK-------------VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLF  246 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-B-------------EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEE
T ss_pred             EEEEEeCCCCeEEEEeCCCCe-------------EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEE
Confidence            333333344455555555552             211110  00          01145688999999873      677


Q ss_pred             Eeee
Q 037555          283 ASCG  286 (298)
Q Consensus       283 ~s~~  286 (298)
                      +||=
T Consensus       247 vTGK  250 (264)
T PF05096_consen  247 VTGK  250 (264)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            7763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.90  E-value=0.16  Score=45.16  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCC---------CCc----cceeeeEEeeccCCceEEEEEc--cCCCEE
Q 037555          105 TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTG---------TGE----IDYQLIARQEAHKRIIWSCSWN--PFGHEF  167 (298)
Q Consensus       105 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~---------~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~~~l  167 (298)
                      .|+.+....  +...|+.|..||.|.+|..+.--         ...    ...++...+. ....+++++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355554443  44589999999999999763210         000    0011122222 34578999998  788899


Q ss_pred             EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc-EEEEeecCCcEEEEEee
Q 037555          168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG-FLAVGMESGVIELWSIS  232 (298)
Q Consensus       168 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~g~~dg~i~vwd~~  232 (298)
                      |+++....|.||-............-..+...|.+|+|.++..++.+. .+++++-.|.+.+|++.
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            999988888888765432211110111256678999999987544443 77778889999999984

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.89  E-value=0.24  Score=42.61  Aligned_cols=163  Identities=17%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEe-ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC----CCEEEEEeCCC
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSC-KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD----DNLLLSVSRDR  125 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg  125 (298)
                      .+...-.+|..++|. ||+.++-.. .   -.+|.+++=|   .+.+..|.    .|..+.|.|-    -..+++.-...
T Consensus        14 aL~qAiHPvhGlaWT-DGkqVvLT~L~---l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkk   82 (671)
T PF15390_consen   14 ALHQAIHPVHGLAWT-DGKQVVLTDLQ---LHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKK   82 (671)
T ss_pred             HHHhhhccccceEec-CCCEEEEEeee---eeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccc
Confidence            344445688899997 555544441 1   0112222111   12333343    5889999994    23566666678


Q ss_pred             eEEEEEeccCCCCccceeeeEEeecc---CCc--eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAH---KRI--IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      .|.+|.+.......  .+.+.....+   .-+  -..+.|+|....|++-.....-.+++++....... ..+. ..+.|
T Consensus        83 hVtVWqL~~s~~e~--~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~-~~G~I  158 (671)
T PF15390_consen   83 HVTVWQLCPSTTER--NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIK-TSGLI  158 (671)
T ss_pred             eEEEEEeccCcccc--ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-Eecc-CCceE
Confidence            99999997543322  1112111111   111  24577999988888777655555666654433221 1343 56889


Q ss_pred             EEEEEeeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555          201 TALSWVGLDRQKNHGFLAVG-MESGVIELWSISV  233 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~  233 (298)
                      .|.+|.++|     ..|+.+ +..=.-++||-..
T Consensus       159 hCACWT~DG-----~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  159 HCACWTKDG-----QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEecCcC-----CEEEEEeCCeEEEEEecCch
Confidence            999999999     445444 3333567887543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.87  E-value=0.33  Score=43.91  Aligned_cols=86  Identities=17%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC-CCcc----ceeeeEEe--------eccCCceEEEEEccC---CCE
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG-TGEI----DYQLIARQ--------EAHKRIIWSCSWNPF---GHE  166 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~----~~~~~~~~--------~~~~~~v~~~~~~~~---~~~  166 (298)
                      ...|..+.++|+|.+++..|..|...+.=.+..+ .+..    .....+..        ..+...|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3468899999999999998876654443322211 1100    00011111        123457899999995   589


Q ss_pred             EEEeeCCCeEEEEEccCCccee
Q 037555          167 FATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      |++-..|+++|+||+.......
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCe
Confidence            9999999999999998654433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.81  E-value=0.0079  Score=44.80  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEE-EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVT-QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      +..++.|     +.+|.|++|+..... ....+......|. .+.-..++.+..+++.||.|+.|+...       .+.+
T Consensus        70 ~~~~~vG-----~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-------~k~~  137 (238)
T KOG2444|consen   70 SAKLMVG-----TSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-------NKVL  137 (238)
T ss_pred             CceEEee-----cccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-------Ccee
Confidence            3456667     459999999886221 1111222222222 222233566888999999999999886       4444


Q ss_pred             EEeeccC-CceEEEEEccCCCEEEEe--eCCCeEEEEEccC
Q 037555          146 ARQEAHK-RIIWSCSWNPFGHEFATG--SRDKTVKIWAVEN  183 (298)
Q Consensus       146 ~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~  183 (298)
                      .....|. .++.....+..++.++.+  |.|..++.|++..
T Consensus       138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4445555 444444444455556555  5666666666654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.79  E-value=0.27  Score=41.70  Aligned_cols=122  Identities=13%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCC-----------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDR-----------  125 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------  125 (298)
                      .+..+.++|+|+++|.+-..++++...|+++|+.+++.+.. +..  .....+.|.++++.|+-...+.           
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34467899999999987655445667899999999977643 221  1123399999988766554332           


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---C-CeEEEEEccCC
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---D-KTVKIWAVENK  184 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~~wd~~~~  184 (298)
                      .|+.|.+.+....   -.++............+..++++++++..+.   + ..+.+.|+...
T Consensus       203 ~v~~~~~gt~~~~---d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  203 QVYRHKLGTPQSE---DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEECCCChHh---CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            3666666553211   1123222222222567888999998776443   2 35778888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.16  Score=39.01  Aligned_cols=123  Identities=7%  Similarity=-0.063  Sum_probs=76.9

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      ..+++.|+     -.+.+.--|..+|+..-.-. -...+.+-+.- -|++++.|...|.+++.+..++.       ....
T Consensus        23 kT~v~igS-----Hs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~   88 (354)
T KOG4649|consen   23 KTLVVIGS-----HSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWN   88 (354)
T ss_pred             ceEEEEec-----CCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heee
Confidence            45666664     36778888888887654321 12223332222 46789999999999999998843       2322


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      +..-...-......+++..+..++.|+..+..|.++..++.   ..+...+...+-+..|
T Consensus        89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAP  145 (354)
T ss_pred             eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecC
Confidence            22222111233456789999999999999999999887766   4443333333334444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.75  E-value=0.19  Score=39.39  Aligned_cols=150  Identities=14%  Similarity=0.127  Sum_probs=88.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe-ccCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI-QRTG  136 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~  136 (298)
                      .+.+.+++++++.+|.....  .....++++....  ....+. ....+..-.|++++...+....+...+++.. ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~--~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEG--DGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEc--CCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            68899999999988877511  1245666665542  222221 2236788899999887777776666666642 2211


Q ss_pred             CCccceeeeEE-eeccCCceEEEEEccCCCEEEEee---CCCeEEEEEccCCcce------eeeeecCCCCCceEEEEEe
Q 037555          137 TGEIDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGS---RDKTVKIWAVENKSSV------KQILALPPFNSSVTALSWV  206 (298)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~------~~~~~~~~~~~~v~~~~~~  206 (298)
                           ...... .......|..+.++|||..++...   .++.|.+--+.....-      ..+.........+..+.|.
T Consensus       100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence                 111111 111112899999999998887766   3467776654321111      1111222234678999999


Q ss_pred             eccccCCccEEEEeec
Q 037555          207 GLDRQKNHGFLAVGME  222 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~  222 (298)
                      +++     .+++.+..
T Consensus       175 ~~~-----~L~V~~~~  185 (253)
T PF10647_consen  175 DDS-----TLVVLGRS  185 (253)
T ss_pred             CCC-----EEEEEeCC
Confidence            998     45555543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.25  Score=39.76  Aligned_cols=193  Identities=6%  Similarity=0.018  Sum_probs=103.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----c-ccccEEEEEEcCCCCEEEEEeC-------
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----S-HSLTVTQIRFSHDDNLLLSVSR-------  123 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~-------  123 (298)
                      .+.+.++..-..+..|+++       +.-+.+++.+++..+..+.    + -....+.+...|+|.+.++...       
T Consensus        65 p~~~~~~~~~d~~g~Lv~~-------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~  137 (307)
T COG3386          65 PGGFSSGALIDAGGRLIAC-------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS  137 (307)
T ss_pred             CCCcccceeecCCCeEEEE-------ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence            3344555544455566666       4557777776555422221    1 1234567888999887665443       


Q ss_pred             --CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccC--Ccce--eeeeecCCC
Q 037555          124 --DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVEN--KSSV--KQILALPPF  196 (298)
Q Consensus       124 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~--~~~~--~~~~~~~~~  196 (298)
                        ...=.+|.+...      ....+.+..+-..-+.|+|+|+++.|+.+.. .+.|.-|++..  ....  .....+...
T Consensus       138 ~~~~~G~lyr~~p~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~  211 (307)
T COG3386         138 EERPTGSLYRVDPD------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE  211 (307)
T ss_pred             ccCCcceEEEEcCC------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence              011134444421      2233333443445578999999988877765 47788887763  1111  101122223


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      .+..-.++...++     .+.+++...| .|.+|+.. +             +.+..+.   .....+++++|--..   
T Consensus       212 ~G~PDG~~vDadG-----~lw~~a~~~g~~v~~~~pd-G-------------~l~~~i~---lP~~~~t~~~FgG~~---  266 (307)
T COG3386         212 PGLPDGMAVDADG-----NLWVAAVWGGGRVVRFNPD-G-------------KLLGEIK---LPVKRPTNPAFGGPD---  266 (307)
T ss_pred             CCCCCceEEeCCC-----CEEEecccCCceEEEECCC-C-------------cEEEEEE---CCCCCCccceEeCCC---
Confidence            3444455666655     4554444443 88888887 4             3444332   233667778886431   


Q ss_pred             CCcceEEEeeeCC
Q 037555          276 NSRTMQLASCGAD  288 (298)
Q Consensus       276 ~~~~~~l~s~~~d  288 (298)
                        ...+++|+...
T Consensus       267 --~~~L~iTs~~~  277 (307)
T COG3386         267 --LNTLYITSARS  277 (307)
T ss_pred             --cCEEEEEecCC
Confidence              01566666554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.66  E-value=0.25  Score=39.59  Aligned_cols=159  Identities=18%  Similarity=0.217  Sum_probs=80.6

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +-.+.+..+.-+++|+++++++.     .....-|+.....-...-+.-...|..+.|.|++.+.+.+ ..|.|++=+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~-----G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSR-----GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETT-----SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred             CCcceeEeEEECCCCcEEEEECc-----ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence            44577889999999999999843     4445567754211111112245789999999998776644 88888887722


Q ss_pred             cCCCCccceee-eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          134 RTGTGEIDYQL-IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       134 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      ...  .. ... +.......-.+..++|.+++...++|+. |. .+...+.++...............+.+.|.+..   
T Consensus       216 ~~~--~~-w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~---  287 (302)
T PF14870_consen  216 DDG--ET-WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD---  287 (302)
T ss_dssp             TEE--EE-E---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETT---
T ss_pred             CCc--cc-cccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCC---
Confidence            110  00 110 1111122334789999988877776664 43 334556666655333333455678899998765   


Q ss_pred             CccEEEEeecCCcEEEE
Q 037555          213 NHGFLAVGMESGVIELW  229 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vw  229 (298)
                        .-++.| .+|.|--|
T Consensus       288 --~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  288 --KGFVLG-QDGVLLRY  301 (302)
T ss_dssp             --EEEEE--STTEEEEE
T ss_pred             --ceEEEC-CCcEEEEe
Confidence              344444 67776544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.65  E-value=0.15  Score=43.82  Aligned_cols=152  Identities=13%  Similarity=0.210  Sum_probs=86.7

Q ss_pred             cccEEEEEEcCCCCEEE-EEe--CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC----CEEEEeeCCCe
Q 037555          103 SLTVTQIRFSHDDNLLL-SVS--RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG----HEFATGSRDKT  175 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~  175 (298)
                      -.++..++|. ||+.++ +.-  .+|.+++=|          ...+..    -..|..+.|.|-+    ..+++......
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd----------s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkh   83 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD----------SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKH   83 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC----------ccEeec----cceeeeeeecCcccCCCCceEEEeccce
Confidence            3478899998 565443 321  122222211          222333    2448899999843    35666677789


Q ss_pred             EEEEEccCC-----cceee-eeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcc
Q 037555          176 VKIWAVENK-----SSVKQ-ILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTAN  248 (298)
Q Consensus       176 i~~wd~~~~-----~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~  248 (298)
                      |.+|.+...     +.+.. ...+ ....--.....|+|..     .+|++-.....-.+++++....           .
T Consensus        84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-----~iL~VLT~~dvSV~~sV~~d~s-----------r  147 (671)
T PF15390_consen   84 VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-----AILTVLTARDVSVLPSVHCDSS-----------R  147 (671)
T ss_pred             EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-----ceEEEEecCceeEeeeeeeCCc-----------e
Confidence            999988621     11110 0011 0112224578899987     5666655544445667765421           1


Q ss_pred             eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ....+    ...+.|.+.+|.+||+      +++++.|..=.-+|||
T Consensus       148 VkaDi----~~~G~IhCACWT~DG~------RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  148 VKADI----KTSGLIHCACWTKDGQ------RLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEec----cCCceEEEEEecCcCC------EEEEEeCCeEEEEEec
Confidence            11222    2568899999999994      5566666655667887

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.029  Score=51.40  Aligned_cols=149  Identities=11%  Similarity=0.117  Sum_probs=93.0

Q ss_pred             EEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-----eccc------cccccEEEEEEcCCCC-
Q 037555           50 HKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQ------SHSLTVTQIRFSHDDN-  116 (298)
Q Consensus        50 ~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~-  116 (298)
                      ..+.-|. -+|..+...+|++..++...   ..+-.|..||+++-..-     .-+.      .......++.|.|.-. 
T Consensus        93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~t---sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~  169 (1405)
T KOG3630|consen   93 LTFKVEKEIPIVIFVCFHDATDSVVVST---SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL  169 (1405)
T ss_pred             cceeeeccccceEEEeccCCceEEEEEe---cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc
Confidence            4444444 35667777788777666544   33558899998753211     1111      1233456788888543 


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-  195 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-  195 (298)
                      ..+++..|+.|++..+....      ..+.. .......++++|+|.|..++.|...|++.-|-..-. ....+...+- 
T Consensus       170 n~av~l~dlsl~V~~~~~~~------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~  241 (1405)
T KOG3630|consen  170 NSAVDLSDLSLRVKSTKQLA------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVE  241 (1405)
T ss_pred             hhhhhccccchhhhhhhhhh------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcC
Confidence            45677789999988776421      11111 234566899999999999999999999998865432 1121111111 


Q ss_pred             CCCceEEEEEeecc
Q 037555          196 FNSSVTALSWVGLD  209 (298)
Q Consensus       196 ~~~~v~~~~~~~~~  209 (298)
                      ....|.+++|....
T Consensus       242 e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  242 ENYRVLSVTWLSTQ  255 (1405)
T ss_pred             CCcceeEEEEecce
Confidence            14679999998876

>PRK10115 protease 2; Provisional

Probab=96.52  E-value=0.61  Score=42.33  Aligned_cols=119  Identities=12%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVF  130 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw  130 (298)
                      -.+..+.++|+|++|+.+....+++...|++.|+.+++.+...-....  ..++|.+|++.|+-...+      ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            347788999999999988655556667899999988864322211221  469999998866555432      356666


Q ss_pred             EeccCCCCccceeeeEEeeccCCceE-EEEEccCCCEEEEeeC---CCeEEEEEcc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSR---DKTVKIWAVE  182 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~~wd~~  182 (298)
                      ++.+....   ..++..  ....... .+..+.++++++..+.   ++.+.+++..
T Consensus       205 ~lgt~~~~---d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        205 TIGTPASQ---DELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             ECCCChhH---CeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            66654211   122222  2222222 3333447776655443   4568888853

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.50  E-value=0.32  Score=42.98  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCEEEeEecc-CCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCCe-----EEEE
Q 037555           59 LFSLCCDHQGKLVASSCKA-QSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-----FSVF  130 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~-~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iw  130 (298)
                      -.+++.. ++...++||.+ +...-..+..||..+.+-..  .+...........+  +|.+.++|+.||.     +-.|
T Consensus       325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence            3344443 45778888775 33344678889987665332  22222222222222  7888899999865     5566


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEc-cCCCEEEEeeCCC------eEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWN-PFGHEFATGSRDK------TVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      |..+..     +..+.....   ........ -++...++|+.++      ++..||..+..-.. +......... ..+
T Consensus       402 Dp~~~~-----W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~-~~~M~~~R~~-~g~  471 (571)
T KOG4441|consen  402 DPVTNK-----WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL-IAPMNTRRSG-FGV  471 (571)
T ss_pred             cCCCCc-----ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee-cCCccccccc-ceE
Confidence            665533     333332222   12222222 2567777777554      46788887755322 1112111111 123


Q ss_pred             EEeeccccCCccEEEEeecCC-----cEEEEEeeec
Q 037555          204 SWVGLDRQKNHGFLAVGMESG-----VIELWSISVN  234 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~  234 (298)
                      +... +     .+.+.|+.|+     +|..||..+.
T Consensus       472 a~~~-~-----~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  472 AVLN-G-----KIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             EEEC-C-----EEEEECCccCCCccceEEEEcCCCC
Confidence            3322 2     5777777665     2555666553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.48  E-value=0.21  Score=44.05  Aligned_cols=128  Identities=13%  Similarity=0.187  Sum_probs=79.6

Q ss_pred             CCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEc--CCCCEEEEE
Q 037555           46 WPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFS--HDDNLLLSV  121 (298)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~  121 (298)
                      |....++...-..+.-+.-+.-++..++-     .....+.|||...+.....  | ...+.|.++.|.  |+++.+++.
T Consensus        19 w~~t~~~~T~i~~~~li~gss~~k~a~V~-----~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaV   92 (631)
T PF12234_consen   19 WLLTSTFETGISNPSLISGSSIKKIAVVD-----SSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAV   92 (631)
T ss_pred             EEEEEEEecCCCCcceEeecccCcEEEEE-----CCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEE
Confidence            44444554444555666666545444443     2366899999988764332  3 357789999996  588999999


Q ss_pred             eCCCeEEEEEeccCC---CCccceeeeEEe--eccC-CceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555          122 SRDRQFSVFAIQRTG---TGEIDYQLIARQ--EAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~---~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      +..+.|.++.-....   ..+ .+..+..+  ..+. .+|.+..|.++|..++.++  +.+.++|-.
T Consensus        93 Gf~~~v~l~~Q~R~dy~~~~p-~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen   93 GFPHHVLLYTQLRYDYTNKGP-SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             EcCcEEEEEEccchhhhcCCc-ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            999999998643111   111 12233322  2233 5789999999886655443  567777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.44  E-value=0.26  Score=37.25  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=83.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVF  130 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw  130 (298)
                      ....+.-..+|+|++++-.-.+.+    --.+.++.|-... + +..+...-.--..++|+.+.+.+ ++-+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            344566667899998543321110    0123445554431 1 11111112223568888776655 445667788778


Q ss_pred             EeccCCCCccceeeeEEeec----cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          131 AIQRTGTGEIDYQLIARQEA----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      |.+.........+.+..++.    ....--.++..-+|++++++-..++|...|..+++.+.++   .-....|++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei---klPt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI---KLPTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE---EcCCCceEEEEec
Confidence            85443322111222222222    1111234555667888899989999999999999988854   3336779999997


Q ss_pred             ec
Q 037555          207 GL  208 (298)
Q Consensus       207 ~~  208 (298)
                      ..
T Consensus       263 Gk  264 (310)
T KOG4499|consen  263 GK  264 (310)
T ss_pred             CC
Confidence            65

>PHA02713 hypothetical protein; Provisional

Probab=96.42  E-value=0.11  Score=45.88  Aligned_cols=152  Identities=5%  Similarity=-0.027  Sum_probs=74.3

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC-------------------
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-------------------  125 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------  125 (298)
                      +|++.+.||.++...-..+..||..+.+-  +..+.........+.+  ++++.+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            46677777653222234688899876533  2222211111122222  677777777653                   


Q ss_pred             ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCcceeeeeecCC
Q 037555          126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~  195 (298)
                          .+..||..+..     +..+.......... +++. -++...+.|+.+      ..+..||..+......+..++.
T Consensus       429 ~~~~~ve~YDP~td~-----W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~  501 (557)
T PHA02713        429 HSSNKVIRYDTVNNI-----WETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES  501 (557)
T ss_pred             cccceEEEECCCCCe-----EeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence                35667766532     33332222111111 1222 246666667654      2367888886222222223332


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCC--cEEEEEeeec
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESG--VIELWSISVN  234 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~  234 (298)
                      .... .+++.. ++     .+.++|+.++  .+-.||..+.
T Consensus       502 ~r~~-~~~~~~-~~-----~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        502 RLSA-LHTILH-DN-----TIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             cccc-ceeEEE-CC-----EEEEEeeecceeehhhcCcccc
Confidence            2222 223322 23     6788888787  5666666654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.42  E-value=0.55  Score=40.76  Aligned_cols=102  Identities=10%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             CceEEEEEEcCCceeeeccccccc------cEE--EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSL------TVT--QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .++.|.-.|..+++.+-.+.....      .+.  .+... ++..++.++.++.|.-+|.++++       .+-......
T Consensus        69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~-------~~W~~~~~~  140 (488)
T cd00216          69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK-------QVWKFGNND  140 (488)
T ss_pred             CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC-------EeeeecCCC
Confidence            478999999999987765542221      010  11111 22577788889999999988743       222222111


Q ss_pred             C--ceEEEEEcc--CCCEEEEee---------CCCeEEEEEccCCcceeee
Q 037555          153 R--IIWSCSWNP--FGHEFATGS---------RDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       153 ~--~v~~~~~~~--~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~  190 (298)
                      .  .-..+.-+|  .+..++.++         .+|.|..+|..+++..-..
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            1  000111111  124455554         3678999999988876643

The alignment model contains an 8-bladed beta-propeller.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.36  E-value=0.0024  Score=56.62  Aligned_cols=125  Identities=16%  Similarity=0.126  Sum_probs=73.2

Q ss_pred             CCCceEEEEEcC---CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEE-----------EEcCCCCEEEE
Q 037555           55 HGNELFSLCCDH---QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI-----------RFSHDDNLLLS  120 (298)
Q Consensus        55 h~~~v~~~~~s~---~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~  120 (298)
                      ....+.-+.|.|   +..++..+     ..++.|++...++... ..+.+|...+..+           ..+|||..++.
T Consensus       179 ~gs~~~~V~wcp~~~~~~~ic~~-----~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~  252 (1283)
T KOG1916|consen  179 YGSDPQLVSWCPIAVNKVYICYG-----LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAW  252 (1283)
T ss_pred             CCCCcceeeecccccccceeeec-----cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEE
Confidence            334455555655   45455555     4467777776654322 4455576655443           36899999999


Q ss_pred             EeCCCeEEEEEeccCCCCccceeeeEEeeccC-CceEEEEEccCC---------CEEEEeeC-CCeEEEEEccCCcce
Q 037555          121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFG---------HEFATGSR-DKTVKIWAVENKSSV  187 (298)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~~~-dg~i~~wd~~~~~~~  187 (298)
                      +..||.+++|.+.-.+...  ..+....+.|. .+-.|.-|+.+.         .+++++++ +..+++|.....+++
T Consensus       253 a~~dG~v~f~Qiyi~g~~~--~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  253 AISDGSVGFYQIYITGKIV--HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eecCCccceeeeeeecccc--HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9999999999876432211  34455556666 333333343222         23445544 455899987766654

>PHA03098 kelch-like protein; Provisional

Probab=96.35  E-value=0.66  Score=40.86  Aligned_cols=110  Identities=5%  Similarity=-0.038  Sum_probs=53.3

Q ss_pred             CCCEEEeEeccCCC-CceEEEEEEcCCceeeec--cccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCC
Q 037555           67 QGKLVASSCKAQST-AAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTG  138 (298)
Q Consensus        67 ~~~~l~~~~~~~~~-~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  138 (298)
                      ++..++.||.+... ....+..||..+.+....  +.........+.+  ++.+++.|+.+     ..+..||..+..  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~--  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK--  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence            45667777653211 123678888876654321  1111111222222  56777777765     346667766532  


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCc
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKS  185 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~  185 (298)
                         +.....+...... .+++. -++..++.|+.+      ..+..||..+.+
T Consensus       370 ---W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        370 ---WREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             ---eeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence               2222222111111 11222 246666666632      357888987654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.28  Score=36.38  Aligned_cols=106  Identities=8%  Similarity=0.023  Sum_probs=54.8

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeee
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      +|.++.+.+.   .....|++||+.+++.+.+..-....+..=-...-+..+ .-.=.+|.-..+|.++       .+.+
T Consensus        55 ~g~i~esTG~---yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-------~~~l  124 (262)
T COG3823          55 DGHILESTGL---YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-------LEEL  124 (262)
T ss_pred             CCEEEEeccc---cccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-------hhhh
Confidence            4566776655   456789999999888765433111111111111112222 2223467777888776       3334


Q ss_pred             EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555          146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  185 (298)
                      ..+. .++.=+.++-  ++..|..++...+++.-|.++..
T Consensus       125 g~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         125 GRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             cccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence            3333 2333344443  34445555555566666665533

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.29  E-value=0.49  Score=38.77  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee---eec----cccccccEEEEEEcCC----CCEEEEEeCC--
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA---MGR----LQSHSLTVTQIRFSHD----DNLLLSVSRD--  124 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---~~~----~~~~~~~v~~~~~~~~----~~~l~~~~~d--  124 (298)
                      ..++|+|.|+|++|++-      ..|.|++++.. +..   +..    ..........++++|+    +.+.++.+..  
T Consensus         3 ~P~~~a~~pdG~l~v~e------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~   75 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE   75 (331)
T ss_dssp             SEEEEEEETTSCEEEEE------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred             CceEEEEeCCCcEEEEe------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence            46799999999888865      37999999933 332   211    2335567899999994    3333433321  


Q ss_pred             ------CeEEEEEeccCCCCccce-eeeEEeec---cCCceEEEEEccCCCEEEEeeC
Q 037555          125 ------RQFSVFAIQRTGTGEIDY-QLIARQEA---HKRIIWSCSWNPFGHEFATGSR  172 (298)
Q Consensus       125 ------g~i~iwd~~~~~~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~  172 (298)
                            ..|.-|............ .++..+..   ....-..|.|.|++.++++.+.
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence                  234444443321111001 12222222   2334567999999976666553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.19  E-value=0.64  Score=39.12  Aligned_cols=154  Identities=8%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-----CCCEEEEeeCCCeEEEEEccCCcc---
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-----FGHEFATGSRDKTVKIWAVENKSS---  186 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~---  186 (298)
                      ...|++|+..|.++||+........  ...+.+ ..-..+|..+..-+     +...||+ =.-.++.+|.+.....   
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~--~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQP--EDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCC--ccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            3589999999999999985433221  112222 22356787776543     2234444 3356788888743211   


Q ss_pred             ------eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555          187 ------VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV  260 (298)
Q Consensus       187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (298)
                            +..+... ..+....+++.-|.+...+..+|.+=+.||.+.+|+-+..             .....+. .....
T Consensus       113 ~g~~~~L~~~yeh-~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-------------~f~~~lp-~~llP  177 (418)
T PF14727_consen  113 HGNQYQLELIYEH-SLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-------------AFSRFLP-DFLLP  177 (418)
T ss_pred             cCcEEEEEEEEEE-ecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-------------EEEEEcC-CCCCC
Confidence                  1111111 1345567788888775554578999999999999997643             1111111 11233


Q ss_pred             ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++   +++.+..       ..|++++.+..|..|..+
T Consensus       178 gP---l~Y~~~t-------Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  178 GP---LCYCPRT-------DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             cC---eEEeecC-------CEEEEecCceeEEEecHH
Confidence            33   5677777       788888888888877653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.12  E-value=0.62  Score=38.93  Aligned_cols=128  Identities=12%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCEEEeEeccC---------------CCCceEEEEEEcCCceeeecccccc--ccEEEEEEcCCC--CE-E
Q 037555           59 LFSLCCDHQGKLVASSCKAQ---------------STAAAEIWLWEVGSWKAMGRLQSHS--LTVTQIRFSHDD--NL-L  118 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~---------------~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~-l  118 (298)
                      -+.+.|.|..+.++++....               .....++.+||+.+.+.++++.-..  .....+.|..+.  .+ +
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            44566677667777764421               0135789999999999999887432  346678886643  33 4


Q ss_pred             EEEeCCCeEEEEEeccCCCCccceeeeEEee-----------------ccCCceEEEEEccCCCEEEEee-CCCeEEEEE
Q 037555          119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-----------------AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWA  180 (298)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd  180 (298)
                      +.+....+|..|--.....-.  .+.+..+.                 ....-|+.|..|.|.++|+... ..|.|+.||
T Consensus       263 vg~aLss~i~~~~k~~~g~W~--a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD  340 (461)
T PF05694_consen  263 VGCALSSSIWRFYKDDDGEWA--AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD  340 (461)
T ss_dssp             EEEE--EEEEEEEE-ETTEEE--EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred             EEEeccceEEEEEEcCCCCee--eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence            444445555555432211100  11111111                 1134578999999999987776 589999999


Q ss_pred             ccCCccee
Q 037555          181 VENKSSVK  188 (298)
Q Consensus       181 ~~~~~~~~  188 (298)
                      +......+
T Consensus       341 ISDP~~Pk  348 (461)
T PF05694_consen  341 ISDPFNPK  348 (461)
T ss_dssp             -SSTTS-E
T ss_pred             cCCCCCCc
Confidence            98765544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.10  E-value=0.51  Score=41.76  Aligned_cols=153  Identities=12%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             cCCCCEEEeEeccC-CCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccC
Q 037555           65 DHQGKLVASSCKAQ-STAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRT  135 (298)
Q Consensus        65 s~~~~~l~~~~~~~-~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~  135 (298)
                      +..+.+++.||..+ ...-..+..||..+++..  ..+. ....-.++++. ++.+.++|+.|      ..+..||....
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence            33466777776632 122357888998876433  2233 22223344444 56788888888      34667777654


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-----EEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-----VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      .     +..+........... ++.. +|...++|+.||.     +-.||.++.+-..    ...............-+ 
T Consensus       360 ~-----W~~~a~M~~~R~~~~-v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~----va~m~~~r~~~gv~~~~-  427 (571)
T KOG4441|consen  360 Q-----WTPVAPMNTKRSDFG-VAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP----VAPMLTRRSGHGVAVLG-  427 (571)
T ss_pred             c-----eeccCCccCccccce-eEEE-CCEEEEEeccccccccccEEEecCCCCcccc----cCCCCcceeeeEEEEEC-
Confidence            3     333332222222211 2111 5778888888864     7778877654321    11122222333332222 


Q ss_pred             cCCccEEEEeecCC------cEEEEEeeec
Q 037555          211 QKNHGFLAVGMESG------VIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~dg------~i~vwd~~~~  234 (298)
                         +.+.++|+.++      ++..||..+.
T Consensus       428 ---g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  428 ---GKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             ---CEEEEEcCcCCCccccceEEEEcCCCC
Confidence               15677777554      4556666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.96  E-value=0.79  Score=38.19  Aligned_cols=154  Identities=11%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCEEEeEeccC------CCCce-EEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQ------STAAA-EIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~------~~~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      .....|+|.++|+++++-..+.      ....+ .|.+++-..  ++.  ...+...-.....+++.+++ +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567899999999887753110      00122 677776432  332  23343333456889999888 444 44443


Q ss_pred             eEEEEEeccCCCCc-cceeeeEEeec----cCCceEEEEEccCCCEEEEeeCC-------------------CeEEEEEc
Q 037555          126 QFSVFAIQRTGTGE-IDYQLIARQEA----HKRIIWSCSWNPFGHEFATGSRD-------------------KTVKIWAV  181 (298)
Q Consensus       126 ~i~iwd~~~~~~~~-~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~~wd~  181 (298)
                      ..++.+........ ....++..+..    +......++|.|++.+.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            33333443211111 10112222222    12447789999998766654421                   33444454


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      ...+. . + ...++ .....++|+|.+     .++++-.
T Consensus       172 dg~~~-e-~-~a~G~-rnp~Gl~~d~~G-----~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-R-V-VAHGF-QNPYGHSVDSWG-----DVFFCDN  202 (367)
T ss_pred             CCCeE-E-E-EecCc-CCCccceECCCC-----CEEEEcc
Confidence            44332 1 1 11222 335689999987     5665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.90  E-value=1.4  Score=40.54  Aligned_cols=159  Identities=11%  Similarity=0.063  Sum_probs=101.9

Q ss_pred             eEEEEEcCC-CCEEEeEec----cC-CCCceEEEEEEcCCceeeeccccc--cccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           59 LFSLCCDHQ-GKLVASSCK----AQ-STAAAEIWLWEVGSWKAMGRLQSH--SLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        59 v~~~~~s~~-~~~l~~~~~----~~-~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      |.++.|..| ++++++|..    +. ....|.|.|+....++.++.+..+  .+.+.++..- +|+++|.-  ...|++|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLy  853 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLY  853 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEE
Confidence            555567766 667776632    11 124578888888764444433222  2344444322 56665544  5689999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ++..       .+.++....+..++..+...-.+..+++|.--+++.+...+..+.......-..++...+++.+-.+. 
T Consensus       854 e~t~-------~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d-  925 (1096)
T KOG1897|consen  854 EWTT-------ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD-  925 (1096)
T ss_pred             Eccc-------cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-
Confidence            9886       33455556677888888888889999999988888877766555322222333466778888887765 


Q ss_pred             cCCccEEEEeecCCcEEEEEeee
Q 037555          211 QKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                           .++.+..+|.+++-...+
T Consensus       926 -----~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  926 -----TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             -----eEEeecccccEEEEEecC
Confidence                 556666788888776653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.78  E-value=0.74  Score=36.48  Aligned_cols=132  Identities=13%  Similarity=0.060  Sum_probs=73.5

Q ss_pred             CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-
Q 037555          114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-  192 (298)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  192 (298)
                      .++.|+.|+.+| +.+++....      .......  +...|..+...|+-+.|++-+ |+.++++++........... 
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~------~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDP------SKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCC------ccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence            577899999998 888888321      1112221  223399999999888877776 49999999986554331100 


Q ss_pred             ----------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555          193 ----------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA  262 (298)
Q Consensus       193 ----------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (298)
                                .......+...+  ......+...|+++ ....|.+|..........        ...+.+.    -...
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~--~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~--------~~~ke~~----lp~~  140 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFA--VNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS--------KLLKEIS----LPDP  140 (275)
T ss_pred             cccccccccccccccCCeeEEe--eccccccceEEEEE-ECCEEEEEEEECCccccc--------ceeEEEE----cCCC
Confidence                      001122233333  11111112344444 455899998876421100        1222222    3467


Q ss_pred             EEEEEeec
Q 037555          263 VNRMAWKT  270 (298)
Q Consensus       263 v~~~~~~~  270 (298)
                      +.+++|.+
T Consensus       141 ~~~i~~~~  148 (275)
T PF00780_consen  141 PSSIAFLG  148 (275)
T ss_pred             cEEEEEeC
Confidence            88888884

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.75  E-value=0.24  Score=45.84  Aligned_cols=145  Identities=14%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             ccEEEEEEcCCCCEEEEE--eCCCeEEEEEeccCCCCccceeeeEEee------ccCCceEEEEEccCC-CEEEEeeCCC
Q 037555          104 LTVTQIRFSHDDNLLLSV--SRDRQFSVFAIQRTGTGEIDYQLIARQE------AHKRIIWSCSWNPFG-HEFATGSRDK  174 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg  174 (298)
                      .++..+...+|+...++.  +.+-.|..||++.-.....  .....+.      .......++.|+|.- ...++...|+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~--~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl  178 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY--ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL  178 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh--hhccccccccchhccccccccccccCCccchhhhhcccc
Confidence            355666667776654443  3344788999876432210  0111111      122344677888843 3456677899


Q ss_pred             eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555          175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD  254 (298)
Q Consensus       175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
                      .|++..+.......  ..++ .....++++|+|.|     ..++.|-..|.+.-|...-..              ...+.
T Consensus       179 sl~V~~~~~~~~~v--~s~p-~t~~~Tav~WSprG-----KQl~iG~nnGt~vQy~P~lei--------------k~~ip  236 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNV--TSFP-VTNSQTAVLWSPRG-----KQLFIGRNNGTEVQYEPSLEI--------------KSEIP  236 (1405)
T ss_pred             chhhhhhhhhhhhh--cccC-cccceeeEEecccc-----ceeeEecCCCeEEEeecccce--------------eeccc
Confidence            99988776543322  1233 55678999999999     789999999999888764321              11111


Q ss_pred             cCCc-ccceEEEEEeecCC
Q 037555          255 PFAC-HVAAVNRMAWKTHE  272 (298)
Q Consensus       255 ~~~~-~~~~v~~~~~~~~~  272 (298)
                      ...- ....|.+|+|-...
T Consensus       237 ~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  237 EPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             CCCcCCCcceeEEEEecce
Confidence            0101 14678999998766

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.70  E-value=0.54  Score=39.27  Aligned_cols=139  Identities=15%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555          107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS  186 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  186 (298)
                      +.+-|...++.++ +...|.+.=|-+.....    -.++.......++|.++.|++|.+.+|+--.+..|-+++....+.
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpnd----DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPND----DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS  100 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCCC----CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence            4455554333333 33445555565554332    122333344567999999999999999999999999998854333


Q ss_pred             eeee-eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555          187 VKQI-LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR  265 (298)
Q Consensus       187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  265 (298)
                      .... ...+.....|....|....      -++.-...| +-+|......            +.++.   .+.|...|+-
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~------e~A~i~~~G-~e~y~v~pek------------rslRl---Vks~~~nvnW  158 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSST------EIAFITDQG-IEFYQVLPEK------------RSLRL---VKSHNLNVNW  158 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCe------eEEEEecCC-eEEEEEchhh------------hhhhh---hhhcccCccE
Confidence            2211 1222334558899998864      345444444 6677665432            22222   3357888888


Q ss_pred             EEeecCC
Q 037555          266 MAWKTHE  272 (298)
Q Consensus       266 ~~~~~~~  272 (298)
                      ..|.++.
T Consensus       159 y~yc~et  165 (657)
T KOG2377|consen  159 YMYCPET  165 (657)
T ss_pred             EEEcccc
Confidence            8898887

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.62  E-value=1.2  Score=40.48  Aligned_cols=79  Identities=14%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccC----------Ccceeeeeec--------CCCCCceEEEEEeeccccCC
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN----------KSSVKQILAL--------PPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .-.|..+.++|+|.+++..+..|. .|..+..          ++.......+        ......|..+.|+|.+.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--S  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC--C
Confidence            346889999999999998887664 3333321          1111111111        12345788999999852  2


Q ss_pred             ccEEEEeecCCcEEEEEeee
Q 037555          214 HGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +..|+.-..|+.+++||+..
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCeEEEEecCCEEEEEecCC
Confidence            25778888899999999863

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.61  E-value=0.56  Score=39.81  Aligned_cols=145  Identities=11%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC--------CEEEEEeCCCeEEEEEeccCCC
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD--------NLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .+..+|..-+    .+...++-.|++.|+.+.....|...  -+.|.|+.        +.|+..+ +..|.-.|.+..+.
T Consensus       477 ~dssli~~dg----~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN  549 (776)
T COG5167         477 NDSSLIYLDG----GERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN  549 (776)
T ss_pred             CCcceEEecC----CCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence            3444555443    34567888899999999888877665  47777743        2344444 44454456554321


Q ss_pred             CccceeeeEEeeccCCceEEEEEcc----CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNP----FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                            .+.. ......++.-.|+.    ...++++++..|-|++||--..+...   .+++....|..+..+.+|    
T Consensus       550 ------Ki~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta~G----  615 (776)
T COG5167         550 ------KIKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTANG----  615 (776)
T ss_pred             ------ceee-eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhh---cCcccccceeeeEeecCC----
Confidence                  1111 11122223333332    44689999999999999965544333   567788889999999988    


Q ss_pred             ccEEEEeecCCcEEEEEeee
Q 037555          214 HGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~  233 (298)
                       .++++.|. ..+-+.|++-
T Consensus       616 -k~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         616 -KHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             -cEEEEeec-ceEEEEeccc
Confidence             56666554 5677777753

>PHA02790 Kelch-like protein; Provisional

Probab=95.58  E-value=1.4  Score=38.25  Aligned_cols=110  Identities=5%  Similarity=-0.044  Sum_probs=53.5

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccce
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~  142 (298)
                      ++.++++||.+....-..+..||..+++...  .+.........+.  -++.+.+.|+.++  .+..||.....     +
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~-----W  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA-----W  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe-----E
Confidence            4556677764321122467788887654322  2221111122222  3677777777543  46677765322     3


Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEeeCCC---eEEEEEccCCc
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK---TVKIWAVENKS  185 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~  185 (298)
                      ..+..+....... +++ .-++...+.|+.++   .+..||.++.+
T Consensus       344 ~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        344 VNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             EECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence            3332222111111 122 22566777777543   46778877644

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.49  E-value=0.084  Score=28.11  Aligned_cols=31  Identities=10%  Similarity=0.069  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCC---CEEEeEeccCCCCceEEEEEEcCC
Q 037555           57 NELFSLCCDHQG---KLVASSCKAQSTAAAEIWLWEVGS   92 (298)
Q Consensus        57 ~~v~~~~~s~~~---~~l~~~~~~~~~~d~~i~vw~~~~   92 (298)
                      +.|.++.|+|..   .+|+.+     ...+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~-----E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWA-----EHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEE-----ccCCeEEEEEccc
Confidence            468999999854   488877     4578999999985

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.39  E-value=0.079  Score=28.23  Aligned_cols=31  Identities=16%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             CceEEEEEccCC---CEEEEeeCCCeEEEEEccC
Q 037555          153 RIIWSCSWNPFG---HEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       153 ~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~  183 (298)
                      +.|.++.|+|..   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   4888888889999999995

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.37  E-value=0.015  Score=51.89  Aligned_cols=146  Identities=9%  Similarity=0.079  Sum_probs=80.7

Q ss_pred             ceEEEEEEcCCcee-eeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           82 AAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        82 d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      .+.+++-+..+... -..+++..+.|..+.|.... ..+.  -.-|.+.+|++..-...-...-.+.........+.-+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            34455555543221 12356777888888885421 1222  33467889998763322111122233333344556666


Q ss_pred             Ecc---CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc------cCCccEEEEeecCCcEEEEE
Q 037555          160 WNP---FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR------QKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       160 ~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~l~~g~~dg~i~vwd  230 (298)
                      |.|   +.-++..+-.++.|++........ .   .+..|...+..++|...+.      +++|..++.++.||.++.|.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            665   556666777788888877655332 1   2223555544444332221      22338999999999999888


Q ss_pred             eee
Q 037555          231 ISV  233 (298)
Q Consensus       231 ~~~  233 (298)
                      +.-
T Consensus       264 iyi  266 (1283)
T KOG1916|consen  264 IYI  266 (1283)
T ss_pred             eee
Confidence            754

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.51  Score=39.43  Aligned_cols=105  Identities=6%  Similarity=0.039  Sum_probs=69.4

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee----ccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG----RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      ...++|.++.||+|.+.||+--     .+..|.+.+....+...    ..+..+..|....|+.+ .-+|..+..| +-+
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR-----~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~  136 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQR-----TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEF  136 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEe-----cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEE
Confidence            3456999999999999999984     48899999985433322    23345566899999866 4444444333 556


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      |.+...      .+.++..+.|+-.|.-..|.++.+.++-++
T Consensus       137 y~v~pe------krslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  137 YQVLPE------KRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             EEEchh------hhhhhhhhhcccCccEEEEccccceEeeec
Confidence            655432      233445566777788888888776554443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.19  E-value=1.6  Score=36.69  Aligned_cols=89  Identities=13%  Similarity=0.105  Sum_probs=55.1

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEE---EEcC-----Cceeeeccc---ccc--ccEEEEEEcC-----------CCC
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWL---WEVG-----SWKAMGRLQ---SHS--LTVTQIRFSH-----------DDN  116 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~v---w~~~-----~~~~~~~~~---~~~--~~v~~~~~~~-----------~~~  116 (298)
                      .++.+|++..||.+.     .+..+.+   |+..     .+.......   .++  ..|+++.|-|           |..
T Consensus         6 ~isls~~~d~laiA~-----~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~   80 (415)
T PF14655_consen    6 SISLSPDGDLLAIAR-----GQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT   80 (415)
T ss_pred             eEEecCCCCEEEEEc-----CCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE
Confidence            567789999999984     3444443   5331     111111111   122  4677766644           356


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      .+++|..+|.|++|...        +.++....-|..+|..+.+..
T Consensus        81 ~I~VG~ssG~vrfyte~--------G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   81 CIAVGTSSGYVRFYTEN--------GVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             EEEEEecccEEEEEecc--------chHHHHHhcCccceEEEEecc
Confidence            89999999999999975        444555556777887777653

>PHA03098 kelch-like protein; Provisional

Probab=95.13  E-value=2.1  Score=37.69  Aligned_cols=151  Identities=11%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccCCCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRTGTG  138 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~  138 (298)
                      ++.+++.||.+....-..+..||..+.+-..  .+...... .+++. -++++++.|+.+      ..+..||+.+..  
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK--  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe--
Confidence            5677777865322223467788887654322  12111111 11222 256677777632      357788876532  


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                         +..+......... .++. ..++..++.|+.+        ..+.+||..+.+-.. +.... ....-.+++.. ++ 
T Consensus       418 ---W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~-~~r~~~~~~~~-~~-  488 (534)
T PHA03098        418 ---WSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLN-FPRINASLCIF-NN-  488 (534)
T ss_pred             ---eeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceee-CCCCC-cccccceEEEE-CC-
Confidence               2222221111111 1222 2245566666542        237888887654322 11111 11111122222 33 


Q ss_pred             cCCccEEEEeecC-----CcEEEEEeeec
Q 037555          211 QKNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                          .+++.|+.+     ..|.+||..+.
T Consensus       489 ----~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        489 ----KIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ----EEEEEcCCcCCcccceeEEEeCCCC
Confidence                566666643     46777777654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.12  E-value=0.21  Score=36.53  Aligned_cols=31  Identities=16%  Similarity=0.369  Sum_probs=25.4

Q ss_pred             CceEEEEEccCC------CEEEEeeCCCeEEEEEccC
Q 037555          153 RIIWSCSWNPFG------HEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       153 ~~v~~~~~~~~~------~~l~~~~~dg~i~~wd~~~  183 (298)
                      ..+..++|+|.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999955      3788889999999997654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.94  E-value=1.4  Score=34.69  Aligned_cols=124  Identities=15%  Similarity=0.187  Sum_probs=76.7

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeEE
Q 037555           99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTVK  177 (298)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (298)
                      +.+-...+.++.|+|+.+.|++......-.++=-..       +..+....-. -.....+.+..++++.++--.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-------GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-------GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecC-------CceEEEecccccCChhHeEEecCCEEEEEehhcceEE
Confidence            455556699999999999888877666555553333       3444433211 11234566766666666555677888


Q ss_pred             EEEccCCccee-------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          178 IWAVENKSSVK-------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       178 ~wd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ++.+.......       .+......+.....++|.|..     ..|+.+-+..-+.||.+...
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-----~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-----HRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-----ceEEEEEccCCcEEEEEecC
Confidence            77666542221       111222225567899999988     67777777777888877643

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.89  E-value=0.98  Score=37.99  Aligned_cols=81  Identities=17%  Similarity=0.248  Sum_probs=51.6

Q ss_pred             eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc---------------CC
Q 037555          149 EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ---------------KN  213 (298)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~~  213 (298)
                      ......+.++..+|.+++.++...-|+|.++|+..+..++   ..++..+.  .+.|......               ..
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr---mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR---MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh---hhccCccc--eEEEEEeecccccccccccccCCCCcc
Confidence            3445668899999999888888778999999999887766   44443332  2222221100               00


Q ss_pred             cc-EEEEeecCCcEEEEEeeec
Q 037555          214 HG-FLAVGMESGVIELWSISVN  234 (298)
Q Consensus       214 ~~-~l~~g~~dg~i~vwd~~~~  234 (298)
                      .. +++-+-.-|.|-||.++.+
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCC
Confidence            12 3334556788899988765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.65  E-value=2.2  Score=35.38  Aligned_cols=154  Identities=10%  Similarity=0.062  Sum_probs=76.1

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (298)
                      +|.++|+.|+.++..  .....+.+.|+.+++..+.-.+-........++|+.+.++-......|+-.|+.+.+      
T Consensus        42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e------  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE------  113 (386)
T ss_dssp             -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--------
T ss_pred             CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc------
Confidence            457788776665532  336789999999888765433322223356677888877666566788888888732      


Q ss_pred             eeeEEeeccCCceEEEEEc--cCCCEEEEeeC----------------------CCeEEEEEccCCcceeeeeecCCCCC
Q 037555          143 QLIARQEAHKRIIWSCSWN--PFGHEFATGSR----------------------DKTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                       ....+......+-...|.  .++..++-.-.                      ...|..-|+++++...    +.....
T Consensus       114 -~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~----v~~~~~  188 (386)
T PF14583_consen  114 -ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV----VFEDTD  188 (386)
T ss_dssp             -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE----EEEESS
T ss_pred             -EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE----EEecCc
Confidence             223333334444444453  34444432211                      1235555666655432    222455


Q ss_pred             ceEEEEEeeccccCCccEEEEeecC---C-cEEEEEeee
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMES---G-VIELWSISV  233 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~d---g-~i~vwd~~~  233 (298)
                      .+..+.|+|..+    .+|+-|.+.   . .-+||-+++
T Consensus       189 wlgH~~fsP~dp----~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  189 WLGHVQFSPTDP----TLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             -EEEEEEETTEE----EEEEEEE-S-TTTSS-SEEEEET
T ss_pred             cccCcccCCCCC----CEEEEeccCCcceeceEEEEEEc
Confidence            677889999875    566655432   2 125666554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=1.6  Score=41.41  Aligned_cols=167  Identities=14%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             CCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEE--------cCCCCEEEEEeCCC
Q 037555           55 HGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF--------SHDDNLLLSVSRDR  125 (298)
Q Consensus        55 h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg  125 (298)
                      |...-..+-+-|. ++.=++.       |+.+.+|+.+++.....+.+....|..+..        -|.=++++..+.--
T Consensus        77 ~~~~~~~mGiFpeI~RaWiTi-------Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~  149 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWITI-------DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPV  149 (1311)
T ss_pred             CcceeeeeccchhhcceEEEe-------CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccc
Confidence            4444444444454 4444444       899999999997777777777777766653        22334444444455


Q ss_pred             eEEEEEeccCCCCccce--eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE--EEccCC---c-c-----------
Q 037555          126 QFSVFAIQRTGTGEIDY--QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI--WAVENK---S-S-----------  186 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--wd~~~~---~-~-----------  186 (298)
                      .|.++-+..........  .....+....-.|.++....+|+.|++|-+ |.|.-  |....+   + +           
T Consensus       150 ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls  228 (1311)
T KOG1900|consen  150 EIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLS  228 (1311)
T ss_pred             eEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHH
Confidence            67777665432211101  111222233456888887777877776654 43332  111110   0 0           


Q ss_pred             --eeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          187 --VKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       187 --~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                        +..+..+. .+..+|..++.....     .++.+-++.|.|.+|++...
T Consensus       229 ~lvPs~~~~~~~~~dpI~qi~ID~SR-----~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  229 SLVPSLLSVPGSSKDPIRQITIDNSR-----NILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             HhhhhhhcCCCCCCCcceeeEecccc-----ceeeeeccCceEEEEEccCC
Confidence              01112233 456789999988766     79999999999999999763

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=3.3  Score=37.14  Aligned_cols=51  Identities=18%  Similarity=0.347  Sum_probs=38.9

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      -..|+|++.. |+.+..+.-....+..+.|+.+. .|+....+|++++|++..
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            4578999985 77777655444478899999654 677778899999999863

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.57  E-value=1.8  Score=34.16  Aligned_cols=140  Identities=11%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      ...+..+.++  +++...+..+.-+++.|+.++....    .+..+. -.+.-.++..  .|++.+++..|.-+.+.|+.
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvs  156 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVS  156 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECC
Confidence            4556677775  4577777788889999999875422    222222 1233444444  48899998866668888998


Q ss_pred             CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555          183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA  262 (298)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (298)
                      +.......-........-..++.+.       ++-..+..|+-+.+-|+.+...+          ..+....    -...
T Consensus       157 dpssP~lagrya~~~~d~~~v~ISG-------n~AYvA~~d~GL~ivDVSnp~sP----------vli~~~n----~g~g  215 (370)
T COG5276         157 DPSSPQLAGRYALPGGDTHDVAISG-------NYAYVAWRDGGLTIVDVSNPHSP----------VLIGSYN----TGPG  215 (370)
T ss_pred             CCCCceeeeeeccCCCCceeEEEec-------CeEEEEEeCCCeEEEEccCCCCC----------eEEEEEe----cCCc
Confidence            7765543323333333345666665       46667778888999999876432          2222221    1225


Q ss_pred             EEEEEeecCC
Q 037555          263 VNRMAWKTHE  272 (298)
Q Consensus       263 v~~~~~~~~~  272 (298)
                      +.++..+++.
T Consensus       216 ~~sv~vsdnr  225 (370)
T COG5276         216 TYSVSVSDNR  225 (370)
T ss_pred             eEEEEecCCe
Confidence            6777777765

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=0.65  Score=43.86  Aligned_cols=154  Identities=8%  Similarity=0.160  Sum_probs=79.8

Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE--------EccCCCEEEEeeCCCeEEEEEccCCcceeee---
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS--------WNPFGHEFATGSRDKTVKIWAVENKSSVKQI---  190 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---  190 (298)
                      +.|..+.+|+.++...       ...+.+-...|..+.        |.|.=+++++.+.--.|.++-+.-.+.....   
T Consensus        96 TiDn~L~lWny~~~~e-------~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNE-------LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             EeCCeEEEEEcCCCCc-------cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence            4588999999998432       333333334444443        2232234444443444555544322111100   


Q ss_pred             ---eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee--ecc------cccccCCCCCCcceeeeeccCC-c
Q 037555          191 ---LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS--VNR------TNDVSTPAPSTANIIIRFDPFA-C  258 (298)
Q Consensus       191 ---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~--~~~------~~~~~~~~~~~~~~~~~~~~~~-~  258 (298)
                         ..+.-.+..|.++....+|     .++ .++.||  .+|.+.  ...      ..........-...+..+..+. .
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nG-----RIF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~  240 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENG-----RIF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS  240 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCC-----cEE-EeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence               1222235568888866666     444 455666  445442  111      0000000000001111122233 5


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +..+|..|......       ..|.+-++.|+|++|++.
T Consensus       241 ~~dpI~qi~ID~SR-------~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  241 SKDPIRQITIDNSR-------NILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             CCCcceeeEecccc-------ceeeeeccCceEEEEEcc
Confidence            67899999998887       899999999999999974

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.47  E-value=1.3  Score=37.70  Aligned_cols=145  Identities=17%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             CCCEEE-EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC--------CEEEEeeCCCeEEEEEccCC
Q 037555          114 DDNLLL-SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG--------HEFATGSRDKTVKIWAVENK  184 (298)
Q Consensus       114 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~~wd~~~~  184 (298)
                      +.++|+ .++....++-.|+..       ++.+.....|...  -+.|.|..        +.|+-.| +..|.-.|.+-.
T Consensus       478 dssli~~dg~~~~kLykmDIEr-------GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~  547 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIER-------GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR  547 (776)
T ss_pred             CcceEEecCCCcccceeeeccc-------ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence            444443 455556677777776       6667777766654  45666643        3444444 444444455532


Q ss_pred             c-ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceE
Q 037555          185 S-SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV  263 (298)
Q Consensus       185 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  263 (298)
                      . .+.   .. .....++.-.|+.... ....++++++..|.|++||.-..+...                .+.+....|
T Consensus       548 gNKi~---v~-esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKt----------------alP~lG~aI  606 (776)
T COG5167         548 GNKIK---VV-ESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKT----------------ALPGLGDAI  606 (776)
T ss_pred             CCcee---ee-eehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhh----------------cCcccccce
Confidence            2 221   11 1222233333333221 111599999999999999975432111                145677889


Q ss_pred             EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..+..+.+|+      ..|+||  ...|.+-|++
T Consensus       607 k~idvta~Gk------~ilaTC--k~yllL~d~~  632 (776)
T COG5167         607 KHIDVTANGK------HILATC--KNYLLLTDVP  632 (776)
T ss_pred             eeeEeecCCc------EEEEee--cceEEEEecc
Confidence            9999999984      455555  3456666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.39  E-value=1.9  Score=33.66  Aligned_cols=156  Identities=6%  Similarity=0.025  Sum_probs=79.2

Q ss_pred             eeeccc-cccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEe
Q 037555           95 AMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATG  170 (298)
Q Consensus        95 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~  170 (298)
                      .+.++. ....-...+.|..++.++-+.+.-|  .|+.+|+.+++       ......-. .----.++.. ++..+.-.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~-------~~~~~~l~~~~FgEGit~~-~d~l~qLT  106 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK-------VLQSVPLPPRYFGEGITIL-GDKLYQLT  106 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS-------EEEEEE-TTT--EEEEEEE-TTEEEEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc-------EEEEEECCccccceeEEEE-CCEEEEEE
Confidence            344444 1233456788877888888888776  68888887632       22222211 1111233333 23333334


Q ss_pred             eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555          171 SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII  250 (298)
Q Consensus       171 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  250 (298)
                      -.++...+||..+.+.+..+ .   ....-+.++  .++     ..|+.......|+++|..+.+........ ....++
T Consensus       107 Wk~~~~f~yd~~tl~~~~~~-~---y~~EGWGLt--~dg-----~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv  174 (264)
T PF05096_consen  107 WKEGTGFVYDPNTLKKIGTF-P---YPGEGWGLT--SDG-----KRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPV  174 (264)
T ss_dssp             SSSSEEEEEETTTTEEEEEE-E----SSS--EEE--ECS-----SCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE-
T ss_pred             ecCCeEEEEccccceEEEEE-e---cCCcceEEE--cCC-----CEEEEECCccceEEECCcccceEEEEEEE-ECCEEC
Confidence            46789999999988777644 2   234556666  334     45666666778999987654322111110 111333


Q ss_pred             eeeccCCcccceEEEEEeec
Q 037555          251 IRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~  270 (298)
                      ..++++.-..+.|.+=.|..
T Consensus       175 ~~LNELE~i~G~IyANVW~t  194 (264)
T PF05096_consen  175 SNLNELEYINGKIYANVWQT  194 (264)
T ss_dssp             --EEEEEEETTEEEEEETTS
T ss_pred             CCcEeEEEEcCEEEEEeCCC
Confidence            34444444555565555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.23  E-value=2.6  Score=34.60  Aligned_cols=157  Identities=13%  Similarity=0.050  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ...+.++.+.|++.+++++.      .|.+..-.-..++.-. ....-...++++.+.++++.++++ ..|.+.+=..+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence            45688999999988887773      4555432111122111 122345678999999998876665 467665322222


Q ss_pred             CCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          135 TGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      +..    +.....- ......+..+.+.+++..+++ +.+|.+. .....++...............+.+.|...+    
T Consensus       245 G~s----W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~----  314 (334)
T PRK13684        245 LES----WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE----  314 (334)
T ss_pred             CCc----cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC----
Confidence            111    2211110 112235788889987765554 4567554 3444444443221112233457778877665    


Q ss_pred             ccEEEEeecCCcEEEEEe
Q 037555          214 HGFLAVGMESGVIELWSI  231 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~  231 (298)
                       ..++ .+..|.|..|+-
T Consensus       315 -~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        315 -KGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             -ceEE-ECCCceEEEecC
Confidence             4554 456787776653

>PRK13684 Ycf48-like protein; Provisional

Probab=93.96  E-value=3  Score=34.28  Aligned_cols=156  Identities=13%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      ...+.++.+.|++.+++++ ..|.+..- .+....   .+..+  .......++.+.+.++++.++++ ..|.+++=...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~---tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQT---AWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCC---eEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            4578899999987665554 45555421 111100   02222  12344678899999988876665 45766532333


Q ss_pred             CCcceeeeeecC-C-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555          183 NKSSVKQILALP-P-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV  260 (298)
Q Consensus       183 ~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (298)
                      .+...... ..+ . ....+.++.+.+.+     ..++ ++.+|.|. .....+             +....+.....-.
T Consensus       244 ~G~sW~~~-~~~~~~~~~~l~~v~~~~~~-----~~~~-~G~~G~v~-~S~d~G-------------~tW~~~~~~~~~~  302 (334)
T PRK13684        244 DLESWSKP-IIPEITNGYGYLDLAYRTPG-----EIWA-GGGNGTLL-VSKDGG-------------KTWEKDPVGEEVP  302 (334)
T ss_pred             CCCccccc-cCCccccccceeeEEEcCCC-----CEEE-EcCCCeEE-EeCCCC-------------CCCeECCcCCCCC
Confidence            33332211 111 0 12347788888866     4444 44567554 333322             1111111001122


Q ss_pred             ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ...+.+.|..++       ..++ .+..|.|--|+
T Consensus       303 ~~~~~~~~~~~~-------~~~~-~G~~G~il~~~  329 (334)
T PRK13684        303 SNFYKIVFLDPE-------KGFV-LGQRGVLLRYV  329 (334)
T ss_pred             cceEEEEEeCCC-------ceEE-ECCCceEEEec
Confidence            467778887665       4544 55577776654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.92  E-value=0.0076  Score=50.00  Aligned_cols=147  Identities=17%  Similarity=0.254  Sum_probs=96.9

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEcc
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVE  182 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~  182 (298)
                      .......|-|.+.-++.++.+..+..||-..        +...... ..+....++|..++..++ .+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--------q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--------QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhc--------ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            3344567888777788888888999998552        2222222 345566788888776554 44567889999998


Q ss_pred             CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555          183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA  262 (298)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (298)
                      +..... + .+ +....-.=+.|++..     ..++.|...|.+.|++..+.+....                ...|...
T Consensus       106 ~eytqq-L-E~-gg~~s~sll~wsKg~-----~el~ig~~~gn~viynhgtsR~iiv----------------~Gkh~RR  161 (615)
T KOG2247|consen  106 SEYTQQ-L-ES-GGTSSKSLLAWSKGT-----PELVIGNNAGNIVIYNHGTSRRIIV----------------MGKHQRR  161 (615)
T ss_pred             hhhHHH-H-hc-cCcchHHHHhhccCC-----ccccccccccceEEEeccchhhhhh----------------hcccccc
Confidence            644322 1 11 112222236788877     6788888899999999877643211                3338889


Q ss_pred             EEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          263 VNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                      ++.++|.+.+        +.+.++.|..+
T Consensus       162 gtq~av~lEd--------~vil~dcd~~L  182 (615)
T KOG2247|consen  162 GTQIAVTLED--------YVILCDCDNTL  182 (615)
T ss_pred             eeEEEecccc--------eeeecCcHHHH
Confidence            9999999986        66666666543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.92  E-value=1.4  Score=41.75  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=27.5

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS   92 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~   92 (298)
                      |-......++|+|...++|.+.     ..|.|+++-...
T Consensus        33 G~~~~~~~~afD~~q~llai~t-----~tg~i~~yg~~~   66 (993)
T KOG1983|consen   33 GFPSTPSALAFDPTQGLLAIGT-----RTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCCcceeeccccceEEEEE-----ecccEEEecccc
Confidence            4445677899999999999995     489999998653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.80  E-value=0.76  Score=35.06  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-------cc-------cccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-------LQ-------SHSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      ..++.+|++-     +.+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+ +|....|
T Consensus        19 ~~~~~~Ll~i-----T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   19 ECNGSYLLAI-----TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             EeCCCEEEEE-----eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            3456677766     4599999999998765432       12       2456788888888887776655 5777888


Q ss_pred             Eecc
Q 037555          131 AIQR  134 (298)
Q Consensus       131 d~~~  134 (298)
                      +...
T Consensus        93 ~~~L   96 (219)
T PF07569_consen   93 SPDL   96 (219)
T ss_pred             cccc
Confidence            7664

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.71  E-value=3.3  Score=33.96  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=33.4

Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEEEeec
Q 037555          155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALSWVGL  208 (298)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~  208 (298)
                      .+.|+|.|+++.|++ ...|.|++++ ..+.....+..+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            478999999876664 5699999999 333321212122    234456899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.71  E-value=4.4  Score=35.34  Aligned_cols=133  Identities=13%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             eEEEEEEcCCceeeecccc--ccc----cEEEEEEc----CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           83 AEIWLWEVGSWKAMGRLQS--HSL----TVTQIRFS----HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~--~~~----~v~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      +.|.-+|..+++.+-.++.  |..    ......+.    -++.   .++.++.+|.+...|..+++       .+-...
T Consensus       256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~-------~~W~~~  328 (488)
T cd00216         256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK-------LISARP  328 (488)
T ss_pred             eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc-------EeeEeE
Confidence            4799999999988766542  210    00000111    1333   57788889999999988743       222111


Q ss_pred             ccCCceEEEEEccCCCEEEEe------------------eCCCeEEEEEccCCcceeeeeecCCCC------Cce--EEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATG------------------SRDKTVKIWAVENKSSVKQILALPPFN------SSV--TAL  203 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~~wd~~~~~~~~~~~~~~~~~------~~v--~~~  203 (298)
                      ..   ...+..+|  ..++.+                  ..+|.|.-.|+.+++.+-..... .+.      .+.  ..+
T Consensus       329 ~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~~~~  402 (488)
T cd00216         329 EV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWGGSL  402 (488)
T ss_pred             ee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccCcce
Confidence            10   01122333  223322                  24678888898888876533211 000      111  111


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      ..  .+     .+++.++.||.|+.+|..+++
T Consensus       403 ~~--~g-----~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         403 AT--AG-----NLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             Ee--cC-----CeEEEECCCCeEEEEECCCCc
Confidence            22  22     578888899999999999883

The alignment model contains an 8-bladed beta-propeller.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.69  E-value=0.44  Score=36.36  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=47.5

Q ss_pred             EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee-------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555          111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN  183 (298)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  183 (298)
                      +..+++++++.+.+|.+++||+...+...........+.       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            344788999999999999999987542211000001111       3456788888888887666655 57788888764


Q ss_pred             C
Q 037555          184 K  184 (298)
Q Consensus       184 ~  184 (298)
                      .
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.68  E-value=1.6  Score=30.11  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=70.4

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-ceeeeEEeeccCCceEEEEEcc-----CCCEEEEeeCCCeEEEEEcc
Q 037555          109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-DYQLIARQEAHKRIIWSCSWNP-----FGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~  182 (298)
                      -+|.....-|+.++.-|.|.|++......... ....+..+ .-...|++++-.+     ....|+.|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            45555556788888899999998765432111 02223333 2456677776544     2356777664 679999999


Q ss_pred             CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ....+.    .+..+..+.++.+-..+. ....++++|+ +..|.-||..
T Consensus        82 ~N~d~F----yke~~DGvn~i~~g~~~~-~~~~l~ivGG-ncsi~Gfd~~  125 (136)
T PF14781_consen   82 NNSDLF----YKEVPDGVNAIVIGKLGD-IPSPLVIVGG-NCSIQGFDYE  125 (136)
T ss_pred             cCchhh----hhhCccceeEEEEEecCC-CCCcEEEECc-eEEEEEeCCC
Confidence            877665    233557788888765442 1224555554 5666666654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.67  E-value=0.97  Score=33.06  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             CceEEEEEeeccccCC-ccEEEEeecCCcEEEEEeee
Q 037555          198 SSVTALSWVGLDRQKN-HGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~-~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ..+.+++|+|.|...+ +.+|++-+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4789999999886544 46788888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.65  E-value=1.6  Score=30.07  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             EEEccCCCEEEEeeCCCeEEEEEccCCcce-----eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          158 CSWNPFGHEFATGSRDKTVKIWAVENKSSV-----KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      -.|......|+.++.-|+|.|++.......     ..+..+. ....|++++-.+-.+......|+.|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            356656667888888899999987643211     1111222 456788887777543344478888875 568999998


Q ss_pred             ec
Q 037555          233 VN  234 (298)
Q Consensus       233 ~~  234 (298)
                      ..
T Consensus        82 ~N   83 (136)
T PF14781_consen   82 NN   83 (136)
T ss_pred             cC
Confidence            75

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.52  E-value=4.3  Score=34.63  Aligned_cols=30  Identities=13%  Similarity=0.269  Sum_probs=23.7

Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|.+++..+..     +.+++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r-----~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSR-----RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTT-----TEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCc-----CEEEEEeCCCcEEEEEEeC
Confidence            38888888776     7999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.30  E-value=2.7  Score=31.65  Aligned_cols=106  Identities=15%  Similarity=0.290  Sum_probs=66.2

Q ss_pred             CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---C---eEEEE---Ecc-CC-
Q 037555          116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---K---TVKIW---AVE-NK-  184 (298)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~w---d~~-~~-  184 (298)
                      ..|+.+...+.|.+|++....     .++...+..- +.|..+.++..|+++++-=.+   .   .+|+|   +.. .. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~-----~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE-----CPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC-----CceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence            344444667889999998432     4455555544 788999999999999987432   2   55664   222 10 


Q ss_pred             cce--------------------eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          185 SSV--------------------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       185 ~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ...                    ..+..++ ...++.+++.+|..     .-|+.|+ ++.+.+|.+...
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~t-----G~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVT-----GNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCC-----CCEEEEc-CCEEEEEEEEEE
Confidence            110                    1111222 34567888888876     4566665 467999988765

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.21  E-value=2.9  Score=31.95  Aligned_cols=93  Identities=11%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEE--cCCceee-----ecccc---ccc-cEEEEEEcCCCCEEEEEeCCCeE
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWE--VGSWKAM-----GRLQS---HSL-TVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~--~~~~~~~-----~~~~~---~~~-~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      -+.++|+.+.+.+...-    +.+-.|.-||  ..+|...     ..++.   ... .--.++...+|++.+++-..++|
T Consensus       160 sNgl~Wd~d~K~fY~iD----sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V  235 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYID----SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV  235 (310)
T ss_pred             CccccccccCcEEEEEc----cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence            34678887777666552    3467787777  5555322     11111   111 11234456688899999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      ...|..+       ++.+.+++-....|++++|--
T Consensus       236 ~~~dp~t-------GK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  236 QKVDPTT-------GKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEECCCC-------CcEEEEEEcCCCceEEEEecC
Confidence            9999988       677888887888999999974

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.09  E-value=4.5  Score=33.60  Aligned_cols=109  Identities=11%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             EEcCCceeeeccccccccEEE-----EEEcCCCCEEEE-EeCCCe--EEEEEeccCCCCccceeeeEEeeccC-CceEEE
Q 037555           88 WEVGSWKAMGRLQSHSLTVTQ-----IRFSHDDNLLLS-VSRDRQ--FSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSC  158 (298)
Q Consensus        88 w~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~  158 (298)
                      -|..+|..+..+.........     =+|.++|+.|+- +..||.  +.+.|+.+.        .+.++.... ......
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~--------~i~QLTdg~g~~~~g~   86 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG--------EITQLTDGPGDNTFGG   86 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---------EEEE---SS-B-TTT-
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC--------EEEECccCCCCCccce
Confidence            366777777666543333333     356678875554 444555  555555542        233343332 223346


Q ss_pred             EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .++|+++.++-......|+-.|+++.+... +..++  ...+-...|..
T Consensus        87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~~p--~~~~g~gt~v~  132 (386)
T PF14583_consen   87 FLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYEVP--DDWKGYGTWVA  132 (386)
T ss_dssp             EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE----TTEEEEEEEEE
T ss_pred             EEecCCCeEEEEECCCeEEEEECCcCcEEE-EEECC--cccccccceee
Confidence            677888887766666789999999876533 32332  34444456654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.95  E-value=3.9  Score=32.56  Aligned_cols=119  Identities=11%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe------CCCeEEEEEeccCCCCccceeeeEE-e-eccCC
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS------RDRQFSVFAIQRTGTGEIDYQLIAR-Q-EAHKR  153 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-~-~~~~~  153 (298)
                      -..|++||..+.+-...-.+-.+.|+++.|..+.+++++|.      ....+..||.....     +..... . ..-.+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-----w~~~~~~~s~~ipg   89 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-----WSSLGGGSSNSIPG   89 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-----eeecCCcccccCCC
Confidence            45699999887766555555678899999986666777664      35578888887632     222211 1 12346


Q ss_pred             ceEEEEEcc-CC-CEEEEee-C--CCeEEEEEccCCcceeeeee-cCCCCCceEEEEEeec
Q 037555          154 IIWSCSWNP-FG-HEFATGS-R--DKTVKIWAVENKSSVKQILA-LPPFNSSVTALSWVGL  208 (298)
Q Consensus       154 ~v~~~~~~~-~~-~~l~~~~-~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  208 (298)
                      +|..+.+.. +. +.++.|. .  +..|..||-.....+.   . .......|..+.+.|-
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~---~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG---SDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEecc---ccccCCCCEEEEEEEEec
Confidence            788887754 33 3444443 2  3347777655443332   2 2223567888877776

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.94  E-value=4.8  Score=33.58  Aligned_cols=100  Identities=7%  Similarity=0.049  Sum_probs=50.7

Q ss_pred             cEEEEEEcCCCCEEEEEe-----------CCC-eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC
Q 037555          105 TVTQIRFSHDDNLLLSVS-----------RDR-QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR  172 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (298)
                      ....++|.++|+++++-.           ..+ .|.+++-..... .  ......+...-.....+++.+++  |+++..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-K--YDKSNVFAEELSMVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-C--cceeEEeecCCCCccceeEecCC--EEEeCC
Confidence            456789999998777653           223 666665432211 1  11122222223345788898888  444444


Q ss_pred             CCeEEEEEccCC-----cceeeeeecCC----CCCceEEEEEeecc
Q 037555          173 DKTVKIWAVENK-----SSVKQILALPP----FNSSVTALSWVGLD  209 (298)
Q Consensus       173 dg~i~~wd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~  209 (298)
                      ....++.|....     +....+..+..    +......++|.|++
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG  135 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG  135 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence            443334454321     11111112322    12446789999987

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.82  E-value=5.5  Score=33.96  Aligned_cols=30  Identities=13%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..|..++..+..       +.|++...+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r-------~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSR-------RLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTT-------TEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCc-------CEEEEEeCCCcEEEEEEe
Confidence            349999999888       899999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=92.67  E-value=6.3  Score=34.27  Aligned_cols=145  Identities=11%  Similarity=0.017  Sum_probs=67.3

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC---eEEEEEeccCCCCccc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR---QFSVFAIQRTGTGEID  141 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~  141 (298)
                      ++.+.+.||.+   ....+..||..+++-  +..+.........+.  -+|++.+.|+.++   .+..||..+..     
T Consensus       318 ~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~-----  387 (480)
T PHA02790        318 NNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ-----  387 (480)
T ss_pred             CCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE-----
Confidence            56777777652   234678888765432  222221111111222  2677777777653   36677766532     


Q ss_pred             eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      +............. +++ .-++...+.|   |.+.+||.++.+-. .+..+...... .+++.. ++     .+.+.|+
T Consensus       388 W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~-~~~~m~~~r~~-~~~~v~-~~-----~IYviGG  454 (480)
T PHA02790        388 WQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWT-LIDDPIYPRDN-PELIIV-DN-----KLLLIGG  454 (480)
T ss_pred             EEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEe-EcCCCCCCccc-cEEEEE-CC-----EEEEECC
Confidence            33222221111111 222 2245555555   35778888765432 22222211111 223322 33     5667776


Q ss_pred             cC-----CcEEEEEeeec
Q 037555          222 ES-----GVIELWSISVN  234 (298)
Q Consensus       222 ~d-----g~i~vwd~~~~  234 (298)
                      .+     ..+..||..+.
T Consensus       455 ~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        455 FYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cCCCcccceEEEEECCCC
Confidence            43     34566666543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.58  E-value=0.013  Score=48.79  Aligned_cols=135  Identities=10%  Similarity=0.133  Sum_probs=90.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  135 (298)
                      .......|-+.+.-++.++.     +..+..||-. ++...... .+.....++|..++..+ +.+-..+.+.+||+.+.
T Consensus        35 v~pi~~~w~~e~~nlavaca-----~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACA-----NTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             cccceeeEecCCCceehhhh-----hhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence            33445667777766777754     6778888854 44333333 35566778888877644 45667889999999863


Q ss_pred             CCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          136 GTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ..        .++. +....-.-+.|++....++.+-..|.+.+++..+.+.+.   ..-.|...++++++.+.+
T Consensus       108 yt--------qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  108 YT--------QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             hH--------HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccc
Confidence            21        1111 111111226788888888999899999999988776554   332378889999999986

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=4.6  Score=34.77  Aligned_cols=84  Identities=13%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--ceeee--EEe---------eccCCceEEEEEccCC---CEE
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--DYQLI--ARQ---------EAHKRIIWSCSWNPFG---HEF  167 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~--~~~---------~~~~~~v~~~~~~~~~---~~l  167 (298)
                      -.|..+..++.|..++-++.+|.+.++=.+.-+....  +++..  ...         ....-.+..++|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            4577888899999999999999877664332211100  01111  100         0112246678899965   678


Q ss_pred             EEeeCCCeEEEEEccCCcce
Q 037555          168 ATGSRDKTVKIWAVENKSSV  187 (298)
Q Consensus       168 ~~~~~dg~i~~wd~~~~~~~  187 (298)
                      ..-+.|..||+||+.....+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            88889999999999875544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.75  E-value=8  Score=33.39  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEcc---------CCcceeeeeecC--------CCCCceEEEEEeeccccCCcc
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVE---------NKSSVKQILALP--------PFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~  215 (298)
                      -.|..+..++.|..++-.+.+|.+.++=.+         +++.....+++.        ...-.+..++|+|++...  .
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D--~  181 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD--P  181 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC--c
Confidence            346677788888888888888866554311         222211111111        011234566777765211  3


Q ss_pred             EEEEeecCCcEEEEEeee
Q 037555          216 FLAVGMESGVIELWSISV  233 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~  233 (298)
                      .|..-..|..|++||+..
T Consensus       182 hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eEEEEecCcEEEEEecCC
Confidence            555556677777777654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.46  E-value=2  Score=36.07  Aligned_cols=166  Identities=14%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--ecccccc----ccEE-EEEEcCCCCEEEEEeCC
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHS----LTVT-QIRFSHDDNLLLSVSRD  124 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~----~~v~-~~~~~~~~~~l~~~~~d  124 (298)
                      +..-...|..+-..|+|+.|..-.      ..++.++++.+....  +......    ..|+ .+..-..|.-+++++.|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~------g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRT------GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEec------CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            334445677888899999887763      357888887643221  1111111    1122 12222356678888889


Q ss_pred             CeEEEE-EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          125 RQFSVF-AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       125 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      |.|.-| |++......  ...++.++-...++..+.-....+-|++-+..|++.++.....+.+.    ++..-..+.-+
T Consensus       290 G~vsQWFdvr~~~~p~--l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL----~~~~~~~~~~~  363 (733)
T COG4590         290 GLVSQWFDVRRDGQPH--LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL----FERAYQAPQLV  363 (733)
T ss_pred             CceeeeeeeecCCCCc--ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee----hhhhhcCccee
Confidence            988876 555433211  23333333333444444333344567777888888887665544332    11222356678


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +++|.+     .++++- +.|.|+++.+++..
T Consensus       364 ~~Sp~~-----~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         364 AMSPNQ-----AYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             eeCccc-----chheee-cCCceEEEEecCCC
Confidence            999988     677664 45789999988764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.32  E-value=1.2  Score=23.32  Aligned_cols=32  Identities=6%  Similarity=0.133  Sum_probs=24.2

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS  101 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~  101 (298)
                      |+++.|.++..    .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEEC
Confidence            57777777753    478999999988887776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.09  E-value=8.1  Score=32.20  Aligned_cols=201  Identities=15%  Similarity=0.157  Sum_probs=101.6

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc----CCCCE--EEEEe-CC---CeEEEEEeccCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS----HDDNL--LLSVS-RD---RQFSVFAIQRTG  136 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~~~~  136 (298)
                      ...+++...     .++-+.+||++ |+.++.+..  +.+..+..-    -.|+.  |++++ .+   ..|++|.+....
T Consensus        67 ~kSlIigTd-----K~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   67 AKSLIIGTD-----KKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GG-EEEEEE-----TTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             ccceEEEEe-----CCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            344666663     36779999997 666666542  223333221    13432  34443 32   479999887422


Q ss_pred             CCccceeeeE----EeeccCCceEEEEEc--c-CCC-EEEEeeCCCeEEEEEccC---Ccc-eeeeeecCCCCCceEEEE
Q 037555          137 TGEIDYQLIA----RQEAHKRIIWSCSWN--P-FGH-EFATGSRDKTVKIWAVEN---KSS-VKQILALPPFNSSVTALS  204 (298)
Q Consensus       137 ~~~~~~~~~~----~~~~~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~~wd~~~---~~~-~~~~~~~~~~~~~v~~~~  204 (298)
                      . .  ...+.    .+......++.+|+-  + ++. +.++...+|.+..|-+..   +.. ...++.+. ..+.+..+.
T Consensus       139 g-~--L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCV  214 (381)
T PF02333_consen  139 G-E--LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCV  214 (381)
T ss_dssp             T-E--EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred             C-c--ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEE
Confidence            1 0  11110    011122346777764  3 343 556677889998888753   211 12233443 345778888


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      .....     ..|..+-++.-|.-|+.+.......        ..+.... -......|-.|+.-....   ..+.+|+|
T Consensus       215 VDDe~-----g~LYvgEE~~GIW~y~Aep~~~~~~--------~~v~~~~-g~~l~aDvEGlaly~~~~---g~gYLivS  277 (381)
T PF02333_consen  215 VDDET-----GRLYVGEEDVGIWRYDAEPEGGNDR--------TLVASAD-GDGLVADVEGLALYYGSD---GKGYLIVS  277 (381)
T ss_dssp             EETTT-----TEEEEEETTTEEEEEESSCCC-S----------EEEEEBS-SSSB-S-EEEEEEEE-CC---C-EEEEEE
T ss_pred             Eeccc-----CCEEEecCccEEEEEecCCCCCCcc--------eeeeccc-ccccccCccceEEEecCC---CCeEEEEE
Confidence            87776     6899998887666666553211110        2222211 122456777888765320   12255666


Q ss_pred             eeCCCcEEEeEe
Q 037555          285 CGADNTVRVFQV  296 (298)
Q Consensus       285 ~~~d~~i~iw~~  296 (298)
                      .-.+++..+|+-
T Consensus       278 sQG~~sf~Vy~r  289 (381)
T PF02333_consen  278 SQGDNSFAVYDR  289 (381)
T ss_dssp             EGGGTEEEEEES
T ss_pred             cCCCCeEEEEec
Confidence            667788888874

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.94  E-value=3.6  Score=36.41  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=43.8

Q ss_pred             CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-------------------EeeccCCceEEEEEcc----CCCEEEE
Q 037555          113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-------------------RQEAHKRIIWSCSWNP----FGHEFAT  169 (298)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~----~~~~l~~  169 (298)
                      ++...++.+..||.+...................                   ........+..++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888888999998888765210000000000                   0001123455566665    6789999


Q ss_pred             eeCCCeEEEEEccCCcceee
Q 037555          170 GSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       170 ~~~dg~i~~wd~~~~~~~~~  189 (298)
                      .+.|+++|+||+.++.++..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEE
Confidence            99999999999999988553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.42  E-value=7.7  Score=30.85  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=93.7

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      .+-+..+.++.+  +...+     ..+.-++|.|+.+....   ..+. -.+-..++..  .|++..++..|.-+.+.|+
T Consensus        86 ~~l~~Dv~vse~--yvyva-----d~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdv  155 (370)
T COG5276          86 RDLFADVRVSEE--YVYVA-----DWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             hhhhheeEeccc--EEEEE-----cCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence            345566677644  44444     33566999998765432   2222 2233444444  6888888887767778999


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      ..++..    .+..........-..++.+  |++-+.+..|+-+.+.|+........+.... ....+.++..+++.   
T Consensus       156 sdpssP----~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr---  225 (370)
T COG5276         156 SDPSSP----QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNR---  225 (370)
T ss_pred             CCCCCc----eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCe---
Confidence            876542    2233333334444566665  7888888889999999998876655333332 23367788777764   


Q ss_pred             CccEEEEeecCCcEEEEEeeec
Q 037555          213 NHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                        -+++.. ..| +.+-|....
T Consensus       226 --~y~vvy-~eg-vlivd~s~~  243 (370)
T COG5276         226 --AYLVVY-DEG-VLIVDVSGP  243 (370)
T ss_pred             --eEEEEc-ccc-eEEEecCCC
Confidence              344433 233 555565544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.33  E-value=1.5  Score=22.60  Aligned_cols=26  Identities=15%  Similarity=0.080  Sum_probs=18.7

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEec
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~   76 (298)
                      .+......-....|+|||+.|+-++.
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEEec
Confidence            34445667789999999999988875

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.89  E-value=5.2  Score=31.06  Aligned_cols=121  Identities=12%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeee---ccccccccEEEEEEcCCCCEEEEEeCCCe-EEEEEecc
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMG---RLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-FSVFAIQR  134 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~  134 (298)
                      .+-++|++|.+|+...  ....+++++...    .....   .+. ....=-...--|||+.|+.|+.... ..+|....
T Consensus        73 ~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~  149 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG  149 (243)
T ss_pred             CCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence            4668999999997632  245688888644    11111   111 1222223445569999998887643 33443322


Q ss_pred             CCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee
Q 037555          135 TGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      ..........+....  ....---.+...|+|+.|+.+..+.  .+||..+.+.+.
T Consensus       150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            111110011111110  0111223466789999999888654  566888776655

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.68  E-value=17  Score=33.73  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec----cCCcccceEEEEEeecCCC
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD----PFACHVAAVNRMAWKTHEK  273 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~  273 (298)
                      ..|.++.....+     .+++....||+|.++|..+.+..............+..+.    .+. .-.++..++|||.+ 
T Consensus       260 ~~V~si~~~~~~-----~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~-  332 (753)
T PF11635_consen  260 KRVVSITSPELD-----IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTM-  332 (753)
T ss_pred             CeEEEEEecccC-----cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccc-cCCCCceEEECccc-
Confidence            446666666665     6889999999999999987654433200000111111111    011 12256679999999 


Q ss_pred             CCCCcceEEEeeeCCCcEE
Q 037555          274 PKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d~~i~  292 (298)
                            ..++.-..+|.+.
T Consensus       333 ------c~~v~~~~~~~~~  345 (753)
T PF11635_consen  333 ------CSLVQIDEDGKTK  345 (753)
T ss_pred             ------ceEEEEecCCCce
Confidence                  7888888888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.10  E-value=24  Score=33.42  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=83.4

Q ss_pred             ceEEEEEcCCCC--EEEeEeccCC------CCceEEEEEEcC-Cceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           58 ELFSLCCDHQGK--LVASSCKAQS------TAAAEIWLWEVG-SWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        58 ~v~~~~~s~~~~--~l~~~~~~~~------~~d~~i~vw~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      .|.++.|+....  ++++++....      -.+|.++.|++- .++.+.-+.  .-.+.|  .+..|-..++++ +....
T Consensus       879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~La-gvG~~  955 (1205)
T KOG1898|consen  879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLA-GVGRF  955 (1205)
T ss_pred             heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEE-ecccE
Confidence            466666654322  4444433111      124557777653 333222221  123334  445665554443 44578


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~  205 (298)
                      +++||+...+.     .....++.....|..+.+.  +.++++|...-.+.++..+... .+..+ .-...+..|+++.+
T Consensus       956 l~~YdlG~K~l-----LRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~f-adD~~pR~Vt~~~~ 1027 (1205)
T KOG1898|consen  956 LRLYDLGKKKL-----LRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVF-ADDPVPRHVTALEL 1027 (1205)
T ss_pred             EEEeeCChHHH-----HhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEE-eCCCccceeeEEEE
Confidence            99999976321     1111222234567777665  6678888765556655444322 22222 22234556777777


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeee
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      -..+      .++.+..-|.+.+..+..
T Consensus      1028 lD~~------tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1028 LDYD------TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             ecCC------ceeeccccCcEEEEECCC
Confidence            6654      688887778887776653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.05  E-value=16  Score=31.39  Aligned_cols=61  Identities=13%  Similarity=0.058  Sum_probs=40.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccc-----cccccEEEEEEcCCC
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQ-----SHSLTVTQIRFSHDD  115 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~  115 (298)
                      ..+...-.....|+|.|+|++|++--     ..|.|++++..++..  +..+.     ........|+++|+-
T Consensus        23 ~~va~GL~~Pw~maflPDG~llVtER-----~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        23 KVLLSGLNKPWALLWGPDNQLWVTER-----ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEEECCCCCceEEEEcCCCeEEEEEe-----cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34444456788999999998888762     258999998654432  21111     135678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.70  E-value=16  Score=30.91  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEE-EEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWL-WEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~v-w~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ...+..++++.+++.+.      .|.+.. ||-  +..  ...-......+..+.+.+++.+++++ ..|.+.. ....+
T Consensus       241 f~~v~~~~dG~~~~vg~------~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSS------RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEEC------CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC
Confidence            44556678888888873      344433 433  221  11112234568899999998877665 4566543 22222


Q ss_pred             CCCccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          136 GTGEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ....  .........  ....+..+.|.+++..+++ +..|.+... ...++...............+.+.|.+.+    
T Consensus       311 ~~~~--~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~----  382 (398)
T PLN00033        311 LTEE--DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDK----  382 (398)
T ss_pred             Cccc--ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCC----
Confidence            1100  001111111  2235888999877765555 556766554 34444433211112334567889987765    


Q ss_pred             ccEEEEeecCCcEEEE
Q 037555          214 HGFLAVGMESGVIELW  229 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vw  229 (298)
                       ..+++ +.+|.|.-|
T Consensus       383 -~g~~~-G~~G~il~~  396 (398)
T PLN00033        383 -KGFVL-GNDGVLLRY  396 (398)
T ss_pred             -ceEEE-eCCcEEEEe
Confidence             34444 467776544

>PLN02153 epithiospecifier protein

Probab=87.69  E-value=14  Score=30.37  Aligned_cols=28  Identities=7%  Similarity=0.104  Sum_probs=17.0

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCce
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWK   94 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~   94 (298)
                      ++++++.|+.+....-..+.+||+.+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            4667777765322222468889987654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.49  E-value=17  Score=30.90  Aligned_cols=162  Identities=10%  Similarity=0.086  Sum_probs=83.1

Q ss_pred             EEEEcCCCCEEEeEeccCCCC------ceEEEEEEcCCceee--eccccccc--cEEEEEEcCCCCEEEEEeCC----Ce
Q 037555           61 SLCCDHQGKLVASSCKAQSTA------AAEIWLWEVGSWKAM--GRLQSHSL--TVTQIRFSHDDNLLLSVSRD----RQ  126 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~------d~~i~vw~~~~~~~~--~~~~~~~~--~v~~~~~~~~~~~l~~~~~d----g~  126 (298)
                      .+.|.++++.|+....+....      ...|+.|.+.+....  ..+.....  ....+..++|+++++.....    ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            389999999887776644333      667999998766432  33443222  25688899999987654332    34


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCce-EEEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCC--ce
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRII-WSCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNS--SV  200 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~--~v  200 (298)
                      +.+.++......   ......+......+ ..+... .+.+++...   ..+.|...++...........+..+..  .+
T Consensus       254 v~~~d~~~~~~~---~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l  329 (414)
T PF02897_consen  254 VYLLDLDDGGSP---DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL  329 (414)
T ss_dssp             EEEEECCCTTTS---S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred             EEEEeccccCCC---cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence            666676653100   11122222233333 334333 333333332   246777778877653111112222333  45


Q ss_pred             EEEEEeeccccCCccEEEEeecCC--cEEEEEee
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESG--VIELWSIS  232 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~  232 (298)
                      ..+....+      .+++....++  .|+++++.
T Consensus       330 ~~~~~~~~------~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  330 EDVSLFKD------YLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEETT------EEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEECC------EEEEEEEECCccEEEEEECC
Confidence            55554432      3555555555  57777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.79  E-value=19  Score=30.95  Aligned_cols=60  Identities=8%  Similarity=0.030  Sum_probs=36.3

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCC
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFG  164 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  164 (298)
                      .....++|.||+++|++--..|.|++++......... ........ ........|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~-~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV-FTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee-ecCCceeccCCCCceeeEEECCCc
Confidence            3467899999998777665579999987543221100 00001111 125678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.76  E-value=12  Score=28.37  Aligned_cols=140  Identities=9%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             ceEEEEEEcC--CceeeeccccccccEEEEEEcCCCCEEEEEeCC---C---eEEEE-EeccC--CCCcc----------
Q 037555           82 AAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---R---QFSVF-AIQRT--GTGEI----------  140 (298)
Q Consensus        82 d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~--~~~~~----------  140 (298)
                      ...|.+|++.  ..+....|.. -+.|..+.++..|+++++--.+   .   .+|+| +.+..  .....          
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~  115 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVT  115 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccc
Confidence            5789999987  3344555653 4789999999999999996432   2   55655 22221  10000          


Q ss_pred             ------cee-eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-ee--eeeecC------CCCCceEEEE
Q 037555          141 ------DYQ-LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VK--QILALP------PFNSSVTALS  204 (298)
Q Consensus       141 ------~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~--~~~~~~------~~~~~v~~~~  204 (298)
                            ... ......+-..++.+++..|....|++|+ ++++.+|.+..... ..  .+..+.      ...-.+..++
T Consensus       116 ~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~  194 (215)
T PF14761_consen  116 PSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVA  194 (215)
T ss_pred             cCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEE
Confidence                  000 0011112345677888888554555555 46788888765433 11  111221      0112245566


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +..       .++|..+ +-.+++..+
T Consensus       195 ic~-------~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  195 ICE-------GYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEe-------eEEEEec-CCEEEEEEE
Confidence            655       4666655 455666655

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.74  E-value=24  Score=32.03  Aligned_cols=153  Identities=18%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--c--ccccccEEEEEEcCCCCEEEEEeCCCeEE-EEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--L--QSHSLTVTQIRFSHDDNLLLSVSRDRQFS-VFA  131 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~-iwd  131 (298)
                      .++-.+.|+.+..+|+..      .+|+++||++. |+.+..  +  ......|..+.+..+|-.+.+  .+|.+. +-+
T Consensus        84 ~~lI~mgWs~~eeLI~v~------k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~  154 (829)
T KOG2280|consen   84 GELIGMGWSDDEELICVQ------KDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILING  154 (829)
T ss_pred             CCeeeecccCCceEEEEe------ccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcC
Confidence            378899999887777765      58999999986 443333  1  223344666666656643333  334443 333


Q ss_pred             eccCCCCccceeeeEEeec---cCCceEEEEEccCC---CEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          132 IQRTGTGEIDYQLIARQEA---HKRIIWSCSWNPFG---HEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~---~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .....        ......   ...+-.+-...+++   ..++-.. ..+ ..++-........  ..+....+.+..+.
T Consensus       155 ~~~~~--------~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~--~~~~~~~~~~~ki~  223 (829)
T KOG2280|consen  155 VEEPK--------LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL--HALSWPNSSVVKIS  223 (829)
T ss_pred             CCcch--------hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc--cccCCCCceEEEEE
Confidence            33211        111111   11111222222221   1111111 111 1122222211111  12222235677889


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+|+.     .+|+--..+|.|.+-+....
T Consensus       224 VS~n~-----~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  224 VSPNR-----RFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             EcCCc-----ceEEEEecCCcEEEEecchh
Confidence            99888     78999899999998887654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.40  E-value=28  Score=32.45  Aligned_cols=167  Identities=10%  Similarity=0.109  Sum_probs=96.5

Q ss_pred             cCCCceEEEEEc---C----CCCEEEeEeccCCCCceEEEEEEcCCc---------------eeeeccc---cccccEEE
Q 037555           54 GHGNELFSLCCD---H----QGKLVASSCKAQSTAAAEIWLWEVGSW---------------KAMGRLQ---SHSLTVTQ  108 (298)
Q Consensus        54 ~h~~~v~~~~~s---~----~~~~l~~~~~~~~~~d~~i~vw~~~~~---------------~~~~~~~---~~~~~v~~  108 (298)
                      .-..+|..|+|.   .    ..+.|++=.      ...+.|+...-.               .++..+.   ....+..+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt------~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD  150 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT------ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD  150 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc------CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence            456789999998   2    123555441      456777772111               1222222   12346778


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEEeccCCCCc-cceeeeEEeec-------cCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555          109 IRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGE-IDYQLIARQEA-------HKRIIWSCSWNPFGHEFATGSRDKTVKIW  179 (298)
Q Consensus       109 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  179 (298)
                      ++|+| +...||.....|...||++....... ..........+       ....-..+.|.++.+.|++++. ..+.++
T Consensus       151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~  229 (765)
T PF10214_consen  151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLI  229 (765)
T ss_pred             EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEE
Confidence            99999 55689999999999999992211110 00111100001       0122347889888888888875 568999


Q ss_pred             EccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          180 AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       180 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      |+++......+ ........|..+.-+|...  +.-+++|.   ..|...++..
T Consensus       230 d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~--~~~FiLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  230 DFESNWQTEYL-VTAKTWSWILDVKRSPDNP--SHVFILTS---KEIIWLDVKS  277 (765)
T ss_pred             ECCCCCccchh-ccCCChhheeeEEecCCcc--ceEEEEec---CeEEEEEccC
Confidence            99877653312 2223456788888888742  11233332   5677777766

These proteins are found in fungi.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.26  E-value=23  Score=31.31  Aligned_cols=53  Identities=17%  Similarity=0.141  Sum_probs=36.0

Q ss_pred             EEEEEEcCCceeeecccccccc---------EEEEEEcCCCC---EEEEEeCCCeEEEEEeccCC
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLT---------VTQIRFSHDDN---LLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~  136 (298)
                      .|.-.|+++|+..-.++.....         ..-+.+..+|+   .++.+.++|.+.+.|..+++
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence            6777899999887666532211         12222334665   77889999999999988754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.25  E-value=17  Score=29.78  Aligned_cols=114  Identities=14%  Similarity=0.110  Sum_probs=64.5

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCe------EEEEEeccCCCCcccee--eeEEeeccCC--------ceEEEEEccCCCE
Q 037555          103 SLTVTQIRFSHDDNLLLSVSRDRQ------FSVFAIQRTGTGEIDYQ--LIARQEAHKR--------IIWSCSWNPFGHE  166 (298)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~--~~~~~~~~~~--------~v~~~~~~~~~~~  166 (298)
                      -+.++.+.+.+++..+++.+.+|.      +..+++...........  ....+....+        -.-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999876667777787777      66666554111100011  1111111111        2346778667777


Q ss_pred             EEEeeCC------CeEEEEEccCCcceeeee---ec---------CCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          167 FATGSRD------KTVKIWAVENKSSVKQIL---AL---------PPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       167 l~~~~~d------g~i~~wd~~~~~~~~~~~---~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      +++--.+      ..|+.++.. ++....+.   .+         ...+....+|+++|++     ..|+++.+
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-----~~l~~~~E  166 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-----RTLFAAME  166 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-----CEEEEEEC
Confidence            7766666      778888866 44433221   01         1134568899999998     55666544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.10  E-value=4.9  Score=35.61  Aligned_cols=74  Identities=12%  Similarity=0.109  Sum_probs=39.9

Q ss_pred             cCCCEEEEeeCCCeEEEEEccC----Ccceeee-----------eecC--------CCCCceEEEEEeeccccCCccEEE
Q 037555          162 PFGHEFATGSRDKTVKIWAVEN----KSSVKQI-----------LALP--------PFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~-----------~~~~--------~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                      ++...++.+..||.+.......    +......           ..+-        ........++++.... .+..+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI-NDDTFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE------ETTTEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee-CCCCEEE
Confidence            3667788888899888777654    1111100           0000        0123345566665111 0117999


Q ss_pred             EeecCCcEEEEEeeeccc
Q 037555          219 VGMESGVIELWSISVNRT  236 (298)
Q Consensus       219 ~g~~dg~i~vwd~~~~~~  236 (298)
                      +-+.|+.+|+||+.++..
T Consensus       235 tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEETTSEEEEEETTTTCE
T ss_pred             EEeCCCeEEEEECCCCeE
Confidence            999999999999998754

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.24  E-value=19  Score=29.38  Aligned_cols=112  Identities=6%  Similarity=0.076  Sum_probs=53.3

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCcee---eeccccccccE--EEEEEcCCCCEEEEEeC-----CCeEEEEEeccCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA---MGRLQSHSLTV--TQIRFSHDDNLLLSVSR-----DRQFSVFAIQRTG  136 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~  136 (298)
                      ++.+++.|+.+....-..+..+|+.+.+.   ...+..-..+.  .+++. -++++.+.|+.     ...+..||+.+..
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            56677777653222234677777765542   11111111111  12222 25666666664     2357777876533


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCc
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKS  185 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~  185 (298)
                           +..+..+.... .....+...++.+++.|+.++    .+.+||.++.+
T Consensus       151 -----W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 -----WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             -----eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence                 33332221111 111222233566777777653    25678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=84.86  E-value=35  Score=32.16  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=68.4

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC------CEEEEeeCCCeEE
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG------HEFATGSRDKTVK  177 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~  177 (298)
                      ..++....+.+...++.++.++.+...++....      -...........|.|+.++|-+      +.+++|..+..+.
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~------l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~  561 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG------LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM  561 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccc------eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence            344444555556677777777777777776532      0111122345789999999842      3788888877655


Q ss_pred             EEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          178 IWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       178 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +.-............+. ...-.+++-+...+  .+..+|+++..||.+..|.+...
T Consensus       562 ~l~~~pd~~~~~~~~l~-~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  562 ILTFLPDLILITHEQLS-GEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDIN  615 (1096)
T ss_pred             EEEECCCcceeeeeccC-CCccchheeeEEee--ccceEEEEEcCCceEEEEEEEcc
Confidence            54333222222111111 22223344333322  11279999999999988877654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=84.80  E-value=19  Score=28.98  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC------Ccee-eecccc-----ccccEEEEEEcCCCC----------
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG------SWKA-MGRLQS-----HSLTVTQIRFSHDDN----------  116 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~~----------  116 (298)
                      -..|+++|.+.+-++.     ..-+...+||..      ..+. +-++..     .....+.+.|+....          
T Consensus        25 ~WGia~~p~~~~WVad-----ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~   99 (336)
T TIGR03118        25 AWGLSYRPGGPFWVAN-----TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG   99 (336)
T ss_pred             cceeEecCCCCEEEec-----CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence            5689999988766666     347889999986      1211 222221     224567777764322          


Q ss_pred             --EEEEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCce-EEEEEcc--CCCEEEEe-eCCCeEEEEEcc
Q 037555          117 --LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRII-WSCSWNP--FGHEFATG-SRDKTVKIWAVE  182 (298)
Q Consensus       117 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~~wd~~  182 (298)
                        .++.+++||+|.-|..........  .....+. .....| ..+++..  .+.+|+.+ ...++|.++|-.
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~--~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMT--RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCccccc--ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence              367889999999998643221000  0011111 111222 3444443  24455444 356777777654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.47  E-value=9.5  Score=32.35  Aligned_cols=163  Identities=14%  Similarity=0.119  Sum_probs=85.9

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC----ceE-EEEEccCCCEEEEeeCC
Q 037555           99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR----IIW-SCSWNPFGHEFATGSRD  173 (298)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d  173 (298)
                      +..-...|..+-..|||+.+..-+. ..+.++++.+..-..     .+......+    .|+ .+..-..+..+++++.|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-----rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-----RKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-----hhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            3444567788889999998877665 688889887643211     111111111    122 11112245678888899


Q ss_pred             CeEEEE-EccCCcce--eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555          174 KTVKIW-AVENKSSV--KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII  250 (298)
Q Consensus       174 g~i~~w-d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  250 (298)
                      |.|.-| |.+.....  ..++.++-...++.-+.  |+.   +.+-+++-+..|.+.++.....+             .+
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~---~rkgF~~l~~~G~L~~f~st~~~-------------~l  351 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PET---NRKGFYSLYRNGTLQSFYSTSEK-------------LL  351 (733)
T ss_pred             CceeeeeeeecCCCCcceeeeccccCcccceeec--ccc---ccceEEEEcCCCceeeeecccCc-------------ce
Confidence            998776 55543321  11112221122222221  221   11456666677777777554331             11


Q ss_pred             eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       .+.   .--..+.-+++||++       .+|++-. .|.++++.++
T Consensus       352 -L~~---~~~~~~~~~~~Sp~~-------~~Ll~e~-~gki~~~~l~  386 (733)
T COG4590         352 -LFE---RAYQAPQLVAMSPNQ-------AYLLSED-QGKIRLAQLE  386 (733)
T ss_pred             -ehh---hhhcCcceeeeCccc-------chheeec-CCceEEEEec
Confidence             111   122355668899988       6766654 4667777653

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.44  E-value=8.3  Score=24.59  Aligned_cols=60  Identities=12%  Similarity=0.216  Sum_probs=34.5

Q ss_pred             EEEEcCC-CCEEEeEeccC------------CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555           61 SLCCDHQ-GKLVASSCKAQ------------STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        61 ~~~~s~~-~~~l~~~~~~~------------~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      .+++.++ |....+-+...            ...+|.+..||..+++....+.+ -...+.+++++|+..++.+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            4566666 55555443211            24579999999998775444443 3356889999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.80  E-value=29  Score=30.29  Aligned_cols=79  Identities=13%  Similarity=0.039  Sum_probs=36.7

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc---eEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI---IWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---v~~~  158 (298)
                      .....++|.. |.....+.........+...++|.+++...  ..+..+|+.        ++.+.........   =..+
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--------G~v~~~~~l~~~~~~~HHD~  195 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--------GKVIWEYDLPGGYYDFHHDI  195 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----------EEEEEE--TTEE-B-S-E
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--------CCEEEeeecCCccccccccc
Confidence            5667777765 544433322111111166678888777655  777777775        3333333322211   2456


Q ss_pred             EEccCCCEEEEee
Q 037555          159 SWNPFGHEFATGS  171 (298)
Q Consensus       159 ~~~~~~~~l~~~~  171 (298)
                      ...|+|++|+.+.
T Consensus       196 ~~l~nGn~L~l~~  208 (477)
T PF05935_consen  196 DELPNGNLLILAS  208 (477)
T ss_dssp             EE-TTS-EEEEEE
T ss_pred             EECCCCCEEEEEe
Confidence            6778888877766

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.73  E-value=4.2  Score=20.86  Aligned_cols=30  Identities=10%  Similarity=0.244  Sum_probs=18.9

Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCC--CcEEEe
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGAD--NTVRVF  294 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d--~~i~iw  294 (298)
                      ....-....|+||++      .++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk------~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGK------YIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSS------EEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCC------EEEEEecCCCCCCcCEE
Confidence            344567788999994      444555566  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.53  E-value=21  Score=28.53  Aligned_cols=93  Identities=13%  Similarity=0.262  Sum_probs=54.3

Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee------CCCeEEEEEccCCcceeeeeecCC---
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS------RDKTVKIWAVENKSSVKQILALPP---  195 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~---  195 (298)
                      ..|++||....+     +...  -..-.+.|+.+.|..+.+.++.|.      ....+..||..+..-.    .+..   
T Consensus        16 ~~lC~yd~~~~q-----W~~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~----~~~~~~s   84 (281)
T PF12768_consen   16 PGLCLYDTDNSQ-----WSSP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS----SLGGGSS   84 (281)
T ss_pred             CEEEEEECCCCE-----eecC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee----ecCCccc
Confidence            458999987633     2211  123457899999986666666664      3456888998875432    2222   


Q ss_pred             --CCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEe
Q 037555          196 --FNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSI  231 (298)
Q Consensus       196 --~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~  231 (298)
                        .++++..+.+.....   .++.+.|. .++.  |..||-
T Consensus        85 ~~ipgpv~a~~~~~~d~---~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   85 NSIPGPVTALTFISNDG---SNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             ccCCCcEEEEEeeccCC---ceEEEeceecCCCceEEEEcC
Confidence              347788887754331   13555544 3444  445543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.02  E-value=20  Score=27.91  Aligned_cols=142  Identities=11%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-C--CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-D--RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      -.+||+.+++....-......+.+-.+.+||+++.+|+. +  ..+++++...... ...+............--....-
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~-~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG-TCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC-CCCceECcccccCCCccccceEC
Confidence            347888876543221223334455567889999999875 2  3577887654111 00011111111122333445556


Q ss_pred             cCCCEEEEeeCCC-eEEEEEccCC-cceeeeeecCC-----CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          162 PFGHEFATGSRDK-TVKIWAVENK-SSVKQILALPP-----FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       162 ~~~~~l~~~~~dg-~i~~wd~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |||+.|+.|+... +..+|.-+.. .....+..+..     ...----+...|++     ++++.+..+.  .|||..+.
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-----~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-----NLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-----CEEEEEcCCc--EEEeCCCC
Confidence            7899998888764 3444443221 11111101110     01112245667777     7777777654  45677665

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.26  E-value=35  Score=30.21  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=23.0

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      .+..++.++.+|.++.+|.++++.+...
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence            3456777888999999999999988744

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.39  E-value=6.8  Score=35.62  Aligned_cols=96  Identities=14%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555          106 VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA  180 (298)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  180 (298)
                      -..+.|-|+|..+++-+.||     .|.++..+.-..+.    .-.. .+....+..++|+-....++. ...+.|++|-
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGe----f~lr-~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwt  322 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGE----FDLR-VGCDEKAFLENWNLLSTVLAV-AEGNLLKLWT  322 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCC----cccc-CCchhhhhhhhhhHHHHHHHH-hhcceEEEEE
Confidence            34589999999999977554     35555543222111    1111 122344566777755444443 3456799998


Q ss_pred             ccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          181 VENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ..+-.-..   .....-..+.-+.|+|...
T Consensus       323 tkNyhWYL---K~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         323 TKNYHWYL---KVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             ccceEEEE---EEeecCCCcceeeeccccC
Confidence            76643322   1111223466788998763

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=80.73  E-value=26  Score=27.75  Aligned_cols=104  Identities=7%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC
Q 037555          105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK  184 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  184 (298)
                      .-..++-.|||..-+++...+.|--.|..++       +....-.+....-..+...|++...++-+.. -|.-.|-++.
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tG-------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~  134 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATG-------EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL  134 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCC-------ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence            3456777888888888887787877777763       2233223333445667788888776664433 4555565554


Q ss_pred             cceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          185 SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      +....-...+..........|.+.+     .+-+++.
T Consensus       135 evt~f~lp~~~a~~nlet~vfD~~G-----~lWFt~q  166 (353)
T COG4257         135 EVTRFPLPLEHADANLETAVFDPWG-----NLWFTGQ  166 (353)
T ss_pred             ceEEeecccccCCCcccceeeCCCc-----cEEEeec
Confidence            4322111222334557788888888     5666664

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=80.33  E-value=60  Score=31.57  Aligned_cols=185  Identities=12%  Similarity=0.175  Sum_probs=95.9

Q ss_pred             eEEEEEEcCCceeeecccc-ccccEEEEEE---cC----C--CCEEEEEeC---------CCeEEEEEecc----CCCCc
Q 037555           83 AEIWLWEVGSWKAMGRLQS-HSLTVTQIRF---SH----D--DNLLLSVSR---------DRQFSVFAIQR----TGTGE  139 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~---~~----~--~~~l~~~~~---------dg~i~iwd~~~----~~~~~  139 (298)
                      ..|.+.+..+++.+-.+.- ...-|.+++.   ..    .  ..+|++|..         -|.+.++|+-.    ++...
T Consensus      1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred             ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence            4566666666655433221 1222333333   21    1  236777642         48899999854    11111


Q ss_pred             cceeeeE-EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          140 IDYQLIA-RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       140 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                      ...+... ..+...++|..++=- +| +|+++. ..+|.+|+++....+..+ .+-..+-.+.++..-.       ++|+
T Consensus      1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vk-------nlIl 1152 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVK-------NLIL 1152 (1366)
T ss_pred             ccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEeccCCcceee-EEeccceeEEehhhhh-------hhee
Confidence            1011111 112345666655422 34 455544 367999999544433333 2222333344433332       6788


Q ss_pred             EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .|.--..|.+.......            ..+..+. -....-.+.++.|--+|     ..-.++.+..|+.|+++-.
T Consensus      1153 ~gDV~ksisfl~fqeep------------~rlsL~s-rd~~~l~v~s~EFLVdg-----~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEEP------------YRLSLLS-RDFEPLNVYSTEFLVDG-----SNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             hhhhhhceEEEEEccCc------------eEEEEee-cCCchhhceeeeeEEcC-----CeeEEEEEcCCCcEEEEEe
Confidence            88777777777665431            2222222 11233467788888777     2357888889999988754

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=80.12  E-value=26  Score=27.51  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             CCCceEEEEEeeccccC--CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce-EEEEEee-cC
Q 037555          196 FNSSVTALSWVGLDRQK--NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA-VNRMAWK-TH  271 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~  271 (298)
                      ....|+||+--......  .-..|+.|+++|.|+|.|....             ..+..+. +..-... ...-.|. -|
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af-------------~il~~~~-lpsvPv~i~~~G~~devd  240 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF-------------TILKQVQ-LPSVPVFISVSGQYDEVD  240 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh-------------eeEEEEe-cCCCceEEEEEeeeeccc
Confidence            45567888765543221  3368999999999999998765             3333332 1111111 1122232 23


Q ss_pred             CCCCCCcceEEEeeeCCCcEEEe
Q 037555          272 EKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                              ..|+.++.||.|++-
T Consensus       241 --------yRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  241 --------YRIVVACRDGKIYTI  255 (257)
T ss_pred             --------eEEEEEeCCCEEEEE
Confidence                    578888889988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-04

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 44/260 (16%)
Query: 52  LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQSHSLTVTQ 108
           L GH NE+ S+     G L+A+  + +S     +W+WEV     ++ +  L SH+  V  
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKS-----VWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA 168
           + +     LL S S D    ++  +     E D+   A  E H+  +WS +++P G   A
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREE-----EDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 169 TGSRDKTVKIW------------AVENKSSVKQILALPPFNS-SVTALSWVGLDRQKNHG 215
           + S D+TV+IW               +  S K I  L  F+S ++  ++W  L      G
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-----G 265
Query: 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275
            LA       I ++    N     S P   T ++         H   VN +AW   E   
Sbjct: 266 ALATACGDDAIRVFQEDPN-----SDPQQPTFSLTAHL--HQAHSQDVNCVAWNPKEP-- 316
Query: 276 NSRTMQLASCGADNTVRVFQ 295
                 LASC  D  V  ++
Sbjct: 317 ----GLLASCSDDGEVAFWK 332

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 52  LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
           L GH   + S+     G+ +ASS     +A   I +W     K    +  H L ++ + +
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASS-----SADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
           S D NLL+S S D+   ++ +          + +   + H   ++ C++NP  +   +GS
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
            D++V+IW V+    +K    LP  +  V+A+
Sbjct: 151 FDESVRIWDVKTGKCLK---TLPAHSDPVSAV 179

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 45  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 155 SDPVSAV 161

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 42  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 152 SDPVSAV 158

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 42  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 152 SDPVSAV 158

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 38  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 96
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 97  ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 147
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 148 SDPVSAV 154

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 35  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 93
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 94  ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 144
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 145 SDPVSAV 151

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 52  LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
           L GH   + S+     G+ +ASS     +A   I +W     K    +  H L ++ + +
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASS-----SADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
           S D NLL+S S D+   ++ +          + +   + H   ++ C++NP  +   +GS
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
            D++V+IW V+    +K    LP  +  V+A+
Sbjct: 149 FDESVRIWDVKTGKCLK---TLPAHSDPVSAV 177

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 45  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 155 SDPVSAV 161

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 44  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 102
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 103 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 153
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 154 SDPVSAV 160

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 45  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 155 SDPVSAV 161

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 40  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 98
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 99  ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 149
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 150 SDPVSAV 156

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 39  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 97
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 98  ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 148
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 149 SDPVSAV 155

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 39  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 97
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 98  ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 148
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 149 SDPVSAV 155

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 56  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 114
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 115 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 165
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 166 SDPVSAV 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 47  PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV 106
           PE + L GH + +  +       ++ S   A   A  ++W +E G ++    L+ H+ +V
Sbjct: 99  PEKYALSGHRSPVTRVIFHPVFSVMVS---ASEDATIKVWDYETGDFERT--LKGHTDSV 153
Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166
             I F H   LL S S D    ++  Q        ++ I     H   + S S  P G  
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 167 FATGSRDKTVKIWAVENKSSVK 188
             + SRDKT+K+W V+    VK
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVK 228

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 42  AASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 152 SDPVSAV 158

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 42  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAH 151
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 152 SDPVSAV 158

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77  AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
           A S+A   I +W     K    +  H L ++ + +S D NLL+S S D+   ++ +    
Sbjct: 42  ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
                 + +   + H   ++ C++NP  +   +GS D++V+IW V+    +K    LP  
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAH 151
Query: 197 NSSVTAL 203
           +  V+A+
Sbjct: 152 SDPVSAV 158

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 52  LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
           L GH + ++ +     G+ +AS+   ++     + LW     + +  L  HS +V  + F
Sbjct: 53  LTGHSSSVWGVAFSPDGQTIASASDDKT-----VKLWNRNG-QLLQTLTGHSSSVRGVAF 106
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
           S D   + S S D+   ++   R G      QL+     H   +W  +++P G   A+ S
Sbjct: 107 SPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
Query: 172 RDKTVKIW 179
            DKTVK+W
Sbjct: 159 DDKTVKLW 166

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 50  HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
            +L GH + +  +     G+   S      +   E+ LW++ +  +  R   H+  V  +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSG-----SWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478
Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC---SWNPFGHE 166
            FS D+  ++S SRDR   ++       GE  Y +    E H+  + SC   S N     
Sbjct: 479 AFSLDNRQIVSASRDRTIKLW----NTLGECKYTISEGGEGHRDWV-SCVRFSPNTLQPT 533
Query: 167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226
             + S DKTVK+W + N   ++  LA      S  A+S        +    A G + GV+
Sbjct: 534 IVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVS-------PDGSLCASGGKDGVV 585
Query: 227 ELWSISVNR 235
            LW ++  +
Sbjct: 586 LLWDLAEGK 594

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 68   GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
            GK + SS      +  ++W W+ G +     LQ+H  TV   R   D  LL S S D   
Sbjct: 1022 GKTLISS---SEDSVIQVWNWQTGDYVF---LQAHQETVKDFRLLQDSRLL-SWSFDGTV 1074
Query: 128  SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
             V+ +  TG  E D+        H+  + SC+ +    +F++ S DKT KIW+ +  S +
Sbjct: 1075 KVWNV-ITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 188  KQILALPPFNSSV--TALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232
             +   L   N  V  +A S  G+        LA G ++G I +W++S
Sbjct: 1128 HE---LKGHNGCVRCSAFSLDGI-------LLATGDDNGEIRIWNVS 1164

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 94  KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151
           K + RL  + H+  V    FS D   + S   D+   VF  + TG   +D +      AH
Sbjct: 611 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AH 663
Query: 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211
           +  +  C+++      AT S DK VKIW   + ++ K +      +  V    +     +
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNCCHFTN---K 717
Query: 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271
            NH  LA G     ++LW ++     +      ++ N   RF P                
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSP---------------- 760
Query: 272 EKPKNSRTMQLASCGADNTVRVFQV 296
                     LASC AD T+R++ V
Sbjct: 761 ------DDELLASCSADGTLRLWDV 779

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 68   GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
            GK + SS      +  ++W W+ G +     LQ+H  TV   R   D  LL S S D   
Sbjct: 1015 GKTLISS---SEDSVIQVWNWQTGDYVF---LQAHQETVKDFRLLQDSRLL-SWSFDGTV 1067
Query: 128  SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
             V+ +  TG  E D+        H+  + SC+ +    +F++ S DKT KIW+ +  S +
Sbjct: 1068 KVWNV-ITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 188  KQILALPPFNSSV--TALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232
             +   L   N  V  +A S  G+        LA G ++G I +W++S
Sbjct: 1121 HE---LKGHNGCVRCSAFSLDGI-------LLATGDDNGEIRIWNVS 1157

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 94  KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151
           K + RL  + H+  V    FS D   + S   D+   VF  + TG   +D +      AH
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AH 656
Query: 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211
           +  +  C+++      AT S DK VKIW   + ++ K +      +  V    +     +
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNCCHFTN---K 710
Query: 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271
            NH  LA G     ++LW ++     +      ++ N   RF P                
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSP---------------- 753
Query: 272 EKPKNSRTMQLASCGADNTVRVFQV 296
                     LASC AD T+R++ V
Sbjct: 754 ------DDELLASCSADGTLRLWDV 772

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 87  LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV-FAIQRTGTGEIDYQLI 145
           L+  GS     +L  H   +TQ++++ + +LL S S+D   SV +++     G +D    
Sbjct: 16  LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD---- 71
Query: 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
                H   IWS   + F     TGS D ++K+W V N   V
Sbjct: 72  ----GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 85  IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF-AIQRTGTGEIDYQ 143
           + ++E   +K       H+  V  +R++ D +L  S   D    ++  +  T TG  +  
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181
            + +  AH   ++  +W+P G + A+ S DKT+KIW V
Sbjct: 232 SL-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 98  RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157
           RL+ HS  V+ +  S++ N  +S S D    ++ +Q    G+  Y+ +     H + + S
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ---NGQCQYKFLG----HTKDVLS 114
Query: 158 CSWNPFGHEFATGSRDKTVKIWAVENK 184
            +++P   +  +G RD  +++W V+ +
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGE 141

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
           H   + +++F   D NLLLSVS+D    ++ IQ      I        E H+  + S  +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 168
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
           +  G +  +   D ++K+W +                    N+  + Q +  P F++   
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 228
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
             ++V   R      L+   E+ ++  W       +D+    PS +N+ I  RFD   C 
Sbjct: 229 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 286
Query: 260 V 260
           +
Sbjct: 287 I 287

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
           H   + +++F   D NLLLSVS+D    ++ IQ      I        E H+  + S  +
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 205
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
           +  G +  +   D ++K+W +                    N+  + Q +  P F++   
Sbjct: 206 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 265
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
             ++V   R      L+   E+ ++  W       +D+    PS +N+ I  RFD   C 
Sbjct: 266 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 323
Query: 260 V 260
           +
Sbjct: 324 I 324

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
           H   + +++F   D NLLLSVS+D    ++ IQ      I        E H+  + S  +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 168
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
           +  G +  +   D ++K+W +                    N+  + Q +  P F++   
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 228
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
             ++V   R      L+   E+ ++  W       +D+    PS +N+ I  RFD   C 
Sbjct: 229 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 286
Query: 260 V 260
           +
Sbjct: 287 I 287

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
           H   + +++F   D NLLLSVS+D    ++ IQ      I        E H+  + S  +
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 164
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
           +  G +  +   D ++K+W +                    N+  + Q +  P F++   
Sbjct: 165 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 224
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
             ++V   R      L+   E+ ++  W       +D+    PS +N+ I  RFD   C 
Sbjct: 225 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 282
Query: 260 V 260
           +
Sbjct: 283 I 283

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
           H   + +++F   D NLLLSVS+D    ++ IQ      I        E H+  + S  +
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 169
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
           +  G +  +   D ++K+W +                    N+  + Q +  P F++   
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
             ++V   R      L+   E+ ++  W       +D+    PS +N+ I  RFD   C 
Sbjct: 230 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 287
Query: 260 V 260
           +
Sbjct: 288 I 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.35
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.12
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.96
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.89
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.89
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.75
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.63
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.56
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.55
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.54
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.52
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.28
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.2
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.14
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.05
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.01
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.88
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.7
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.53
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.53
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.45
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.01
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.86
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.82
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.8
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.71
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.56
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.51
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.47
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.45
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.35
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.01
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.85
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.8
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.66
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.84
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.81
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.64
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.28
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.43
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.14
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.79
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.66
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.58
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.34
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.81
3ott_A	758	Two-component system sensor histidine kinase; beta	86.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.67
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	82.43

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-42  Score=285.63  Aligned_cols=252  Identities=21%  Similarity=0.332  Sum_probs=223.4

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      .++.++.|+..+++.+..+.+|.+.|.++.|. |.+..++++      ++|+     .+..+.+|...|.+++|+|++.+
T Consensus       128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~  206 (410)
T 1vyh_C          128 EDATIKVWDYETGDFERTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH  206 (410)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred             CCCeEEEEECCCCcEEEEEeccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence            35678899999999999999999999999999 556666665      4663     46778899999999999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      |++++.     |+.|++||+.+++.+..+.+|...|.++.|+|++.+|++++.|+.|++||+..       ......+..
T Consensus       207 l~s~s~-----D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~  274 (410)
T 1vyh_C          207 IVSASR-----DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-------KECKAELRE  274 (410)
T ss_dssp             EEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------CCEEEEECC
T ss_pred             EEEEeC-----CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-------CceeeEecC
Confidence            999964     99999999999999999999999999999999999999999999999999987       556777889


Q ss_pred             cCCceEEEEEccC--------------------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          151 HKRIIWSCSWNPF--------------------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       151 ~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      |...|.+++|+|+                    +.+|++|+.|+.|++||++++..+.   .+.+|...|.+++|+|++ 
T Consensus       275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g-  350 (410)
T 1vyh_C          275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGG-  350 (410)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSS-
T ss_pred             CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCC-
Confidence            9999999999996                    6689999999999999999988776   666799999999999998 


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          .+|++|+.|+.|++||+.+.             .++..+   .+|...|++++|+|++       .+|++++.|++
T Consensus       351 ----~~l~s~s~D~~i~vwd~~~~-------------~~~~~~---~~h~~~v~~l~~~~~~-------~~l~sgs~D~~  403 (410)
T 1vyh_C          351 ----KFILSCADDKTLRVWDYKNK-------------RCMKTL---NAHEHFVTSLDFHKTA-------PYVVTGSVDQT  403 (410)
T ss_dssp             ----SCEEEEETTTEEEEECCTTS-------------CCCEEE---ECCSSCEEEEEECSSS-------SCEEEEETTSE
T ss_pred             ----CEEEEEeCCCeEEEEECCCC-------------ceEEEE---cCCCCcEEEEEEcCCC-------CEEEEEeCCCc
Confidence                79999999999999999766             444443   4699999999999999       89999999999


Q ss_pred             EEEeEec
Q 037555          291 VRVFQVN  297 (298)
Q Consensus       291 i~iw~~~  297 (298)
                      |++|+++
T Consensus       404 i~vW~~r  410 (410)
T 1vyh_C          404 VKVWECR  410 (410)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=272.56  Aligned_cols=252  Identities=17%  Similarity=0.227  Sum_probs=220.4

Q ss_pred             ccccceeeeecCcc--cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555            3 AATRETVERHGNDG--LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      ++.++.++..++..  ...+.+|...|.++.+.+ ....++++      ++|+     .+..+..|...+.+++|+|+++
T Consensus        57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~  135 (321)
T 3ow8_A           57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ  135 (321)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred             CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC
Confidence            55677787776653  446899999999999984 45555554      4664     4677888999999999999999


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      +|++++     .++.|++|++++++....+..|...|.+++|+|++++|++++.||.|++||+++       .+.+..+.
T Consensus       136 ~l~~g~-----~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-------~~~~~~~~  203 (321)
T 3ow8_A          136 YLATGT-----HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-------GKLLHTLE  203 (321)
T ss_dssp             EEEEEC-----TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEEC
T ss_pred             EEEEEc-----CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-------CcEEEEEc
Confidence            999994     599999999999998888888999999999999999999999999999999987       56778888


Q ss_pred             ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      .|..+|.+++|+|++++|++++.|+.|++||+++.+...   .+.+|...|.+++|+|++     .+|++++.|+.|++|
T Consensus       204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~sp~~-----~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG---TLSGHASWVLNVAFCPDD-----THFVSSSSDKSVKVW  275 (321)
T ss_dssp             CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEE
T ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---EEcCCCCceEEEEECCCC-----CEEEEEeCCCcEEEE
Confidence            999999999999999999999999999999999887766   677899999999999998     799999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                      |+.++             .++..+   .+|...|.+++|+|++       .+|++++.|+.|++||+.+
T Consensus       276 d~~~~-------------~~~~~~---~~h~~~v~~v~~s~~g-------~~l~s~~~d~~i~vwd~p~  321 (321)
T 3ow8_A          276 DVGTR-------------TCVHTF---FDHQDQVWGVKYNGNG-------SKIVSVGDDQEIHIYDCPI  321 (321)
T ss_dssp             ETTTT-------------EEEEEE---CCCSSCEEEEEECTTS-------SEEEEEETTCCEEEEECC-
T ss_pred             eCCCC-------------EEEEEE---cCCCCcEEEEEECCCC-------CEEEEEeCCCeEEEEeCCC
Confidence            99876             555554   4699999999999999       8999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.9e-41  Score=267.61  Aligned_cols=242  Identities=15%  Similarity=0.252  Sum_probs=208.2

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      ...++.+|.+.|.++.|+ |.+..++++      ++|+     ++..+.+|..+|.+++|+|++++|++|+     .|+.
T Consensus         5 ~~~~~~~h~~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-----~d~~   78 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----DDFR   78 (304)
T ss_dssp             CEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-----TTSE
T ss_pred             eEEeecCCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-----CCCE
Confidence            456788999999999999 566666665      4664     4678889999999999999999999995     4999


Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-C
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-F  163 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  163 (298)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++..      ......+.+|...|.+++|+| +
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------~~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT------TEEEEEECCCCSCEEEEEECTTC
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC------cchhhhhcccCCcEEEEEECCCC
Confidence            999999999999999999999999999999999999999999999999863      245667788999999999999 6


Q ss_pred             CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555          164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA  243 (298)
Q Consensus       164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  243 (298)
                      +..|++|+.|+.|++||+++......+  ...+...+..+.|+|..   ++.+|++|+.|+.|++||++++         
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~---~~~~l~s~s~D~~i~iWd~~~~---------  218 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTL--TTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQTK---------  218 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEE--ECCCTTCEEEEEECCST---TCCEEEEEETTSEEEEEETTTT---------
T ss_pred             CCEEEEEeCCCeEEEEECCCCCcccee--ccCCcCcEEEEEEEEcC---CCCEEEEEcCCCeEEEEeCCCC---------
Confidence            789999999999999999887665533  23466789999998742   1269999999999999999876         


Q ss_pred             CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          .++..   +.+|...|.+++|+|++       .+|++++.||+|++||++
T Consensus       219 ----~~~~~---~~~h~~~v~~~~~~p~~-------~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          219 ----SCVAT---LEGHMSNVSFAVFHPTL-------PIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             ----EEEEE---EECCSSCEEEEEECSSS-------SEEEEEETTSCEEEEETT
T ss_pred             ----cccee---eCCCCCCEEEEEECCCC-------CEEEEEcCCCeEEEEECC
Confidence                55555   44799999999999999       899999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-40  Score=269.36  Aligned_cols=250  Identities=16%  Similarity=0.213  Sum_probs=215.6

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC---------ceEEeccCCCceEEEEEcCC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP---------ESHKLYGHGNELFSLCCDHQ   67 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~h~~~v~~~~~s~~   67 (298)
                      ++.++.|+..+++.+..+..|...|..+.+. |.+..++++      .+|+         ....+.+|.+.|.++.|+++
T Consensus        76 Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  154 (340)
T 1got_B           76 DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD  154 (340)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET
T ss_pred             CCcEEEEECCCCCcceEeecCCccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC
Confidence            5677888888999999999999999999999 456666654      3442         34567899999999999988


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +. +++++     .|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++.       ......
T Consensus       155 ~~-l~s~s-----~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-------~~~~~~  221 (340)
T 1got_B          155 NQ-IVTSS-----GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-------GMCRQT  221 (340)
T ss_dssp             TE-EEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------CSEEEE
T ss_pred             Cc-EEEEE-----CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-------CeeEEE
Confidence            76 67774     489999999999999999999999999999999999999999999999999987       556778


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      +..|...|.+++|+|++++|++++.||.|++||++..+.+..+ ....+...|.+++|+|++     .+|++|+.|+.|+
T Consensus       222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~g-----~~l~~g~~d~~i~  295 (340)
T 1got_B          222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSG-----RLLLAGYDDFNCN  295 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTS-----SEEEEEETTSEEE
T ss_pred             EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-ccCCcccceEEEEECCCC-----CEEEEECCCCeEE
Confidence            8899999999999999999999999999999999987766533 222344579999999998     7999999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +||+.+.             .....   +.+|...|.+++|+|++       .+|++++.|+.|++||
T Consensus       296 vwd~~~~-------------~~~~~---~~~h~~~v~~~~~s~dg-------~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          296 VWDALKA-------------DRAGV---LAGHDNRVSCLGVTDDG-------MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTTC-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSCEEEEC
T ss_pred             EEEcccC-------------cEeeE---eecCCCcEEEEEEcCCC-------CEEEEEcCCccEEecC
Confidence            9998765             44444   44799999999999999       8999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=270.70  Aligned_cols=233  Identities=19%  Similarity=0.249  Sum_probs=190.7

Q ss_pred             cCCCCCceeeeccCCCccccccc------CCCCc---------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH------TLWPE---------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      ..+...|.++.|.|. . .++++      ++|+.         ...+.+|.+.|++++|+|+|++|++|+.     |+.|
T Consensus        79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i  151 (344)
T 4gqb_B           79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICI  151 (344)
T ss_dssp             EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCE
T ss_pred             eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeE
Confidence            345667899999854 3 33333      56742         2335589999999999999999999954     8999


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEcc
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNP  162 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~  162 (298)
                      ++||+.+++.+..+.+|...|.+++|+|++. +|++++.|+.|++||++...       ....+  ..+...+.+++|+|
T Consensus       152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-------PASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-------CEEECC----CCCEEEEEECS
T ss_pred             EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-------eeeeeecceeeccceeeeecC
Confidence            9999999999999999999999999999874 78999999999999998743       33333  34556789999999


Q ss_pred             C-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          163 F-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       163 ~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      + +++|++|+.||.|++||+++++.+.   .+.+|...|++++|+|++.    .+|++|+.|+.|+|||++++       
T Consensus       225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~fsp~g~----~~lasgs~D~~i~vwd~~~~-------  290 (344)
T 4gqb_B          225 QQSEVFVFGDENGTVSLVDTKSTSCVL---SSAVHSQCVTGLVFSPHSV----PFLASLSEDCSLAVLDSSLS-------  290 (344)
T ss_dssp             SCTTEEEEEETTSEEEEEESCC--CCE---EEECCSSCEEEEEECSSSS----CCEEEEETTSCEEEECTTCC-------
T ss_pred             CCCcceEEeccCCcEEEEECCCCcEEE---EEcCCCCCEEEEEEccCCC----eEEEEEeCCCeEEEEECCCC-------
Confidence            5 5788999999999999999988877   6668999999999999874    68999999999999998765       


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            +.. .   +.+|...|++++|+|++.      .+|+++|.|++|++|++.
T Consensus       291 ------~~~-~---~~~H~~~V~~v~~sp~~~------~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          291 ------ELF-R---SQAHRDFVRDATWSPLNH------SLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ------EEE-E---ECCCSSCEEEEEECSSST------TEEEEEETTSCEEEEECC
T ss_pred             ------cEE-E---EcCCCCCEEEEEEeCCCC------eEEEEEcCCCeEEEEECC
Confidence                  332 2   457999999999999983      578899999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-40  Score=276.39  Aligned_cols=243  Identities=23%  Similarity=0.398  Sum_probs=213.1

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      ....+.+|.+.|.++.|.| .+..++++      ++|+     ....+.+|.+.|++++|+|++++|++|+.     |+.
T Consensus       100 ~~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-----D~~  173 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-----DMT  173 (410)
T ss_dssp             CSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-----TSC
T ss_pred             ceEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC-----CCe
Confidence            4567889999999999994 55566665      4664     46889999999999999999999999964     999


Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG  164 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (298)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++       ...+..+.+|...|.++.|+|++
T Consensus       174 i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-------GYCVKTFTGHREWVRMVRPNQDG  246 (410)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEeCCCccEEEEEECCCC
Confidence            99999999999999999999999999999999999999999999999987       56677888999999999999999


Q ss_pred             CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc---------------CCccEEEEeecCCcEEEE
Q 037555          165 HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ---------------KNHGFLAVGMESGVIELW  229 (298)
Q Consensus       165 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~l~~g~~dg~i~vw  229 (298)
                      .+|++++.|+.|++||+++.+...   .+..|...|.+++|+|++..               ..+.+|++|+.|+.|++|
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw  323 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  323 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence            999999999999999999887766   66779999999999996320               013689999999999999


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |++++             .++..   +.+|...|.+++|+|++       .+|++++.|+.|++||++
T Consensus       324 d~~~~-------------~~~~~---~~~h~~~v~~v~~~~~g-------~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          324 DVSTG-------------MCLMT---LVGHDNWVRGVLFHSGG-------KFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             ETTTT-------------EEEEE---EECCSSCEEEEEECSSS-------SCEEEEETTTEEEEECCT
T ss_pred             ECCCC-------------ceEEE---EECCCCcEEEEEEcCCC-------CEEEEEeCCCeEEEEECC
Confidence            99876             55554   34699999999999999       899999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=267.84  Aligned_cols=241  Identities=18%  Similarity=0.290  Sum_probs=209.6

Q ss_pred             CcccccccCCCCCceeeeccCC---Cccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPP---IEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      |.....+.+|.+.|.++.+.|.   .+..++++      ++|+       ....+.+|...|.+++|++++.++++++. 
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-  100 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-  100 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence            4455667899999999999863   34566665      5774       23467899999999999999999999954 


Q ss_pred             CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                          |+.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|+++.       ......+..|...|.+
T Consensus       101 ----D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-------~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          101 ----DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-------GKKEYSLDTRGKFILS  169 (321)
T ss_dssp             ----TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-------CSEEEEEECSSSCEEE
T ss_pred             ----CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-------CceeEEecCCCceEEE
Confidence                99999999999999999998999999999999999999999999999999987       4456677788899999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555          158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN  237 (298)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  237 (298)
                      ++|+|++++|++++.||.|++||+++++.+.   .+.+|..+|.+++|+|++     .+|++|+.|+.|++||++..   
T Consensus       170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~spd~-----~~l~s~s~dg~i~iwd~~~~---  238 (321)
T 3ow8_A          170 IAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDS-----QLLVTASDDGYIKIYDVQHA---  238 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECTTS-----CEEEEECTTSCEEEEETTTC---
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcCCC-----CEEEEEcCCCeEEEEECCCc---
Confidence            9999999999999999999999999987766   677899999999999998     79999999999999999865   


Q ss_pred             cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                .....   +.+|...|.+++|+|++       .+|++++.|++|++||++
T Consensus       239 ----------~~~~~---~~~h~~~v~~~~~sp~~-------~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          239 ----------NLAGT---LSGHASWVLNVAFCPDD-------THFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             ----------CEEEE---ECCCSSCEEEEEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred             ----------ceeEE---EcCCCCceEEEEECCCC-------CEEEEEeCCCcEEEEeCC
Confidence                      44444   45799999999999999       899999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-40  Score=271.45  Aligned_cols=254  Identities=17%  Similarity=0.237  Sum_probs=206.9

Q ss_pred             cccccceeeeecCccccc----ccCCCCCceeeeccCCCccccccc-----CCCCc---------eEEeccCCCceEEEE
Q 037555            2 YAATRETVERHGNDGLDT----LESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---------SHKLYGHGNELFSLC   63 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~h~~~v~~~~   63 (298)
                      |++.++.++..++.....    ..+|...|.++.|.|+ +..++..     ++|+.         .....+|.+.|++++
T Consensus        68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~  146 (357)
T 4g56_B           68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS  146 (357)
T ss_dssp             CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred             ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence            777788888777765443    3578899999999965 4444333     46742         234458999999999


Q ss_pred             EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccce
Q 037555           64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (298)
                      |+|++++|++++.     |+.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++||++....     
T Consensus       147 ~spdg~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-----  216 (357)
T 4g56_B          147 VFSDGTQAVSGGK-----DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-----  216 (357)
T ss_dssp             ECSSSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-----
T ss_pred             ECCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-----
Confidence            9999999999954     89999999999999999999999999999999875 789999999999999987432     


Q ss_pred             eeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          143 QLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      ........+...+.+++|+|+ +.+|++|+.|+.|++||+++++...   .+..|...|++++|+|++.    .+|++|+
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~l~~sp~~~----~~lasgs  289 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ---TSAVHSQNITGLAYSYHSS----PFLASIS  289 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE---EECCCSSCEEEEEECSSSS----CCEEEEE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE---EEeccceeEEEEEEcCCCC----CEEEEEe
Confidence            112233456778999999997 5689999999999999999988777   6778899999999999874    6899999


Q ss_pred             cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-HEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|+.|+|||++++             +.+..    .+|...|++|+|+| ++       .+|+|++.|++|++|++.
T Consensus       290 ~D~~i~iwd~~~~-------------~~~~~----~~H~~~V~~vafsP~d~-------~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          290 EDCTVAVLDADFS-------------EVFRD----LSHRDFVTGVAWSPLDH-------SKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             TTSCEEEECTTSC-------------EEEEE----CCCSSCEEEEEECSSST-------TEEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEECCCC-------------cEeEE----CCCCCCEEEEEEeCCCC-------CEEEEEcCCCeEEEEECC
Confidence            9999999999876             44433    26999999999998 66       799999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-39  Score=263.03  Aligned_cols=254  Identities=20%  Similarity=0.279  Sum_probs=208.4

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      ...++.+|.+.|..+.+.|.....++++      ++|+          ++..+.+|...|.+++|+|++++|++++.   
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~---   85 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW---   85 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC---
Confidence            4567899999999999996666667665      4674          25678899999999999999999999964   


Q ss_pred             CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                        |+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++.        ..+..+.+|...|.++.
T Consensus        86 --D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--------~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           86 --DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--------CEEEEECCCSSCEEEEE
T ss_pred             --CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeEEEEeccCCcEEEEE
Confidence              99999999999999999999999999999999999999999999999999863        45677788999999999


Q ss_pred             EccC------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          160 WNPF------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       160 ~~~~------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      |.|.      +..|++++.|+.|++||+++.+...   .+.+|...|.+++|+|++     .+|++|+.||.|++||+.+
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~sp~g-----~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASPDG-----TLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTTEEEE---EECCCCSCEEEEEECTTS-----SEEEEEETTCEEEEEETTT
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe---eecCCCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEECCC
Confidence            9985      4489999999999999999877665   667899999999999998     7999999999999999976


Q ss_pred             cccccccCCCC---------CC------------------cceeeeecc-----CCcccceEEEEEeecCCCCCCCcceE
Q 037555          234 NRTNDVSTPAP---------ST------------------ANIIIRFDP-----FACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       234 ~~~~~~~~~~~---------~~------------------~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .+.........         ..                  ......+..     ...|...+.+++|+|++       .+
T Consensus       228 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-------~~  300 (319)
T 3frx_A          228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-------QT  300 (319)
T ss_dssp             TEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-------SE
T ss_pred             CcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-------CE
Confidence            54322111100         00                  000111110     12355678999999999       89


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      |++++.|+.|++||+.
T Consensus       301 l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          301 LFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEETTSCEEEEEEE
T ss_pred             EEEeecCceEEEEEEe
Confidence            9999999999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-39  Score=265.19  Aligned_cols=251  Identities=16%  Similarity=0.213  Sum_probs=216.0

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCC-----------CceEEeccCCCceEEEEEc
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLW-----------PESHKLYGHGNELFSLCCD   65 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~-----------~~~~~~~~h~~~v~~~~~s   65 (298)
                      ++.++.|+..+++....+..|...|..+.|. |.+..++++      .+|           .....+.+|...|.+++|+
T Consensus        85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  163 (354)
T 2pbi_B           85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT  163 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCcceEEecCCCCEEEEEEC-CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe
Confidence            5667888888899999999999999999999 556666554      233           2356777899999999999


Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ  143 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (298)
                      |++..|++++.     |++|++||+++++.+..+.+|...|.+++|+|  ++++|++++.||.|++||+++       ..
T Consensus       164 ~~~~~l~t~s~-----D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-------~~  231 (354)
T 2pbi_B          164 NSDMQILTASG-----DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-------GQ  231 (354)
T ss_dssp             SSSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-------CC
T ss_pred             CCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-------Cc
Confidence            99999999954     99999999999999999999999999999988  568999999999999999987       55


Q ss_pred             eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                      .+..+..|...|.+++|+|++++|++++.|++|++||++..+....+ ....+...+.+++|+|++     .+|++|+.|
T Consensus       232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~g-----~~l~~g~~d  305 (354)
T 2pbi_B          232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLSG-----RLLFAGYND  305 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTS-----SEEEEEETT
T ss_pred             EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCCC-----CEEEEEECC
Confidence            67788899999999999999999999999999999999987665422 222334578999999998     799999999


Q ss_pred             CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +.|++||+.++             ..+..   +.+|...|++++|+|++       .+|++++.|++|++|+
T Consensus       306 ~~i~vwd~~~~-------------~~~~~---l~~h~~~v~~l~~spdg-------~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          306 YTINVWDVLKG-------------SRVSI---LFGHENRVSTLRVSPDG-------TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTTC-------------SEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTSEEEEEC
T ss_pred             CcEEEEECCCC-------------ceEEE---EECCCCcEEEEEECCCC-------CEEEEEcCCCCEEecC
Confidence            99999999766             44444   45799999999999999       8999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-39  Score=259.58  Aligned_cols=258  Identities=22%  Similarity=0.388  Sum_probs=197.4

Q ss_pred             ccccceeeeecCc--ccccc-cC-CCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceE
Q 037555            3 AATRETVERHGND--GLDTL-ES-VPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELF   60 (298)
Q Consensus         3 ~~~~~~~~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~   60 (298)
                      ++.++.++..++.  .+..+ .+ |...|.++.|.| .+..++++      ++|+            ....+.+|...|+
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~  111 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK  111 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence            4556677766653  34445 34 999999999994 56666655      4663            2456789999999


Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      +++|+|++++|++++.     |+.|++||+..    .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.....
T Consensus       112 ~v~~sp~g~~las~s~-----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~  186 (330)
T 2hes_X          112 GVAWSNDGYYLATCSR-----DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD  186 (330)
T ss_dssp             EEEECTTSCEEEEEET-----TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEeC-----CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9999999999999964     99999999943    24567788999999999999999999999999999999987532


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcc-----eeeeeecCC-CCCceEEEEEeec
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSS-----VKQILALPP-FNSSVTALSWVGL  208 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~  208 (298)
                           ...+..+.+|...|.+++|+|+  +.+|++++.|++|++||++....     ......+.. |...|.+++|++.
T Consensus       187 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~  261 (330)
T 2hes_X          187 -----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN  261 (330)
T ss_dssp             -----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred             -----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC
Confidence                 3567788899999999999998  67899999999999999976421     011224444 8889999999965


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc-eEEEEEeec--CCCCCCCcceEEEee
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA-AVNRMAWKT--HEKPKNSRTMQLASC  285 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~~l~s~  285 (298)
                      +      +|++++.||.|++|+...+..           .....  ...+|.. .|.+++|+|  ++       .+|+++
T Consensus       262 ~------~l~s~~~dg~v~iw~~~~~~~-----------~~~~~--~~~~h~~~~v~~v~~~~~~~~-------~~las~  315 (330)
T 2hes_X          262 G------LIASVGADGVLAVYEEVDGEW-----------KVFAK--RALCHGVYEINVVKWLELNGK-------TILATG  315 (330)
T ss_dssp             S------CEEEEETTSCEEEEEEETTEE-----------EEEEE--ESCTTTTSCEEEEEEC------------CCEEEE
T ss_pred             C------EEEEEeCCCEEEEEEcCCCce-----------EEEec--cccccccceEEEEEEecCCCc-------eEEEEe
Confidence            4      799999999999999875410           11111  1346776 899999999  56       799999


Q ss_pred             eCCCcEEEeEec
Q 037555          286 GADNTVRVFQVN  297 (298)
Q Consensus       286 ~~d~~i~iw~~~  297 (298)
                      +.||+|++|+++
T Consensus       316 s~Dg~v~~W~~~  327 (330)
T 2hes_X          316 GDDGIVNFWSLE  327 (330)
T ss_dssp             ETTSEEEEEEC-
T ss_pred             cCCCcEEEEEec
Confidence            999999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-38  Score=254.72  Aligned_cols=250  Identities=19%  Similarity=0.297  Sum_probs=201.1

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTA   81 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~   81 (298)
                      +..+.+|.+.|..++|+ |.+..++++      ++|+       .+.++.+|.++|++++|+++  +++|++++.     
T Consensus         2 ~~~~~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-----   75 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-----   75 (297)
T ss_dssp             CEECCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred             ceeccCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-----
Confidence            34578999999999999 667777765      4563       35788999999999999864  899999954     


Q ss_pred             ceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                      |++|++||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++....     .....+..|...|.+
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-----~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNS  150 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-----BCCEEEECCSSCEEE
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-----eeeeeeecccCccce
Confidence            9999999998774  45567789999999999997  88999999999999999986421     113456789999999


Q ss_pred             EEEccC-------------CCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          158 CSWNPF-------------GHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       158 ~~~~~~-------------~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                      ++|+|+             +++|++|+.|+.|++||+++..... ....+.+|...|.+++|+|++.  .+.+|++++.|
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~--~~~~las~s~D  228 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL--LRSYMASVSQD  228 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS--SSEEEEEEETT
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC--CceEEEEEECC
Confidence            999996             4799999999999999998765322 2336778999999999999840  11699999999


Q ss_pred             CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.|++||++.....           ..........|...|.+++|+|++       .+|++++.|+.|++|+.+
T Consensus       229 ~~v~iWd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g-------~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          229 RTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSS-------CCEEEEETTSCEEEEEEC
T ss_pred             CcEEEEEeCCCCCc-----------cceeeeecccCCCcEEEEEECCCC-------CEEEEEcCCCcEEEEEEC
Confidence            99999999764211           111111124678899999999999       899999999999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=261.12  Aligned_cols=236  Identities=17%  Similarity=0.206  Sum_probs=191.4

Q ss_pred             cCCCCCceeeeccCCCccccccc-----CCCCce----------------EEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH-----TLWPES----------------HKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~----------------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      ..|+..|.++.|+ |++..++.+     ++|+..                .....|...|.+++|+|++ .|++++    
T Consensus        27 ~~~~~~v~~~~fs-~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s----  100 (344)
T 4gqb_B           27 ACMERQLEAARYR-SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVAS----  100 (344)
T ss_dssp             SSCCSEEEEEEEC-TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEE----
T ss_pred             ccccCCEEEEEEC-CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEE----
Confidence            4567789999999 566666654     577521                1222356789999999986 566774    


Q ss_pred             CCceEEEEEEcCCceeeec----cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555           80 TAAAEIWLWEVGSWKAMGR----LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII  155 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  155 (298)
                       .||.|+|||+.+++.+..    +.+|...|++++|+|++++|++++.|++|++||+.+       ...+..+.+|...|
T Consensus       101 -~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-------~~~~~~~~~h~~~V  172 (344)
T 4gqb_B          101 -DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-------QVVLSSYRAHAAQV  172 (344)
T ss_dssp             -TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCE
T ss_pred             -CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEcCcCCce
Confidence             499999999998876543    347999999999999999999999999999999987       67788899999999


Q ss_pred             EEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          156 WSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       156 ~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+++|+|++ .+|++++.|+.|++||+++++....+ ....+...+.+++|+|.+.    .+|++|+.||.|++||++++
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~----~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQS----EVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECSSCT----TEEEEEETTSEEEEEESCC-
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeeecCCCC----cceEEeccCCcEEEEECCCC
Confidence            999999987 57899999999999999998877633 2234566799999999763    78999999999999999877


Q ss_pred             ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                   +++..   +.+|...|++++|+|++.      .+|++++.|++|+|||++
T Consensus       248 -------------~~~~~---~~~h~~~v~~v~fsp~g~------~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          248 -------------SCVLS---SAVHSQCVTGLVFSPHSV------PFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             --------------CCEE---EECCSSCEEEEEECSSSS------CCEEEEETTSCEEEECTT
T ss_pred             -------------cEEEE---EcCCCCCEEEEEEccCCC------eEEEEEeCCCeEEEEECC
Confidence                         44444   447999999999999973      589999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=257.97  Aligned_cols=259  Identities=21%  Similarity=0.303  Sum_probs=208.2

Q ss_pred             CcccccccCCCC-CceeeeccCCCccccccc------CCCCc-------eE-EeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555           14 NDGLDTLESVPD-AVPAVFTEPPIEDQLAWH------TLWPE-------SH-KLYGHGNELFSLCCDHQGKLVASSCKAQ   78 (298)
Q Consensus        14 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~------~~~~~-------~~-~~~~h~~~v~~~~~s~~~~~l~~~~~~~   78 (298)
                      -+.+..+.+|++ .|..+.|+ |.+..++++      ++|+.       .. ...+|...|.+++|+|++++|++++.  
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~--   81 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF--   81 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEEeeeecCCCCCcEEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--
Confidence            346778899998 89999999 567777765      56742       11 23689999999999999999999964  


Q ss_pred             CCCceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           79 STAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                         |+.|++|++..+  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.....    ...+..+..|...|.
T Consensus        82 ---D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           82 ---DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----YECVSVLNSHTQDVK  154 (345)
T ss_dssp             ---TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----EEEEEEECCCCSCEE
T ss_pred             ---CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----eEEEEEecCcCCCeE
Confidence               899999998765  45677889999999999999999999999999999999986432    345677788999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      +++|+|++++|++++.|+.|++||++..... ....+.+|...|.+++|+|++     .+|++|+.|+.|++|+......
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-~~~~~~~h~~~v~~l~~sp~g-----~~l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEEEECTTC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCCEE-EEEEecCCCCceEEEEECCCC-----CEEEEEeCCCeEEEeccccCCC
Confidence            9999999999999999999999999876532 223677899999999999998     7999999999999999865432


Q ss_pred             ccccC--CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          237 NDVST--PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .....  .....+.++..+.  ..|...|.+++|+|++       ..|++++.|+.|++|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~-------~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLT-------GALATACGDDAIRVFQED  282 (345)
T ss_dssp             TTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTT-------CCEEEEETTSCEEEEEEC
T ss_pred             CccceeeccCCccceeEEec--CCCCCcEEEEEEecCC-------CEEEEEeCCCeEEEEEeC
Confidence            21111  0111112233322  2388899999999999       899999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-38  Score=255.95  Aligned_cols=254  Identities=19%  Similarity=0.267  Sum_probs=195.4

Q ss_pred             cCcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEe-cc-CCCceEEEEEcCCCCEEEeEecc
Q 037555           13 GNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKL-YG-HGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus        13 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~-~~-h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      +.+.+..+.+|.+.|.++.+.+.   .++++      ++|+       ....+ .+ |...|.+++|+|++++|++++. 
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-   78 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-   78 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred             ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence            34567789999999999999853   55554      3553       23344 34 9999999999999999999964 


Q ss_pred             CCCCceEEEEEEcCC-------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           78 QSTAAAEIWLWEVGS-------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                          |+.|++|++..       .+.+..+.+|...|.+++|+|++++|++++.|+.|++||++.....   ...+..+..
T Consensus        79 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---~~~~~~~~~  151 (330)
T 2hes_X           79 ----DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---YECISVLQE  151 (330)
T ss_dssp             ----TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC---CEEEEEECC
T ss_pred             ----CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC---eEEEEEecc
Confidence                89999999853       3456678899999999999999999999999999999999532110   355677889


Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      |...|.+++|+|++++|++++.|+.|++||..+... ..+..+.+|...|.+++|+|++.   +.+|++|+.|+.|++||
T Consensus       152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~---~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEG---VFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSS---SCEEEEEETTSCEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCC---eeEEEEEeCCCeEEEEE
Confidence            999999999999999999999999999999876521 22236778999999999999831   15899999999999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCC-cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFA-CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++.......        ........+. .|...|.+++|++++        +|++++.||.|++|++.
T Consensus       228 ~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~s~~~--------~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          228 YMGDDEDDQ--------QEWVCEAILPDVHKRQVYNVAWGFNG--------LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEECTTSC--------EEEEEEEECCSCCSSCEEEEEECTTS--------CEEEEETTSCEEEEEEE
T ss_pred             ecCCCcccc--------ceeEEeeecccccccceEEEEEcCCC--------EEEEEeCCCEEEEEEcC
Confidence            986532110        1111111233 388999999999764        89999999999999963

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=257.55  Aligned_cols=213  Identities=23%  Similarity=0.356  Sum_probs=184.4

Q ss_pred             ceEEeccCCC-ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee---ccccccccEEEEEEcCCCCEEEEEeC
Q 037555           48 ESHKLYGHGN-ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG---RLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        48 ~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      .+.++.+|.. .|.+++|+|+|++||+|+.     |+.|+|||+.++....   ...+|...|.+++|+|++++|++++.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~-----D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGG-----DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEET-----TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcC-----CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            4678889998 9999999999999999954     9999999998775432   23679999999999999999999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      |+.+++|++....     ...+..+.+|...|.+++|+|++++|++++.|+.|++||++.......+..+..|...|.++
T Consensus        82 D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           82 DATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             TSCEEEEEECCC------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             CCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence            9999999987632     35677888999999999999999999999999999999998876555555677899999999


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      +|+|++     .+|++|+.|+.|++||.+....           .+...   +.+|...|++++|+|++       .+|+
T Consensus       157 ~~~p~~-----~~l~s~s~d~~i~~w~~~~~~~-----------~~~~~---~~~h~~~v~~l~~sp~g-------~~l~  210 (345)
T 3fm0_A          157 VWHPSQ-----ELLASASYDDTVKLYREEEDDW-----------VCCAT---LEGHESTVWSLAFDPSG-------QRLA  210 (345)
T ss_dssp             EECSSS-----SCEEEEETTSCEEEEEEETTEE-----------EEEEE---ECCCSSCEEEEEECTTS-------SEEE
T ss_pred             EECCCC-----CEEEEEeCCCcEEEEEecCCCE-----------EEEEE---ecCCCCceEEEEECCCC-------CEEE
Confidence            999998     7999999999999999976411           12222   55799999999999999       8999


Q ss_pred             eeeCCCcEEEeEe
Q 037555          284 SCGADNTVRVFQV  296 (298)
Q Consensus       284 s~~~d~~i~iw~~  296 (298)
                      +++.|++|++|++
T Consensus       211 s~s~D~~v~iW~~  223 (345)
T 3fm0_A          211 SCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEeCCCeEEEecc
Confidence            9999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.1e-38  Score=256.78  Aligned_cols=241  Identities=15%  Similarity=0.217  Sum_probs=206.6

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      .+....+.+|.+.|.++.|. |.+..++++      ++|+     .+..+..|...|.+++|+|++++|++++.     |
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d  118 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----D  118 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----T
T ss_pred             chhheeecCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----C
Confidence            34566789999999999998 566666665      4664     46778899999999999999999999954     8


Q ss_pred             eEEEEEEcCCc----eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           83 AEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        83 ~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      +.|++|++.+.    +....+.+|...|.++.|++++ .+++++.|+.|++||+.+       ...+..+.+|...|.++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~-------~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIET-------GQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEE
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCC-------CcEEEEEcCCCCceEEE
Confidence            99999999765    3445678899999999999876 489999999999999987       56678888999999999


Q ss_pred             EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555          159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND  238 (298)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  238 (298)
                      +|+|++++|++|+.|+.|++||++++....   .+.+|...|.+++|+|++     .+|++|+.|+.|++||++..    
T Consensus       191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~d~~v~iwd~~~~----  258 (340)
T 1got_B          191 SLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNG-----NAFATGSDDATCRLFDLRAD----  258 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT----
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCeeEE---EEcCCcCCEEEEEEcCCC-----CEEEEEcCCCcEEEEECCCC----
Confidence            999999999999999999999999887766   677899999999999998     79999999999999999875    


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                               ..+..+. ...+...|.+++|+|++       .+|++++.|+.|++||+.
T Consensus       259 ---------~~~~~~~-~~~~~~~v~~~~~s~~g-------~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          259 ---------QELMTYS-HDNIICGITSVSFSKSG-------RLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             ---------EEEEEEC-CTTCCSCEEEEEECTTS-------SEEEEEETTSEEEEEETT
T ss_pred             ---------cEEEEEc-cCCcccceEEEEECCCC-------CEEEEECCCCeEEEEEcc
Confidence                     4443332 23345689999999999       899999999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-38  Score=253.87  Aligned_cols=212  Identities=17%  Similarity=0.233  Sum_probs=184.1

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..+++.+|.+.|++++|+|++++|++++.     |+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~-----dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLY-----SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcC-----CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            56789999999999999999999999954     9999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ++||+.+       ...+..+..|...|.+++|+|++++|++|+.|++|++||+++.....  ..+.+|...|.+++|+|
T Consensus        80 ~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           80 RVFNYNT-------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--EEECCCCSCEEEEEECT
T ss_pred             EEEECCC-------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--hhhcccCCcEEEEEECC
Confidence            9999987       56678889999999999999999999999999999999998764432  25678999999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      .+.    .+|++|+.|+.|++||++..             .....+  ..+|...|..+.|+|..     ++.+|++++.
T Consensus       151 ~~~----~~l~sgs~D~~v~iwd~~~~-------------~~~~~~--~~~~~~~v~~~~~~~~~-----~~~~l~s~s~  206 (304)
T 2ynn_A          151 KDP----STFASGCLDRTVKVWSLGQS-------------TPNFTL--TTGQERGVNYVDYYPLP-----DKPYMITASD  206 (304)
T ss_dssp             TCT----TEEEEEETTSEEEEEETTCS-------------SCSEEE--ECCCTTCEEEEEECCST-----TCCEEEEEET
T ss_pred             CCC----CEEEEEeCCCeEEEEECCCC-------------Ccccee--ccCCcCcEEEEEEEEcC-----CCCEEEEEcC
Confidence            542    79999999999999999765             222222  22466789999998742     1279999999


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      |++|++||++
T Consensus       207 D~~i~iWd~~  216 (304)
T 2ynn_A          207 DLTIKIWDYQ  216 (304)
T ss_dssp             TSEEEEEETT
T ss_pred             CCeEEEEeCC
Confidence            9999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-39  Score=267.59  Aligned_cols=259  Identities=15%  Similarity=0.214  Sum_probs=215.9

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceEEEE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELFSLC   63 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~~~~   63 (298)
                      +++.++.|+..+++.+..+..|...|..+.|. |.+..++++      ++|+            ....+.+|.+.|.++.
T Consensus        86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~  164 (380)
T 3iz6_a           86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ  164 (380)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCCTTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred             CCCeEEEEECCCCccceEEecCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence            46678899999999999999999999999998 566666665      3442            3456789999999999


Q ss_pred             EcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeecc-----ccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCC
Q 037555           64 CDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-----QSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        64 ~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      |+|+ +..|++|+     .|+.|++||+.+++.+..+     .+|...|.++.|++ ++++|++|+.|+.|++||++.. 
T Consensus       165 ~~~~~~~~l~s~s-----~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-  238 (380)
T 3iz6_a          165 YVPDQETRLITGS-----GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-  238 (380)
T ss_dssp             CCSSSSSCEEEEC-----TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-
T ss_pred             EecCCCCEEEEEC-----CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-
Confidence            9996 45788884     5999999999999887665     57999999999987 8899999999999999999743 


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC----CCCCceEEEEEeeccccC
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP----PFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~  212 (298)
                           ...+..+.+|...|.+++|+|++++|++++.||+|++||++++..+..+....    .+...|++++|+|++   
T Consensus       239 -----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---  310 (380)
T 3iz6_a          239 -----SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG---  310 (380)
T ss_dssp             -----CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS---
T ss_pred             -----CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC---
Confidence                 34567788999999999999999999999999999999999987765332211    122348999999999   


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                        .+|++|+.||.|++||+...             .....+.. ..+|...|++++|+|++       .+|++|+.|++|
T Consensus       311 --~~l~~g~~dg~i~vwd~~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D~~i  368 (380)
T 3iz6_a          311 --RLLFAGYSNGDCYVWDTLLA-------------EMVLNLGTLQNSHEGRISCLGLSSDG-------SALCTGSWDKNL  368 (380)
T ss_dssp             --SEEEEECTTSCEEEEETTTC-------------CEEEEECCSCSSCCCCCCEEEECSSS-------SEEEEECTTSCE
T ss_pred             --CEEEEEECCCCEEEEECCCC-------------ceEEEEecccCCCCCceEEEEECCCC-------CEEEEeeCCCCE
Confidence              79999999999999998765             44444322 25799999999999999       899999999999


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      ++|++.
T Consensus       369 ~iW~~~  374 (380)
T 3iz6_a          369 KIWAFS  374 (380)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.8e-38  Score=274.54  Aligned_cols=270  Identities=14%  Similarity=0.212  Sum_probs=215.7

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEE
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      .++.++..+++.+..+.+|.+.|.++.|+ |.+..++++      ++|+.       ...+.+|.++|.+++|+|++++|
T Consensus        40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l  118 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI  118 (611)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             EEEEecCCCcccCeEecCCCCceEEEEEC-CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence            44566667788899999999999999999 677778776      57752       35678999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      ++++.+. ...+.|++||.  ++....+.+|...|.+++|+|++. .|++++.|++|++||...       .+....+.+
T Consensus       119 ~~~~~~~-~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-------~~~~~~l~~  188 (611)
T 1nr0_A          119 AAVGEGR-ERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------FKFKSTFGE  188 (611)
T ss_dssp             EEEECCS-SCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-------BEEEEEECC
T ss_pred             EEEECCC-CceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-------CeEeeeecc
Confidence            9986521 11367888874  566778899999999999999986 699999999999999875       566778899


Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee----cCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA----LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      |...|.+++|+|++++|++++.|+.|++||+.+++....+..    ..+|...|.+++|+|++     .+|++++.|+.|
T Consensus       189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-----~~l~s~s~D~~v  263 (611)
T 1nr0_A          189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-----TKIASASADKTI  263 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----SEEEEEETTSEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-----CEEEEEeCCCeE
Confidence            999999999999999999999999999999998877652211    11689999999999998     799999999999


Q ss_pred             EEEEeeecccccccCCCCCCc-------------------cee--------eeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          227 ELWSISVNRTNDVSTPAPSTA-------------------NII--------IRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~-------------------~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      ++||+.+++............                   ..+        .....+.+|...|++++|+|++       
T Consensus       264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-------  336 (611)
T 1nr0_A          264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-------  336 (611)
T ss_dssp             EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------
T ss_pred             EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-------
Confidence            999998654322111000000                   000        0112245799999999999999       


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      .+|++++.|++|++||+.
T Consensus       337 ~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          337 KTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             SEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCcEEEEECC
Confidence            899999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-37  Score=253.62  Aligned_cols=257  Identities=19%  Similarity=0.266  Sum_probs=201.1

Q ss_pred             cccccccCCCCCceeeec-----cCCCccccccc------CCCCc------------eEEeccCCCceEEEEEcCCCCEE
Q 037555           15 DGLDTLESVPDAVPAVFT-----EPPIEDQLAWH------TLWPE------------SHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~------~~~~~------------~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      +....+.+|.+.|.++.+     .++.+..++++      ++|+.            ...+.+|...|.+++|+|++.+|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            456788999999999988     65567777776      46642            45688999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++++.     |+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+....     .........|
T Consensus        92 ~s~s~-----D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~  161 (343)
T 2xzm_R           92 ISSSW-----DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENH  161 (343)
T ss_dssp             EEEET-----TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSC
T ss_pred             EEEcC-----CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCC
Confidence            99954     9999999999999999999999999999999999999999999999999987311     1111112368


Q ss_pred             CCceEEEEEccCC----------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          152 KRIIWSCSWNPFG----------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       152 ~~~v~~~~~~~~~----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      ...|.+++|+|++          .+|++++.|+.|++||.. .....   .+.+|...|.+++|+|++     .+|++|+
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~---~~~~h~~~v~~~~~s~~g-----~~l~sgs  232 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY---TFKAHESNVNHLSISPNG-----KYIATGG  232 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE---EEECCSSCEEEEEECTTS-----SEEEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE---EEcCccccceEEEECCCC-----CEEEEEc
Confidence            8899999999986          789999999999999943 33333   556789999999999998     7999999


Q ss_pred             cCCcEEEEEeeecccccccC-C---------CCC-------Ccceee-------------eec--------cCCcccceE
Q 037555          222 ESGVIELWSISVNRTNDVST-P---------APS-------TANIII-------------RFD--------PFACHVAAV  263 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~-~---------~~~-------~~~~~~-------------~~~--------~~~~~~~~v  263 (298)
                      .|+.|++||+.......... .         .+.       ....+.             .+.        ...+|...|
T Consensus       233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  312 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC  312 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred             CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence            99999999994332111000 0         000       000000             110        012577889


Q ss_pred             EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+++|+|++       .+|++|+.||.|++|+++
T Consensus       313 ~~~~~sp~g-------~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          313 TSLAWNALG-------KKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEEEECSSS-------CCEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCC-------CeEEEecCCceEEEEEEE
Confidence            999999999       899999999999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-37  Score=247.32  Aligned_cols=222  Identities=18%  Similarity=0.297  Sum_probs=179.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ceeeeccccccccEEEEEEcC--CCCEEEEEeCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRD  124 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  124 (298)
                      +..+.+|.+.|++++|+|+|++||+|+.     |+.|+||++..  .+.+..+.+|...|.+++|+|  ++++|++++.|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~-----D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeC-----CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            3567899999999999999999999964     99999999974  466788899999999999986  38999999999


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      ++|++||+....     ...+..+..|...|.+++|+|+  +.+|++++.|+.|++||++....... ..+.+|...|.+
T Consensus        77 ~~v~iWd~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~  150 (297)
T 2pm7_B           77 GKVMIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNS  150 (297)
T ss_dssp             TEEEEEEBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEE
T ss_pred             CEEEEEEcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccce
Confidence            999999998642     2345566789999999999997  88999999999999999987643211 145578899999


Q ss_pred             EEEeecccc--------CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555          203 LSWVGLDRQ--------KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       203 ~~~~~~~~~--------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      ++|+|+...        ..+.+|++|+.|+.|++||+++..            ........+.+|...|.+++|+|++. 
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~------------~~~~~~~~l~~H~~~V~~v~~sp~~~-  217 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------QTYVLESTLEGHSDWVRDVAWSPTVL-  217 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTT------------TEEEEEEEECCCSSCEEEEEECCCCS-
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC------------ceEEEEEEecCCCCceEEEEECCCCC-
Confidence            999997310        012689999999999999998652            11112223567999999999999830 


Q ss_pred             CCCcceEEEeeeCCCcEEEeEec
Q 037555          275 KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         .+.+|++++.|++|++||++
T Consensus       218 ---~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          218 ---LRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---SSEEEEEEETTSCEEEEEES
T ss_pred             ---CceEEEEEECCCcEEEEEeC
Confidence               01799999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.5e-38  Score=257.30  Aligned_cols=238  Identities=17%  Similarity=0.196  Sum_probs=189.8

Q ss_pred             cccCCCCCceeeeccCCCccccccc-----CCCCc----------------eEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE----------------SHKLYGHGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~----------------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      ....|...|.++.|+ |++..++++     ++|+-                .....+|...|++++|+|++.+|+++   
T Consensus        37 ~p~~H~~~V~~v~fS-pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s---  112 (357)
T 4g56_B           37 APACMEVQIGAVRYR-RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS---  112 (357)
T ss_dssp             ---CCCSEEEEEEEC-SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE---
T ss_pred             CcccccCCEEEEEEC-CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE---
Confidence            345799999999999 677788776     34531                23345788999999999998766544   


Q ss_pred             CCCCceEEEEEEcCCceeeec----cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           78 QSTAAAEIWLWEVGSWKAMGR----LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                         .|+.|+|||+.+++....    ..+|...|.+++|+|++++|++++.|+.|++||+++       ...+..+..|..
T Consensus       113 ---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-------~~~~~~~~~h~~  182 (357)
T 4g56_B          113 ---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-------KAVLKSYNAHSS  182 (357)
T ss_dssp             ---TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSS
T ss_pred             ---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEcCCCC
Confidence               389999999988765433    347999999999999999999999999999999987       667888889999


Q ss_pred             ceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          154 IIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       154 ~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      .|++++|+|++ .++++++.||.|++||+++++....+ ....+...+.+++|+|++.    .+|++|+.|+.|++||++
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~----~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-DFCASDTIPTSVTWHPEKD----DTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-CCTTCCSCEEEEEECTTST----TEEEEEESSSCEEEEESS
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-eeccccccccchhhhhccc----ceEEEeecccceeEEECC
Confidence            99999999987 47899999999999999988776533 3345678899999999863    789999999999999998


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.             +....   +.+|...|++++|+|++.      .+|++++.|++|+|||++
T Consensus       258 ~~-------------~~~~~---~~~~~~~v~~l~~sp~~~------~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          258 NP-------------DSAQT---SAVHSQNITGLAYSYHSS------PFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             CG-------------GGCEE---ECCCSSCEEEEEECSSSS------CCEEEEETTSCEEEECTT
T ss_pred             CC-------------cEeEE---EeccceeEEEEEEcCCCC------CEEEEEeCCCEEEEEECC
Confidence            77             44444   446899999999999873      689999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6e-37  Score=253.99  Aligned_cols=257  Identities=19%  Similarity=0.267  Sum_probs=201.4

Q ss_pred             ccceeeeecCcccccccCCCC------------------CceeeeccCCCccccccc------CCCC-----ceEEeccC
Q 037555            5 TRETVERHGNDGLDTLESVPD------------------AVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGH   55 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h   55 (298)
                      ..+.++..+|+.+..+..|..                  .|.++.|. |.+..++++      ++|+     .+..+.+|
T Consensus        86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  164 (393)
T 1erj_A           86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGH  164 (393)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence            345566667777666665542                  37888998 566667665      4564     46778899


Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ...|++++|+|++++|++++.     |+.|++||+.+++....+. +...+.+++|+| ++++|++++.|+.|++||++.
T Consensus       165 ~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          165 EQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEEcCCCCEEEEecC-----CCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            999999999999999999954     9999999999998877766 667899999999 899999999999999999886


Q ss_pred             CCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce---------eeeeecCCCCC
Q 037555          135 TGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV---------KQILALPPFNS  198 (298)
Q Consensus       135 ~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------~~~~~~~~~~~  198 (298)
                      .       ..+..+       .+|...|.+++|+|++++|++++.|+.|++||+++....         .....+.+|..
T Consensus       239 ~-------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~  311 (393)
T 1erj_A          239 G-------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD  311 (393)
T ss_dssp             C-------CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred             C-------cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC
Confidence            3       233333       568899999999999999999999999999999864321         11224557889


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      .|.+++|+|++     .+|++|+.|+.|++||..++             ..+..   +.+|...|.+++|+++. ...++
T Consensus       312 ~v~~~~~~~~~-----~~l~sgs~D~~v~iwd~~~~-------------~~~~~---l~~h~~~v~~v~~~~~~-~~~p~  369 (393)
T 1erj_A          312 FVLSVATTQND-----EYILSGSKDRGVLFWDKKSG-------------NPLLM---LQGHRNSVISVAVANGS-SLGPE  369 (393)
T ss_dssp             CEEEEEECGGG-----CEEEEEETTSEEEEEETTTC-------------CEEEE---EECCSSCEEEEEECSSC-TTCTT
T ss_pred             cEEEEEECCCC-----CEEEEEeCCCeEEEEECCCC-------------eEEEE---ECCCCCCEEEEEecCCc-CcCCC
Confidence            99999999998     79999999999999999876             44444   44799999999998732 01112


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.+|++++.||+|++|+++
T Consensus       370 ~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          370 YNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEECCCCcEEECccc
Confidence            2899999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.3e-37  Score=245.79  Aligned_cols=209  Identities=21%  Similarity=0.406  Sum_probs=188.5

Q ss_pred             CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      .....+.+|..+|++++|+|++++|++++     .|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence            35678899999999999999999999995     4899999999999988889999999999999999999999999999


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      |++||++.       ...+..+..|...|.+++|+|++++|++++.|+.|++||+++++...   .+..|..+|.+++|+
T Consensus        89 i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           89 LKIWDVSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN  158 (312)
T ss_dssp             EEEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEC
T ss_pred             EEEEECCC-------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEc
Confidence            99999987       56677888999999999999999999999999999999999887766   666788999999999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                      |++     .+|++++.|+.|++||+++.             +.+..+  ...+...+..++|+|++       .+|++++
T Consensus       159 ~~~-----~~l~~~~~d~~i~~wd~~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~-------~~l~~~~  211 (312)
T 4ery_A          159 RDG-----SLIVSSSYDGLCRIWDTASG-------------QCLKTL--IDDDNPPVSFVKFSPNG-------KYILAAT  211 (312)
T ss_dssp             TTS-----SEEEEEETTSCEEEEETTTC-------------CEEEEE--CCSSCCCEEEEEECTTS-------SEEEEEE
T ss_pred             CCC-----CEEEEEeCCCcEEEEECCCC-------------ceeeEE--eccCCCceEEEEECCCC-------CEEEEEc
Confidence            988     79999999999999999876             444443  23467789999999999       8999999


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      .|+.|++||++
T Consensus       212 ~d~~i~iwd~~  222 (312)
T 4ery_A          212 LDNTLKLWDYS  222 (312)
T ss_dssp             TTTEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence            99999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.1e-37  Score=250.38  Aligned_cols=242  Identities=14%  Similarity=0.208  Sum_probs=205.7

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      .+....+.+|.+.|.++.|. |.+..++++      ++|+     ....+..|...|.+++|+|++.+|++++     .|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~-----~d  127 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG-----LD  127 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES-----TT
T ss_pred             cEEEEEecCCCCeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee-----CC
Confidence            34567889999999999999 566677766      4664     4567778999999999999999999995     59


Q ss_pred             eEEEEEEcCCc------eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           83 AEIWLWEVGSW------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        83 ~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                      +.+++|++...      .....+.+|...|.+++|+|++..|++++.|++|++||++.       ...+..+.+|...|.
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-------~~~~~~~~~h~~~v~  200 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-------GQLLQSFHGHGADVL  200 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEE
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEcCCCCCeE
Confidence            99999998643      23445678999999999999999999999999999999987       567788889999999


Q ss_pred             EEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          157 SCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       157 ~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +++|+|  ++++|++|+.||.|++||+++++...   .+..|...|.+++|+|++     .+|++|+.|+.|++||++..
T Consensus       201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYPSG-----DAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeCCC-----CEEEEEeCCCeEEEEECCCC
Confidence            999988  46899999999999999999988766   667899999999999998     79999999999999999865


Q ss_pred             ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                   .....+. ...+...+.+++|+|++       .+|++++.|+.|++||+.
T Consensus       273 -------------~~~~~~~-~~~~~~~~~~~~~s~~g-------~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          273 -------------REVAIYS-KESIIFGASSVDFSLSG-------RLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             -------------EEEEEEC-CTTCCSCEEEEEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred             -------------cEEEEEc-CCCcccceeEEEEeCCC-------CEEEEEECCCcEEEEECC
Confidence                         3333332 22345678999999999       899999999999999973

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-38  Score=254.46  Aligned_cols=249  Identities=19%  Similarity=0.278  Sum_probs=194.6

Q ss_pred             cccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCce
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAA   83 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~   83 (298)
                      .+.+|.+.|.++.|+ |.+..++++      ++|+       .+..+.+|.++|.+++|+|  ++++|++++.     |+
T Consensus         8 ~~~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-----D~   81 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-----DR   81 (316)
T ss_dssp             ------CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-----TS
T ss_pred             ecccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-----CC
Confidence            457899999999999 667777776      5674       2467889999999999986  4899999954     99


Q ss_pred             EEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           84 EIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        84 ~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      +|++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++....    ......+..|...|.+++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBCCCE
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcceEE
Confidence            99999998763  55667889999999999997  78999999999999999986321    223445567889999999


Q ss_pred             EccC-----------------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          160 WNPF-----------------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       160 ~~~~-----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      |+|+                 +.+|++|+.|+.|++||++.......+..+.+|...|.+++|+|++. .++.+|++++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~-~~~~~las~s~  236 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG-LPTSTIASCSQ  236 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-CSCCEEEEEET
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-CCCceEEEEcC
Confidence            9997                 46899999999999999976543333446778999999999999751 11258999999


Q ss_pred             CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+.|++|++.......         .....   +..|...|.+++|+|++       .+|++++.|++|++|+..
T Consensus       237 D~~v~iw~~~~~~~~~---------~~~~~---~~~~~~~v~~v~~sp~g-------~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNT---------WSPKL---LHKFNDVVWHVSWSITA-------NILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TCEEEEEECSSTTCCC---------CBCCE---EEECSSCEEEEEECTTT-------CCEEEEESSSCEEEEEEC
T ss_pred             CCeEEEEEccCccccc---------hhhhh---hhcCCCcEEEEEEcCCC-------CEEEEEcCCCeEEEEEEC
Confidence            9999999987631100         01111   23478899999999999       899999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.5e-37  Score=246.78  Aligned_cols=211  Identities=19%  Similarity=0.313  Sum_probs=181.0

Q ss_pred             ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCC-----ceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGS-----WKAMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      ...++.+|.++|++++|+|++ ++|++++.     |++|++|++..     +.++..+.+|...|.+++|+|++++|+++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~-----D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASR-----DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecC-----CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            466789999999999999965 89999954     99999999864     34567788999999999999999999999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      +.|++|++||+.+       ...+..+.+|...|.+++|+|++.+|++++.|+.|++||++.. .+.   .+.+|...|.
T Consensus        84 s~D~~v~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~---~~~~h~~~v~  152 (319)
T 3frx_A           84 SWDKTLRLWDVAT-------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLA---TLLGHNDWVS  152 (319)
T ss_dssp             ETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEE
T ss_pred             eCCCEEEEEECCC-------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEE---EEeccCCcEE
Confidence            9999999999987       5677888999999999999999999999999999999999753 333   5667999999


Q ss_pred             EEEEeecccc-CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555          202 ALSWVGLDRQ-KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       202 ~~~~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      ++.|.|.... .++.++++++.|+.|++||++..             .....   +.+|...|.+++|+|++       .
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------------~~~~~---~~~h~~~v~~~~~sp~g-------~  209 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-------------QIEAD---FIGHNSNINTLTASPDG-------T  209 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTT-------------EEEEE---ECCCCSCEEEEEECTTS-------S
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-------------hhhee---ecCCCCcEEEEEEcCCC-------C
Confidence            9999996521 12358999999999999999765             33333   45799999999999999       8


Q ss_pred             EEEeeeCCCcEEEeEec
Q 037555          281 QLASCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~~d~~i~iw~~~  297 (298)
                      +|++++.|+.|++||+.
T Consensus       210 ~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             EEEEEETTCEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECC
Confidence            99999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.2e-36  Score=243.04  Aligned_cols=241  Identities=20%  Similarity=0.279  Sum_probs=202.5

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      .....++.+|.+.|.++.+. |.+..++++      ++|+     ....+.+|...|.+++|+|++++|++++.     |
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d   86 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----D   86 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----T
T ss_pred             ceeEEEEcccCCcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----C
Confidence            44567789999999999999 556666665      3553     46778899999999999999999999954     9


Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      +.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.       ...+..+..|..+|.+++|+|
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~  159 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-------GKCLKTLPAHSDPVSAVHFNR  159 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEEEEECT
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CEEEEEecCCCCcEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999987       556778888999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                      ++++|++++.||.|++||+++++.+..+  ...+...+..++|+|++     .+|++++.|+.|++||++++        
T Consensus       160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~--------  224 (312)
T 4ery_A          160 DGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNG-----KYILAATLDNTLKLWDYSKG--------  224 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECTTS-----SEEEEEETTTEEEEEETTTT--------
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeEE--eccCCCceEEEEECCCC-----CEEEEEcCCCeEEEEECCCC--------
Confidence            9999999999999999999988766532  23456789999999998     79999999999999999876        


Q ss_pred             CCCCcceeeeeccCCcccceE--EEEEee-cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          243 APSTANIIIRFDPFACHVAAV--NRMAWK-THEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~-~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           ..+..+.   +|...+  ....++ +++       .+|++++.||.|++||++
T Consensus       225 -----~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          225 -----KCLKTYT---GHKNEKYCIFANFSVTGG-------KWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             -----EEEEEEC---SSCCSSSCCCEEEECSSS-------CEEEECCTTSCEEEEETT
T ss_pred             -----cEEEEEE---ecCCceEEEEEEEEeCCC-------cEEEEECCCCEEEEEECC
Confidence                 4444433   344332  223344 455       799999999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6e-37  Score=267.59  Aligned_cols=261  Identities=18%  Similarity=0.233  Sum_probs=205.2

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEec-------cCCCceEEEEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLY-------GHGNELFSLCC   64 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~-------~h~~~v~~~~~   64 (298)
                      +..++.++..+++.+..+.+|.+.|.++.|+ |.+..++++      ++|+     ....+.       +|.+.|.+++|
T Consensus       169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence            4566778878888889999999999999999 567677765      4664     344553       79999999999


Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceeee-------------------------------------------cccc
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-------------------------------------------RLQS  101 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-------------------------------------------~~~~  101 (298)
                      +|++++|++++.     |++|++||+.+++.+.                                           .+.+
T Consensus       248 spdg~~l~s~s~-----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          248 SPDGTKIASASA-----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             CTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             CCCCCEEEEEeC-----CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            999999999954     8999999998765443                                           2347


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccc----------------e-----------------------
Q 037555          102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID----------------Y-----------------------  142 (298)
Q Consensus       102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~-----------------------  142 (298)
                      |...|.+++|+|++++|++++.|+.|++||+.........                .                       
T Consensus       323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~  402 (611)
T 1nr0_A          323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS  402 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence            8899999999999999999999999999998753210000                0                       


Q ss_pred             ----------e---------------------------eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555          143 ----------Q---------------------------LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       143 ----------~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  185 (298)
                                .                           .+..+ .|...+.+++|+|++++|++|+.|+.|++||+.+..
T Consensus       403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~  481 (611)
T 1nr0_A          403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  481 (611)
T ss_dssp             TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence                      0                           00011 134567899999999999999999999999998754


Q ss_pred             ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555          186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR  265 (298)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  265 (298)
                      .. .+.. ..|...|++++|+|++     .+|++++.|+.|++|++.+..            +.... ....+|...|.+
T Consensus       482 ~~-~~~~-~~h~~~v~~v~fspdg-----~~las~s~d~~v~~w~~~~~~------------~~~~~-~~~~~H~~~V~~  541 (611)
T 1nr0_A          482 VS-EVKT-IVHPAEITSVAFSNNG-----AFLVATDQSRKVIPYSVANNF------------ELAHT-NSWTFHTAKVAC  541 (611)
T ss_dssp             EE-EEEE-EECSSCEEEEEECTTS-----SEEEEEETTSCEEEEEGGGTT------------EESCC-CCCCCCSSCEEE
T ss_pred             ee-eeec-cCCCCceEEEEECCCC-----CEEEEEcCCCCEEEEEcCCCC------------ceeee-eeeeecccceeE
Confidence            32 1223 4688999999999999     799999999999999997621            11111 113359999999


Q ss_pred             EEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          266 MAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++|+|++       .+|++++.|++|++||++
T Consensus       542 v~fspdg-------~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          542 VSWSPDN-------VRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             EEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred             EEECCCC-------CEEEEEECCCcEEEEECC
Confidence            9999999       899999999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=248.56  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=206.4

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccC
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQ   78 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~   78 (298)
                      |+.+..+.+|.+.|.++.|+ |.+..++++      .+|+       .+..+.+|...|++++|+++  +++|++++.  
T Consensus         1 G~~~~~~~~h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--
T ss_pred             CCccEEecCCcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc--
Confidence            56788899999999999999 556666665      3564       34677899999999999987  999999954  


Q ss_pred             CCCceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555           79 STAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI  154 (298)
Q Consensus        79 ~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                         |+.|++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+.....     .....+..|...
T Consensus        78 ---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~~~  149 (379)
T 3jrp_A           78 ---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIG  149 (379)
T ss_dssp             ---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----CCEEEEECCTTC
T ss_pred             ---CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----eeeEEecCCCCc
Confidence               8999999999886  66777889999999999999  99999999999999999987532     234456789999


Q ss_pred             eEEEEEcc-------------CCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeec---cccCCccEE
Q 037555          155 IWSCSWNP-------------FGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGL---DRQKNHGFL  217 (298)
Q Consensus       155 v~~~~~~~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l  217 (298)
                      |.+++|+|             ++.+|++++.||.|++||+++..... ....+..|...|.+++|+|+   +     .+|
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-----~~l  224 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-----SYL  224 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-----EEE
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-----CeE
Confidence            99999999             68999999999999999998765432 33356778999999999999   6     799


Q ss_pred             EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++++.||.|++||++.....           ....+.....|...|.+++|+|++       .+|++++.||.|++|+++
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSS-------CCEEEEESSSSEEEEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCcc-----------ceeeeeccccCCCcEEEEEEcCCC-------CEEEEecCCCcEEEEeCC
Confidence            99999999999999875321           122232345588999999999999       899999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-36  Score=264.03  Aligned_cols=243  Identities=24%  Similarity=0.384  Sum_probs=207.0

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVAS   73 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~   73 (298)
                      +.++.++. ++..+..+.+|...+.++.+. |.+..++.+      .+|+    .+..+.+|...|.+++|+|++++|++
T Consensus       325 ~~i~~w~~-~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          325 KTVKLWNR-NGQHLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             SCEEEEET-TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CeEEEEeC-CCCeeEEEeCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            34555553 455677888999999999998 556666554      3453    57788899999999999999999999


Q ss_pred             EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ++     .|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..        .+.+..+..|..
T Consensus       403 ~~-----~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--------~~~~~~~~~~~~  468 (577)
T 2ymu_A          403 AS-----DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--------GQLLQTLTGHSS  468 (577)
T ss_dssp             EE-----TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--------SCEEEEEECCSS
T ss_pred             Ee-----CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--------CCEEEEEcCCCC
Confidence            95     4899999996 477788889999999999999999999999999999999964        456777889999


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|.+++|+|++++|++++.|+.|++||. +++.+.   .+.+|...|++++|+|++     .+|++++.|+.|++||.. 
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~---~~~~h~~~v~~l~~s~dg-----~~l~s~~~dg~v~lwd~~-  538 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVRGVAFSPDG-----QTIASASDDKTVKLWNRN-  538 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE---EEECCSSCEEEEEECTTS-----SCEEEEETTSEEEEECTT-
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE---EEeCCCCCEEEEEEcCCC-----CEEEEEECcCEEEEEeCC-
Confidence            9999999999999999999999999996 455555   666799999999999998     799999999999999953 


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +             +.+..   +.+|...|++++|+||+       ++|+|++.|++|++||
T Consensus       539 ~-------------~~~~~---~~~h~~~v~~~~fs~dg-------~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          539 G-------------QLLQT---LTGHSSSVWGVAFSPDG-------QTIASASSDKTVKLWN  577 (577)
T ss_dssp             S-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSCEEEEC
T ss_pred             C-------------CEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEeCCCEEEEeC
Confidence            3             34444   45799999999999999       8999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.6e-36  Score=245.06  Aligned_cols=255  Identities=19%  Similarity=0.296  Sum_probs=188.0

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      .....+|++|.+.|.+++|.|..++.++++      ++|+          +...+.+|...|.+++|+|++++|++++. 
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~-  106 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW-  106 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc-
Confidence            345567999999999999997667777765      5674          35678899999999999999999999954 


Q ss_pred             CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc---------c--------
Q 037555           78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE---------I--------  140 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~--------  140 (298)
                          |+.|++|+............+...+..+.+++++++|++++.|+.+++||+.......         .        
T Consensus       107 ----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          107 ----DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             ----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             ----cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence                9999999998766555554455555555555555555555555555555543211000         0        


Q ss_pred             ---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555          141 ---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS  199 (298)
Q Consensus       141 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  199 (298)
                                           .......+.+|...|++++|+|++++|++++.||.|++||+++.+.+.   .+. +...
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~-~~~~  258 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY---TLD-GGDI  258 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EEE-CSSC
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---eec-CCce
Confidence                                 144566677899999999999999999999999999999999988776   343 4568


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      +.+++|+|++      .+++++.|+.|++||++........       ..........+|...|++++|+|++       
T Consensus       259 v~~~~~~~~~------~~~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~dg-------  318 (340)
T 4aow_A          259 INALCFSPNR------YWLCAATGPSIKIWDLEGKIIVDEL-------KQEVISTSSKAEPPQCTSLAWSADG-------  318 (340)
T ss_dssp             EEEEEECSSS------SEEEEEETTEEEEEETTTTEEEEEE-------CCC-------CCCCCEEEEEECTTS-------
T ss_pred             EEeeecCCCC------ceeeccCCCEEEEEECCCCeEEEec-------cccceeeeccCCCCCEEEEEECCCC-------
Confidence            9999999976      4667778999999999765211100       0000011245688999999999999       


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      .+|++|+.||.|+|||++
T Consensus       319 ~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          319 QTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             SEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeCC
Confidence            899999999999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.7e-37  Score=246.39  Aligned_cols=221  Identities=19%  Similarity=0.277  Sum_probs=174.3

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ  126 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~  126 (298)
                      .+.+|.+.|++++|+|+|++||+|+.     |+.|+|||+.+++  .+..+.+|...|.+++|+|  ++++|++++.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSS-----DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEET-----TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeC-----CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            45689999999999999999999964     9999999998764  4567889999999999986  4899999999999


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      |++||++...     ......+..|...|.+++|+|+  +.+|++++.|+.|++||++..........+..|...+.+++
T Consensus        83 v~iWd~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           83 VIIWREENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             EEEECCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             EEEEECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            9999998632     2345667789999999999997  78999999999999999987643322235667889999999


Q ss_pred             Eeecccc------------CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          205 WVGLDRQ------------KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       205 ~~~~~~~------------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      |+|+...            ..+.+|++|+.|+.|++||++..             .....+..+.+|...|.+++|+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-------------~~~~~~~~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-------------GQWKEEQKLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-------------SCEEEEECCBCCSSCEEEEECCCCS
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-------------CccceeeecccCCCceEEEEecCCC
Confidence            9997310            01258999999999999999643             2122233467899999999999984


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEec
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .   .++.+|++++.|++|++|+++
T Consensus       225 ~---~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          225 G---LPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             S---CSCCEEEEEETTCEEEEEECS
T ss_pred             C---CCCceEEEEcCCCeEEEEEcc
Confidence            1   011689999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-35  Score=244.59  Aligned_cols=246  Identities=18%  Similarity=0.244  Sum_probs=192.5

Q ss_pred             CCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCC------------------CceEEEEEcCCCCEEEe
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHG------------------NELFSLCCDHQGKLVAS   73 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~------------------~~v~~~~~s~~~~~l~~   73 (298)
                      +|...|.++.|+ |+++.++++     .+|.     .+..+.+|.                  ..|++++|+|++++|++
T Consensus        62 ~h~~~V~~v~fs-pdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEEC-CCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            699999999999 566777665     2442     244454443                  24999999999999999


Q ss_pred             EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ++     .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.       ......+. +..
T Consensus       141 ~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~  207 (393)
T 1erj_A          141 GA-----EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-------GQCSLTLS-IED  207 (393)
T ss_dssp             EE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEEEEEEE-CSS
T ss_pred             Ec-----CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-------CeeEEEEE-cCC
Confidence            95     489999999999999999999999999999999999999999999999999986       34444443 567


Q ss_pred             ceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555          154 IIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL  228 (298)
Q Consensus       154 ~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v  228 (298)
                      .+.+++|+| ++++|++++.|+.|++||++++.....+.    ...+|...|.+++|+|++     .+|++|+.|+.|++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-----~~l~s~s~d~~v~~  282 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-----QSVVSGSLDRSVKL  282 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-----SEEEEEETTSEEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-----CEEEEEeCCCEEEE
Confidence            899999999 89999999999999999999887665331    124688999999999998     79999999999999


Q ss_pred             EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          229 WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ||++......... ......+...   +.+|...|.+++|+|++       .+|++++.|+.|++||++
T Consensus       283 wd~~~~~~~~~~~-~~~~~~~~~~---~~~h~~~v~~~~~~~~~-------~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          283 WNLQNANNKSDSK-TPNSGTCEVT---YIGHKDFVLSVATTQND-------EYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EEC----------------CEEEE---EECCSSCEEEEEECGGG-------CEEEEEETTSEEEEEETT
T ss_pred             EECCCCCCccccc-CCCCCcceEE---EecccCcEEEEEECCCC-------CEEEEEeCCCeEEEEECC
Confidence            9998653221100 0000122222   44799999999999999       899999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8e-37  Score=252.13  Aligned_cols=248  Identities=15%  Similarity=0.210  Sum_probs=202.8

Q ss_pred             eeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555            9 VERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKA   77 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~   77 (298)
                      ++.....+..++.+|.+.|.++.|. |.+..++++      ++|+     ....+.+|...|.+++|+|++++|++++  
T Consensus        51 ~~~~~~~~~~~l~gH~~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~--  127 (380)
T 3iz6_a           51 FNPTDLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG--  127 (380)
T ss_dssp             CCCCCCEEEEEECCCSSCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC--
T ss_pred             cccceeEEeecccccccEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee--
Confidence            3344556678899999999999999 566677765      5674     4677889999999999999999999995  


Q ss_pred             CCCCceEEEEEEcCCce-------eeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe-
Q 037555           78 QSTAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ-  148 (298)
Q Consensus        78 ~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-  148 (298)
                         .|+.|++|++.+..       ....+.+|...|.++.|.|+ +..|++++.|++|++||+.++       ..+..+ 
T Consensus       128 ---~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-------~~~~~~~  197 (380)
T 3iz6_a          128 ---LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-------QRISIFG  197 (380)
T ss_dssp             ---SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-------CEEEEEC
T ss_pred             ---CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-------cEEEEee
Confidence               59999999986532       33457889999999999996 457999999999999999873       334433 


Q ss_pred             ----eccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          149 ----EAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       149 ----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                          .+|...|.+++|++ ++++|++|+.|+.|++||++.. ....   .+.+|...|.+++|+|++     .+|++|+.
T Consensus       198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~  269 (380)
T 3iz6_a          198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR---TYHGHEGDINSVKFFPDG-----QRFGTGSD  269 (380)
T ss_dssp             CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE---EECCCSSCCCEEEECTTS-----SEEEEECS
T ss_pred             cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE---EECCcCCCeEEEEEecCC-----CeEEEEcC
Confidence                56889999999987 7899999999999999999843 4444   667899999999999998     79999999


Q ss_pred             CCcEEEEEeeecccccccCCCCCCcceeeeecc----CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+.|++||++++             ..+..+..    ...+...|++++|+|++       .+|++++.||.|++||+.
T Consensus       270 D~~i~lwd~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          270 DGTCRLFDMRTG-------------HQLQVYNREPDRNDNELPIVTSVAFSISG-------RLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SSCEEEEETTTT-------------EEEEEECCCCSSSCCSSCSCSEEEECSSS-------SEEEEECTTSCEEEEETT
T ss_pred             CCeEEEEECCCC-------------cEEEEecccccccccccCceEEEEECCCC-------CEEEEEECCCCEEEEECC
Confidence            999999999876             33333321    11233458999999999       899999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-35  Score=239.87  Aligned_cols=212  Identities=15%  Similarity=0.312  Sum_probs=178.7

Q ss_pred             ceEEeccCCCceEEEEE-----cC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCC
Q 037555           48 ESHKLYGHGNELFSLCC-----DH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHD  114 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~-----s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~  114 (298)
                      ....+.+|.+.|++++|     ++ ++++|++|+.     |++|++||+.+.       .+...+.+|...|.+++|+|+
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~-----D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSR-----DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEET-----TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcC-----CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            46778999999999999     76 8999999964     999999998643       455678899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555          115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      +.++++++.|++|++||+++       ...+..+.+|...|.+++|+|++++|++++.|+.|++||+... .........
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~  159 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRT-------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKE  159 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTS-------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTT
T ss_pred             CCEEEEEcCCCcEEEEECCC-------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeeccc
Confidence            99999999999999999987       5567788899999999999999999999999999999999843 223222334


Q ss_pred             CCCCceEEEEEeeccc-----cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          195 PFNSSVTALSWVGLDR-----QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                      .|...|.+++|+|.+.     .+.+.++++++.|+.|++||.. .             .....   +.+|...|.+++|+
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-------------~~~~~---~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-------------QIRYT---FKAHESNVNHLSIS  222 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-------------EEEEE---EECCSSCEEEEEEC
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-------------ceeEE---EcCccccceEEEEC
Confidence            6888999999999762     1122589999999999999943 1             23333   44699999999999


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      |++       .+|++++.|+.|++||+
T Consensus       223 ~~g-------~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          223 PNG-------KYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             TTS-------SEEEEEETTCEEEEEES
T ss_pred             CCC-------CEEEEEcCCCeEEEEEC
Confidence            999       89999999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5e-35  Score=237.79  Aligned_cols=235  Identities=17%  Similarity=0.276  Sum_probs=183.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcC--CCCEEEEEeC
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSH--DDNLLLSVSR  123 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  123 (298)
                      ..+.+|.+.|++++|+|++++|++++     .|+.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~   79 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY   79 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ccCcccccceeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence            45679999999999999999999995     4899999999876    45666788999999999999  6999999999


Q ss_pred             CCeEEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCccee-----------
Q 037555          124 DRQFSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVK-----------  188 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~-----------  188 (298)
                      ||.|++||+.......  ........+..|...|.+++|+|+  +++|++++.||.|++||+++.+...           
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            9999999998753211  112567778889999999999999  9999999999999999987654221           


Q ss_pred             ----------------------------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          189 ----------------------------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       189 ----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                                                                    .+..+.+|...|++++|+|++. ....+|++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~-~~~~~l~s~~~  238 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG-RWYQLIATGCK  238 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS-CSSEEEEEEET
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC-CcceEEEEEcC
Confidence                                                          1334567888999999999861 00148999999


Q ss_pred             CCcEEEEEeeecccccccCCCCC------------------------------CcceeeeeccCCcccceEEEEEeecCC
Q 037555          223 SGVIELWSISVNRTNDVSTPAPS------------------------------TANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       223 dg~i~vwd~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      ||.|++||++.............                              .......+..+.+|...|++++|+|++
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            99999999987532211100000                              001123333456799999999999999


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEec
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             .+|++++.||.|++|+++
T Consensus       319 -------~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          319 -------TILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             -------CCEEEEETTSCEEEEEEC
T ss_pred             -------CEEEEecCCCcEEEEecC
Confidence                   899999999999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-35  Score=263.41  Aligned_cols=239  Identities=20%  Similarity=0.372  Sum_probs=200.0

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQST   80 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~   80 (298)
                      ...+.+|.+.|.++.+.|...+.++++      ++|+          ....+.+|...|.+++|+|++++|++|+.    
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~----  450 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW----  450 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC----
Confidence            346889999999999997766777765      4674          24678899999999999999999999964    


Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                       |+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||......    .........|...|.+++|
T Consensus       451 -Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          451 -DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSSCEEEEEE
T ss_pred             -CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCCcEEEEEE
Confidence             99999999999999999999999999999999999999999999999999754210    1111122468889999999


Q ss_pred             ccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555          161 NPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND  238 (298)
Q Consensus       161 ~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  238 (298)
                      +|++  ..|++++.|+.|++||+++.+...   .+.+|...|++++|+|++     .+|++|+.||.|++||++++    
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~---~~~~h~~~v~~v~~spdg-----~~l~sg~~Dg~i~iwd~~~~----  593 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRS---TLAGHTGYVSTVAVSPDG-----SLCASGGKDGVVLLWDLAEG----  593 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSBCEEEETTTT----
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECCCC----
Confidence            9976  689999999999999999887766   677899999999999998     79999999999999999876    


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                               +.+..+.    +...|.+++|+|++       .+|++++ |+.|++||++
T Consensus       594 ---------~~~~~~~----~~~~v~~~~~sp~~-------~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          594 ---------KKLYSLE----ANSVIHALCFSPNR-------YWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             ---------EEEECCB----CSSCEEEEEECSSS-------SEEEEEE-TTEEEEEETT
T ss_pred             ---------ceEEEec----CCCcEEEEEEcCCC-------cEEEEEc-CCCEEEEECC
Confidence                     4444332    45679999999998       6766655 6679999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.5e-35  Score=254.32  Aligned_cols=245  Identities=23%  Similarity=0.397  Sum_probs=208.2

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVAS   73 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~   73 (298)
                      +.++.++ .+++.+..+.+|...|..+.+. |.+..+++.      ++|+    .+..+.+|...|.+++|+|++++|++
T Consensus       284 ~~i~~w~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  361 (577)
T 2ymu_A          284 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIAS  361 (577)
T ss_dssp             SCEEEEE-TTSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEe-CCCcEEEEEecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            3445555 3567788889999999999998 555565554      4563    46778899999999999999999999


Q ss_pred             EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555           74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR  153 (298)
Q Consensus        74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ++     .|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..        .+.+..+..|..
T Consensus       362 ~~-----~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--------~~~~~~~~~~~~  427 (577)
T 2ymu_A          362 AS-----DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSS  427 (577)
T ss_dssp             EE-----TTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--------CCEEEEEECCSS
T ss_pred             Ee-----CCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--------CCEEEEecCCCC
Confidence            95     4899999996 477788889999999999999999999999999999999954        456777889999


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|++++|+|++++|++++.|+.|++||.. .+.+.   .+.+|...|++++|+|++     .+|++++.|+.|++||.. 
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~---~~~~~~~~v~~~~~spd~-----~~las~~~d~~i~iw~~~-  497 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDG-----QTIASASDDKTVKLWNRN-  497 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEE---EEECCSSCEEEEEECTTS-----CEEEEEETTSEEEEEETT-
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEE---EEcCCCCCEEEEEEcCCC-----CEEEEEeCCCEEEEEcCC-
Confidence            99999999999999999999999999975 44444   566789999999999998     799999999999999953 


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +             +.+..   +.+|...|++++|+|++       .+|++++.|+.|++||+.
T Consensus       498 ~-------------~~~~~---~~~h~~~v~~l~~s~dg-------~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          498 G-------------QLLQT---LTGHSSSVRGVAFSPDG-------QTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             S-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSEEEEECTT
T ss_pred             C-------------CEEEE---EeCCCCCEEEEEEcCCC-------CEEEEEECcCEEEEEeCC
Confidence            3             44444   44799999999999999       899999999999999853

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-35  Score=239.88  Aligned_cols=220  Identities=20%  Similarity=0.310  Sum_probs=183.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEcCC--CCEEEEEeC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSR  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  123 (298)
                      .+..+.+|.+.|++++|+|++++|++++.     |+.|++|++.  +++.+..+.+|...|.+++|+++  +++|++++.
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEET-----TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEEC-----CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            35677899999999999999999999954     8999999997  66777888899999999999987  899999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      ||.|++||+....     ......+..|...|.+++|+|+  +.+|++++.|+.|++||++........ .+..|...|.
T Consensus        78 dg~v~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~  151 (379)
T 3jrp_A           78 DGKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVN  151 (379)
T ss_dssp             TSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEE
T ss_pred             CCEEEEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceE
Confidence            9999999998732     2366777789999999999999  999999999999999999987544332 4456889999


Q ss_pred             EEEEeeccc--------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC--
Q 037555          202 ALSWVGLDR--------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH--  271 (298)
Q Consensus       202 ~~~~~~~~~--------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  271 (298)
                      +++|+|...        .+++.++++++.|+.|++||++....            .......+.+|...|.+++|+|+  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------TYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT------------EEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc------------ceeeEEEEecccCcEeEEEECCCCC
Confidence            999999410        00117999999999999999987531            11222235579999999999999  


Q ss_pred             -CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          272 -EKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       272 -~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       +       .+|++++.||.|++||++
T Consensus       220 ~~-------~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          220 LR-------SYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             SS-------EEEEEEETTSCEEEEEES
T ss_pred             CC-------CeEEEEeCCCEEEEEeCC
Confidence             7       899999999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.9e-35  Score=241.35  Aligned_cols=206  Identities=10%  Similarity=0.091  Sum_probs=170.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      +...+.+++|+|||++|++++.   +.|++|+|||+.+++.+..+. |...|.+++|+|||+++++++.++ +++|+...
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~  206 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT  206 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTT
T ss_pred             cccCEEEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEecc
Confidence            4456899999999999987764   568999999999999888876 778899999999999999998655 55666554


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ..     .........|...|.+++|+|++.++++++.|+    .+++||+....... ....+..|...|++++|+|++
T Consensus       207 ~~-----~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          207 GS-----CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             CC-----EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             Cc-----ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            32     222334456888999999999999999999877    68889987654322 223556788999999999999


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                           .+|++|+.|+.|+|||++++             +++..+  +.+|..+|++|+|+||+       .+|+|++.|+
T Consensus       282 -----~~lasgs~D~~V~iwd~~~~-------------~~~~~~--~~gH~~~V~~v~fSpdg-------~~laS~S~D~  334 (365)
T 4h5i_A          282 -----ELAVLASNDNSIALVKLKDL-------------SMSKIF--KQAHSFAITEVTISPDS-------TYVASVSAAN  334 (365)
T ss_dssp             -----CEEEEEETTSCEEEEETTTT-------------EEEEEE--TTSSSSCEEEEEECTTS-------CEEEEEETTS
T ss_pred             -----CceEEEcCCCEEEEEECCCC-------------cEEEEe--cCcccCCEEEEEECCCC-------CEEEEEeCCC
Confidence                 79999999999999999876             555554  45899999999999999       8999999999


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      +|||||+.
T Consensus       335 tvrvw~ip  342 (365)
T 4h5i_A          335 TIHIIKLP  342 (365)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEcC
Confidence            99999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7e-34  Score=230.33  Aligned_cols=249  Identities=14%  Similarity=0.222  Sum_probs=208.2

Q ss_pred             ccccceeeeecCccccccc-----CCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEE
Q 037555            3 AATRETVERHGNDGLDTLE-----SVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCC   64 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~   64 (298)
                      ++.++.++..+++....+.     +|...|..+.+.| .+..++.+      .+|+       ....+.+|...|.+++|
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence            3456667776666444443     7889999999995 55555544      3442       35667789999999999


Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceee
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL  144 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  144 (298)
                      +|++++|++++     .|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||++.       ...
T Consensus       150 ~~~~~~l~~~~-----~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~~  217 (337)
T 1gxr_A          150 SPDSKVCFSCC-----SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-------GRQ  217 (337)
T ss_dssp             CTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEE
T ss_pred             CCCCCEEEEEe-----CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC-------Cce
Confidence            99999999995     489999999999999999999999999999999999999999999999999987       344


Q ss_pred             eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555          145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG  224 (298)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg  224 (298)
                      ...+ .+...+.+++|+|++++|++++.|+.|++||+++.+..    .+..|...|.+++|+|++     .+|++++.||
T Consensus       218 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg  287 (337)
T 1gxr_A          218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCG-----KWFVSTGKDN  287 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTS-----SEEEEEETTS
T ss_pred             Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCCccceeEEEECCCC-----CEEEEecCCC
Confidence            4444 47788999999999999999999999999999987643    455688999999999998     7999999999


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                      .|++||+.++             ......    .|...|.+++|+|++       .+|++++.||.|++|++.+
T Consensus       288 ~i~~~~~~~~-------------~~~~~~----~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          288 LLNAWRTPYG-------------ASIFQS----KESSSVLSCDISVDD-------KYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             EEEEEETTTC-------------CEEEEE----ECSSCEEEEEECTTS-------CEEEEEETTSCEEEEEEEC
T ss_pred             cEEEEECCCC-------------eEEEEe----cCCCcEEEEEECCCC-------CEEEEecCCCeEEEEEEeC
Confidence            9999999876             333322    378899999999999       8999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.2e-36  Score=250.76  Aligned_cols=213  Identities=16%  Similarity=0.174  Sum_probs=173.8

Q ss_pred             CceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEe
Q 037555           47 PESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVS  122 (298)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~  122 (298)
                      .......+|...|+||+|+| ++.+||+|+     .||.|+|||+.+++.  ...+.+|...|++++|+| ++++|++++
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            34566778999999999999 567899995     499999999987654  344668999999999998 788999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      .||+|++||++...     .........+...+.+++|+|++.+|++|+.||.|++||++.. .+.   .+.+|...|.+
T Consensus       185 ~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~---~~~~h~~~v~~  255 (435)
T 4e54_B          185 MEGTTRLQDFKGNI-----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW---NLRMHKKKVTH  255 (435)
T ss_dssp             SSSCEEEEETTSCE-----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC---CSBCCSSCEEE
T ss_pred             CCCEEEEeeccCCc-----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE---EEecccceEEe
Confidence            99999999987521     1222222234456789999999999999999999999999753 334   67789999999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      ++|+|++.    .++++|+.|+.|++||+++...             ...+....+|...|++++|+|++       .+|
T Consensus       256 v~~~p~~~----~~~~s~s~d~~v~iwd~~~~~~-------------~~~~~~~~~h~~~v~~~~~spdg-------~~l  311 (435)
T 4e54_B          256 VALNPCCD----WFLATASVDQTVKIWDLRQVRG-------------KASFLYSLPHRHPVNAACFSPDG-------ARL  311 (435)
T ss_dssp             EEECTTCS----SEEEEEETTSBCCEEETTTCCS-------------SSCCSBCCBCSSCEEECCBCTTS-------SEE
T ss_pred             eeecCCCc----eEEEEecCcceeeEEecccccc-------------cceEEEeeeccccccceeECCCC-------Cee
Confidence            99999874    6899999999999999987632             22222245799999999999999       899


Q ss_pred             EeeeCCCcEEEeEec
Q 037555          283 ASCGADNTVRVFQVN  297 (298)
Q Consensus       283 ~s~~~d~~i~iw~~~  297 (298)
                      ++++.|+.|++||++
T Consensus       312 ~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          312 LTTDQKSEIRVYSAS  326 (435)
T ss_dssp             EEEESSSCEEEEESS
T ss_pred             EEEcCCCEEEEEECC
Confidence            999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.3e-36  Score=244.35  Aligned_cols=263  Identities=14%  Similarity=0.208  Sum_probs=206.8

Q ss_pred             cccceeeeecCcccccccC-----CCCCceeeeccCCC---ccccccc------CCCC-----ceEEeccCCCceEEEEE
Q 037555            4 ATRETVERHGNDGLDTLES-----VPDAVPAVFTEPPI---EDQLAWH------TLWP-----ESHKLYGHGNELFSLCC   64 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~   64 (298)
                      +.++.++..+++.+..+..     |...|.++.+.|..   +..++++      .+|+     .+..+.+|...|.+++|
T Consensus        44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  123 (366)
T 3k26_A           44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF  123 (366)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred             CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence            3567778888887777764     45678999998553   3455554      3553     46778899999999999


Q ss_pred             cC-CCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555           65 DH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI  140 (298)
Q Consensus        65 s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (298)
                      +| ++.+|++++     .|+.|++||+.+++.+..+   ..|...|.+++|+|++++|++++.||.|++||++.......
T Consensus       124 ~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  198 (366)
T 3k26_A          124 HPRDPNLLLSVS-----KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA  198 (366)
T ss_dssp             CSSCTTEEEEEE-----TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHH
T ss_pred             CCCCCCEEEEEe-----CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccc
Confidence            99 899999995     4899999999999888877   68999999999999999999999999999999986321000


Q ss_pred             ---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-----------ee
Q 037555          141 ---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-----------VK  188 (298)
Q Consensus       141 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----------~~  188 (298)
                                           ..........|...|.+++|+  +++|++++.|+.|++||+++...           ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  276 (366)
T 3k26_A          199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT  276 (366)
T ss_dssp             HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred             cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence                                 001122333488999999998  77999999999999999987654           12


Q ss_pred             eeeecCCCCCceEEEEEeec--cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc--cceEE
Q 037555          189 QILALPPFNSSVTALSWVGL--DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH--VAAVN  264 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~  264 (298)
                      .+..+..|...|.+++|+|+  +     .+|++|+.||.|++||+.+++...         .....   +..|  ...|+
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~---~~~~~~~~~v~  339 (366)
T 3k26_A          277 ILGRFDYSQCDIWYMRFSMDFWQ-----KMLALGNQVGKLYVWDLEVEDPHK---------AKCTT---LTHHKCGAAIR  339 (366)
T ss_dssp             EEEEEECSSCCSSCCCCEECTTS-----SEEEEECTTSCEEEEECCSSSGGG---------CEEEE---ECCTTCCSCEE
T ss_pred             eeccccccCCcEEEEEEcCCCCC-----cEEEEEecCCcEEEEECCCCCCcc---------ccceE---EcccccCCceE
Confidence            23355678888999999998  7     799999999999999998763221         12223   3345  79999


Q ss_pred             EEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +++|+|++       .+|++++.||.|++||+.
T Consensus       340 ~~~~s~~~-------~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          340 QTSFSRDS-------SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTS-------SEEEEEETTSEEEEEEC-
T ss_pred             EEEeCCCC-------CeEEEEeCCCEEEEEEec
Confidence            99999999       899999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=253.34  Aligned_cols=270  Identities=9%  Similarity=0.029  Sum_probs=202.0

Q ss_pred             ccccceeeeecCccc----ccccCCCCCceeeeccCC-----Cccccccc------CCCCc----------------eEE
Q 037555            3 AATRETVERHGNDGL----DTLESVPDAVPAVFTEPP-----IEDQLAWH------TLWPE----------------SHK   51 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~-----~~~~~~~~------~~~~~----------------~~~   51 (298)
                      ++.++.++..+++..    ..+.+|.+.|..+.|.|.     .+..++++      ++|+.                ...
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~  261 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT  261 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence            456778888887753    346788899999999964     23456654      45642                236


Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEEEE--EEcCCC-CEEEEEeCCCeE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVTQI--RFSHDD-NLLLSVSRDRQF  127 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i  127 (298)
                      +.+|...|++++|++++ .|++|+     .||+|++||+++++ +...+.+|...|.++  .|+|++ ++|++++.|++|
T Consensus       262 l~~h~~~v~sv~~s~~~-~lasgs-----~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          262 LSLADSLITTFDFLSPT-TVVCGF-----KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             ECCTTTCEEEEEESSSS-EEEEEE-----TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             EEcCCCCEEEEEecCCC-eEEEEe-----CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            78899999999999864 799995     49999999998764 445578899999999  578887 899999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      ++||++.       ......+.+|..  .|.+++|+|+++.|++++.|++|++||+++...+.   .+.+|...|++++|
T Consensus       336 klWD~~~-------~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~---~l~gH~~~V~sva~  405 (524)
T 2j04_B          336 YIFNPKD-------IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH---PLVSRETTITAIGV  405 (524)
T ss_dssp             EEECGGG-------HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE---EEEECSSCEEEEEC
T ss_pred             EEEECCC-------CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce---eeecCCCceEEEEe
Confidence            9999986       334444555543  57899999999999999999999999999987766   45579999999999


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeeeccccc--------------ccCCCCCCc-------------c-eeeeeccCC
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTND--------------VSTPAPSTA-------------N-IIIRFDPFA  257 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~--------------~~~~~~~~~-------------~-~~~~~~~~~  257 (298)
                      +|++     .+|++|+.|+.|++||+.......              .....+...             . .-..+..+.
T Consensus       406 Sp~g-----~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~  480 (524)
T 2j04_B          406 SRLH-----PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID  480 (524)
T ss_dssp             CSSC-----CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------------
T ss_pred             CCCC-----CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec
Confidence            9998     799999999999999975431110              000011000             0 011123356


Q ss_pred             cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|...|.+++|+|++.    .+.+|++|+.||.|+||+++
T Consensus       481 gh~~~V~~Vafsp~~~----~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          481 AHGINITCTKWNETSA----GGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -CCCSCCCEEECCSTT----TTTEEEEECTTSEEEEEECS
T ss_pred             CCCceEEEEECCCCCC----ccHHHHhhccCceEEEEEcc
Confidence            7999999999999961    12599999999999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-35  Score=240.80  Aligned_cols=279  Identities=14%  Similarity=0.133  Sum_probs=203.2

Q ss_pred             cccccceeeeecC--cccccccCCCCCceeeeccCCCccccccc------CCCC--------ceEEeccCCCceEEEEEc
Q 037555            2 YAATRETVERHGN--DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------ESHKLYGHGNELFSLCCD   65 (298)
Q Consensus         2 ~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------~~~~~~~h~~~v~~~~~s   65 (298)
                      .++.++.++..++  +.+..+.+|...|.++.+. |.+..++++      .+|+        ....+.+|...|.+++|+
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS  109 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence            3567888999988  7899999999999999999 456666654      4554        356677899999999999


Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCce---eeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc--
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWK---AMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE--  139 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--  139 (298)
                      |++++|++++     .|+.|++||+++++   ....+.. |...|.+++|+|++++|++++.|+.|++||+.......  
T Consensus       110 ~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          110 PNEDKFAVGS-----GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             TTSSCCEEEE-----SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             CCCCEEEEEe-----cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence            9999999995     48999999999876   3566776 99999999999999999999999999999996322110  


Q ss_pred             ---------cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555          140 ---------IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       140 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~  209 (298)
                               .....+..+ .|...|.+++|+|++++|++++.||.|++||+++.+... .+..+..|...|.+++|+|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred             cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence                     013455555 899999999999999999999999999999999887611 122566788999999999998


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccC-C-CCC-C--------------ccee------eee-------------
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVST-P-APS-T--------------ANII------IRF-------------  253 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~-~~~-~--------------~~~~------~~~-------------  253 (298)
                           .+|++|+.++.+ +|+........... . ... .              ...+      ..+             
T Consensus       264 -----~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  337 (377)
T 3dwl_C          264 -----AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSIS  337 (377)
T ss_dssp             -----EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------C
T ss_pred             -----CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence                 788888766655 77665322110000 0 000 0              0000      001             


Q ss_pred             ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .....|...|+++++.+...   .....|+|||.||.|++||+
T Consensus       338 ~~~~~H~~~i~~~~~~~~~~---~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          338 SLPTVHQNMIATLRPYAGTP---GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCSSSCSSCEEEEEEEEEET---TEEEEEEEEETTSEEEEECC
T ss_pred             ccCccccceeEEEeccCCCC---CceEEEEeecCCCcEEEecC
Confidence            11234999999999876541   00127999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.7e-35  Score=244.05  Aligned_cols=253  Identities=16%  Similarity=0.196  Sum_probs=200.0

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ++.++.++..+++....+..| ..+....+. +.+..++++      .+|+     ....+.+|...|++++|+|++++|
T Consensus        77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  154 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAK-LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL  154 (420)
T ss_dssp             TTEEEEEECCSEETTTTSCSC-CEEEEEEEC-SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEecccceeeEEecC-CceEEEEEe-cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence            456777888888888888877 333443444 666666665      3554     345567999999999999999999


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec-
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-  150 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  150 (298)
                      ++++.     |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.       ...+..+.. 
T Consensus       155 ~s~s~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~  222 (420)
T 3vl1_A          155 ISSSQ-----DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-------GTTIHTFNRK  222 (420)
T ss_dssp             EEEET-----TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-------TEEEEEECBT
T ss_pred             EEEeC-----CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-------CceeEEeecC
Confidence            99954     89999999999999999999999999999999999999999999999999987       344444443 


Q ss_pred             --cC---------------------CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          151 --HK---------------------RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       151 --~~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                        +.                     ..+.+++|+|++++|++++.||.|++||+++.+....+  ...|...|.+++|+|
T Consensus       223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~  300 (420)
T 3vl1_A          223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKFTCSCNSLTVDG  300 (420)
T ss_dssp             TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTTSSCEEEEEECS
T ss_pred             CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccccCCCceeEEEeC
Confidence              33                     34445556788999999999999999999988766533  235788999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ++.    .+|++|+.||.|++||+++...            .+..+.  ..|...|.++.| +++       .+|++++.
T Consensus       301 ~~~----~~l~~g~~dg~i~vwd~~~~~~------------~~~~~~--~~~~~~v~~~~~-~~~-------~~l~s~~~  354 (420)
T 3vl1_A          301 NNA----NYIYAGYENGMLAQWDLRSPEC------------PVGEFL--INEGTPINNVYF-AAG-------ALFVSSGF  354 (420)
T ss_dssp             SCT----TEEEEEETTSEEEEEETTCTTS------------CSEEEE--ESTTSCEEEEEE-ETT-------EEEEEETT
T ss_pred             CCC----CEEEEEeCCCeEEEEEcCCCcC------------chhhhh--ccCCCCceEEEe-CCC-------CEEEEecC
Confidence            982    3999999999999999987632            122322  126778888855 566       79999999


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      |+.|++|++.
T Consensus       355 d~~v~iw~~~  364 (420)
T 3vl1_A          355 DTSIKLDIIS  364 (420)
T ss_dssp             TEEEEEEEEC
T ss_pred             CccEEEEecc
Confidence            9999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-34  Score=240.14  Aligned_cols=261  Identities=13%  Similarity=0.115  Sum_probs=210.7

Q ss_pred             ccccceeeeecCc------ccccccCCCCCceeeeccCC---Cc---cccccc------CCCC-----c-----eEEecc
Q 037555            3 AATRETVERHGND------GLDTLESVPDAVPAVFTEPP---IE---DQLAWH------TLWP-----E-----SHKLYG   54 (298)
Q Consensus         3 ~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~---~~---~~~~~~------~~~~-----~-----~~~~~~   54 (298)
                      ++.++.++..+++      .+..+.+|...|.++.+.|.   .+   ..++++      .+|+     .     ...+.+
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  114 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL  114 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC
T ss_pred             CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc
Confidence            4667888888888      78899999999999999944   15   566554      3553     2     677888


Q ss_pred             C-----CCceEEEEEc----CCCCE-EEeEeccCCCCceEEEEEEcCC------ceeee-----cc-------ccccccE
Q 037555           55 H-----GNELFSLCCD----HQGKL-VASSCKAQSTAAAEIWLWEVGS------WKAMG-----RL-------QSHSLTV  106 (298)
Q Consensus        55 h-----~~~v~~~~~s----~~~~~-l~~~~~~~~~~d~~i~vw~~~~------~~~~~-----~~-------~~~~~~v  106 (298)
                      |     ...|.+++|+    |++++ |++++     .|+.|++||+.+      ++.+.     .+       ..|...|
T Consensus       115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  189 (397)
T 1sq9_A          115 LDSDMKKHSFWALKWGASNDRLLSHRLVATD-----VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA  189 (397)
T ss_dssp             SCTTGGGSCEEEEEEECCC----CEEEEEEE-----TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred             cccccCCCcEEEEEEeeccCCCCceEEEEEe-----CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence            8     5899999999    99999 99995     489999999998      66665     66       3488999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec---c---CCceEEEEEccCCCEEEEeeCC---CeEE
Q 037555          107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA---H---KRIIWSCSWNPFGHEFATGSRD---KTVK  177 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~  177 (298)
                      .+++|+|++ ++++++.||.|++||++.       ...+..+..   |   ...|.+++|+|++++|++++.|   +.|+
T Consensus       190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          190 TSVDISERG-LIATGFNNGTVQISELST-------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTT-------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             eEEEECCCc-eEEEEeCCCcEEEEECCC-------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence            999999999 999999999999999987       566777777   8   9999999999999999999999   9999


Q ss_pred             EEEccCCcceeeeeecCC-------------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555          178 IWAVENKSSVKQILALPP-------------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP  244 (298)
Q Consensus       178 ~wd~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  244 (298)
                      +||+++.+.+.   .+..             |...|.+++|+|++     .+|++++.|+.|++||+++.          
T Consensus       262 i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~----------  323 (397)
T 1sq9_A          262 LYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-----ETLCSAGWDGKLRFWDVKTK----------  323 (397)
T ss_dssp             EEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTT----------
T ss_pred             EEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCC-----CEEEEEeCCCeEEEEEcCCC----------
Confidence            99999887766   5555             88999999999998     79999999999999999876          


Q ss_pred             CCcceeeeeccC---Ccc---------------cceEEEEEeecCCCC---CCCcceEEEeeeCCCcEEEeEec
Q 037555          245 STANIIIRFDPF---ACH---------------VAAVNRMAWKTHEKP---KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       245 ~~~~~~~~~~~~---~~~---------------~~~v~~~~~~~~~~~---~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         +.+..+...   .+|               ...|.+++|+|++..   ...++.+|++++.||.|++|+++
T Consensus       324 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          324 ---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             ---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ---ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence               444443300   034               899999999999610   00011499999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-34  Score=235.30  Aligned_cols=277  Identities=14%  Similarity=0.116  Sum_probs=209.6

Q ss_pred             ccccceeeeecCc--ccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCC
Q 037555            3 AATRETVERHGND--GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQ   67 (298)
Q Consensus         3 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~   67 (298)
                      ++.++.++..+++  .+..+.+|...|..+.+.| .+..++++      .+|+.       ...+.+|...|.+++|+|+
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            4667888888887  8999999999999999995 56666654      35542       3334679999999999999


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-----
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG-----  138 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----  138 (298)
                      +++|++++     .|+.|++||+..++.    ......|...|.+++|+|++++|++++.||.|++||+......     
T Consensus       108 ~~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          108 EKKFAVGS-----GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             SSEEEEEE-----TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             CCEEEEEe-----CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence            99999995     489999999987652    2333568999999999999999999999999999997522110     


Q ss_pred             ------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          139 ------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       139 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                            ......+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+.   .+..+...|.+++|+|++   
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~---  256 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITES---  256 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETT---
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE---EEccCCCCeEEEEEecCC---
Confidence                  00145667777899999999999999999999999999999999988776   555688899999999998   


Q ss_pred             CccEEEEeecCCcEEEEEeee--cccccccCCCC-------------------CCccee----eeeccCCcccceEEEEE
Q 037555          213 NHGFLAVGMESGVIELWSISV--NRTNDVSTPAP-------------------STANII----IRFDPFACHVAAVNRMA  267 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~-------------------~~~~~~----~~~~~~~~~~~~v~~~~  267 (298)
                        .++++| .|+.|++|+++.  +..........                   ......    .......+|...|++++
T Consensus       257 --~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  333 (372)
T 1k8k_C          257 --SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS  333 (372)
T ss_dssp             --EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred             --CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeE
Confidence              677777 899999999987  31000000000                   000000    00111248999999999


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |.+...   .++.+|++++.||.|++|+++
T Consensus       334 ~~~~~g---~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          334 VLSGGK---AKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             EEESTT---TSCSEEEEEETTSEEEEEEHH
T ss_pred             EecCCC---cceeeEEEecCCCceEEEEec
Confidence            875430   011599999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=237.15  Aligned_cols=271  Identities=11%  Similarity=0.171  Sum_probs=208.8

Q ss_pred             ccccceeeeecCcccccc-cCCCCCceeeeccCCC--ccccccc------CCCC------ceEEeccCCCceEEEE----
Q 037555            3 AATRETVERHGNDGLDTL-ESVPDAVPAVFTEPPI--EDQLAWH------TLWP------ESHKLYGHGNELFSLC----   63 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~------~~~~------~~~~~~~h~~~v~~~~----   63 (298)
                      ++.++.++..+++..... .+|...|.++.|.|..  +..++++      .+|+      .+..+.+|...|.++.    
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG  122 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence            567788888888765554 3789999999999653  5666655      3453      5678889999999995    


Q ss_pred             --EcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccc----cEEEEE----EcCCCCEEEEEeCCCeEEEEEe
Q 037555           64 --CDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSL----TVTQIR----FSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        64 --~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                        |+|++++|++++.     |+.|++||+.+++ .+..+..|..    .+.+++    |+|+++++++++.||.|++||+
T Consensus       123 ~~~s~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSR-----DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL  197 (357)
T ss_dssp             GGCC-CCCEEEEEET-----TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred             cccCCCccEEEEEeC-----CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence              4689999999954     8999999999876 5666655544    888998    7889999999999999999999


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEcc---CCCEEEEeeCCCeEEEEEccCCcceeeee--ecCCCCCceEEEEEee
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNP---FGHEFATGSRDKTVKIWAVENKSSVKQIL--ALPPFNSSVTALSWVG  207 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~v~~~~~~~  207 (298)
                      +..       .. .....|...|.+++|+|   ++++|++++.||.|++||+++.+....+.  .+..|...|.+++|+|
T Consensus       198 ~~~-------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  269 (357)
T 3i2n_A          198 RNM-------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP  269 (357)
T ss_dssp             TTT-------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET
T ss_pred             ccC-------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC
Confidence            863       33 33466889999999999   89999999999999999999876655322  2336889999999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC---CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE-
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS---TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA-  283 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-  283 (298)
                      ++.    .++++++.||.|++||++.............   .......+..+.+|...|++++|+|++       .+|+ 
T Consensus       270 ~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~  338 (357)
T 3i2n_A          270 QNR----ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-------RGLCV  338 (357)
T ss_dssp             TEE----EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-------TTEEE
T ss_pred             CCC----cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC-------CeEEE
Confidence            882    3899999999999999987643321111000   001122333356799999999999999       6776 


Q ss_pred             eeeCCCcEEEeEec
Q 037555          284 SCGADNTVRVFQVN  297 (298)
Q Consensus       284 s~~~d~~i~iw~~~  297 (298)
                      +++.|+.|++||+.
T Consensus       339 s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          339 CSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEETTSEEEEEEEC
T ss_pred             EecCCCcEEEEECC
Confidence            89999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3e-34  Score=254.28  Aligned_cols=265  Identities=17%  Similarity=0.230  Sum_probs=200.9

Q ss_pred             ccccceeeeecC-----cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcC
Q 037555            3 AATRETVERHGN-----DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDH   66 (298)
Q Consensus         3 ~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~   66 (298)
                      ++.++.|+..++     .....+.+|...|.++.++ |.+..++++      ++|+     ....+.+|...|.+++|+|
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~  482 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL  482 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC
Confidence            455667765543     3456789999999999999 566666665      5674     4678889999999999999


Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeec---cccccccEEEEEEcCCC--CEEEEEeCCCeEEEEEeccCCCCccc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR---LQSHSLTVTQIRFSHDD--NLLLSVSRDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (298)
                      ++++|++++.     |++|++||.........   ..+|...|.+++|+|++  ..+++++.|+.|++||++.       
T Consensus       483 ~~~~l~s~s~-----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-------  550 (694)
T 3dm0_A          483 DNRQIVSASR-----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-------  550 (694)
T ss_dssp             TSSCEEEEET-----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-------
T ss_pred             CCCEEEEEeC-----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-------
Confidence            9999999964     99999999865433222   35689999999999986  5899999999999999987       


Q ss_pred             eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      ......+..|...|.+++|+|++++|++++.||.|++||+++++.+.   .+. +...+.+++|+|++     .+++++ 
T Consensus       551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~sp~~-----~~l~~~-  620 (694)
T 3dm0_A          551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY---SLE-ANSVIHALCFSPNR-----YWLCAA-  620 (694)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE---CCB-CSSCEEEEEECSSS-----SEEEEE-
T ss_pred             CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE---Eec-CCCcEEEEEEcCCC-----cEEEEE-
Confidence            56677888999999999999999999999999999999999987765   443 45789999999987     566655 


Q ss_pred             cCCcEEEEEeeecccccccCCCCCCccee---eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          222 ESGVIELWSISVNRTNDVSTPAPSTANII---IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .++.|++||+++.................   ........+...+++++|+|++       .+|++|+.||+|++|++.
T Consensus       621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-------~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-------STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-------SEEEEEETTSEEEEEEC-
T ss_pred             cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-------CEEEEEcCCCeEEEEecc
Confidence            46679999998763221110000000000   0000011122347899999999       899999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-34  Score=237.78  Aligned_cols=250  Identities=18%  Similarity=0.261  Sum_probs=207.7

Q ss_pred             ccccceeeeecCcccccccC-CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLES-VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      ++.++.++..+|+....+.. |...|.++.+.| .+..++.+      .+|+     .+..+.+|...|.+++|+  +..
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~  188 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHV  188 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTE
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCE
Confidence            45677888888888887776 788999999995 56666555      3553     477888999999999994  579


Q ss_pred             EEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           71 VASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      |++++     .|+.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++||++.       ......+.
T Consensus       189 l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~  256 (401)
T 4aez_A          189 LSSGS-----RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-------SIPKFTKT  256 (401)
T ss_dssp             EEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-------SSEEEEEC
T ss_pred             EEEEc-----CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC-------CCccEEec
Confidence            99995     49999999998 4566777889999999999999999999999999999999987       45667778


Q ss_pred             ccCCceEEEEEccCC-CEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE--eecCC
Q 037555          150 AHKRIIWSCSWNPFG-HEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV--GMESG  224 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~-~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~--g~~dg  224 (298)
                      .|...|.+++|+|++ .++++++  .|+.|++||+++++...   .+. +...+.+++|+|++     .++++  |+.||
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~---~~~-~~~~v~~~~~s~~~-----~~l~~~~g~~dg  327 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN---TVD-AGSQVTSLIWSPHS-----KEIMSTHGFPDN  327 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE---EEE-CSSCEEEEEECSSS-----SEEEEEECTTTC
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE---EEe-CCCcEEEEEECCCC-----CeEEEEeecCCC
Confidence            899999999999966 5666655  79999999999988776   333 56789999999998     67887  55899


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|++|++.+.             ...... .+.+|...|.+++|+|++       .+|++++.||.|++|++.
T Consensus       328 ~i~v~~~~~~-------------~~~~~~-~~~~h~~~v~~~~~s~dg-------~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          328 NLSIWSYSSS-------------GLTKQV-DIPAHDTRVLYSALSPDG-------RILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EEEEEEEETT-------------EEEEEE-EEECCSSCCCEEEECTTS-------SEEEEECTTSEEEEEECC
T ss_pred             cEEEEecCCc-------------cceeEE-EecCCCCCEEEEEECCCC-------CEEEEEeCCCcEEEEECC
Confidence            9999999875             222222 245799999999999999       899999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-33  Score=231.08  Aligned_cols=237  Identities=11%  Similarity=0.122  Sum_probs=195.6

Q ss_pred             ccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           20 LESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      +..|.+.|.++.+. |.+..++.+      .+|+       .+..+.+|...|++++|+|++++|++++.     |+.|+
T Consensus         4 ~~~~~~~i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~   77 (372)
T 1k8k_C            4 HSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAY   77 (372)
T ss_dssp             EESCSSCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEE
T ss_pred             ecccCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-----CCeEE
Confidence            45688999999999 556666555      3452       56778899999999999999999999954     89999


Q ss_pred             EEEcCCceeeec--cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555           87 LWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG  164 (298)
Q Consensus        87 vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (298)
                      +||+.+++....  +..|...|.+++|+|++++|++++.|+.|++||++.....   .........|...|.+++|+|++
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---eeeeeeecccCCCeeEEEEcCCC
Confidence            999988765433  4668999999999999999999999999999999874321   11223335688999999999999


Q ss_pred             CEEEEeeCCCeEEEEEcc------------------CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          165 HEFATGSRDKTVKIWAVE------------------NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       165 ~~l~~~~~dg~i~~wd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      ++|++++.||.|++||++                  .++...   .+..|...|.+++|+|++     .+|++++.|+.|
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i  226 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF---ESSSSCGWVHGVCFSANG-----SRVAWVSHDSTV  226 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE---ECCCCSSCEEEEEECSSS-----SEEEEEETTTEE
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE---ecCCCCCeEEEEEECCCC-----CEEEEEeCCCEE
Confidence            999999999999999964                  334444   666789999999999998     799999999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++||++++             +.+..+   ..|...|.+++|+|++       .+|+++ .|+.|++|+++
T Consensus       227 ~i~d~~~~-------------~~~~~~---~~~~~~v~~~~~~~~~-------~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          227 CLADADKK-------------MAVATL---ASETLPLLAVTFITES-------SLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             EEEEGGGT-------------TEEEEE---ECSSCCEEEEEEEETT-------EEEEEE-TTSSCEEEEEE
T ss_pred             EEEECCCC-------------ceeEEE---ccCCCCeEEEEEecCC-------CEEEEE-eCCeEEEEEcc
Confidence            99999877             555554   3588899999999999       777776 89999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.5e-35  Score=245.89  Aligned_cols=255  Identities=16%  Similarity=0.156  Sum_probs=194.1

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCc
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAA   82 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d   82 (298)
                      .....+|...|.+++|.|.....++++      .+|+.       ...+.+|.+.|++++|+| ++.+|++++     .|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-----~D  186 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-----ME  186 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-----SS
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-----CC
Confidence            344567888999999997666677665      46742       344568999999999998 688999995     59


Q ss_pred             eEEEEEEcCCceeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           83 AEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      ++|++||++++......  ..+...+.+++|+|++++|++|+.||.|++||++.        ..+..+..|...|.+++|
T Consensus       187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--------~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG--------KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS--------CBCCCSBCCSSCEEEEEE
T ss_pred             CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc--------ceeEEEecccceEEeeee
Confidence            99999999865443322  23445678999999999999999999999999863        345667889999999999


Q ss_pred             ccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555          161 NPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV  239 (298)
Q Consensus       161 ~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  239 (298)
                      +|++. +|++++.|+.|++||+++.+....+....+|...|++++|+|++     .+|++++.|+.|++||+.++.....
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-----~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-----ARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-----SEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-----CeeEEEcCCCEEEEEECCCCccceE
Confidence            99875 78899999999999999877665444556789999999999998     7999999999999999976532211


Q ss_pred             cCCC---------------------------C---------CCcceeeeec--------c-CCcccceEEEE-EeecCCC
Q 037555          240 STPA---------------------------P---------STANIIIRFD--------P-FACHVAAVNRM-AWKTHEK  273 (298)
Q Consensus       240 ~~~~---------------------------~---------~~~~~~~~~~--------~-~~~~~~~v~~~-~~~~~~~  273 (298)
                      ....                           +         ...+.+..+.        . ..+|...|.++ +|+|++ 
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-  412 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-  412 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-
Confidence            0000                           0         0001111111        0 23577778887 699999 


Q ss_pred             CCCCcceEEEeeeCCCcEEEeEec
Q 037555          274 PKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       274 ~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            .+|++++ |+.|+||+++
T Consensus       413 ------~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          413 ------DTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             ------SCEEEEC-SSEEEECCCC
T ss_pred             ------CEEEEEc-CCcEEEEECC
Confidence                  7888876 8899999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-35  Score=242.03  Aligned_cols=224  Identities=18%  Similarity=0.209  Sum_probs=173.2

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      +..+.++|++++|+|++++|++++     .|+.|++|++.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            444778999999999999999994     5899999999988  778889999999999999999999999999999999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeec
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGL  208 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  208 (298)
                      ||+.....    ......+..|...|.+++|+|++++|++++.|+.|++||+++.+.......+.. |...|.+++|+|+
T Consensus        82 wd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           82 YEKRPDGT----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             C------C----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             EEcCCCCc----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            99987431    224566778999999999999999999999999999999998764222225555 8999999999998


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCC--CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP--STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                      +     .+|++++.|+.|++||++............  ........+..+ +|...|.+++|+|++       .+|++++
T Consensus       158 ~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-------~~l~~~~  224 (377)
T 3dwl_C          158 N-----VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-------NALAYAG  224 (377)
T ss_dssp             S-----SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-------SCEEEEE
T ss_pred             C-----CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-------CEEEEEe
Confidence            8     799999999999999997543211111000  000112223334 799999999999999       8999999


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      .|+.|++||++
T Consensus       225 ~d~~i~iwd~~  235 (377)
T 3dwl_C          225 HDSSVTIAYPS  235 (377)
T ss_dssp             TTTEEC-CEEC
T ss_pred             CCCcEEEEECC
Confidence            99999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=230.37  Aligned_cols=259  Identities=16%  Similarity=0.217  Sum_probs=205.4

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI   85 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i   85 (298)
                      ...+.+|.+.|.++.+.| .+..++++      .+|+     .+..+.+|...|.+++|+|++++|++++.     |+.|
T Consensus        25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i   98 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-----DYSI   98 (369)
T ss_dssp             EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TTEE
T ss_pred             cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-----CCeE
Confidence            345789999999999994 56666665      3553     57788899999999999999999999954     8999


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCCcc----ceeeeEEeeccCC--c
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTGEI----DYQLIARQEAHKR--I  154 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~----~~~~~~~~~~~~~--~  154 (298)
                      ++||+.+++.+..+. +...|.+++|+|+++++++++.+     +.|++||+........    .......+..|..  .
T Consensus        99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            999999999888887 88999999999999999999999     9999999987543211    0113344455655  8


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          155 IWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +.+++|+|++++|++++.||.|++||+++ .....   .+..|...|.+++|+|++     .+|++++.|+.|++||+++
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD---SIDLHEKSISDMQFSPDL-----TYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE---EEECCSSCEEEEEECTTS-----SEEEEEETTSEEEEEETTT
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE---EEecCCCceeEEEECCCC-----CEEEEecCCceEEEEECCC
Confidence            99999999999999999999999999998 45444   555688999999999998     7999999999999999986


Q ss_pred             cccccccCCCC---------CCcc----------------------eee--------eeccCCcccceEEEEEeecCCCC
Q 037555          234 NRTNDVSTPAP---------STAN----------------------III--------RFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       234 ~~~~~~~~~~~---------~~~~----------------------~~~--------~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      ...........         ....                      .+.        .+..+.+|...|.+++|+|++  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~--  327 (369)
T 3zwl_B          250 LQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG--  327 (369)
T ss_dssp             CCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS--
T ss_pred             CceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC--
Confidence            54322111000         0000                      000        111234688999999999999  


Q ss_pred             CCCcceEEEeeeCCCcEEEeEec
Q 037555          275 KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           .+|++++.||.|++|+++
T Consensus       328 -----~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          328 -----TSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             -----SEEEEEETTSEEEEEEEC
T ss_pred             -----CEEEEEcCCCeEEEEECc
Confidence                 899999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=235.98  Aligned_cols=266  Identities=15%  Similarity=0.164  Sum_probs=202.4

Q ss_pred             ccccceeee----ecCc------ccccccC----------CCCCceeeeccCCCccccccc------CCCC----ceEEe
Q 037555            3 AATRETVER----HGND------GLDTLES----------VPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKL   52 (298)
Q Consensus         3 ~~~~~~~~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~   52 (298)
                      ++.++.++.    .+++      ....+..          |.+.|.++.+.| .+..++.+      .+|+    .+..+
T Consensus        67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~  145 (425)
T 1r5m_A           67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNKTGALLNVL  145 (425)
T ss_dssp             BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE
T ss_pred             CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeec
Confidence            345666666    6666      3444433          688999999994 56666554      3453    56778


Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-----------------------------------
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-----------------------------------   97 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-----------------------------------   97 (298)
                      .+|...|.+++|+|++++|++++.     |+.|++||+.+++.+.                                   
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDV-----ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF  220 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEET-----TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred             cCCCccEEEEEECCCCCEEEEEec-----CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence            899999999999999999999964     7888888886654332                                   


Q ss_pred             ---------------------ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           98 ---------------------RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        98 ---------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                                           .+..|...|.+++|+|++++|++++.|+.|++||+..       ......+..|...|.
T Consensus       221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~  293 (425)
T 1r5m_A          221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-------GNSQNCFYGHSQSIV  293 (425)
T ss_dssp             EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-------BSCSEEECCCSSCEE
T ss_pred             EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------CccceEecCCCccEE
Confidence                                 3445778899999999999999999999999999987       455667778999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      +++|+|++ ++++++.|+.|++||+++.+.+.   .+..+...+.+++|+|++     .+|++++.||.|++||+++...
T Consensus       294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~~~~~~~~  364 (425)
T 1r5m_A          294 SASWVGDD-KVISCSMDGSVRLWSLKQNTLLA---LSIVDGVPIFAGRISQDG-----QKYAVAFMDGQVNVYDLKKLNS  364 (425)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEETTTTEEEE---EEECTTCCEEEEEECTTS-----SEEEEEETTSCEEEEECHHHHC
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEECCCCcEeE---ecccCCccEEEEEEcCCC-----CEEEEEECCCeEEEEECCCCcc
Confidence            99999999 99999999999999999887766   555678899999999998     7999999999999999987642


Q ss_pred             ccccCCCCC----CcceeeeeccCCcccc--eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          237 NDVSTPAPS----TANIIIRFDPFACHVA--AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       237 ~~~~~~~~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .........    .......+..+..|..  .|.+++|+|++       .+|++++.||.|++|+++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-------NKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             --------------CEECCEEEEECCTTCCCCEEEEEECTTS-------SEEEEEESSSCCEEEECC
T ss_pred             ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-------ceEEEEecCceEEEEeec
Confidence            111000000    0000112223456765  99999999999       899999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=255.21  Aligned_cols=247  Identities=21%  Similarity=0.312  Sum_probs=201.6

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTA   81 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~   81 (298)
                      +..+.+|.+.|.++.++ |.+..++++      .+|+       ....+.+|.++|++++|+|+  +++|++++.     
T Consensus         2 ~~~l~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-----   75 (753)
T 3jro_A            2 VVIANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-----   75 (753)
T ss_dssp             ------CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-----
T ss_pred             eeecccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-----
Confidence            45678999999999999 556666665      3563       35678899999999999988  999999954     


Q ss_pred             ceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                      ||.|++||+.+++  .+..+.+|...|.+++|+|+  ++.+++++.||.|++||++....     .....+..|...|.+
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNS  150 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEE
T ss_pred             CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEE
Confidence            9999999999886  66777889999999999999  99999999999999999987532     234456789999999


Q ss_pred             EEEcc-------------CCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCCCceEEEEEeec---cccCCccEEEEe
Q 037555          158 CSWNP-------------FGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFNSSVTALSWVGL---DRQKNHGFLAVG  220 (298)
Q Consensus       158 ~~~~~-------------~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~g  220 (298)
                      ++|+|             ++.+|++|+.||.|++||+++.... .....+.+|...|++++|+|+   +     .++++|
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-----~~l~s~  225 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-----SYLASV  225 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-----EEEEEE
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-----CEEEEE
Confidence            99999             5899999999999999999887543 233366789999999999999   6     799999


Q ss_pred             ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.||.|++||+++....           ....+.....|...|++++|+|++       .+|++++.||.|++|+++
T Consensus       226 s~Dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg-------~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             ESSSCEEEEEESSSSSC-----------CBCCBSSSSCCSSCCCCEEECTTT-------CCEEEECSSSCEECCBCC
T ss_pred             ecCCEEEEecCCCCCCc-----------ceeEEeccCCCCCceEEEEEcCCC-------CEEEEEcCCCEEEEEecC
Confidence            99999999999875321           112222245688999999999999       899999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.1e-33  Score=225.78  Aligned_cols=232  Identities=19%  Similarity=0.257  Sum_probs=197.1

Q ss_pred             ccCCCCCceeeeccCCCccccccc-----CCCC--------ceEEec--cCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           20 LESVPDAVPAVFTEPPIEDQLAWH-----TLWP--------ESHKLY--GHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~--~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      ..+|.+.|.++.+. |.+..++.+     .+|+        .+..+.  +|...|.+++|+|++++|++++     .|+.
T Consensus        47 ~~~h~~~v~~~~~~-~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~  120 (337)
T 1gxr_A           47 TLNHGEVVCAVTIS-NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-----EAST  120 (337)
T ss_dssp             EECCSSCCCEEEEC-SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-----SSSE
T ss_pred             eccCCCceEEEEEe-cCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-----CCCc
Confidence            34799999999998 556666554     3442        233333  7999999999999999999995     4899


Q ss_pred             EEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           85 IWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        85 i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      |++||+.+++  ....+..|...|.+++|+|+++++++++.||.|++||++.       ......+..|...|.+++|+|
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~  193 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECT
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CceeeeeecccCceEEEEECC
Confidence            9999998876  5566778999999999999999999999999999999987       566777888999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                      ++++|++++.||.|++||+++.+...   .+ .+...+.+++|+|++     .++++++.++.|++||++..        
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~---~~-~~~~~v~~~~~s~~~-----~~l~~~~~~~~i~~~~~~~~--------  256 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQ---QH-DFTSQIFSLGYCPTG-----EWLAVGMESSNVEVLHVNKP--------  256 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTSS--------
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEe---ee-cCCCceEEEEECCCC-----CEEEEEcCCCcEEEEECCCC--------
Confidence            99999999999999999999887766   33 267889999999998     79999999999999999865        


Q ss_pred             CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           ... .   +..|...|.+++|+|++       .+|++++.||.|++||++
T Consensus       257 -----~~~-~---~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          257 -----DKY-Q---LHLHESCVLSLKFAYCG-------KWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             -----CEE-E---ECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEETT
T ss_pred             -----CeE-E---EcCCccceeEEEECCCC-------CEEEEecCCCcEEEEECC
Confidence                 221 2   34688999999999999       899999999999999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.6e-34  Score=233.96  Aligned_cols=256  Identities=12%  Similarity=0.123  Sum_probs=199.5

Q ss_pred             ccccceeeeecCccccccc--CCCCCceeeeccCCCccccccc------CCCC----ceEEecc---CCCceEEEEEcCC
Q 037555            3 AATRETVERHGNDGLDTLE--SVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYG---HGNELFSLCCDHQ   67 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~---h~~~v~~~~~s~~   67 (298)
                      ++.++.++..+++....+.  +|...|.++.|.|..+..++++      .+|+    .+..+..   |...|.+++|+|+
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC
Confidence            4567888888888777765  6999999999996566666665      3553    3444544   4488999999999


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      +++|++++     .|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||++.....   ...+.
T Consensus       175 ~~~l~~~~-----~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~  245 (383)
T 3ei3_B          175 RQMLATGD-----STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK---NSYIA  245 (383)
T ss_dssp             TTEEEEEE-----TTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST---TCEEE
T ss_pred             CCEEEEEC-----CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc---cceEE
Confidence            99999995     4899999999 4778888899999999999999998 9999999999999999874321   12333


Q ss_pred             EeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecC----CCCC----------ceEEEEEeecccc
Q 037555          147 RQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALP----PFNS----------SVTALSWVGLDRQ  211 (298)
Q Consensus       147 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~~----------~v~~~~~~~~~~~  211 (298)
                      .+ .|...|.+++|+| ++++|++++.|+.|++||+++.+....+....    .+..          .+..++|+|++  
T Consensus       246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg--  322 (383)
T 3ei3_B          246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD--  322 (383)
T ss_dssp             EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT--
T ss_pred             Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc--
Confidence            33 6899999999999 99999999999999999999877665332211    1222          33345555655  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .+  +|+.|+.|++||+.++             +.+..+. ...|...+..++|+|++       .+|++++ |+.|
T Consensus       323 ---~~--s~s~d~~i~iwd~~~~-------------~~~~~l~-~~~~~~~~~~~~~s~~g-------~~l~s~s-d~~i  375 (383)
T 3ei3_B          323 ---QL--LLNDKRTIDIYDANSG-------------GLVHQLR-DPNAAGIISLNKFSPTG-------DVLASGM-GFNI  375 (383)
T ss_dssp             ---TT--CTTCCCCEEEEETTTC-------------CEEEEEC-BTTBCSCCCEEEECTTS-------SEEEEEE-TTEE
T ss_pred             ---cc--ccCCCCeEEEEecCCC-------------ceeeeec-CCCCCceEEEEEEecCc-------cEEEEec-CCcE
Confidence               34  7778999999999876             5555543 12356778888999999       8999997 9999


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      ++||++
T Consensus       376 ~iw~~~  381 (383)
T 3ei3_B          376 LIWNRE  381 (383)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.8e-33  Score=235.83  Aligned_cols=254  Identities=19%  Similarity=0.316  Sum_probs=199.1

Q ss_pred             ccccCCCCCceeeeccCCCccccccc------CCC---------------CceEEeccCCCceEEEEEcCCCC-EEEeEe
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLW---------------PESHKLYGHGNELFSLCCDHQGK-LVASSC   75 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~---------------~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~   75 (298)
                      .....|.+.|..+.+.|.....++++      .+|               .....+.+|...|++++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            55678999999999996545555554      223               34677889999999999999998 999994


Q ss_pred             ccCCCCceEEEEEEcCCcee-------eeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           76 KAQSTAAAEIWLWEVGSWKA-------MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        76 ~~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                           .||.|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++....    ......
T Consensus       202 -----~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----~~~~~~  272 (430)
T 2xyi_A          202 -----DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----SKPSHT  272 (430)
T ss_dssp             -----TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----SSCSEE
T ss_pred             -----CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----CcceeE
Confidence                 599999999987322       345668999999999999 678999999999999999987432    134556


Q ss_pred             eeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          148 QEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                      +..|...|++++|+|++. +|++|+.||.|++||++.. ..+.   .+..|...|.+++|+|++.    .+|++++.|+.
T Consensus       273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---~~~~h~~~v~~i~~sp~~~----~~l~s~~~d~~  345 (430)
T 2xyi_A          273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---SFESHKDEIFQVQWSPHNE----TILASSGTDRR  345 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEECCSSCEEEEEECSSCT----TEEEEEETTSC
T ss_pred             eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---EeecCCCCEEEEEECCCCC----CEEEEEeCCCc
Confidence            678999999999999886 7899999999999999974 3344   5556889999999999884    57999999999


Q ss_pred             EEEEEeeecccccccC-CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVST-PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~  297 (298)
                      |++||+.......... ...   .....+..+.+|...|.+++|+|++       . +|++++.||.|++|+++
T Consensus       346 i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~-------~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAED---GPPELLFIHGGHTAKISDFSWNPNE-------PWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHH---CCTTEEEECCCCSSCEEEEEECSSS-------TTEEEEEETTSEEEEEEEC
T ss_pred             EEEEeCCCCccccCcccccc---CCcceEEEcCCCCCCceEEEECCCC-------CCEEEEEECCCCEEEeEcc
Confidence            9999998732111000 000   0011222256799999999999998       5 99999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-34  Score=236.91  Aligned_cols=252  Identities=13%  Similarity=0.221  Sum_probs=205.7

Q ss_pred             ccccceeeeecCcc--cccccCCCCCceeeeccCCCccccccc------CCC---------CceEEeccCCCceEEEEEc
Q 037555            3 AATRETVERHGNDG--LDTLESVPDAVPAVFTEPPIEDQLAWH------TLW---------PESHKLYGHGNELFSLCCD   65 (298)
Q Consensus         3 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~h~~~v~~~~~s   65 (298)
                      ++.++.++..+++.  ......|...|.++.|. |.+..++++      .+|         ..+..+.+|...|++++|+
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC-SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred             CCeEEEEEccCCCCCcEEEEEecCCceEEEEEC-CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence            44678888887763  22233688899999998 556666554      234         2567788999999999999


Q ss_pred             CC-CCEEEeEeccCCCCceEEEEEEcCCce------eee---ccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEecc
Q 037555           66 HQ-GKLVASSCKAQSTAAAEIWLWEVGSWK------AMG---RLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        66 ~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  134 (298)
                      |+ +.+|++++     .|+.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|++++.||.|++||++.
T Consensus       123 ~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          123 AKQDNVLASGG-----NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             SSSTTBEEEEC-----SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             CCCCCEEEEEc-----CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence            98 89999994     58999999998876      322   24679999999999998 78999999999999999987


Q ss_pred             CCCCccceeeeEEeecc------CCceEEEEEccCC-CEEEEeeCCC---eEEEEEccCC-cceeeeeecC-CCCCceEE
Q 037555          135 TGTGEIDYQLIARQEAH------KRIIWSCSWNPFG-HEFATGSRDK---TVKIWAVENK-SSVKQILALP-PFNSSVTA  202 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~wd~~~~-~~~~~~~~~~-~~~~~v~~  202 (298)
                             ...+..+..+      ...|.+++|+|++ .+|++++.|+   .|++||+++. ....   .+. +|...|.+
T Consensus       198 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~---~~~~~~~~~v~~  267 (416)
T 2pm9_A          198 -------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ---TLNQGHQKGILS  267 (416)
T ss_dssp             -------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB---CCCSCCSSCEEE
T ss_pred             -------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE---EeecCccCceeE
Confidence                   4555666655      7889999999987 6899999998   9999999986 3444   555 78899999


Q ss_pred             EEEee-ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          203 LSWVG-LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       203 ~~~~~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      ++|+| ++     .+|++++.|+.|++||+++.             +.+..+   .+|...|.+++|+|+++      .+
T Consensus       268 ~~~s~~~~-----~~l~s~~~dg~v~~wd~~~~-------------~~~~~~---~~~~~~v~~~~~s~~~~------~~  320 (416)
T 2pm9_A          268 LDWCHQDE-----HLLLSSGRDNTVLLWNPESA-------------EQLSQF---PARGNWCFKTKFAPEAP------DL  320 (416)
T ss_dssp             EEECSSCS-----SCEEEEESSSEEEEECSSSC-------------CEEEEE---ECSSSCCCCEEECTTCT------TE
T ss_pred             EEeCCCCC-----CeEEEEeCCCCEEEeeCCCC-------------ccceee---cCCCCceEEEEECCCCC------CE
Confidence            99999 66     79999999999999999876             444443   46899999999999873      69


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      |++++.|+.|++|+++
T Consensus       321 l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQ  336 (416)
T ss_dssp             EEECCSSSEEEEEESC
T ss_pred             EEEEecCCcEEEEEcc
Confidence            9999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.6e-34  Score=234.61  Aligned_cols=251  Identities=17%  Similarity=0.243  Sum_probs=197.2

Q ss_pred             cccCCCCCceeeeccCC---Ccc-ccccc-----CCCC-----ceEEecc-----CCCceEEEEEcCC----CCEEEeEe
Q 037555           19 TLESVPDAVPAVFTEPP---IED-QLAWH-----TLWP-----ESHKLYG-----HGNELFSLCCDHQ----GKLVASSC   75 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~---~~~-~~~~~-----~~~~-----~~~~~~~-----h~~~v~~~~~s~~----~~~l~~~~   75 (298)
                      ...+|...|.++.|.|.   ... .++..     .+|+     .+..+..     |...|++++|+|+    +++|++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999963   222 33332     3553     2334432     6678999999998    67899995


Q ss_pred             ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe---ecc
Q 037555           76 KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ---EAH  151 (298)
Q Consensus        76 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~  151 (298)
                           .|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||++.       ...+..+   ..|
T Consensus        93 -----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~  160 (366)
T 3k26_A           93 -----SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-------DTLVAIFGGVEGH  160 (366)
T ss_dssp             -----TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-------TEEEEEECSTTSC
T ss_pred             -----CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-------CeEEEEecccccc
Confidence                 499999999999999999999999999999999 899999999999999999987       4455555   679


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee-------------------------eeecCCCCCceEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ-------------------------ILALPPFNSSVTALSWV  206 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~  206 (298)
                      ...|.+++|+|++++|++++.||.|++||+++.+....                         +.....|...|.+++|+
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            99999999999999999999999999999997654331                         11223388899999998


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC--CCCCCCcceEEEe
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH--EKPKNSRTMQLAS  284 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~l~s  284 (298)
                        +     .++++++.|+.|++||+++............  .....+..+..|...|.+++|+|+  +       .+|++
T Consensus       241 --~-----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~-------~~l~~  304 (366)
T 3k26_A          241 --G-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSE--SNVTILGRFDYSQCDIWYMRFSMDFWQ-------KMLAL  304 (366)
T ss_dssp             --T-----TEEEEECSSSEEEEEEESSTTCCGGGCCTTC--CCEEEEEEEECSSCCSSCCCCEECTTS-------SEEEE
T ss_pred             --C-----CEEEEEecCCEEEEEeCCCccccccccccCC--cchheeccccccCCcEEEEEEcCCCCC-------cEEEE
Confidence              4     6899999999999999987644222111111  111223335568899999999999  8       89999


Q ss_pred             eeCCCcEEEeEec
Q 037555          285 CGADNTVRVFQVN  297 (298)
Q Consensus       285 ~~~d~~i~iw~~~  297 (298)
                      ++.||.|++||++
T Consensus       305 ~~~dg~i~vwd~~  317 (366)
T 3k26_A          305 GNQVGKLYVWDLE  317 (366)
T ss_dssp             ECTTSCEEEEECC
T ss_pred             EecCCcEEEEECC
Confidence            9999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-34  Score=239.74  Aligned_cols=261  Identities=14%  Similarity=0.204  Sum_probs=196.0

Q ss_pred             ecCcccccc-cCCCCCceeeeccCCCccccccc------CCCCce----------EEeccCCCceEEEEEcCCCCEEEeE
Q 037555           12 HGNDGLDTL-ESVPDAVPAVFTEPPIEDQLAWH------TLWPES----------HKLYGHGNELFSLCCDHQGKLVASS   74 (298)
Q Consensus        12 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~h~~~v~~~~~s~~~~~l~~~   74 (298)
                      .+|+.+..+ .+|.+.|.++.+.|..+..++++      ++|+..          ....+|...|++++|+|++++|+++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            567778888 89999999999995367777765      456421          1122699999999999999999999


Q ss_pred             eccCCCCceEEEEEEcC---Cceeeecccc------------ccccEEEEE--EcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           75 CKAQSTAAAEIWLWEVG---SWKAMGRLQS------------HSLTVTQIR--FSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        75 ~~~~~~~d~~i~vw~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      +.     |+.|++||++   +++....+..            +...+.++.  +++++++|++++.|+.|++||++.   
T Consensus       130 s~-----dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---  201 (437)
T 3gre_A          130 SK-----DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---  201 (437)
T ss_dssp             ET-----TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---
T ss_pred             eC-----CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---
Confidence            54     9999999995   4443333222            445566666  557899999999999999999987   


Q ss_pred             CccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccCCc
Q 037555          138 GEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       138 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  214 (298)
                          ...+..+..  |...|.+++|+|++++|++++.||.|++||+++++.+.   .+. .+...|.+++|+|.- ++++
T Consensus       202 ----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~-s~~~  273 (437)
T 3gre_A          202 ----LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFY-GKNS  273 (437)
T ss_dssp             ----CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTT-CTTE
T ss_pred             ----CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEecccc-CCCc
Confidence                556677776  88999999999999999999999999999999877766   332 467789999887742 2233


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec---------cCCc--ccceEEEEEeecCCCCCCCcceEEE
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD---------PFAC--HVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      .+|++|+.|+.|++||+++++.............. ..+.         .+.+  |...|++++|+ ++       .+|+
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-------~~l~  344 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM-EHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-------KILL  344 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG-GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-------EEEE
T ss_pred             cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc-ceecccccccccceecccccCCceEEEEEC-Cc-------eEEE
Confidence            79999999999999999876422211110000000 0000         1233  88899999999 66       7999


Q ss_pred             eeeCCCcEEEeEec
Q 037555          284 SCGADNTVRVFQVN  297 (298)
Q Consensus       284 s~~~d~~i~iw~~~  297 (298)
                      +++.|+.|++||++
T Consensus       345 s~~~d~~i~~wd~~  358 (437)
T 3gre_A          345 TDEATSSIVMFSLN  358 (437)
T ss_dssp             EEGGGTEEEEEETT
T ss_pred             ecCCCCeEEEEECC
Confidence            99999999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=240.90  Aligned_cols=270  Identities=11%  Similarity=0.171  Sum_probs=211.3

Q ss_pred             ccccceeeeec----CcccccccCCCCCceeeeccCCCccccccc------CCCCc--------------eEEeccCCCc
Q 037555            3 AATRETVERHG----NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE--------------SHKLYGHGNE   58 (298)
Q Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~--------------~~~~~~h~~~   58 (298)
                      ++.++.++..+    .+.+..+.+|...|.++.+.|..+..++++      .+|+.              ...+.+|...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            34566777666    357888999999999999996546666655      35532              1123579999


Q ss_pred             eEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCC-CEEEEEeCCC---eE
Q 037555           59 LFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDD-NLLLSVSRDR---QF  127 (298)
Q Consensus        59 v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i  127 (298)
                      |.+++|+|+ +.+|++++     .|+.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|
T Consensus       168 v~~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAG-----SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CCEEEECSSCTTEEEEES-----SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             eeEEEeCCCCCcEEEEEc-----CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            999999999 78999984     5999999999999888887765      7899999999987 6899999998   99


Q ss_pred             EEEEeccCCCCccceeeeEEee-ccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      ++||++...      .....+. .|...|.+++|+| ++++|++++.||.|++||+++++.+.   .+..|...|.+++|
T Consensus       243 ~~~d~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---~~~~~~~~v~~~~~  313 (416)
T 2pm9_A          243 LIWDLRNAN------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---QFPARGNWCFKTKF  313 (416)
T ss_dssp             CEEETTSTT------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE---EEECSSSCCCCEEE
T ss_pred             EEEeCCCCC------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---eecCCCCceEEEEE
Confidence            999998742      3345556 7999999999999 89999999999999999999988776   56678899999999


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeeecccccccCC-C-CCCcc-----------------eeeeeccCCcccceEEEE
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-A-PSTAN-----------------IIIRFDPFACHVAAVNRM  266 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~-~~~~~-----------------~~~~~~~~~~~~~~v~~~  266 (298)
                      +|++.    .+|++++.|+.|++|++........... . .....                 ....+.....|..++.++
T Consensus       314 s~~~~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (416)
T 2pm9_A          314 APEAP----DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA  389 (416)
T ss_dssp             CTTCT----TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred             CCCCC----CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence            99874    6999999999999999987654322110 0 00000                 000001122367788899


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|+|++       .+|++++.|+.|+||++.
T Consensus       390 ~~s~dg-------~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          390 HWAFGG-------KLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             EEETTT-------EEECBCTTSSCBCCBCCC
T ss_pred             EEeeCC-------eEEEEeCCCCeEEEEEec
Confidence            999999       899999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-33  Score=230.61  Aligned_cols=214  Identities=15%  Similarity=0.195  Sum_probs=177.6

Q ss_pred             CCceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcC-CCCEEEEE
Q 037555           46 WPESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSH-DDNLLLSV  121 (298)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~  121 (298)
                      ......+.+|...|++++|+|++ ++|++++.     |+.|++||+.+++....+.  +|...|.+++|+| ++++|+++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSK-----GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEB-----TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcC-----CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            34577889999999999999999 89999954     8999999999887766554  6999999999999 77999999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      +.|+.|++||+....     .........|...|.+++|+|++++|++++.|+.|++||++ ++...   .+..|...|.
T Consensus       138 ~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~---~~~~h~~~v~  208 (383)
T 3ei3_B          138 SIRGATTLRDFSGSV-----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF---KEKLHKAKVT  208 (383)
T ss_dssp             ETTTEEEEEETTSCE-----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE---EEECSSSCEE
T ss_pred             eCCCEEEEEECCCCc-----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE---EeccCCCcEE
Confidence            999999999998421     22222223445889999999999999999999999999995 44444   5667899999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-CCCCCCCcce
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-HEKPKNSRTM  280 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  280 (298)
                      +++|+|++.    .++++++.|+.|++||+++.....         .....+    +|...|.+++|+| ++       .
T Consensus       209 ~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~----~~~~~v~~~~~s~~~~-------~  264 (383)
T 3ei3_B          209 HAEFNPRCD----WLMATSSVDATVKLWDLRNIKDKN---------SYIAEM----PHEKPVNAAYFNPTDS-------T  264 (383)
T ss_dssp             EEEECSSCT----TEEEEEETTSEEEEEEGGGCCSTT---------CEEEEE----ECSSCEEEEEECTTTS-------C
T ss_pred             EEEECCCCC----CEEEEEeCCCEEEEEeCCCCCccc---------ceEEEe----cCCCceEEEEEcCCCC-------C
Confidence            999999982    399999999999999998743211         333333    4889999999999 88       8


Q ss_pred             EEEeeeCCCcEEEeEec
Q 037555          281 QLASCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~~d~~i~iw~~~  297 (298)
                      +|++++.|+.|++||++
T Consensus       265 ~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          265 KLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEEESSSEEEEEETT
T ss_pred             EEEEEcCCCcEEEEECC
Confidence            99999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-33  Score=253.45  Aligned_cols=240  Identities=15%  Similarity=0.239  Sum_probs=207.5

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      ....+.+|.+.|.++.++ |.+..++.+      .+|+     .+..+.+|..+|++++|+|++++|++++     .|+.
T Consensus         5 ~~~~~~~h~~~v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~   78 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----DDFR   78 (814)
T ss_dssp             CEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-----TTSE
T ss_pred             cceeeecCCCceEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-----CCCe
Confidence            356778999999999999 566666665      3564     4678889999999999999999999995     4899


Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-C
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-F  163 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  163 (298)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+...      ......+..|...|.+++|+| +
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------SEEEEEEECCSSCEEEEEEETTE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------ceEEEEEcCCCCcEEEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999863      355677788999999999999 8


Q ss_pred             CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee--ccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      ++.|++++.||.|++||+++......+.  ..+...+.+++|+|  ++     .++++++.||.|++||+.++       
T Consensus       153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~-------  218 (814)
T 3mkq_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDK-----PYMITASDDLTIKIWDYQTK-------  218 (814)
T ss_dssp             EEEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTC-----CEEEEECTTSEEEEEETTTT-------
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCC-----CEEEEEeCCCEEEEEECCCC-------
Confidence            8999999999999999998877665332  23448899999999  66     79999999999999999876       


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            .....+   .+|...|.+++|+|++       .+|++++.||.|++||+.
T Consensus       219 ------~~~~~~---~~~~~~v~~~~~~~~~-------~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          219 ------SCVATL---EGHMSNVSFAVFHPTL-------PIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             ------EEEEEE---ECCSSCEEEEEECSSS-------SEEEEEETTSCEEEEETT
T ss_pred             ------cEEEEE---cCCCCCEEEEEEcCCC-------CEEEEEeCCCeEEEEECC
Confidence                  444443   4688999999999999       899999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=228.90  Aligned_cols=265  Identities=17%  Similarity=0.156  Sum_probs=209.9

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-----eEEe-------------ccCCCceE
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-----SHKL-------------YGHGNELF   60 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-----~~~~-------------~~h~~~v~   60 (298)
                      .++.++...++....+.+|.+.|.++.+.|..+..++++      .+|+.     ...+             .+|...|.
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence            345667788888999999999999999996367777665      34531     1111             25999999


Q ss_pred             EEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC---CCEEEEEeCCCeEEEEEeccCC
Q 037555           61 SLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD---DNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        61 ~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      +++|+| ++.+|++++     .|+.|++||+.+++....+. +...+.++.|+|.   +.++++++.|+.|++||+..  
T Consensus       104 ~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--  175 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--  175 (408)
T ss_dssp             EEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--
T ss_pred             EEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--
Confidence            999999 778999995     48999999999998887776 7888999999984   45999999999999999987  


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeee-------------eecCCCCCceEE
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQI-------------LALPPFNSSVTA  202 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~-------------~~~~~~~~~v~~  202 (298)
                           ...+..+..|...|.+++|+|++. .|++++.||.|++||++........             .....|...|.+
T Consensus       176 -----~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          176 -----GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             -----SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             -----cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence                 455677788999999999999988 5899999999999999876522111             012467889999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC----------------------------------CCcc
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP----------------------------------STAN  248 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----------------------------------~~~~  248 (298)
                      ++|+|++     .+|++++.|+.|++||+++++.........                                  ....
T Consensus       251 ~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~  325 (408)
T 4a11_B          251 LCFTSDG-----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE  325 (408)
T ss_dssp             EEECTTS-----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred             EEEcCCC-----CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence            9999998     799999999999999998765432211100                                  0111


Q ss_pred             eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .   +..+.+|...|++++|+|++       .+|++++.||.|++||++
T Consensus       326 ~---~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          326 Q---ITMLKGHYKTVDCCVFQSNF-------QELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             E---EEEECCCSSCEEEEEEETTT-------TEEEEEETTSCEEEEEEC
T ss_pred             c---eeeeccCCCeEEEEEEcCCC-------CEEEEECCCCeEEEEeCC
Confidence            1   22245799999999999999       899999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-34  Score=244.65  Aligned_cols=205  Identities=9%  Similarity=0.037  Sum_probs=169.2

Q ss_pred             EEeccCCCceEEEEEcCC------CCEEEeEeccCCCCceEEEEEEcCCcee-----------eeccccccccEEEEEEc
Q 037555           50 HKLYGHGNELFSLCCDHQ------GKLVASSCKAQSTAAAEIWLWEVGSWKA-----------MGRLQSHSLTVTQIRFS  112 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~------~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~  112 (298)
                      ..+.+|.+.|.+++|+|+      +.+||+++     .|++|++||+.+++.           ...+.+|...|++++|+
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s-----~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS-----QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEE-----TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEe-----cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence            346678899999999996      57999995     499999999976532           23567899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE--EEccCC-CEEEEeeCCCeEEEEEccCCcceee
Q 037555          113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC--SWNPFG-HEFATGSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~  189 (298)
                      ++ ..|++|+.||+|++||++...      .+...+..|...|.++  .|+|++ ++|++++.|++|++||+++.+....
T Consensus       276 ~~-~~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~  348 (524)
T 2j04_B          276 SP-TTVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT  348 (524)
T ss_dssp             SS-SEEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred             CC-CeEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence            86 489999999999999998632      2344577899999999  578887 8999999999999999998776653


Q ss_pred             eeecCCCC--CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          190 ILALPPFN--SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       190 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                         +.+|.  ..|.+++|+|++     ..+++++.|+.|++||++..             .+...   +.+|...|++|+
T Consensus       349 ---~~~~~~~~~v~~v~fsp~~-----~~l~s~~~d~tv~lwd~~~~-------------~~~~~---l~gH~~~V~sva  404 (524)
T 2j04_B          349 ---TVSRFRGSNLVPVVYCPQI-----YSYIYSDGASSLRAVPSRAA-------------FAVHP---LVSRETTITAIG  404 (524)
T ss_dssp             ---EEEECSCCSCCCEEEETTT-----TEEEEECSSSEEEEEETTCT-------------TCCEE---EEECSSCEEEEE
T ss_pred             ---cccccccCcccceEeCCCc-----CeEEEeCCCCcEEEEECccc-------------cccee---eecCCCceEEEE
Confidence               22333  357899999988     68999999999999999876             44333   336999999999


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+|++       .+|++|+.|++|++||+.
T Consensus       405 ~Sp~g-------~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          405 VSRLH-------PMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CCSSC-------CBCEEEETTTEEECCBSC
T ss_pred             eCCCC-------CeEEEEECCCEEEEEech
Confidence            99999       899999999999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-32  Score=223.39  Aligned_cols=210  Identities=18%  Similarity=0.275  Sum_probs=179.2

Q ss_pred             ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCce-----eeeccccccccEEEEEEcCCCCEEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      ...+|+||.+.|++++|+|+ +++|++|+.     |++|+|||+.+.+     +...+.+|...|.+++|+|++++|+++
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~-----D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASR-----DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEET-----TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcC-----CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            35678999999999999997 689999964     9999999987543     456678999999999999999999999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT  201 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~  201 (298)
                      +.|+.|++|+...       .........+...+..+.+++++++|++++.|+.+++||+.......  .....|...+.
T Consensus       105 ~~d~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~--~~~~~~~~~v~  175 (340)
T 4aow_A          105 SWDGTLRLWDLTT-------GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT--VQDESHSEWVS  175 (340)
T ss_dssp             ETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--ECSSSCSSCEE
T ss_pred             cccccceEEeecc-------cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE--EEeccccCccc
Confidence            9999999999887       45566667778889999999999999999999999999987654432  24567889999


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .++|++++.   ..++++++.|+.|++||+++.             .....   +.+|...|++++|+|++       .+
T Consensus       176 ~~~~~~~~~---~~~~~s~~~d~~i~i~d~~~~-------------~~~~~---~~~h~~~v~~~~~s~~~-------~~  229 (340)
T 4aow_A          176 CVRFSPNSS---NPIIVSCGWDKLVKVWNLANC-------------KLKTN---HIGHTGYLNTVTVSPDG-------SL  229 (340)
T ss_dssp             EEEECSCSS---SCEEEEEETTSCEEEEETTTT-------------EEEEE---ECCCSSCEEEEEECTTS-------SE
T ss_pred             ceEEccCCC---CcEEEEEcCCCEEEEEECCCC-------------ceeeE---ecCCCCcEEEEEECCCC-------CE
Confidence            999998752   257889999999999999876             44444   44699999999999999       89


Q ss_pred             EEeeeCCCcEEEeEec
Q 037555          282 LASCGADNTVRVFQVN  297 (298)
Q Consensus       282 l~s~~~d~~i~iw~~~  297 (298)
                      |++++.|+.|++||++
T Consensus       230 l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          230 CASGGKDGQAMLWDLN  245 (340)
T ss_dssp             EEEEETTCEEEEEETT
T ss_pred             EEEEeCCCeEEEEEec
Confidence            9999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-33  Score=232.12  Aligned_cols=245  Identities=14%  Similarity=0.170  Sum_probs=195.6

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----------ceEEeccCCCceEEEEEcCC----C---CEEE
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----------ESHKLYGHGNELFSLCCDHQ----G---KLVA   72 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----------~~~~~~~h~~~v~~~~~s~~----~---~~l~   72 (298)
                      ...+.+|.+.|.++.+.|   ..++++      .+|+           ....+.+|..+|++++|+|+    +   ++|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            456789999999999985   455544      3442           47888899999999999999    9   9999


Q ss_pred             eEeccCCCCceEEEEEEcCCcee-----eeccccc-----cccEEEEEEc----CCCCE-EEEEeCCCeEEEEEecc---
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSH-----SLTVTQIRFS----HDDNL-LLSVSRDRQFSVFAIQR---  134 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~---  134 (298)
                      +++.     |+.|++|++.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.|++||+..   
T Consensus        86 s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           86 TTSF-----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEET-----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEcC-----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            9954     89999999988876     7778878     5899999999    99999 99999999999999987   


Q ss_pred             ---CCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC---CCceE
Q 037555          135 ---TGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF---NSSVT  201 (298)
Q Consensus       135 ---~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~v~  201 (298)
                         .....  ......+       ..|...|.+++|+|++ +|++++.||.|++||+++.+.+..+.....|   ...|.
T Consensus       161 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          161 ESNSLTLN--WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHHTTTC--CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             ccccceee--ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence               32211  1111133       4478899999999999 9999999999999999988777633221227   88999


Q ss_pred             EEEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeecc----------CCcccceEEEEEe
Q 037555          202 ALSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDP----------FACHVAAVNRMAW  268 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~  268 (298)
                      +++|+|++     .+|++++.|   +.|++||+++.             ..+..+..          ...|...|.+++|
T Consensus       238 ~i~~~~~~-----~~l~~~~~d~~~g~i~i~d~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          238 SVKFSPQG-----SLLAIAHDSNSFGCITLYETEFG-------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             EEEECSST-----TEEEEEEEETTEEEEEEEETTTC-------------CEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             eEEECCCC-----CEEEEEecCCCCceEEEEECCCC-------------cccceeccCcccccccccccccCCcEEEEEE
Confidence            99999998     799999999   99999999876             33333321          0118899999999


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|++       .+|++++.|+.|++||++
T Consensus       300 ~~~~-------~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          300 NDSG-------ETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSS-------SEEEEEETTSEEEEEETT
T ss_pred             CCCC-------CEEEEEeCCCeEEEEEcC
Confidence            9999       899999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5e-33  Score=231.16  Aligned_cols=255  Identities=15%  Similarity=0.220  Sum_probs=202.5

Q ss_pred             ccccceeeeecC----cccccccCCCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceE
Q 037555            3 AATRETVERHGN----DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELF   60 (298)
Q Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~   60 (298)
                      ++.++.++....    ..+..+.+|.+.|.++.+.|..+..++++      .+|+            .+..+.+|...|.
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~  135 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG  135 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence            345556664332    35667889999999999996466666665      3442            3678889999999


Q ss_pred             EEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           61 SLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        61 ~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      +++|+|++ .+|++++     .|+.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.||.|++||++.   
T Consensus       136 ~~~~~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---  207 (402)
T 2aq5_A          136 IVAWHPTAQNVLLSAG-----CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK---  207 (402)
T ss_dssp             EEEECSSBTTEEEEEE-----TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT---
T ss_pred             EEEECcCCCCEEEEEc-----CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC---
Confidence            99999998 6999995     4899999999999998888  78999999999999999999999999999999987   


Q ss_pred             CccceeeeEEe-eccCCc-eEEEEEccCCCEEEEe---eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          138 GEIDYQLIARQ-EAHKRI-IWSCSWNPFGHEFATG---SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                          ...+..+ ..|... +..+.|+|++.+|++|   +.|+.|++||+++.........+ .+...+.+++|+|++   
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~---  279 (402)
T 2aq5_A          208 ----GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDT---  279 (402)
T ss_dssp             ----TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTT---
T ss_pred             ----CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCC---
Confidence                4556666 577765 8999999999999999   78999999999987653333233 366789999999998   


Q ss_pred             CccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          213 NHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       213 ~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                        .+|+ +|+.|+.|++||+.+..            ..+..+..+. |...|.+++|+|++       .++++  .++.+
T Consensus       280 --~~l~~~g~~dg~i~i~d~~~~~------------~~~~~l~~~~-~~~~v~~~~~sp~~-------~~~~s--~~~~~  335 (402)
T 2aq5_A          280 --NIVYLCGKGDSSIRYFEITSEA------------PFLHYLSMFS-SKESQRGMGYMPKR-------GLEVN--KCEIA  335 (402)
T ss_dssp             --TEEEEEETTCSCEEEEEECSST------------TCEEEEEEEC-CSSCCSEEEECCGG-------GSCGG--GTEEE
T ss_pred             --CEEEEEEcCCCeEEEEEecCCC------------cceEeecccc-cCCcccceEEeccc-------cccee--cceeE
Confidence              5665 56689999999998763            1133333222 67899999999998       66654  46699


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      ++|++.
T Consensus       336 ~~~~l~  341 (402)
T 2aq5_A          336 RFYKLH  341 (402)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-33  Score=232.64  Aligned_cols=234  Identities=13%  Similarity=0.126  Sum_probs=186.1

Q ss_pred             eeeeccCCCccccccc------CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee
Q 037555           28 PAVFTEPPIEDQLAWH------TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM   96 (298)
Q Consensus        28 ~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~   96 (298)
                      ..+.|+ |.+..++++      .+|+.     ...+..| ..+....|++++++|++++.     |+.|++||+.+++..
T Consensus        60 ~~~~~s-~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~  132 (420)
T 3vl1_A           60 KGNTFE-KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTT-----EGDIKVLDSNFNLQR  132 (420)
T ss_dssp             TTCEEE-EEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEET-----TSCEEEECTTSCEEE
T ss_pred             cceeee-ecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEEC-----CCCEEEEeCCCccee
Confidence            456676 456666555      24432     1222333 44555578999999999954     899999999999988


Q ss_pred             eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeE
Q 037555           97 GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTV  176 (298)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (298)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+..       ...+..+..|...|.+++|+|++++|++++.|+.|
T Consensus       133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v  205 (420)
T 3vl1_A          133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-------GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI  205 (420)
T ss_dssp             EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            88889999999999999999999999999999999987       45567778899999999999999999999999999


Q ss_pred             EEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------cCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          177 KIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------------QKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       177 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                      ++||+++++....+.....+...+.+++|.|...                ++++.+|++|+.||.|++||+++.      
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------  279 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------  279 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------
Confidence            9999999887775443334556666666644321                123389999999999999999876      


Q ss_pred             CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555          241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN  297 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~  297 (298)
                             .....+  ...|...|.+++|+|++       . +|++++.||.|++||++
T Consensus       280 -------~~~~~~--~~~~~~~v~~~~~~~~~-------~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          280 -------EQTIQL--PSKFTCSCNSLTVDGNN-------ANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             -------CEEEEE--CCTTSSCEEEEEECSSC-------TTEEEEEETTSEEEEEETT
T ss_pred             -------ceeEEc--ccccCCCceeEEEeCCC-------CCEEEEEeCCCeEEEEEcC
Confidence                   444443  33688999999999998       6 99999999999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=228.75  Aligned_cols=242  Identities=10%  Similarity=0.138  Sum_probs=191.6

Q ss_pred             ccccCCCCCceeeeccCCCccccccc---------CCCCc-----e-EEeccCCCceEEEEEcCC---CCEEEeEeccCC
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH---------TLWPE-----S-HKLYGHGNELFSLCCDHQ---GKLVASSCKAQS   79 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~-----~-~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~   79 (298)
                      ..+.+|.+.|.++.|.|.....++.+         .+|+.     . ....+|..+|++++|+|+   +.+|++++    
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----   87 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD----   87 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE----
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec----
Confidence            34477999999999996554555443         34531     1 223479999999999998   69999995    


Q ss_pred             CCceEEEEEEcCCce-eeeccccccccEEEEE------EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           80 TAAAEIWLWEVGSWK-AMGRLQSHSLTVTQIR------FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                       .|+.|++||+.+++ .+..+.+|...|.++.      |+|++++|++++.||.|++||+....      .....+..|.
T Consensus        88 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~  160 (357)
T 3i2n_A           88 -FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD------DPVANMEPVQ  160 (357)
T ss_dssp             -TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS------SCSEEECCCT
T ss_pred             -CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC------CcceeccccC
Confidence             48999999999887 7888899999999995      46789999999999999999998743      1344444443


Q ss_pred             C----ceEEEE----EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee---ccccCCccEEEEee
Q 037555          153 R----IIWSCS----WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG---LDRQKNHGFLAVGM  221 (298)
Q Consensus       153 ~----~v~~~~----~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~l~~g~  221 (298)
                      .    .+.+++    |+|++++|++++.||.|++||+++.+...    ...+...|.+++|+|   ++     .++++++
T Consensus       161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~v~~~~~~~~~~~~-----~~l~~~~  231 (357)
T 3i2n_A          161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW----ETNIKNGVCSLEFDRKDISM-----NKLVATS  231 (357)
T ss_dssp             TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEESCSSSSC-----CEEEEEE
T ss_pred             CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee----ecCCCCceEEEEcCCCCCCC-----CEEEEEC
Confidence            3    788888    78899999999999999999999887643    234778999999999   66     7999999


Q ss_pred             cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555          222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN  297 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~  297 (298)
                      .||.|++||+++......          .. +..+.+|...|.+++|+|++       . +|++++.||.|++||++
T Consensus       232 ~dg~i~i~d~~~~~~~~~----------~~-~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKG----------FA-SVSEKAHKSTVWQVRHLPQN-------RELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             STTEEEEEEEEEEETTTE----------EE-EEEEECCSSCEEEEEEETTE-------EEEEEEEETTSEEEEEEEE
T ss_pred             CCCeEEEEeCcCCCcccc----------ee-eeccCCCcCCEEEEEECCCC-------CcEEEEEeCCCcEEEeecC
Confidence            999999999998643211          11 11234699999999999998       6 89999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=218.76  Aligned_cols=242  Identities=16%  Similarity=0.181  Sum_probs=204.1

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCC--------CceEEeccCCCceEEEEEcCCC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLW--------PESHKLYGHGNELFSLCCDHQG   68 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~--------~~~~~~~~h~~~v~~~~~s~~~   68 (298)
                      ++.++.++..+++....+..|...|..+.+.| .+..++.+      .+|        .....+.+|...|.+++|  ++
T Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~  114 (313)
T 3odt_A           38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QD  114 (313)
T ss_dssp             TSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ET
T ss_pred             CCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cC
Confidence            56788899999999999999999999999994 55555554      222        236778899999999999  57


Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      .+|++++     .|+.|++||  .++....+..|...+.++.|.| +++++++++.||.|++||..         .....
T Consensus       115 ~~l~~~~-----~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~  178 (313)
T 3odt_A          115 GVVISGS-----WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---------KVIKT  178 (313)
T ss_dssp             TEEEEEE-----TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---------EEEEE
T ss_pred             CEEEEEe-----CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---------ceEEE
Confidence            7999995     499999999  5677788888999999999998 89999999999999999933         34455


Q ss_pred             eec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          148 QEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       148 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      +.. |...+.+++|+|++. +++++.||.|++||+++++.+.   .+..|...|.+++|+|++      .|++++.||.|
T Consensus       179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~------~l~~~~~dg~v  248 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGHESFVYCIKLLPNG------DIVSCGEDRTV  248 (313)
T ss_dssp             ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECTTS------CEEEEETTSEE
T ss_pred             EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcCCceEEEEEEecCC------CEEEEecCCEE
Confidence            555 889999999999988 9999999999999999988776   556788999999999987      48899999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++||++++             +....+   ..|...|.+++|+|++       . +++++.||.|++||++
T Consensus       249 ~iwd~~~~-------------~~~~~~---~~~~~~i~~~~~~~~~-------~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          249 RIWSKENG-------------SLKQVI---TLPAISIWSVDCMSNG-------D-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EEECTTTC-------------CEEEEE---ECSSSCEEEEEECTTS-------C-EEEEETTSCEEEEESC
T ss_pred             EEEECCCC-------------ceeEEE---eccCceEEEEEEccCC-------C-EEEEeCCCcEEEEeCC
Confidence            99999876             444443   3588899999999998       6 6679999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=223.19  Aligned_cols=210  Identities=17%  Similarity=0.279  Sum_probs=180.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ....+.+|.+.|++++|+|++++|++++     .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            4567889999999999999999999995     48999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeee--------ecC
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQIL--------ALP  194 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~--------~~~  194 (298)
                      ++||+..       ...+..+. +...|.+++|+|++++|++++.+     +.|++||++.......+.        .+.
T Consensus        99 ~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B           99 KLWDVSN-------GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             EEEETTT-------CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             EEEECCC-------CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence            9999987       44555555 78899999999999999999998     999999998765322111        222


Q ss_pred             CCCC--ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          195 PFNS--SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       195 ~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      .+..  .+.+++|+|++     .+|++++.||.|++||+++..            .....   +..|...|.+++|+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~------------~~~~~---~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          171 THEGLDAATVAGWSTKG-----KYIIAGHKDGKISKYDVSNNY------------EYVDS---IDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             CCTTCCCEEEEEECGGG-----CEEEEEETTSEEEEEETTTTT------------EEEEE---EECCSSCEEEEEECTTS
T ss_pred             CCcCccceeEEEEcCCC-----CEEEEEcCCCEEEEEECCCCc------------EeEEE---EecCCCceeEEEECCCC
Confidence            3333  89999999998     799999999999999998631            34444   33588999999999999


Q ss_pred             CCCCCcceEEEeeeCCCcEEEeEec
Q 037555          273 KPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             .+|++++.|+.|++||++
T Consensus       231 -------~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          231 -------TYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             -------SEEEEEETTSEEEEEETT
T ss_pred             -------CEEEEecCCceEEEEECC
Confidence                   899999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-33  Score=247.23  Aligned_cols=219  Identities=20%  Similarity=0.314  Sum_probs=179.5

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEcCC--CCEEEEEeCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRD  124 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  124 (298)
                      +..+.+|.++|++++|+|++++|++|+.     ||.|++||+.  +++.+..+.+|...|.+++|+|+  +++|++++.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~-----dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEET-----TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEEC-----CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            3567899999999999999999999954     9999999997  56777888999999999999987  8999999999


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      |.|++||+....     ......+..|...|.+++|+|+  ++.+++++.||.|++||+++....... .+..|...|.+
T Consensus        77 g~I~vwd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~  150 (753)
T 3jro_A           77 GKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNS  150 (753)
T ss_dssp             SCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEE
T ss_pred             CeEEEEECCCCc-----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEE
Confidence            999999998732     3366777889999999999999  999999999999999999987443322 44568899999


Q ss_pred             EEEeeccc--------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC---
Q 037555          203 LSWVGLDR--------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH---  271 (298)
Q Consensus       203 ~~~~~~~~--------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  271 (298)
                      ++|+|...        .+++.++++|+.||.|++||+++...            .......+.+|...|.+++|+|+   
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------TYVLESTLEGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT------------EEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc------------cceeeeeecCCCCcEEEEEeccCCCC
Confidence            99999410        00127999999999999999987631            11222235579999999999999   


Q ss_pred             CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          272 EKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +       .+|++++.||.|++||++
T Consensus       219 ~-------~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          219 R-------SYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             S-------EEEEEEESSSCEEEEEES
T ss_pred             C-------CEEEEEecCCEEEEecCC
Confidence            7       899999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-32  Score=229.54  Aligned_cols=252  Identities=20%  Similarity=0.305  Sum_probs=205.4

Q ss_pred             ccccceeeeecCcccccc--cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555            3 AATRETVERHGNDGLDTL--ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      +..++.|+..+|+.+..+  .+|.+.|.++.|. |.+..++++      .+|+     .+..+.+|...|.+++++  +.
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~  200 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY  200 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC
Confidence            456788999999987665  4777889999999 567777766      4564     478889999999999885  57


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ  148 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (298)
                      +|++|+     .|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+.......   ...+...
T Consensus       201 ~l~sgs-----~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~---~~~~~~~  272 (420)
T 4gga_A          201 ILSSGS-----RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTF  272 (420)
T ss_dssp             EEEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC---SCCSEEE
T ss_pred             EEEEEe-----CCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc---ceeeeee
Confidence            899995     4899999998764 445678899999999999999999999999999999999865432   2335566


Q ss_pred             eccCCceEEEEEccCC-CEEEE--eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee--cC
Q 037555          149 EAHKRIIWSCSWNPFG-HEFAT--GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM--ES  223 (298)
Q Consensus       149 ~~~~~~v~~~~~~~~~-~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~--~d  223 (298)
                      ..|...|.+++|+|.+ ..+++  |+.|+.|++||++++....   .+. ....+.++.|+|++     ..+++++  .|
T Consensus       273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~---~~~-~~~~v~~~~~~~~~-----~~lv~~sg~~d  343 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---AVD-AHSQVCSILWSPHY-----KELISGHGFAQ  343 (420)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE---EEE-CSSCEEEEEEETTT-----TEEEEEECTTT
T ss_pred             cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce---eec-cccceeeeeecCCC-----CeEEEEEecCC
Confidence            7789999999999965 55555  4579999999999988776   333 45678999999988     5666544  78


Q ss_pred             CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.|+|||+.+.             .++..   +.+|...|++++|+|++       .+|+||+.|++|+|||+.
T Consensus       344 ~~I~iwd~~~~-------------~~v~~---l~gH~~~V~~l~~spdg-------~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          344 NQLVIWKYPTM-------------AKVAE---LKGHTSRVLSLTMSPDG-------ATVASAAADETLRLWRCF  394 (420)
T ss_dssp             CCEEEEETTTC-------------CEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTTEEEEECCS
T ss_pred             CEEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEecCCeEEEEECC
Confidence            99999999876             55555   45799999999999999       899999999999999973

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.3e-33  Score=229.55  Aligned_cols=208  Identities=18%  Similarity=0.281  Sum_probs=175.9

Q ss_pred             eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCC-CEEE
Q 037555           49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDD-NLLL  119 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~  119 (298)
                      +..+.+|.+.|++++|+| ++.+|++++     .|+.|++|++.++       +.+..+.+|...|.+++|+|++ ++|+
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  148 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL  148 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEE
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEE
Confidence            455779999999999999 999999995     4999999999887       5667788999999999999998 6999


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CCC
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PPF  196 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~  196 (298)
                      +++.||.|++||+..       ...+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+.   .+ ..|
T Consensus       149 s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~  218 (402)
T 2aq5_A          149 SAGCDNVILVWDVGT-------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPH  218 (402)
T ss_dssp             EEETTSCEEEEETTT-------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSS
T ss_pred             EEcCCCEEEEEECCC-------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCC
Confidence            999999999999987       5566777  7899999999999999999999999999999999987766   44 456


Q ss_pred             CCc-eEEEEEeeccccCCccEEEEe---ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          197 NSS-VTALSWVGLDRQKNHGFLAVG---MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       197 ~~~-v~~~~~~~~~~~~~~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      ... +.+++|+|++     .+|++|   +.|+.|++||+++....            ....  ...|...|.+++|+|++
T Consensus       219 ~~~~~~~~~~~~~~-----~~l~~g~~~~~d~~i~iwd~~~~~~~------------~~~~--~~~~~~~v~~~~~s~~~  279 (402)
T 2aq5_A          219 EGTRPVHAVFVSEG-----KILTTGFSRMSERQVALWDTKHLEEP------------LSLQ--ELDTSSGVLLPFFDPDT  279 (402)
T ss_dssp             CSSSCCEEEECSTT-----EEEEEEECTTCCEEEEEEETTBCSSC------------SEEE--ECCCCSSCEEEEEETTT
T ss_pred             CCCcceEEEEcCCC-----cEEEEeccCCCCceEEEEcCccccCC------------ceEE--eccCCCceeEEEEcCCC
Confidence            554 8999999988     789998   78999999999876321            1111  11366789999999999


Q ss_pred             CCCCCcceEEE-eeeCCCcEEEeEec
Q 037555          273 KPKNSRTMQLA-SCGADNTVRVFQVN  297 (298)
Q Consensus       273 ~~~~~~~~~l~-s~~~d~~i~iw~~~  297 (298)
                             .+|+ +++.|+.|++||++
T Consensus       280 -------~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          280 -------NIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             -------TEEEEEETTCSCEEEEEEC
T ss_pred             -------CEEEEEEcCCCeEEEEEec
Confidence                   6665 56679999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.6e-33  Score=218.99  Aligned_cols=251  Identities=14%  Similarity=0.133  Sum_probs=179.2

Q ss_pred             ccccceeeeecC---cccccccCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcCC----CCEEEeEe
Q 037555            3 AATRETVERHGN---DGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQ----GKLVASSC   75 (298)
Q Consensus         3 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~~~~   75 (298)
                      +...+.++...+   +.++++..|..+|..+.+.|..- .+.-..+-      .-+...|.+++|+|+    ++.+++++
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~------~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY-NLVCVALG------NLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC-SCEEEEEC------SSSEEEEEEECC------CCEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc-ceeeeeec------cccccceEEEEECCCccccccEEEeCC
Confidence            345677788888   88999999999999999885332 22211111      114456777777777    66666654


Q ss_pred             ccC---------------CCCceEEEEEEc-CCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEEEEEeccCC
Q 037555           76 KAQ---------------STAAAEIWLWEV-GSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        76 ~~~---------------~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      .+.               .+.|+.|++|++ .+++.+..+.+|...+..++|++   ++.+|++++.|++|+|||+.+  
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--  212 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--  212 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--
Confidence            210               134888889988 44777777778888888888888   678999999999999999998  


Q ss_pred             CCccceeeeEEeeccC---CceEEEEEccCCCEE------------EEeeCCCeEEEEEccCCcceeeee-ec-CCCCCc
Q 037555          137 TGEIDYQLIARQEAHK---RIIWSCSWNPFGHEF------------ATGSRDKTVKIWAVENKSSVKQIL-AL-PPFNSS  199 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~~wd~~~~~~~~~~~-~~-~~~~~~  199 (298)
                           .+.++.+..|.   ..+.+++|+|++.++            ++|+.|++|++||..+++.+..+. .+ .+|...
T Consensus       213 -----Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~  287 (356)
T 2w18_A          213 -----GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR  287 (356)
T ss_dssp             -----CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred             -----CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence                 56677776543   367788999999876            567889999999999887665221 11 245444


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSR  278 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~  278 (298)
                      +.+..++  +     .++++|+.|++|+|||+.++             +++..+   .+|...+. .++|+|++      
T Consensus       288 ~lsg~~s--g-----~~lASgS~DgTIkIWDl~tG-------------k~l~tL---~gH~~~vvs~vafSPDG------  338 (356)
T 2w18_A          288 FLEGDVK--D-----HCAAAILTSGTIAIWDLLLG-------------QCTALL---PPVSDQHWSFVKWSGTD------  338 (356)
T ss_dssp             EEEEEEE--T-----TEEEEEETTSCEEEEETTTC-------------SEEEEE---CCC--CCCCEEEECSSS------
T ss_pred             eEccccC--C-----CEEEEEcCCCcEEEEECCCC-------------cEEEEe---cCCCCCeEEEEEECCCC------
Confidence            4433333  4     68999999999999999987             666654   46776555 68999999      


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                       .+|++|+.|++|||||+.
T Consensus       339 -~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          339 -SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             -SEEEEECTTSCEEEEEEC
T ss_pred             -CEEEEEECCCcEEEecCC
Confidence             899999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-32  Score=230.85  Aligned_cols=244  Identities=18%  Similarity=0.260  Sum_probs=206.5

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEc--CCCC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCD--HQGK   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s--~~~~   69 (298)
                      ++.++.++..+++.+..+.+|.+.|.++.+.+. + .++++      .+|+     .+..+.+|...|.+++|+  +++.
T Consensus       141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  218 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  218 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE
T ss_pred             CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC
Confidence            567888999999999999999999999999843 3 45444      4564     477888999999999998  5788


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCcee-----------------------eeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKA-----------------------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      +|++++.     |+.|++||+.++..                       +..+.+|...|.++  +++++++++++.||.
T Consensus       219 ~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~  291 (464)
T 3v7d_B          219 YIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT  291 (464)
T ss_dssp             EEEEEET-----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred             EEEEEcC-----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence            9999954     89999999987653                       34566788888877  567899999999999


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      |++||+..       ...+..+..|...|.+++|+|+++++++++.||.|++||+++++.+.   .+.+|...|.+++|+
T Consensus       292 i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~  361 (464)
T 3v7d_B          292 LIVWDVAQ-------MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY---TLQGHTALVGLLRLS  361 (464)
T ss_dssp             EEEEETTT-------TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEC
T ss_pred             EEEEECCC-------CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EEeCCCCcEEEEEEc
Confidence            99999987       66778888999999999999999999999999999999999988776   677899999999998


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                      +       .+|++++.||.|++||+++.             ......    .|...+..++|++++       .+|++++
T Consensus       362 ~-------~~l~s~s~dg~v~vwd~~~~-------------~~~~~~----~~~~~~~~~~~~~~~-------~~l~~~~  410 (464)
T 3v7d_B          362 D-------KFLVSAAADGSIRGWDANDY-------------SRKFSY----HHTNLSAITTFYVSD-------NILVSGS  410 (464)
T ss_dssp             S-------SEEEEEETTSEEEEEETTTC-------------CEEEEE----ECTTCCCEEEEEECS-------SEEEEEE
T ss_pred             C-------CEEEEEeCCCcEEEEECCCC-------------ceeeee----cCCCCccEEEEEeCC-------CEEEEec
Confidence            4       68999999999999999865             333332    256678889999999       8999988


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                       |+.|++||++
T Consensus       411 -dg~i~iwd~~  420 (464)
T 3v7d_B          411 -ENQFNIYNLR  420 (464)
T ss_dssp             -TTEEEEEETT
T ss_pred             -CCeEEEEECC
Confidence             9999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-32  Score=225.84  Aligned_cols=239  Identities=18%  Similarity=0.260  Sum_probs=194.7

Q ss_pred             ccCCCCCceeeeccCCCcc-ccccc------CCCCc---------------eEEecc----------CCCceEEEEEcCC
Q 037555           20 LESVPDAVPAVFTEPPIED-QLAWH------TLWPE---------------SHKLYG----------HGNELFSLCCDHQ   67 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~-~~~~~------~~~~~---------------~~~~~~----------h~~~v~~~~~s~~   67 (298)
                      ...|.+.|.++.+.| .+. .++++      .+|+.               ...+..          |.+.|++++|+|+
T Consensus        41 ~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            345568999999994 455 66654      45544               222333          6779999999999


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------  140 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------  140 (298)
                      +++|++++.     |+.|++|+ .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+........       
T Consensus       120 ~~~l~~~~~-----dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (425)
T 1r5m_A          120 GNSIVTGVE-----NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG  193 (425)
T ss_dssp             SSEEEEEET-----TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             CCEEEEEeC-----CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence            999999954     89999999 56788888899999999999999999999999999999999875321000       


Q ss_pred             ------------------------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555          141 ------------------------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI  178 (298)
Q Consensus       141 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  178 (298)
                                                                .......+..|...|.+++|+|++++|++++.|+.|++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                                                      01122345578889999999999999999999999999


Q ss_pred             EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555          179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC  258 (298)
Q Consensus       179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      ||+++.+...   .+..|...|.+++|+|++      ++++++.|+.|++||+++.             ..+..+   ..
T Consensus       274 ~d~~~~~~~~---~~~~~~~~i~~~~~~~~~------~l~~~~~d~~i~i~d~~~~-------------~~~~~~---~~  328 (425)
T 1r5m_A          274 WHGGNGNSQN---CFYGHSQSIVSASWVGDD------KVISCSMDGSVRLWSLKQN-------------TLLALS---IV  328 (425)
T ss_dssp             ECSSSBSCSE---EECCCSSCEEEEEEETTT------EEEEEETTSEEEEEETTTT-------------EEEEEE---EC
T ss_pred             EECCCCccce---EecCCCccEEEEEECCCC------EEEEEeCCCcEEEEECCCC-------------cEeEec---cc
Confidence            9999887776   566788999999999975      8999999999999999876             444443   35


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |...|.+++|+|++       .+|++++.||.|++||++
T Consensus       329 ~~~~i~~~~~s~~~-------~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          329 DGVPIFAGRISQDG-------QKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             TTCCEEEEEECTTS-------SEEEEEETTSCEEEEECH
T ss_pred             CCccEEEEEEcCCC-------CEEEEEECCCeEEEEECC
Confidence            88899999999999       899999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3e-32  Score=255.60  Aligned_cols=241  Identities=17%  Similarity=0.279  Sum_probs=205.8

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE   84 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~   84 (298)
                      ....+.+|.+.|.++.|+ |.+..++++      .+|+     .+..+.+|...|++++|+|++++|++++.     |+.
T Consensus       607 ~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~  680 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFS-QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-----DKK  680 (1249)
T ss_dssp             CSEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSE
T ss_pred             ceEEEecccccEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-----CCe
Confidence            345667999999999999 566677665      3553     47888999999999999999999999954     899


Q ss_pred             EEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      |++||+.+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+..       ......+.+|...|.+++|+|
T Consensus       681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-------~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-------KECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-------SSEEEEECCCSSCEEEEEECS
T ss_pred             EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-------cchhheecCCCCCEEEEEEec
Confidence            99999999999999999999999999999  556899999999999999987       556778889999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeee--------------------------------------------------
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILA--------------------------------------------------  192 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------------------------------------------------  192 (298)
                      ++++|++++.||.|++||++++.....+..                                                  
T Consensus       754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~  833 (1249)
T 3sfz_A          754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA  833 (1249)
T ss_dssp             STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence            999999999999999999987654332210                                                  


Q ss_pred             --cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          193 --LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       193 --~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                        ..+|...+.+++|+|++     .++++++.|+.|++||+.++             .....   +.+|...|.+++|+|
T Consensus       834 ~~~~~~~~~v~~~~~sp~~-----~~l~~~~~dg~v~vwd~~~~-------------~~~~~---~~~h~~~v~~v~~sp  892 (1249)
T 3sfz_A          834 EIHTGHHSTIQYCDFSPYD-----HLAVIALSQYCVELWNIDSR-------------LKVAD---CRGHLSWVHGVMFSP  892 (1249)
T ss_dssp             EEECSSSSCCCEEEECSST-----TEEEEECSSSCEEEEETTTT-------------EEEEE---ECCCSSCEEEEEECT
T ss_pred             EEcCCCCCceEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCC-------------ceeee---cCCCccceEEEEECC
Confidence              11466778899999988     79999999999999999876             44444   447999999999999


Q ss_pred             CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          271 HEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++       .+|++++.|+.|++|++.
T Consensus       893 dg-------~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          893 DG-------SSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             TS-------SEEEEEETTSCEEEEEHH
T ss_pred             CC-------CEEEEEeCCCeEEEEEcc
Confidence            99       899999999999999963

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=229.38  Aligned_cols=240  Identities=10%  Similarity=0.039  Sum_probs=182.6

Q ss_pred             CcccccccCCCCCceeeeccCCCcccccccCCCC--ceEEec-cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP--ESHKLY-GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV   90 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~   90 (298)
                      ++....+++|+..|..+.|.|. + ..-...+|.  ....+. +|...|.+++|||+|+.||+++.     ||.|++|+.
T Consensus        42 ~~~~~~l~gh~~~v~~V~FsPd-g-~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~-----dg~V~iwd~  114 (588)
T 2j04_A           42 PKYAKDINCNSKNLFHVKEFPL-E-FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN-----NGNVSVFKD  114 (588)
T ss_dssp             ECCCSCCSSBGGGTEEEEEECC-C-CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET-----TSCEEEEET
T ss_pred             ccccceecCCCccEEEEEECCC-C-CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeC
Confidence            4445566899999999999954 4 122223332  122333 56888999999999999999954     999999996


Q ss_pred             CCceeeeccccccc-----cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe----eccCCceEEEEEc
Q 037555           91 GSWKAMGRLQSHSL-----TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ----EAHKRIIWSCSWN  161 (298)
Q Consensus        91 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~  161 (298)
                      +.  .+..+. |..     .|.+++|+|||++|++|+.||+|++||+..........-.+..+    .+|...|.+++|+
T Consensus       115 ~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS  191 (588)
T 2j04_A          115 NK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY  191 (588)
T ss_dssp             TE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred             Cc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence            54  555566 665     49999999999999999999999999998742111001134554    5677899999999


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS  240 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~  240 (298)
                      |++  +++++.|+.|++||+...........+ .+|...|.+++|+  +     ..|++++ ++.|++||+..+      
T Consensus       192 Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-----~~LASa~-~~tIkLWd~~~~------  255 (588)
T 2j04_A          192 EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-----YKVVLTC-PGYVHKIDLKNY------  255 (588)
T ss_dssp             TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-----TEEEEEC-SSEEEEEETTTT------
T ss_pred             CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-----CEEEEEe-CCeEEEEECCCC------
Confidence            998  888999999999999887642111134 3677899999999  4     5888887 699999999865      


Q ss_pred             CCCCCCcceeeeeccCCcccceEEEEEe--ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          241 TPAPSTANIIIRFDPFACHVAAVNRMAW--KTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             ... .+. . +|...|.++.|  +|++       ..|++++.||+ ++|.++
T Consensus       256 -------~~~-~~~-~-gh~~~V~~va~~~s~d~-------~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          256 -------SIS-SLK-T-GSLENFHIIPLNHEKES-------TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -------EEE-EEE-C-SCCSCCCEEEETTCSSC-------EEEEECSSCEE-EEEESS
T ss_pred             -------eEE-EEE-c-CCCceEEEEEeeeCCCC-------CEEEEEcCCCC-EEEeec
Confidence                   221 111 2 69999999999  9999       89999999999 999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-32  Score=224.54  Aligned_cols=200  Identities=19%  Similarity=0.346  Sum_probs=175.0

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .|...|++++|+|++++|++++.     |+.|++||+.+++.+..+.+|...|.+++|  +++++++++.||.|++||++
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLG-----NGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEET-----TSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECC-----CCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            38899999999999999999954     899999999999999999999999999999  56799999999999999998


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ..      ......+..|...|.+++|+|++++|++++.|+.|++||+++.+...   .+..|...|.+++|+|++.   
T Consensus       205 ~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~p~~~---  272 (401)
T 4aez_A          205 IA------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWCPWQS---  272 (401)
T ss_dssp             SS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EECCCSSCCCEEEECTTST---
T ss_pred             cC------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---EecCCcceEEEEEECCCCC---
Confidence            53      34567778899999999999999999999999999999999887766   5667899999999999874   


Q ss_pred             ccEEEEee--cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe--eeCCC
Q 037555          214 HGFLAVGM--ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS--CGADN  289 (298)
Q Consensus       214 ~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s--~~~d~  289 (298)
                       .++++++  .|+.|++||++++             .....+.    +...|.+++|+|++       .+|++  ++.||
T Consensus       273 -~ll~~~~gs~d~~i~i~d~~~~-------------~~~~~~~----~~~~v~~~~~s~~~-------~~l~~~~g~~dg  327 (401)
T 4aez_A          273 -NLLATGGGTMDKQIHFWNAATG-------------ARVNTVD----AGSQVTSLIWSPHS-------KEIMSTHGFPDN  327 (401)
T ss_dssp             -TEEEEECCTTTCEEEEEETTTC-------------CEEEEEE----CSSCEEEEEECSSS-------SEEEEEECTTTC
T ss_pred             -CEEEEecCCCCCEEEEEECCCC-------------CEEEEEe----CCCcEEEEEECCCC-------CeEEEEeecCCC
Confidence             6777765  7999999999876             5555543    56789999999999       78888  44899


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      .|++||++
T Consensus       328 ~i~v~~~~  335 (401)
T 4aez_A          328 NLSIWSYS  335 (401)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEecC
Confidence            99999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=229.21  Aligned_cols=232  Identities=14%  Similarity=0.172  Sum_probs=175.7

Q ss_pred             CCcccccccCCCC----ceEEe-ccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC---ceeee-ccc-ccc
Q 037555           35 PIEDQLAWHTLWP----ESHKL-YGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS---WKAMG-RLQ-SHS  103 (298)
Q Consensus        35 ~~~~~~~~~~~~~----~~~~~-~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~-~~~-~~~  103 (298)
                      |.+..++....|+    .+..+ .+|.+.|++++|+| ++++|++|+     .|+.|++||+.+   +.... .+. .|.
T Consensus        37 ~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~h~  111 (437)
T 3gre_A           37 PIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYDCS  111 (437)
T ss_dssp             CCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEECS
T ss_pred             CccccccccccccccceEEeeeccCCCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeeccCC
Confidence            4444454444563    46777 88999999999999 999999995     499999999976   33221 222 589


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----ceeeeEEee--c--cCCceEEEE--EccCCCEEEEeeCC
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI----DYQLIARQE--A--HKRIIWSCS--WNPFGHEFATGSRD  173 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~--~--~~~~v~~~~--~~~~~~~l~~~~~d  173 (298)
                      ..|.+++|+|++++|++++.||.|++||+.....+..    ....+..+.  .  +...+.++.  +++++.+|++++.|
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            9999999999999999999999999999962111100    011112221  1  445666666  55789999999999


Q ss_pred             CeEEEEEccCCcceeeeeecCC--CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555          174 KTVKIWAVENKSSVKQILALPP--FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII  251 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  251 (298)
                      +.|++||+++.+.+.   .+..  |...|++++|+|++     .+|++|+.||.|++||++++             ..+.
T Consensus       192 ~~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~~s~~~-----~~l~s~~~dg~i~iwd~~~~-------------~~~~  250 (437)
T 3gre_A          192 SRVIIFDIRTLERLQ---IIENSPRHGAVSSICIDEEC-----CVLILGTTRGIIDIWDIRFN-------------VLIR  250 (437)
T ss_dssp             SEEEEEETTTCCEEE---EEECCGGGCCEEEEEECTTS-----CEEEEEETTSCEEEEETTTT-------------EEEE
T ss_pred             CeEEEEeCCCCeeeE---EEccCCCCCceEEEEECCCC-----CEEEEEcCCCeEEEEEcCCc-------------cEEE
Confidence            999999999988777   4434  78899999999998     79999999999999999876             5555


Q ss_pred             eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+.  ..|...|.+++|+|..   .+++.+|++++.|+.|++||++
T Consensus       251 ~~~--~~~~~~v~~~~~~~~~---s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          251 SWS--FGDHAPITHVEVCQFY---GKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             EEB--CTTCEEEEEEEECTTT---CTTEEEEEEESTTEEEEEEETT
T ss_pred             EEe--cCCCCceEEEEecccc---CCCccEEEEEcCCCcEEEEEcC
Confidence            543  1477899999666542   0112799999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.1e-33  Score=232.47  Aligned_cols=231  Identities=14%  Similarity=0.231  Sum_probs=183.6

Q ss_pred             CCCCCceeeeccCCCccccccc------CCCC----------------ceEEeccCC------------CceEEEEEcCC
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH------TLWP----------------ESHKLYGHG------------NELFSLCCDHQ   67 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~----------------~~~~~~~h~------------~~v~~~~~s~~   67 (298)
                      .+.+.|.++.|+ |.+..++++      .+|+                ....+.+|.            ..|++++|+|+
T Consensus        26 ~~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            456789999999 567777765      3553                366788998            88999999999


Q ss_pred             C--CEEEeEeccCCCCceEEEEEEcCCceee---------------------------------------ec-ccccccc
Q 037555           68 G--KLVASSCKAQSTAAAEIWLWEVGSWKAM---------------------------------------GR-LQSHSLT  105 (298)
Q Consensus        68 ~--~~l~~~~~~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~~~~  105 (298)
                      +  ..|++++     .|+.|++|++.+++..                                       .. ..+|...
T Consensus       105 ~~~~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          105 KNAAQFLLST-----NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CSSSEEEEEE-----CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCcceEEEeC-----CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            8  7899995     4999999999764432                                       12 3579999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-------EeeccCCceEEEEEccCC-CEEEEeeCCCeEE
Q 037555          106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-------RQEAHKRIIWSCSWNPFG-HEFATGSRDKTVK  177 (298)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~  177 (298)
                      |.+++|+|++++|+++ .|+.|++||++..      .....       .+..|...|.+++|+|++ ++|++++.||.|+
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEIT------DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEE------EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCC------CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            9999999999999998 7999999999842      22222       355789999999999998 9999999999999


Q ss_pred             EEEccCCcc----eeeeeecCCCCC------------ceEEEEEeeccccCCccEEEEeecCCcEEEEEeee-ccccccc
Q 037555          178 IWAVENKSS----VKQILALPPFNS------------SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV-NRTNDVS  240 (298)
Q Consensus       178 ~wd~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~  240 (298)
                      +||+++.+.    ..   .+..+..            .|.+++|+|++     .+|++++. +.|++||++. +      
T Consensus       253 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~~-~~v~iwd~~~~~------  317 (447)
T 3dw8_B          253 LCDMRASALCDRHSK---LFEEPEDPSNRSFFSEIISSISDVKFSHSG-----RYMMTRDY-LSVKVWDLNMEN------  317 (447)
T ss_dssp             EEETTTCSSSCTTCE---EECCC-----CCHHHHHTTCEEEEEECTTS-----SEEEEEES-SEEEEEETTCCS------
T ss_pred             EEECcCCccccceee---EeccCCCccccccccccCceEEEEEECCCC-----CEEEEeeC-CeEEEEeCCCCc------
Confidence            999998775    33   4555654            89999999998     79999998 9999999986 4      


Q ss_pred             CCCCCCcceeeeeccCCcccc---------------eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          241 TPAPSTANIIIRFDPFACHVA---------------AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                             .++..+   .+|..               .+..++|+|++       .+|++++.||.|++||++
T Consensus       318 -------~~~~~~---~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-------~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          318 -------RPVETY---QVHEYLRSKLCSLYENDCIFDKFECCWNGSD-------SVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             -------SCSCCE---ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-------SEEEEECSTTEEEEEETT
T ss_pred             -------ccccee---eccccccccccccccccccccceEEEECCCC-------CEEEEeccCCEEEEEEcC
Confidence                   222222   23432               13359999999       899999999999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-32  Score=228.97  Aligned_cols=218  Identities=19%  Similarity=0.319  Sum_probs=179.0

Q ss_pred             EEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCC----------ceeeeccccccccEEEEEEcCCCC-E
Q 037555           50 HKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGS----------WKAMGRLQSHSLTVTQIRFSHDDN-L  117 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~  117 (298)
                      ....+|.+.|++++|+|+ +.+|+++     +.+|.|++|++.+          .+.+..+.+|...|.+++|+|++. +
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~-----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATK-----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEE-----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEE-----CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            455689999999999997 6788888     4589999999986          566777889999999999999988 9


Q ss_pred             EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555          118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPF  196 (298)
Q Consensus       118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  196 (298)
                      |++++.||.|++|++...............+..|...|.+++|+| ++.+|++++.||.|++||+++......+..+..|
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            999999999999999874322211233456678999999999999 6789999999999999999987422222245578


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  276 (298)
                      ...|++++|+|++.    .++++|+.||.|++||++...            ..+..   +..|...|.+++|+|+++   
T Consensus       277 ~~~v~~i~~~p~~~----~~l~tg~~dg~v~vwd~~~~~------------~~~~~---~~~h~~~v~~i~~sp~~~---  334 (430)
T 2xyi_A          277 TAEVNCLSFNPYSE----FILATGSADKTVALWDLRNLK------------LKLHS---FESHKDEIFQVQWSPHNE---  334 (430)
T ss_dssp             SSCEEEEEECSSCT----TEEEEEETTSEEEEEETTCTT------------SCSEE---EECCSSCEEEEEECSSCT---
T ss_pred             CCCeEEEEeCCCCC----CEEEEEeCCCeEEEEeCCCCC------------CCeEE---eecCCCCEEEEEECCCCC---
Confidence            89999999999883    579999999999999998742            23333   335899999999999983   


Q ss_pred             CcceEEEeeeCCCcEEEeEec
Q 037555          277 SRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       277 ~~~~~l~s~~~d~~i~iw~~~  297 (298)
                         .+|++++.|+.|++||++
T Consensus       335 ---~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          335 ---TILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             ---TEEEEEETTSCCEEEEGG
T ss_pred             ---CEEEEEeCCCcEEEEeCC
Confidence               579999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-31  Score=226.61  Aligned_cols=238  Identities=16%  Similarity=0.264  Sum_probs=196.4

Q ss_pred             ccccccCCCCCc-eeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           16 GLDTLESVPDAV-PAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        16 ~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      ....+.+|.+.+ .++.+.   +..++++      ++|+     .+..+.+|.+.|++++|+|++ .|++|+     .|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s-----~dg  183 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS-----TDR  183 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE-----TTS
T ss_pred             ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe-----CCC
Confidence            455788998886 555554   3455554      3553     577888999999999999988 888885     499


Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEc--CCCCEEEEEeCCCeEEEEEeccCCCCccc----------------eeee
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFS--HDDNLLLSVSRDRQFSVFAIQRTGTGEID----------------YQLI  145 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~  145 (298)
                      .|++||+++++.+..+.+|...|.+++|+  ++++++++++.||.|++||+.........                ....
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            99999999999999999999999999998  57789999999999999999865422110                0125


Q ss_pred             EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555          146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV  225 (298)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~  225 (298)
                      ..+.+|...|.++  +++++++++++.||.|++||+++.+.+.   .+.+|...|.+++|+|++     .++++|+.||.
T Consensus       264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~sg~~dg~  333 (464)
T 3v7d_B          264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHER-----KRCISASMDTT  333 (464)
T ss_dssp             EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTT-----TEEEEEETTSC
T ss_pred             EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCC-----CEEEEEeCCCc
Confidence            5667788888876  5678999999999999999999888776   667799999999999998     79999999999


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |++||++++             ..+..   +.+|...|.+++|++         .+|++++.||.|++||++
T Consensus       334 i~vwd~~~~-------------~~~~~---~~~h~~~v~~~~~~~---------~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          334 IRIWDLENG-------------ELMYT---LQGHTALVGLLRLSD---------KFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             EEEEETTTT-------------EEEEE---ECCCSSCEEEEEECS---------SEEEEEETTSEEEEEETT
T ss_pred             EEEEECCCC-------------cEEEE---EeCCCCcEEEEEEcC---------CEEEEEeCCCcEEEEECC
Confidence            999999876             55555   446999999999973         699999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-32  Score=244.00  Aligned_cols=207  Identities=13%  Similarity=0.211  Sum_probs=172.0

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      ...+|...|++++|+|++++||+|+.     |+.|+||+..+.+....+. |...|.+++|+| +++|++++.|+.|++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~-----Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATV-----TGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEET-----TSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeC-----CCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence            34589999999999999999999954     8999999998777665554 788999999999 8899999999999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-ee-------eecCCCCCceEE
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QI-------LALPPFNSSVTA  202 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~-------~~~~~~~~~v~~  202 (298)
                      |+..       ...+..+. |...|++++|+|++++|++|+.||.|++||+++.+... .+       ..+.+|...|.+
T Consensus        85 d~~~-------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           85 SLYS-------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             ETTT-------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred             ECCC-------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence            9987       34455554 67889999999999999999999999999999876431 00       134678899999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec---------------cCCcccceEEEEE
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD---------------PFACHVAAVNRMA  267 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~  267 (298)
                      ++|+|++.    ..+++|+.|+.| +||+++.+             ....+.               ....|...|++++
T Consensus       157 l~~sp~~~----~~l~~g~~dg~v-lWd~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          157 IQWNPRDI----GTVLISYEYVTL-TYSLVENE-------------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             EEEETTEE----EEEEEECSSCEE-EEETTTTE-------------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             EEEccCCC----CEEEEEeCCCcE-EEECCCCc-------------eEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence            99999642    689999999999 99998763             332222               1234568899999


Q ss_pred             eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |+|++       .+|++++.|++|++||++
T Consensus       219 fspdg-------~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          219 YHPNS-------LHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             ECTTS-------SEEEEEETTCCEEEEETT
T ss_pred             EcCCC-------CEEEEEECCCeEEEEECC
Confidence            99999       899999999999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.5e-31  Score=222.93  Aligned_cols=242  Identities=18%  Similarity=0.323  Sum_probs=208.2

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ++.++.++..+++.+..+.+|...|.++.+.   +..++++      .+|+     .+..+.+|...|.++.|+  +..|
T Consensus       138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l  212 (445)
T 2ovr_B          138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRV  212 (445)
T ss_dssp             TSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEE
Confidence            5678889999999999999999999999887   3344444      3553     467888999999999996  5679


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++++     .|+.|++||+.+++.+..+.+|...|.++.|  +++++++++.||.|++||++.       ...+..+..|
T Consensus       213 ~s~s-----~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~  278 (445)
T 2ovr_B          213 VSGS-----RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-------ETCLHTLQGH  278 (445)
T ss_dssp             EEEE-----TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-------TEEEEEECCC
T ss_pred             EEEe-----CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-------CcEeEEecCC
Confidence            9995     4999999999999999999999999999999  788999999999999999987       5677888889


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      ...|.++.|  ++.++++++.||.|++||+++++...   .+..|...+.++.+.+       .++++|+.||.|++||+
T Consensus       279 ~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~vwd~  346 (445)
T 2ovr_B          279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKD-------NILVSGNADSTVKIWDI  346 (445)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCCCSCEEEEEEET-------TEEEEEETTSCEEEEET
T ss_pred             CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCCcccEEEEEEeC-------CEEEEEeCCCeEEEEEC
Confidence            999999999  78899999999999999999988776   6667888888888754       68999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +++             ..+..+.....|...|.+++|+  +       .+|++++.||.|++||++
T Consensus       347 ~~~-------------~~~~~~~~~~~~~~~v~~~~~~--~-------~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          347 KTG-------------QCLQTLQGPNKHQSAVTCLQFN--K-------NFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             TTC-------------CEEEEECSTTSCSSCEEEEEEC--S-------SEEEEEETTSEEEEEETT
T ss_pred             CCC-------------cEEEEEccCCCCCCCEEEEEEC--C-------CEEEEEeCCCeEEEEECC
Confidence            876             5566655445688999999996  3       699999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.8e-32  Score=225.93  Aligned_cols=249  Identities=18%  Similarity=0.331  Sum_probs=204.3

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      .++.++.++..+++.+..+.+|...|.++.+.   +..++++      .+|+     .+..+.+|...|.+++|++  ..
T Consensus       151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~  225 (435)
T 1p22_A          151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GM  225 (435)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TE
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CE
Confidence            35678889999999999999999999999884   4555554      3453     5778889999999999974  58


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      |++++     .|+.|++||+.+++..   ..+.+|...|.+++|  +++++++++.||.|++||+++       ...+..
T Consensus       226 l~s~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-------~~~~~~  291 (435)
T 1p22_A          226 MVTCS-----KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-------CEFVRT  291 (435)
T ss_dssp             EEEEE-----TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-------CCEEEE
T ss_pred             EEEee-----CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-------CcEEEE
Confidence            99995     4899999999887655   567789999999999  788999999999999999987       566788


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      +..|...|.++.|+  ++++++|+.||.|++||+++++.+.   .+.+|...|.+++|  ++     .+|++|+.||.|+
T Consensus       292 ~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~--~~-----~~l~sg~~dg~i~  359 (435)
T 1p22_A          292 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRF--DN-----KRIVSGAYDGKIK  359 (435)
T ss_dssp             EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEC--CS-----SEEEEEETTSCEE
T ss_pred             EcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEE---EEeCCcCcEEEEEe--cC-----CEEEEEeCCCcEE
Confidence            88999999999994  7899999999999999999988776   66789999999999  34     6899999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +||+.........    ....++..   +.+|...|.+++|  ++       .+|++++.||.|++||+.
T Consensus       360 vwd~~~~~~~~~~----~~~~~~~~---~~~h~~~v~~l~~--~~-------~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          360 VWDLVAALDPRAP----AGTLCLRT---LVEHSGRVFRLQF--DE-------FQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEEHHHHTSTTSC----TTTTEEEE---ECCCSSCCCCEEE--CS-------SCEEECCSSSEEEEEC--
T ss_pred             EEECCCCCCcccc----ccchheee---ccCCCCCeEEEEe--CC-------CEEEEEeCCCEEEEEECC
Confidence            9999876422110    00013333   4579999999999  55       689999999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=224.17  Aligned_cols=250  Identities=14%  Similarity=0.205  Sum_probs=190.1

Q ss_pred             ecCcccccccCCCCCceeeeccCCC--ccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555           12 HGNDGLDTLESVPDAVPAVFTEPPI--EDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLVASSCK   76 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~~~~~   76 (298)
                      ...+.+..+.+|.+.|.++.|.|..  +..++++      .+|+.       ...+.+|...|++++|+|++++|++++ 
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-  105 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-  105 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-
Confidence            3455677889999999999999654  5666665      35531       267889999999999999999999995 


Q ss_pred             cCCCCceEEEEEEcCCceeeeccccccccEEEEEE--cCCCCEEEEEeCCCeEEEEEeccCCCCccce------------
Q 037555           77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF--SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY------------  142 (298)
Q Consensus        77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------  142 (298)
                          .|+.|++||+.+++.+. +..|...|.+++|  +|++++|++++.||.|++||++.........            
T Consensus       106 ----~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 3mmy_A          106 ----CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY  180 (368)
T ss_dssp             ----TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred             ----CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence                48999999999888766 5569999999999  8899999999999999999998643211000            


Q ss_pred             ----------------------eeeEEeeccCCceEEEEEccCCCE----EEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555          143 ----------------------QLIARQEAHKRIIWSCSWNPFGHE----FATGSRDKTVKIWAVENKSSVKQILALPPF  196 (298)
Q Consensus       143 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  196 (298)
                                            ........+...+.++.+.++...    +++++.||.|++||++..........+..|
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence                                  000000112234455555554433    999999999999999987432222244445


Q ss_pred             CC------------ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555          197 NS------------SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN  264 (298)
Q Consensus       197 ~~------------~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  264 (298)
                      ..            .|.+++|+|++     .+|++++.||.|++||++++             ..+..   +.+|...|.
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~s~~~dg~i~iwd~~~~-------------~~~~~---~~~~~~~v~  319 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVH-----GTLATVGSDGRFSFWDKDAR-------------TKLKT---SEQLDQPIS  319 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTT-----CCEEEEETTSCEEEEETTTT-------------EEEEE---CCCCSSCEE
T ss_pred             ecccccccccccccceEEEEEecCC-----CEEEEEccCCeEEEEECCCC-------------cEEEE---ecCCCCCce
Confidence            44            79999999998     79999999999999999876             44444   457999999


Q ss_pred             EEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +++|+|++       .+|++++.|+..+.|+
T Consensus       320 ~~~~s~~g-------~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          320 ACCFNHNG-------NIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEEECTTS-------SCEEEEECCCSTTCGG
T ss_pred             EEEECCCC-------CeEEEEeccccccccc
Confidence            99999999       8999999987655544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=220.40  Aligned_cols=223  Identities=17%  Similarity=0.269  Sum_probs=179.3

Q ss_pred             ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-------------cccccEEEEEEcC
Q 037555           48 ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-------------SHSLTVTQIRFSH  113 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-------------~~~~~v~~~~~~~  113 (298)
                      ....+.+|.+.|++++|+| ++++|++++.     |+.|++||+.+++....+.             +|...|.+++|+|
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGS-----DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEET-----TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcC-----CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            4677889999999999999 9999999954     8999999999876655443             5999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC---CEEEEeeCCCeEEEEEccCCcceee
Q 037555          114 -DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG---HEFATGSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       114 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~  189 (298)
                       ++.+|++++.||.|++||+..       ......+. +...+.++.|+|.+   .++++++.|+.|++||+++++... 
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-  180 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNT-------LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-  180 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTT-------TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-
T ss_pred             CCCcEEEEEeCCCeEEEeeCCC-------Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-
Confidence             778999999999999999987       44444444 67889999999844   599999999999999999888776 


Q ss_pred             eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                        .+..|...|.+++|+|++.    .++++++.||.|++||++..........................|...|.+++|+
T Consensus       181 --~~~~~~~~v~~~~~~~~~~----~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          181 --ILQGHRQEILAVSWSPRYD----YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             --EECCCCSCEEEEEECSSCT----TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             --eecCCCCcEEEEEECCCCC----cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence              6667899999999999983    4699999999999999987642211110000001111111235789999999999


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |++       .+|++++.|+.|++||++
T Consensus       255 ~~~-------~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          255 SDG-------LHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             TTS-------SEEEEEETTSCEEEEETT
T ss_pred             CCC-------CEEEEecCCCeEEEEECC
Confidence            999       899999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=212.84  Aligned_cols=230  Identities=23%  Similarity=0.327  Sum_probs=192.5

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      +.+..+.+|.+.|.++.+  +.+..++++      .+|+     ....+..|...|.+++|+|++++|++++.     |+
T Consensus         9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg   81 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----DT   81 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-----TS
T ss_pred             HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-----CC
Confidence            567889999999999998  455556655      4554     36677889999999999999999999954     89


Q ss_pred             EEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           84 EIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        84 ~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      .|++|++...   +.+..+.+|...|.++.|  +++++++++.||.|++||  .       ......+..|...+.++.|
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-------~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-------GSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-------TEEEEEEECCSSCEEEEEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-------CcEEEecccCCCceeEEEE
Confidence            9999998654   556677889999999999  577999999999999999  2       4567777889999999999


Q ss_pred             cc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555          161 NP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND  238 (298)
Q Consensus       161 ~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  238 (298)
                      .| +++++++++.||.|++||..  +...   .+.. +...+.+++|+|++     . +++++.|+.|++||++++    
T Consensus       151 ~~~~~~~l~~~~~d~~i~i~d~~--~~~~---~~~~~~~~~i~~~~~~~~~-----~-~~~~~~dg~i~i~d~~~~----  215 (313)
T 3odt_A          151 VSFSENKFLTASADKTIKLWQND--KVIK---TFSGIHNDVVRHLAVVDDG-----H-FISCSNDGLIKLVDMHTG----  215 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETT--EEEE---EECSSCSSCEEEEEEEETT-----E-EEEEETTSEEEEEETTTC----
T ss_pred             ccCCCCEEEEEECCCCEEEEecC--ceEE---EEeccCcccEEEEEEcCCC-----e-EEEccCCCeEEEEECCch----
Confidence            98 89999999999999999943  3333   3334 78899999999987     5 999999999999999876    


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                               +.+..+   .+|...|.+++|+|++        .|++++.||.|++||++
T Consensus       216 ---------~~~~~~---~~~~~~i~~~~~~~~~--------~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          216 ---------DVLRTY---EGHESFVYCIKLLPNG--------DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             ---------CEEEEE---ECCSSCEEEEEECTTS--------CEEEEETTSEEEEECTT
T ss_pred             ---------hhhhhh---hcCCceEEEEEEecCC--------CEEEEecCCEEEEEECC
Confidence                     444443   4689999999999997        48899999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.5e-32  Score=242.26  Aligned_cols=208  Identities=16%  Similarity=0.228  Sum_probs=183.4

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..+.+.+|.+.|++++|+|++++|++++     .+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            5678899999999999999999999995     48999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEe
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      ++||+.+       ...+..+..|...|.+++|+|++.+|++++.||.|++||+++.. ...   .+..|...|.+++|+
T Consensus        80 ~vw~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           80 RVFNYNT-------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---EEECCSSCEEEEEEE
T ss_pred             EEEECCC-------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---EEcCCCCcEEEEEEE
Confidence            9999987       56677888899999999999999999999999999999998763 333   455788999999999


Q ss_pred             e-ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec--CCCCCCCcceEEE
Q 037555          207 G-LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT--HEKPKNSRTMQLA  283 (298)
Q Consensus       207 ~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~l~  283 (298)
                      | ++     ..+++++.||.|++||+...             .....+.  ..+...|..++|+|  ++       .+|+
T Consensus       150 p~~~-----~~l~~~~~dg~v~vwd~~~~-------------~~~~~~~--~~~~~~v~~~~~~~~~~~-------~~l~  202 (814)
T 3mkq_A          150 PKDP-----STFASGCLDRTVKVWSLGQS-------------TPNFTLT--TGQERGVNYVDYYPLPDK-------PYMI  202 (814)
T ss_dssp             TTEE-----EEEEEEETTSEEEEEETTCS-------------SCSEEEE--CCCTTCCCEEEECCSTTC-------CEEE
T ss_pred             cCCC-----CEEEEEeCCCeEEEEECCCC-------------cceeEEe--cCCCCCEEEEEEEECCCC-------CEEE
Confidence            9 66     79999999999999999765             2223322  23558899999999  77       8999


Q ss_pred             eeeCCCcEEEeEec
Q 037555          284 SCGADNTVRVFQVN  297 (298)
Q Consensus       284 s~~~d~~i~iw~~~  297 (298)
                      +++.||.|++||++
T Consensus       203 ~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          203 TASDDLTIKIWDYQ  216 (814)
T ss_dssp             EECTTSEEEEEETT
T ss_pred             EEeCCCEEEEEECC
Confidence            99999999999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.5e-31  Score=220.57  Aligned_cols=247  Identities=19%  Similarity=0.301  Sum_probs=209.4

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV   71 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l   71 (298)
                      ++.++.++..+++.+..+.+|...|.++.+.   +..++++      .+|+     .+..+.+|...|.+++|  ++.+|
T Consensus       178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  252 (445)
T 2ovr_B          178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRV  252 (445)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred             CCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEE
Confidence            5677888999999999999999999999886   2334443      3453     46788899999999999  68899


Q ss_pred             EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ++++     .|+.|++||+.+++.+..+.+|...|.++.|  ++.++++++.||.|++||+++       ...+..+..|
T Consensus       253 ~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~  318 (445)
T 2ovr_B          253 VSGA-----YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------GNCIHTLTGH  318 (445)
T ss_dssp             EEEE-----TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-------CCEEEEECCC
T ss_pred             EEEc-----CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-------CCEEEEEcCC
Confidence            9995     4899999999999999999999999999999  788999999999999999987       5667788889


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      ...+.++.++  ++++++++.||.|++||+++++.+..+.....|...|.+++|++       .+|++|+.||.|++||+
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-------NFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-------SEEEEEETTSEEEEEET
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-------CEEEEEeCCCeEEEEEC
Confidence            9999888875  67999999999999999999887774433334888999999964       68999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeec--cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc----EEEeEec
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFD--PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT----VRVFQVN  297 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~----i~iw~~~  297 (298)
                      .++             +.+..+.  ....|...|++++|+|++       .+|++++.||+    |.+||++
T Consensus       390 ~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          390 KTG-------------EFIRNLVTLESGGSGGVVWRIRASNTK-------LVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             TTC-------------CEEEEEEECTTGGGTCEEEEEEECSSE-------EEEEEECSSSSSCCEEEEEECC
T ss_pred             CCC-------------ceeeeeeccccCCCCceEEEEEecCCE-------EEEEEcccCCCCccEEEEEECC
Confidence            877             4444442  124688999999999999       89999999998    9999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=219.94  Aligned_cols=219  Identities=18%  Similarity=0.272  Sum_probs=167.2

Q ss_pred             ceEEeccCCCceEEEEEcCC---CCEEEeEeccCCCCceEEEEEEcCC-ceee-eccccccccEEEEEEcCCCCEEEEEe
Q 037555           48 ESHKLYGHGNELFSLCCDHQ---GKLVASSCKAQSTAAAEIWLWEVGS-WKAM-GRLQSHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      .+..+.+|.+.|++++|+|+   |++|++++     .|+.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            56778899999999999999   69999995     489999999987 4444 67888999999999999999999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE--ccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-------
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW--NPFGHEFATGSRDKTVKIWAVENKSSVKQILAL-------  193 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------  193 (298)
                      .||.|++||+..       .... ....|...|.+++|  +|++++|++++.||.|++||+++.+....+...       
T Consensus       106 ~dg~v~iwd~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  177 (368)
T 3mmy_A          106 CDKTAKMWDLSS-------NQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD  177 (368)
T ss_dssp             TTSEEEEEETTT-------TEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred             CCCcEEEEEcCC-------CCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence            999999999986       3333 35679999999999  889999999999999999999987765532110       


Q ss_pred             -------------------------------CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555          194 -------------------------------PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP  242 (298)
Q Consensus       194 -------------------------------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  242 (298)
                                                     ......+.++.+.+... .....+++++.||.|++|+++.....     
T Consensus       178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~i~i~~~~~~~~~-----  251 (368)
T 3mmy_A          178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ-NKPTGFALGSIEGRVAIHYINPPNPA-----  251 (368)
T ss_dssp             EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT-SCEEEEEEEETTSEEEEEESSCSCHH-----
T ss_pred             ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC-CCCCeEEEecCCCcEEEEecCCCCcc-----
Confidence                                           01123344455544431 01123889999999999999765211     


Q ss_pred             CCCCcceeeeecc---------CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          243 APSTANIIIRFDP---------FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       243 ~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                           .....+..         ...|...|++++|+|++       .+|++++.||.|++||++
T Consensus       252 -----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-------~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          252 -----KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-------GTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             -----HHSEEEECSEEC----CCCEEECCEEEEEECTTT-------CCEEEEETTSCEEEEETT
T ss_pred             -----ccceeeeeeecccccccccccccceEEEEEecCC-------CEEEEEccCCeEEEEECC
Confidence                 11111110         11233379999999999       899999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=225.53  Aligned_cols=214  Identities=15%  Similarity=0.224  Sum_probs=166.4

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----------eeecccccc------------ccEEEEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----------AMGRLQSHS------------LTVTQIR  110 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~  110 (298)
                      .|.+.|++++|+|+|++||+|+.     |+.|+||++.+++           ....+.+|.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDK-----GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEET-----TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcC-----CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            36789999999999999999954     9999999998776           467788898            8899999


Q ss_pred             EcCCC--CEEEEEeCCCeEEEEEeccCCCCcc--------------------------------ceeeeEE-eeccCCce
Q 037555          111 FSHDD--NLLLSVSRDRQFSVFAIQRTGTGEI--------------------------------DYQLIAR-QEAHKRII  155 (298)
Q Consensus       111 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------~~~~~~~-~~~~~~~v  155 (298)
                      |+|++  .+|++++.|+.|++||+........                                ....... ...|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  7999999999999999975221000                                0001112 35799999


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee-----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL-----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      .+++|+|++++|+++ .|+.|++||++.........     .+..|...|.+++|+|++.    .+|++|+.||.|++||
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC----NTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT----TEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC----cEEEEEeCCCeEEEEE
Confidence            999999999999998 79999999998533322111     2456888999999999863    6999999999999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCccc------------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHV------------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +++.....         .....   +..|.            ..|.+++|+|++       .+|++++. +.|++||++
T Consensus       256 ~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          256 MRASALCD---------RHSKL---FEEPEDPSNRSFFSEIISSISDVKFSHSG-------RYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             TTTCSSSC---------TTCEE---ECCC-----CCHHHHHTTCEEEEEECTTS-------SEEEEEES-SEEEEEETT
T ss_pred             CcCCcccc---------ceeeE---eccCCCccccccccccCceEEEEEECCCC-------CEEEEeeC-CeEEEEeCC
Confidence            98764211         00222   22344            499999999999       89999998 999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-31  Score=222.12  Aligned_cols=209  Identities=13%  Similarity=0.056  Sum_probs=171.5

Q ss_pred             eccCCCceEEEEEcCCCCEE-EeEeccCCCCceEEEEEEcC--Cceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           52 LYGHGNELFSLCCDHQGKLV-ASSCKAQSTAAAEIWLWEVG--SWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l-~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      ..+|.+.|++++|+|++++| +++     +.|+.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.+|.
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~  172 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACA-----DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD  172 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEE-----GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEE-----CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCc
Confidence            34678899999999999996 777     358999999998  888877776  56789999999999999999999999


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      +++|++.......   .....+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..  .+.+|...|.++
T Consensus       173 v~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~h~~~v~~~  247 (450)
T 2vdu_B          173 VYSIDINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK--WLFGHKHFVSSI  247 (450)
T ss_dssp             EEEEETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--ECCCCSSCEEEE
T ss_pred             EEEEecCCccccc---ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--eecCCCCceEEE
Confidence            9999997643211   023356789999999999999   99999999999999999998877652  145789999999


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc----------------------CCcccc
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----------------------FACHVA  261 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~  261 (298)
                      +|+ ++     .+|++++.|+.|++||+++++             .+..+..                      ......
T Consensus       248 ~~s-d~-----~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (450)
T 2vdu_B          248 CCG-KD-----YLLLSAGGDDKIFAWDWKTGK-------------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF  308 (450)
T ss_dssp             EEC-ST-----TEEEEEESSSEEEEEETTTCC-------------EEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred             EEC-CC-----CEEEEEeCCCeEEEEECCCCc-------------EeeeecchhhhhhhhhhcccccccccccccccceE
Confidence            999 77     799999999999999998763             2222210                      012346


Q ss_pred             eEEEEEeecCCCCCCCcceEEEeee-CCCcEEEeEe
Q 037555          262 AVNRMAWKTHEKPKNSRTMQLASCG-ADNTVRVFQV  296 (298)
Q Consensus       262 ~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~  296 (298)
                      .|.+++|+|++       .+|++++ .|+.|++|++
T Consensus       309 ~v~~i~~~~~~-------~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          309 AVSKIIKSKNL-------PFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CEEEEEECSSS-------SEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEeCCC-------CEEEEEECCCCeEEEEEe
Confidence            79999999999       7888888 8999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.3e-31  Score=230.13  Aligned_cols=233  Identities=14%  Similarity=0.187  Sum_probs=196.2

Q ss_pred             cCCCCCceeeeccCCCccccccc-----CCC---------CceEEeccCCCc-eEEEEEcC--CCCEEEeEeccCCCCce
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH-----TLW---------PESHKLYGHGNE-LFSLCCDH--QGKLVASSCKAQSTAAA   83 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~h~~~-v~~~~~s~--~~~~l~~~~~~~~~~d~   83 (298)
                      ..|.+.|.++.++ |.+..++.+     .+|         .....+.+|... |++++|+|  ++++|++++     .|+
T Consensus        15 ~~~~~~v~~~~~s-pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-----~dg   88 (615)
T 1pgu_A           15 STQRNFTTHLSYD-PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-----ESG   88 (615)
T ss_dssp             CCCTTCCCCCEEE-TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-----TTS
T ss_pred             CCccCceeEEEEC-CCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-----CCC
Confidence            3677888888888 455555443     233         357788899999 99999999  999999995     489


Q ss_pred             EEEEEEcCCc--------eeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccceeeeEEeecc
Q 037555           84 EIWLWEVGSW--------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        84 ~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      .|++||+.++        +.+..+..|...|.+++|+|++++|++++.+    +.|++||.         ......+..|
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---------~~~~~~~~~~  159 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---------GNSLGEVSGH  159 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---------CCEEEECCSC
T ss_pred             EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---------CCcceeeecC
Confidence            9999999754        6667788899999999999999999999988    78888882         3456778899


Q ss_pred             CCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEeec-cccCCccEEEEeecCCcE
Q 037555          152 KRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGL-DRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       152 ~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~l~~g~~dg~i  226 (298)
                      ...|.+++|+|+++ .+++++.|+.|++||+++.+...   .+..|..   .|.+++|+|+ +     .+|++++.|+.|
T Consensus       160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~dg~i  231 (615)
T 1pgu_A          160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA---SDRTHHKQGSFVRDVEFSPDSG-----EFVITVGSDRKI  231 (615)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE---EECSSSCTTCCEEEEEECSTTC-----CEEEEEETTCCE
T ss_pred             CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee---eecccCCCCceEEEEEECCCCC-----CEEEEEeCCCeE
Confidence            99999999999997 89999999999999999887766   6667888   9999999999 7     799999999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeee-ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRF-DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++||++++             +.+..+ .....|...|.+++|+ ++       .+|++++.|+.|++||++
T Consensus       232 ~vwd~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~-~~-------~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          232 SCFDGKSG-------------EFLKYIEDDQEPVQGGIFALSWL-DS-------QKFATVGADATIRVWDVT  282 (615)
T ss_dssp             EEEETTTC-------------CEEEECCBTTBCCCSCEEEEEES-SS-------SEEEEEETTSEEEEEETT
T ss_pred             EEEECCCC-------------CEeEEecccccccCCceEEEEEc-CC-------CEEEEEcCCCcEEEEECC
Confidence            99999876             444443 1111689999999999 88       899999999999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-31  Score=216.73  Aligned_cols=248  Identities=14%  Similarity=0.119  Sum_probs=189.1

Q ss_pred             cccCCCCCceeeeccCCCccccccc------CCCC----c----eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCce
Q 037555           19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP----E----SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAA   83 (298)
Q Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~----~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~   83 (298)
                      ...+|.+.|.++.+.| .+..++++      .+|+    .    ...+.+|...|++++|+|+++ +|++++.     |+
T Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg   79 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QG   79 (342)
T ss_dssp             CSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TS
T ss_pred             cccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CC
Confidence            3468999999999994 56666554      3553    2    566779999999999999999 9999954     89


Q ss_pred             EEEEEEc-CCceeeecccc--ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--ceeeeEEeeccCCceEEE
Q 037555           84 EIWLWEV-GSWKAMGRLQS--HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--DYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        84 ~i~vw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~v~~~  158 (298)
                      .|++|++ .+++. ..+.+  |...|.+++|+| ++++++++.|+.|++||++.......  ....+..+. |...|.++
T Consensus        80 ~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           80 EILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             CEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             eEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            9999999 77654 66778  999999999999 99999999999999999885110000  011122333 78899999


Q ss_pred             EEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCCceEEEEEee-ccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          159 SWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVG-LDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      +|+|++  +++++.|+.|++||+++ ....... ....+...+.+++|+| ++     .++++++.||.|++|+++....
T Consensus       157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~-----~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQ-----EGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGG-----CEEEEEETTSEEEEEECCTTCC
T ss_pred             EecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCC-----CEEEEEecCCcEEEEEEcCCCc
Confidence            999877  99999999999999998 5443222 2335788999999999 88     7999999999999999976510


Q ss_pred             ccccCCCCCCcceeeeeccC------CcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          237 NDVSTPAPSTANIIIRFDPF------ACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ...       ......+...      ..|...|.+++|+|++       .+|++++.||.|++||++
T Consensus       229 ~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          229 DYN-------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-------KFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             STT-------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-------CCEEEEETTSCEEEEETT
T ss_pred             ccc-------cccceeeecccccccccccceeEEEEEEcCCC-------CEEEEecCCceEEEEcCc
Confidence            000       0112222110      1245599999999999       899999999999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-30  Score=226.88  Aligned_cols=254  Identities=13%  Similarity=0.204  Sum_probs=210.6

Q ss_pred             cccceeeeecC----cccccccCCCCC-ceeeeccCC-Cccccccc------CCCCc-------------eEEeccCCCc
Q 037555            4 ATRETVERHGN----DGLDTLESVPDA-VPAVFTEPP-IEDQLAWH------TLWPE-------------SHKLYGHGNE   58 (298)
Q Consensus         4 ~~~~~~~~~~~----~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~------~~~~~-------------~~~~~~h~~~   58 (298)
                      +.++.++..++    +.+..+.+|.+. |.++.+.|- .+..++++      .+|+.             ...+.+|..+
T Consensus        39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  118 (615)
T 1pgu_A           39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP  118 (615)
T ss_dssp             TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred             CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence            45677888888    899999999999 999999941 66666665      45643             3456679999


Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      |.+++|+|++++|++++.+. ...+.|++||  .++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+..   
T Consensus       119 v~~~~~s~~~~~l~~~~~~~-~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---  192 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGR-DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---  192 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCS-SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---
T ss_pred             EEEEEEeCCCCEEEEeccCC-CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---
Confidence            99999999999999997521 0127888888  5677788899999999999999998 899999999999999886   


Q ss_pred             CccceeeeEEeeccCC---ceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeec-C---CCCCceEEEEEeecc
Q 037555          138 GEIDYQLIARQEAHKR---IIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILAL-P---PFNSSVTALSWVGLD  209 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~  209 (298)
                          ...+..+..|..   .|.+++|+|+ +++|++++.||.|++||+++++.+.   .+ .   .|...|.+++|+ ++
T Consensus       193 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~  264 (615)
T 1pgu_A          193 ----FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL-DS  264 (615)
T ss_dssp             ----BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES-SS
T ss_pred             ----cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE---EecccccccCCceEEEEEc-CC
Confidence                667788888998   9999999999 9999999999999999999888776   55 3   688999999999 77


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccC-CcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPF-ACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                           .+|++++.|+.|++||++++             +....+... ..+...+.++.|. ++       .++++++.|
T Consensus       265 -----~~l~~~~~d~~i~~wd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~l~~~~~~  318 (615)
T 1pgu_A          265 -----QKFATVGADATIRVWDVTTS-------------KCVQKWTLDKQQLGNQQVGVVAT-GN-------GRIISLSLD  318 (615)
T ss_dssp             -----SEEEEEETTSEEEEEETTTT-------------EEEEEEECCTTCGGGCEEEEEEE-ET-------TEEEEEETT
T ss_pred             -----CEEEEEcCCCcEEEEECCCC-------------cEEEEEcCCCCcccCceeEEEeC-CC-------CeEEEEECC
Confidence                 79999999999999999876             444444321 2345778888886 66       799999999


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      +.|++||++
T Consensus       319 g~i~~~d~~  327 (615)
T 1pgu_A          319 GTLNFYELG  327 (615)
T ss_dssp             SCEEEEETT
T ss_pred             CCEEEEECC
Confidence            999999964

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.8e-30  Score=207.61  Aligned_cols=252  Identities=19%  Similarity=0.294  Sum_probs=194.8

Q ss_pred             ccccceeeeecCcccccc--cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555            3 AATRETVERHGNDGLDTL--ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      +..++.|+..+|+.+..+  .+|...|.++.+. |.+..++++      .+|+     .+..+.+|...+.++.+.  +.
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~  120 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY  120 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CC
Confidence            445777888888877665  4667778888888 555666655      3553     467777888888776654  56


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ  148 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (298)
                      .+++++     .++.+++|+.... ..+..+.+|...+..+.+.++++++++++.|+.|++||+......   .......
T Consensus       121 ~l~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~  192 (318)
T 4ggc_A          121 ILSSGS-----RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTF  192 (318)
T ss_dssp             EEEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SCCSEEE
T ss_pred             EEEEEe-----cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---ccceeee
Confidence            788884     4788888887755 345667789999999999999999999999999999999865432   2234455


Q ss_pred             eccCCceEEEEEccCCC-E--EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe--ecC
Q 037555          149 EAHKRIIWSCSWNPFGH-E--FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG--MES  223 (298)
Q Consensus       149 ~~~~~~v~~~~~~~~~~-~--l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g--~~d  223 (298)
                      ..+...|..+.++|.+. .  +++++.++.|++||.+......   .. .+...+..+.|+|.+     ..++++  +.|
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~---~~-~~~~~v~~~~~~~~~-----~~~~~~sg~~d  263 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---AV-DAHSQVCSILWSPHY-----KELISGHGFAQ  263 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE---EE-ECSSCEEEEEEETTT-----TEEEEEECTTT
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc---cc-cceeeeeeeeecccc-----cceEEEEEcCC
Confidence            66788999999999664 3  3456788999999998877654   22 366789999999988     455544  479


Q ss_pred             CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +.|++||++++             +.+..   +.+|...|++|+|+|++       .+|+|++.|++|+|||+.
T Consensus       264 ~~i~iwd~~~~-------------~~~~~---l~gH~~~V~~l~~spdg-------~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          264 NQLVIWKYPTM-------------AKVAE---LKGHTSRVLSLTMSPDG-------ATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CCEEEEETTTC-------------CEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTTEEEEECCS
T ss_pred             CEEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEecCCeEEEEECC
Confidence            99999999876             55555   45799999999999999       899999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-30  Score=244.71  Aligned_cols=220  Identities=16%  Similarity=0.302  Sum_probs=186.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      ...+.+|.+.|++++|+|++++|++|+     .|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK  682 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence            456789999999999999999999995     489999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      +||+.+       ...+..+..|...|.+++|+|  ++.++++++.|+.|++||+++++...   .+.+|...|.+++|+
T Consensus       683 vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          683 IWDSAT-------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EEETTT-------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEEC
T ss_pred             EEECCC-------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEe
Confidence            999987       567788889999999999999  55689999999999999999988776   667899999999999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCC-----------------------CCC------------------
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-----------------------APS------------------  245 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------------------~~~------------------  245 (298)
                      |++     .++++++.||.|++||+.++........                       .+.                  
T Consensus       753 p~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          753 PDD-----ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             SST-----TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             cCC-----CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            998     7999999999999999976532211000                       000                  


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .......+  ..+|...|.+++|+|++       .++++++.|+.|++||+.
T Consensus       828 ~~~~~~~~--~~~~~~~v~~~~~sp~~-------~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          828 TSGLLAEI--HTGHHSTIQYCDFSPYD-------HLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             TCCEEEEE--ECSSSSCCCEEEECSST-------TEEEEECSSSCEEEEETT
T ss_pred             CCCceeEE--cCCCCCceEEEEEcCCC-------CEEEEEeCCCeEEEEEcC
Confidence            00011111  22688899999999999       899999999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-31  Score=222.33  Aligned_cols=214  Identities=11%  Similarity=0.108  Sum_probs=150.1

Q ss_pred             EeccCCCceEEEEEcC--------CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEE
Q 037555           51 KLYGHGNELFSLCCDH--------QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSV  121 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~--------~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  121 (298)
                      .+.+|.+.|++++|+|        ++++||+++     .|++|+|||+.++..+..+..|...|.+++|+|++ ++|+++
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  205 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG  205 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence            3679999999999998        789999995     49999999998888887788899999999999987 489999


Q ss_pred             eCCCeEEEEEeccCCCCccc------------------eeeeEEeeccCCceEEEEEc-cCCCEEEEeeCCCeEEEEEcc
Q 037555          122 SRDRQFSVFAIQRTGTGEID------------------YQLIARQEAHKRIIWSCSWN-PFGHEFATGSRDKTVKIWAVE  182 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~  182 (298)
                      +.|++|++||+.........                  .........|...+.++.|. |+++.|++++.|+.+++||+.
T Consensus       206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence            99999999999865421110                  00111224577888999987 799999999999999999998


Q ss_pred             CCcceeeeeecCCCCCceEEEEEeeccc---------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555          183 NKSSVKQILALPPFNSSVTALSWVGLDR---------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA  247 (298)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  247 (298)
                      ..+...   .+..+...+..+.+.|+..               ..++.++++|+.||.|++||+.++             
T Consensus       286 ~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-------------  349 (393)
T 4gq1_A          286 ANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-------------  349 (393)
T ss_dssp             ---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-------------
T ss_pred             cCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-------------
Confidence            776554   3333333333333333211               112357788889999999999876             


Q ss_pred             ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .....+   ..|..+|.+++|+|++       ++||+++.|| +.+|++
T Consensus       350 ~~~~~~---~~~~~~V~svafspdG-------~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          350 DSNSIP---IQLGMPIVDFCWHQDG-------SHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TCCEEE---EECSSCEEEEEECTTS-------SEEEEEESSE-EEEEEE
T ss_pred             cEEEEe---cCCCCcEEEEEEcCCC-------CEEEEEeCCC-eEEEEE
Confidence            333332   3478899999999999       8999998776 555554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=1.5e-29  Score=212.42  Aligned_cols=224  Identities=17%  Similarity=0.371  Sum_probs=187.5

Q ss_pred             cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE   89 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~   89 (298)
                      .+|...|.++.+.   +..++++      .+|+     ....+.+|...|.+++|  ++++|++|+     .||.|++||
T Consensus       130 ~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~-----~dg~i~vwd  199 (435)
T 1p22_A          130 SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS-----SDSTVRVWD  199 (435)
T ss_dssp             CSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE-----TTSCEEEEE
T ss_pred             cCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEc-----CCCeEEEEE
Confidence            4566678777763   5555554      3453     56788899999999999  788999995     499999999


Q ss_pred             cCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEE
Q 037555           90 VGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT  169 (298)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (298)
                      +.+++.+..+.+|...|.+++|+  +..+++++.||.|++||+.....    ......+.+|...|.+++|  +++++++
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l~s  271 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF--DDKYIVS  271 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC----CEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC----ceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence            99999999999999999999996  45999999999999999987432    2334667789999999999  6889999


Q ss_pred             eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555          170 GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       170 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                      ++.||.|++||+++++.+.   .+..|...|.++.+++       .++++|+.||.|++||++++             .+
T Consensus       272 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~-------~~l~~g~~dg~i~iwd~~~~-------------~~  328 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVR---TLNGHKRGIACLQYRD-------RLVVSGSSDNTIRLWDIECG-------------AC  328 (435)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEEET-------TEEEEEETTSCEEEEETTTC-------------CE
T ss_pred             EeCCCeEEEEECCcCcEEE---EEcCCCCcEEEEEeCC-------CEEEEEeCCCeEEEEECCCC-------------CE
Confidence            9999999999999988777   5567889999999953       68999999999999999876             55


Q ss_pred             eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +..+   .+|...|.+++|  ++       .+|++++.||.|++||++
T Consensus       329 ~~~~---~~h~~~v~~~~~--~~-------~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          329 LRVL---EGHEELVRCIRF--DN-------KRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             EEEE---CCCSSCEEEEEC--CS-------SEEEEEETTSCEEEEEHH
T ss_pred             EEEE---eCCcCcEEEEEe--cC-------CEEEEEeCCCcEEEEECC
Confidence            5553   469999999999  55       799999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.2e-30  Score=217.34  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=165.6

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---eeecccc-------------------------------
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---AMGRLQS-------------------------------  101 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~~~~-------------------------------  101 (298)
                      ..++.+++|+|+|++|++++      ++.|++||+.+++   .+..+..                               
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred             cccEEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence            35789999999999777764      6789999998887   5444432                               


Q ss_pred             -----------------------ccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee--ccCCce
Q 037555          102 -----------------------HSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE--AHKRII  155 (298)
Q Consensus       102 -----------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v  155 (298)
                                             |...|.+++|+|++++| ++++.||.|++||+....     ...+..+.  .|...|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-----KNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-----SSCEEEEEEEECSSCE
T ss_pred             cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-----CceeeeeecccCCCCc
Confidence                                   33369999999999986 889999999999998211     23344443  567889


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeec---cccCCccEEEEeecCCcEEEEEe
Q 037555          156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGL---DRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      .+++|+|++++|++++.+|.|++|++.+..... ....+.+|...|++++|+|+   +     .+|++|+.|+.|++||+
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-----~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-----QFIITSDRDEHIKISHY  227 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-----EEEEEEETTSCEEEEEE
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-----cEEEEEcCCCcEEEEEC
Confidence            999999999999999999999999998876543 22345568899999999998   7     79999999999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +++             ..+..+  +.+|...|.+++|+ ++       .+|++++.|+.|++||++
T Consensus       228 ~~~-------------~~~~~~--~~~h~~~v~~~~~s-d~-------~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          228 PQC-------------FIVDKW--LFGHKHFVSSICCG-KD-------YLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             SCT-------------TCEEEE--CCCCSSCEEEEEEC-ST-------TEEEEEESSSEEEEEETT
T ss_pred             CCC-------------ceeeee--ecCCCCceEEEEEC-CC-------CEEEEEeCCCeEEEEECC
Confidence            876             444332  34799999999999 88       899999999999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=5.3e-30  Score=208.13  Aligned_cols=240  Identities=13%  Similarity=0.074  Sum_probs=196.3

Q ss_pred             ccccceeeeecCc---ccccccCCCCCceeeeccCCCcc-ccccc------CCCC-----ceEEecc--CCCceEEEEEc
Q 037555            3 AATRETVERHGND---GLDTLESVPDAVPAVFTEPPIED-QLAWH------TLWP-----ESHKLYG--HGNELFSLCCD   65 (298)
Q Consensus         3 ~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------~~~~-----~~~~~~~--h~~~v~~~~~s   65 (298)
                      ++.++.++..+++   .+..+.+|...|.++.+.| .+. .++++      .+|+     ....+.+  |...|.+++|+
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~  110 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY  110 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE
T ss_pred             CCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeC
Confidence            4567778888777   3566679999999999994 455 55554      3454     3567788  99999999999


Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCC---------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc-C
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGS---------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR-T  135 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~  135 (298)
                      | +.+|++++.     |+.|++||+.+         ++++..+. |...|.+++|+|++  +++++.|+.|++||++. .
T Consensus       111 ~-~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~  181 (342)
T 1yfq_A          111 G-DDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             T-TTEEEEEET-----TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred             C-CCEEEEEcC-----CCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence            9 999999954     89999999988         77777777 89999999999887  99999999999999986 3


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCC------cceeeeeecCCCC---------Cc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENK------SSVKQILALPPFN---------SS  199 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~---------~~  199 (298)
                      .     .........|...+.+++|+| ++++|++++.||.|++|+++..      +...   .+..|.         ..
T Consensus       182 ~-----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  253 (342)
T 1yfq_A          182 D-----DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF---AFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             T-----CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE---EEECCCCCTTCCSSCCC
T ss_pred             c-----ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce---eeeccccccccccccee
Confidence            3     122334456788999999999 9999999999999999999876      4444   333443         48


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-cceEEEEEeecCCCCCCCc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-VAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~  278 (298)
                      |.+++|+|++     .+|++++.||.|++||+.++             +.+..   +.+| ...|.+++  |++      
T Consensus       254 i~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~-------------~~~~~---~~~~h~~~v~~~~--~~~------  304 (342)
T 1yfq_A          254 VNSIEFSPRH-----KFLYTAGSDGIISCWNLQTR-------------KKIKN---FAKFNEDSVVKIA--CSD------  304 (342)
T ss_dssp             EEEEEECTTT-----CCEEEEETTSCEEEEETTTT-------------EEEEE---CCCCSSSEEEEEE--ECS------
T ss_pred             EEEEEEcCCC-----CEEEEecCCceEEEEcCccH-------------hHhhh---hhcccCCCceEec--CCC------
Confidence            9999999998     79999999999999999876             44444   4567 99999999  888      


Q ss_pred             ceEEEeeeCCCc
Q 037555          279 TMQLASCGADNT  290 (298)
Q Consensus       279 ~~~l~s~~~d~~  290 (298)
                       .+|++++.||.
T Consensus       305 -~~l~s~s~Dg~  315 (342)
T 1yfq_A          305 -NILCLATSDDT  315 (342)
T ss_dssp             -SEEEEEEECTH
T ss_pred             -CeEEEEecCCc
Confidence             89999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.7e-30  Score=207.83  Aligned_cols=266  Identities=15%  Similarity=0.143  Sum_probs=176.9

Q ss_pred             eecCcccccccCCCCCceeeeccCCCccccccc-----CCCCc---eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           11 RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      ..+.+.+.....|.+.|.++.|+ |++..++.+     ++|+.   ......+...+..+++.++++.++..+    +.|
T Consensus         6 ~~~~~~~~~~~~h~~~V~~v~fs-~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d   80 (355)
T 3vu4_A            6 MITRNPIVPENHVSNPVTDYEFN-QDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVT----GVK   80 (355)
T ss_dssp             -------------CCCCCEEEEC-TTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEEC----SST
T ss_pred             ccccCCccccccCCCceEEEEEC-CCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEE----CCc
Confidence            34556677789999999999999 566666665     35531   122222333588889999888886544    347


Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCC-----------------------------------CEEEE--EeCCC
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-----------------------------------NLLLS--VSRDR  125 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~dg  125 (298)
                      +.|++||..+++.+..+. +...|.+++|+++.                                   .+++.  ++.||
T Consensus        81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g  159 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLG  159 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTT
T ss_pred             cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCc
Confidence            899999999999888776 66789999888753                                   12222  35666


Q ss_pred             eEEEEEeccCCCCcc--------ceee-eEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecC-
Q 037555          126 QFSVFAIQRTGTGEI--------DYQL-IARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALP-  194 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~-  194 (298)
                      .|++||+........        ...+ +..+.+|...|.+++|+|++++|++++.|++ |++||+++++.+.   .+. 
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~---~~~~  236 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR---EFRR  236 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE---EEEC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEEc
Confidence            777777664220000        0012 5677899999999999999999999999998 9999999988877   444 


Q ss_pred             C-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-------CCcceeeeeccCCcccceEEEE
Q 037555          195 P-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-------STANIIIRFDPFACHVAAVNRM  266 (298)
Q Consensus       195 ~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~  266 (298)
                      + |...|.+++|+|++     .+|++++.|+.|++||++............       ........+.....+......+
T Consensus       237 g~h~~~v~~~~~s~~~-----~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (355)
T 3vu4_A          237 GLDRADVVDMKWSTDG-----SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI  311 (355)
T ss_dssp             TTCCSCEEEEEECTTS-----CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred             CCCCCcEEEEEECCCC-----CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence            3 88999999999998     799999999999999997653221100000       0000001111011223344679


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|++++       .+|++++.||.+++|++.
T Consensus       312 a~~~d~-------~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          312 AWISES-------SLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             EESSSS-------EEEEEETTTTEEEEEEEE
T ss_pred             EEeCCC-------CEEEEEeCCCeEEEEEEE
Confidence            999999       899999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-30  Score=209.54  Aligned_cols=198  Identities=6%  Similarity=0.064  Sum_probs=153.8

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC---------Cceeeeccc-cccccEEEEEEcC--CCCEEEEEeC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG---------SWKAMGRLQ-SHSLTVTQIRFSH--DDNLLLSVSR  123 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~  123 (298)
                      ...|.++.|+|+   +++++     .|+.|++|+..         +++.+..+. .|...|.+++|+|  +++++++++.
T Consensus        76 ~~~v~~~~~~~~---~~s~s-----~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  147 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRG-----PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN  147 (343)
T ss_dssp             EECCCTTCCCCS---EEEEC-----STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET
T ss_pred             cCCceeeeeCCc---eEEec-----CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC
Confidence            466888888887   88884     58999999765         333333333 5668899999999  9999999999


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCC-CCCce
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPP-FNSSV  200 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~-~~~~v  200 (298)
                      ||.|++||++..       ...... ..+...+.+++|+|++.+|++|+.||.|++||+++++.. .   .+.. |..+|
T Consensus       148 dg~i~~wd~~~~-------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~---~~~~~h~~~v  217 (343)
T 3lrv_A          148 RGTIGFQSYEDD-------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS---RFPVDEEAKI  217 (343)
T ss_dssp             TCCEEEEESSSS-------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---ECCCCTTSCE
T ss_pred             CCcEEEEECCCC-------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---EEeccCCCCE
Confidence            999999999873       333333 345568999999999999999999999999999998876 4   4555 89999


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE--EEEeecCCCCCCCc
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN--RMAWKTHEKPKNSR  278 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~  278 (298)
                      ++++|+|++     .+|++++ ++.|++||+++..             ....+..+..|...+.  +++|+|++      
T Consensus       218 ~~l~fs~~g-----~~l~s~~-~~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~g------  272 (343)
T 3lrv_A          218 KEVKFADNG-----YWMVVEC-DQTVVCFDLRKDV-------------GTLAYPTYTIPEFKTGTVTYDIDDSG------  272 (343)
T ss_dssp             EEEEECTTS-----SEEEEEE-SSBEEEEETTSST-------------TCBSSCCCBC-----CCEEEEECTTS------
T ss_pred             EEEEEeCCC-----CEEEEEe-CCeEEEEEcCCCC-------------cceeecccccccccccceEEEECCCC------
Confidence            999999998     7999999 4599999998763             2222222223444444  69999999      


Q ss_pred             ceEEEeeeC-CCcEEEeEec
Q 037555          279 TMQLASCGA-DNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~-d~~i~iw~~~  297 (298)
                       .+|++++. |+.|++|++.
T Consensus       273 -~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          273 -KNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             -SEEEEEETTTTEEEEEEEC
T ss_pred             -CEEEEecCCCCcEEEEEEc
Confidence             89999888 9999999873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.7e-29  Score=205.06  Aligned_cols=206  Identities=19%  Similarity=0.294  Sum_probs=169.0

Q ss_pred             ccccCCCCCceeeeccCCCccccccc------CCCC---------ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCC
Q 037555           18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP---------ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQST   80 (298)
Q Consensus        18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~   80 (298)
                      ..+.+|.+.|.++.|. |.+..++++      .+|+         ....+.+|...|++++|+|  ++++|++++.    
T Consensus         5 ~~~~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~----   79 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY----   79 (351)
T ss_dssp             CEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET----
T ss_pred             ccCcccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC----
Confidence            4567999999999999 466666665      3553         3566789999999999999  6999999954    


Q ss_pred             CceEEEEEEcCCc---------eeeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCcc---------
Q 037555           81 AAAEIWLWEVGSW---------KAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEI---------  140 (298)
Q Consensus        81 ~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~---------  140 (298)
                       |+.|++||+.++         +.+..+..|...|.+++|+|+  +++|++++.||.|++||++.......         
T Consensus        80 -dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           80 -DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             -TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             -CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence             899999999876         556778889999999999999  99999999999999999876442110         


Q ss_pred             --------------------------------------------ceeeeEEeeccCCceEEEEEccCC----CEEEEeeC
Q 037555          141 --------------------------------------------DYQLIARQEAHKRIIWSCSWNPFG----HEFATGSR  172 (298)
Q Consensus       141 --------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~  172 (298)
                                                                  .......+..|...|.+++|+|++    ++|++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                                                        011245566789999999999998    89999999


Q ss_pred             CCeEEEEEccCCcc-------------------------------------------eeeeeecCCCCCceEEEEEeecc
Q 037555          173 DKTVKIWAVENKSS-------------------------------------------VKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       173 dg~i~~wd~~~~~~-------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ||.|++||++....                                           ...+..+.+|...|++++|+|++
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            99999999986421                                           12333567789999999999998


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeec
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                           .+|++++.||.|++|++.++
T Consensus       319 -----~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          319 -----TILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             -----CCEEEEETTSCEEEEEECTT
T ss_pred             -----CEEEEecCCCcEEEEecCcC
Confidence                 79999999999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=229.63  Aligned_cols=247  Identities=12%  Similarity=0.095  Sum_probs=184.3

Q ss_pred             ccCCCCCceeeeccCCCccccccc------CCCCc----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555           20 LESVPDAVPAVFTEPPIEDQLAWH------TLWPE----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE   89 (298)
Q Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~   89 (298)
                      ..+|.+.|.+++|+ |.+..++++      ++|+.    ......|..+|.+++|+| +++|++++     .|+.|++||
T Consensus        13 ~~gh~~~V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s-----~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN-----AKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE-----TTCEEEEEE
T ss_pred             ccCCCCCcEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE-----CcCeEEEEE
Confidence            34889999999999 566777766      45642    223345888999999999 88999995     499999999


Q ss_pred             cCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee-------EEeeccCCceEEEEEcc
Q 037555           90 VGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI-------ARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~  162 (298)
                      +.+++.+..+. |...|++++|+|++++|++|+.||.|++||++......  . .+       ..+..|...|.+++|+|
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~-~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS--F-KLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE--E-EECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc--c-eeccccccccccccCCCCeEEEEEcc
Confidence            99998888876 77899999999999999999999999999998632100  0 00       23356889999999999


Q ss_pred             C-CCEEEEeeCCCeEEEEEccCCcceeeeeec---------------CCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          163 F-GHEFATGSRDKTVKIWAVENKSSVKQILAL---------------PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       163 ~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      + +..|++|+.||.| +||+++.+....+...               ..|...|.+++|+|++     .+|++|+.|+.|
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-----~~lasgs~Dg~i  235 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-----LHIITIHEDNSL  235 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-----SEEEEEETTCCE
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-----CEEEEEECCCeE
Confidence            5 5789999999999 9999988776533211               1235779999999998     799999999999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCC-------------cccceEEEEEeecCCCCCCCcceEEEeeeCC-----
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFA-------------CHVAAVNRMAWKTHEKPKNSRTMQLASCGAD-----  288 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-----  288 (298)
                      ++||+++++....           ..+....             .|...|.+++|++....  +++.+|++++.|     
T Consensus       236 ~lWd~~~g~~~~~-----------r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p--d~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          236 VFWDANSGHMIMA-----------RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNP--EYTSLLISHKSISRGDN  302 (902)
T ss_dssp             EEEETTTCCEEEE-----------ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST--TEEEEEEEEECSTTSSC
T ss_pred             EEEECCCCcEEEE-----------EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCC--CCCEEEEeCCCCCCCCC
Confidence            9999987632110           0111111             24568999999753200  011577777766     


Q ss_pred             CcEEEeEe
Q 037555          289 NTVRVFQV  296 (298)
Q Consensus       289 ~~i~iw~~  296 (298)
                      ..+++|++
T Consensus       303 ~~v~~~~~  310 (902)
T 2oaj_A          303 QSLTMIDL  310 (902)
T ss_dssp             CCEEEEEE
T ss_pred             ceEEEEec
Confidence            37888884

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=3.3e-29  Score=205.38  Aligned_cols=194  Identities=15%  Similarity=0.150  Sum_probs=154.9

Q ss_pred             CCCCCceeeeccCCCccccccc--------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555           22 SVPDAVPAVFTEPPIEDQLAWH--------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW   88 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw   88 (298)
                      .+.+.+..++|+ |++..++.+        ++|+     ++..+ .|...|.+++|+|+|++|++++      ++.+.+|
T Consensus       131 ~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s------~~~~~~~  202 (365)
T 4h5i_A          131 NADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYIT------GSSLEVI  202 (365)
T ss_dssp             CTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEEC------SSCEEEE
T ss_pred             CcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecc------ceeEEEE
Confidence            344557788898 566665422        4664     24444 5888999999999999999995      4456777


Q ss_pred             EcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCC----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           89 EVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDR----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        89 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      +..+++.+.  ....|...|.+++|+|+++++++++.|+    .+++|++......   ......+..|...|++++|+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEECT
T ss_pred             EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEECC
Confidence            776666543  3557899999999999999999999887    6888888753210   223456678899999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeee-cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILA-LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ++++||+|+.|+.|++||+++++.+.   . +.+|...|++++|+|++     .+|++|+.|++|+||++...
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~~~~~---~~~~gH~~~V~~v~fSpdg-----~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDLSMSK---IFKQAHSFAITEVTISPDS-----TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEE---EETTSSSSCEEEEEECTTS-----CEEEEEETTSEEEEEECCTT
T ss_pred             CCCceEEEcCCCEEEEEECCCCcEEE---EecCcccCCEEEEEECCCC-----CEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999988766   4 46899999999999999     79999999999999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.8e-29  Score=204.29  Aligned_cols=208  Identities=12%  Similarity=0.098  Sum_probs=153.8

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~  126 (298)
                      .+..+.+|...|++++|+|+|++|++|+     .++ +++|++.+++......  ...+..+++.++++.+ ++++.|+.
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILST-----LKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEEC-----SSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEc-----CCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence            3445678999999999999999999994     354 7899998877654433  2247788898888877 56778899


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-----------------------------------CEEEE--
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-----------------------------------HEFAT--  169 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--  169 (298)
                      |++||..+       ...+..+. +...|.+++|+++.                                   .++++  
T Consensus        83 v~iWd~~~-------~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s  154 (355)
T 3vu4_A           83 VHIWDDVK-------KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN  154 (355)
T ss_dssp             EEEEETTT-------TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEECCC-------CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence            99999987       44455544 55677777776542                                   23444  


Q ss_pred             eeCCCeEEEEEccCCcce------------ee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCc-EEEEEeeecc
Q 037555          170 GSRDKTVKIWAVENKSSV------------KQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV-IELWSISVNR  235 (298)
Q Consensus       170 ~~~dg~i~~wd~~~~~~~------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~  235 (298)
                      |+.||.|++||++++...            .+ +..+.+|...|++++|+|++     .+|++|+.|+. |++||++++ 
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-----~~l~s~s~d~~~v~iwd~~~~-  228 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-----DMVATCSQDGTIIRVFKTEDG-  228 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-----SEEEEEETTCSEEEEEETTTC-
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-----CEEEEEeCCCCEEEEEECCCC-
Confidence            577888999998865410            01 23677899999999999998     79999999998 999999877 


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                  +++..+.. ..|...|.+++|+|++       .+|++++.|++|++||++
T Consensus       229 ------------~~~~~~~~-g~h~~~v~~~~~s~~~-------~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          229 ------------VLVREFRR-GLDRADVVDMKWSTDG-------SKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ------------CEEEEEEC-TTCCSCEEEEEECTTS-------CEEEEEETTCEEEEEESS
T ss_pred             ------------cEEEEEEc-CCCCCcEEEEEECCCC-------CEEEEEECCCEEEEEEcc
Confidence                        55555431 1288999999999999       899999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=8.2e-28  Score=200.90  Aligned_cols=206  Identities=21%  Similarity=0.399  Sum_probs=171.9

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      .+.+|...|++++|+|+|++|++|+.     |+.|++||+.+++.+..+.+|...+.++.+  ++.++++++.|+.+++|
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~-----Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~  214 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHH  214 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEEC-----CCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEe
Confidence            34578889999999999999999954     999999999999999999999999999887  46799999999999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      |....      ...+..+..|...+..+.|+|+++++++++.|+.+++||...++... .+.....+...|.+++|+|.+
T Consensus       215 d~~~~------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~  288 (420)
T 4gga_A          215 DVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ  288 (420)
T ss_dssp             ETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred             eeccc------ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence            98764      34567788999999999999999999999999999999998765322 222455688999999999987


Q ss_pred             ccCCccEEEEe--ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-
Q 037555          210 RQKNHGFLAVG--MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-  286 (298)
Q Consensus       210 ~~~~~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-  286 (298)
                      .    .+++++  +.|+.|++||+.++             .+...+.    +...+.++.|+|++       ..|++++ 
T Consensus       289 ~----~~la~~~gs~D~~I~iwd~~t~-------------~~~~~~~----~~~~v~~~~~~~~~-------~~lv~~sg  340 (420)
T 4gga_A          289 S----NVLATGGGTSDRHIRIWNVCSG-------------ACLSAVD----AHSQVCSILWSPHY-------KELISGHG  340 (420)
T ss_dssp             T----TEEEEEECTTTCEEEEEETTTT-------------EEEEEEE----CSSCEEEEEEETTT-------TEEEEEEC
T ss_pred             c----cEEEEEeecCCCEEEEEeCCcc-------------ccceeec----cccceeeeeecCCC-------CeEEEEEe
Confidence            4    666654  57999999999877             5555543    45678999999998       5666544 


Q ss_pred             -CCCcEEEeEec
Q 037555          287 -ADNTVRVFQVN  297 (298)
Q Consensus       287 -~d~~i~iw~~~  297 (298)
                       .|+.|+|||++
T Consensus       341 ~~d~~I~iwd~~  352 (420)
T 4gga_A          341 FAQNQLVIWKYP  352 (420)
T ss_dssp             TTTCCEEEEETT
T ss_pred             cCCCEEEEEECC
Confidence             79999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.2e-29  Score=207.08  Aligned_cols=223  Identities=10%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             cCCCCCceeeeccCCCcccccccCCCCce------EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWHTLWPES------HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK   94 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~   94 (298)
                      +.....|..+.++ |++..++++..-..+      +.+.+|...|.+++|+|+|     .       ++.+.+|+.+ +.
T Consensus        12 ~~~~~~v~sv~~S-pDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-----~-------~~~~~~~~~~-~~   77 (588)
T 2j04_A           12 KEFEDWKNNLTWA-RDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-----F-------ENKLDFELAQ-QN   77 (588)
T ss_dssp             CCCSSSSCCEEEC-TTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-----C-------CCTTTTSCCC-SS
T ss_pred             hHhhccEEEEEEC-CCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-----C-------cceEEEEeCC-Cc
Confidence            3445677888888 677777777543222      2336788888888888877     1       4445555433 22


Q ss_pred             eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC-----ceEEEEEccCCCEEEE
Q 037555           95 AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR-----IIWSCSWNPFGHEFAT  169 (298)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~  169 (298)
                      ....+ .|...|.+++|+|+|++||+++.||.|++||...         .+..+. |..     .|.+++|+|+|++|++
T Consensus        78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence            22333 4688999999999999999999999999999542         444555 554     4999999999999999


Q ss_pred             eeCCCeEEEEEccCCccee----eeeec----CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          170 GSRDKTVKIWAVENKSSVK----QILAL----PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       170 ~~~dg~i~~wd~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      |+.||+|++||+.++....    .+..+    .+|...|.+++|+|+      . +++++.|+.|++|++......    
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g-Laass~D~tVrlWd~~~~~~~----  215 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V-LVAALSNNSVFSMTVSASSHQ----  215 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E-EEEEETTCCEEEECCCSSSSC----
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC------c-EEEEeCCCeEEEEECCCCccc----
Confidence            9999999999999875300    12233    567889999999996      4 888899999999999775311    


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                            .....+.  .+|...|.+++|+  +       ..|++++ +++|++||+.
T Consensus       216 ------~~~~tL~--~~h~~~V~svaFs--g-------~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          216 ------PVSRMIQ--NASRRKITDLKIV--D-------YKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             ------CCEEEEE--CCCSSCCCCEEEE--T-------TEEEEEC-SSEEEEEETT
T ss_pred             ------cceeeec--ccccCcEEEEEEE--C-------CEEEEEe-CCeEEEEECC
Confidence                  0112221  2588899999999  5       5888887 6999999964

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-28  Score=198.90  Aligned_cols=241  Identities=9%  Similarity=0.033  Sum_probs=172.7

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC--------------ceEEe-ccCCCceEE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------------ESHKL-YGHGNELFS   61 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------------~~~~~-~~h~~~v~~   61 (298)
                      ++.++.++..+++.+..+.  ...|..+.+.|.    ++++      .+|.              .+..+ .+|.++|.+
T Consensus        57 Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  130 (343)
T 3lrv_A           57 DGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIY  130 (343)
T ss_dssp             TTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEE
T ss_pred             CCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEE
Confidence            4567778888887776665  344555444432    2222      2331              12233 367789999


Q ss_pred             EEEcC--CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           62 LCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        62 ~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      ++|+|  ++++|++++.     |+.|++||+++++.+.... .|...|.+++|+|++.+|++|+.||.|++||++...  
T Consensus       131 ~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--  203 (343)
T 3lrv_A          131 MYGHNEVNTEYFIWADN-----RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD--  203 (343)
T ss_dssp             EECCC---CCEEEEEET-----TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT--
T ss_pred             EEcCCCCCCCEEEEEeC-----CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC--
Confidence            99999  9999999954     9999999999988866553 356689999999999999999999999999998743  


Q ss_pred             ccceeee-EEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE--EEEEeeccccCCc
Q 037555          139 EIDYQLI-ARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT--ALSWVGLDRQKNH  214 (298)
Q Consensus       139 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~  214 (298)
                           .. ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++.+....+..+..+...+.  +++|+|++     
T Consensus       204 -----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  272 (343)
T 3lrv_A          204 -----QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-----  272 (343)
T ss_dssp             -----SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-----
T ss_pred             -----CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-----
Confidence                 23 45566 999999999999999999999 45999999999877653333222333343  69999998     


Q ss_pred             cEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec---CCCCCCCcceEEEeeeCCCc
Q 037555          215 GFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT---HEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       215 ~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~l~s~~~d~~  290 (298)
                      .+|++++. |+.|++|++......             ..       ..++..+.|.+   +.       ..|++++.|+.
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~-------~~l~~~~~d~~  325 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKN-------------WT-------KDEESALCLQSDTADF-------TDMDVVCGDGG  325 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCS-------------EE-------EEEEEECCC----CCC-------CEEEEEEETTE
T ss_pred             CEEEEecCCCCcEEEEEEcccccc-------------eE-------ecCceeEecCcccccc-------ceeEEEecCCc
Confidence            79999888 999999999754211             11       14566667776   44       56777777777


Q ss_pred             EEEe
Q 037555          291 VRVF  294 (298)
Q Consensus       291 i~iw  294 (298)
                      ++++
T Consensus       326 ~~~~  329 (343)
T 3lrv_A          326 IAAI  329 (343)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=9.7e-28  Score=189.28  Aligned_cols=192  Identities=14%  Similarity=0.115  Sum_probs=148.1

Q ss_pred             eeeeecCccccc-ccCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcC---CCCEEEeEeccCCCCce
Q 037555            8 TVERHGNDGLDT-LESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDH---QGKLVASSCKAQSTAAA   83 (298)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~~~~~~d~   83 (298)
                      .+...+|+.+.+ ..+|...|....+.| .++         .+..+.+|...++.++|++   ++.+|++++     .|+
T Consensus       139 v~~l~~g~lv~ss~~g~d~~V~~~~~s~-dG~---------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS-----~D~  203 (356)
T 2w18_A          139 VLGLTKRRLVSSSGTLSDQQVEVMTFAE-DGG---------GKENQFLMPPEETILTFAEVQGMQEALLGTT-----IMN  203 (356)
T ss_dssp             EEEETTTEEEEEESSSTTCEEEEEEECT-TSC---------EEEEEEECCCSSCEEEEEEEETSTTEEEEEE-----TTS
T ss_pred             EEecCCCcEEEecccCCCCcEEEEEECC-CCc---------eeeeeccCCCceeeEEeeccCCCCceEEEec-----CCC
Confidence            344556666666 578888998888873 343         4566778999999999999   779999995     499


Q ss_pred             EEEEEEcCCceeeecccccc---ccEEEEEEcCCCCEE------------EEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555           84 EIWLWEVGSWKAMGRLQSHS---LTVTQIRFSHDDNLL------------LSVSRDRQFSVFAIQRTGTGEIDYQLIARQ  148 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (298)
                      +|+|||+.+++.+.++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..+       ...+..+
T Consensus       204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-------gk~l~v~  276 (356)
T 2w18_A          204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-------TLSVGVM  276 (356)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-------TEEEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-------CEEEEEE
Confidence            99999999999999997643   467788999999876            5678899999999886       3333332


Q ss_pred             -----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE-EEEEeeccccCCccEEEEeec
Q 037555          149 -----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT-ALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       149 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~~g~~  222 (298)
                           .+|...+.+..+  ++.++++++.|++|++||+.+++.+.   ++.+|...+. +++|+|++     .+|++|+.
T Consensus       277 ~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~---tL~gH~~~vvs~vafSPDG-----~~LaSGS~  346 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTA---LLPPVSDQHWSFVKWSGTD-----SHLLAGQK  346 (356)
T ss_dssp             EECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEE---EECCC--CCCCEEEECSSS-----SEEEEECT
T ss_pred             EeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEE---EecCCCCCeEEEEEECCCC-----CEEEEEEC
Confidence                 245554444444  37899999999999999999999887   6667776554 68999999     79999999


Q ss_pred             CCcEEEEEe
Q 037555          223 SGVIELWSI  231 (298)
Q Consensus       223 dg~i~vwd~  231 (298)
                      |++|+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.1e-26  Score=190.47  Aligned_cols=246  Identities=12%  Similarity=0.101  Sum_probs=189.5

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccc-ccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQL-AWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      ++.++.++..+++.+..+..|.. +.++.+.| .+..+ +..      .+|+     .+..+..+ ..+.+++|+|++++
T Consensus        11 d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~   87 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPVGSN-PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQ   87 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSS-EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred             CCEEEEEECCCCeEEEEeecCCC-cceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCE
Confidence            56778888899999998888764 78888884 45443 332      3443     24444444 48999999999998


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      |++++    ..++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+..       .+....+.
T Consensus        88 l~~~~----~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------~~~~~~~~  155 (391)
T 1l0q_A           88 VYVTN----MASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-------KAVINTVS  155 (391)
T ss_dssp             EEEEE----TTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------TEEEEEEE
T ss_pred             EEEEE----CCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-------CcEEEEEe
Confidence            87665    3479999999999988877774 4568999999999977 6788899999999986       44555555


Q ss_pred             ccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCc
Q 037555          150 AHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGV  225 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~  225 (298)
                      .+ ..+..++|+|+++++ ++++.++.|++||+++++...   .+. +...+.+++|+|++     .++++++   .++.
T Consensus       156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~~~~g-----~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID---TVK-VEAAPSGIAVNPEG-----TKAYVTNVDKYFNT  225 (391)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSEEEEEEECTTS-----SEEEEEEECSSCCE
T ss_pred             cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE---EEe-cCCCccceEECCCC-----CEEEEEecCcCCCc
Confidence            44 456999999999877 567788999999999887665   332 45678999999998     6777777   6899


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                      |++||+.++             +.+..+.   .| ..+.+++|+|++       .+| ++++.|+.|++||+.
T Consensus       226 v~~~d~~~~-------------~~~~~~~---~~-~~~~~~~~s~dg-------~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          226 VSMIDTGTN-------------KITARIP---VG-PDPAGIAVTPDG-------KKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEEEETTTT-------------EEEEEEE---CC-SSEEEEEECTTS-------SEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCC-------------eEEEEEe---cC-CCccEEEEccCC-------CEEEEEcCCCCEEEEEECC
Confidence            999999876             4444443   23 347899999998       555 788899999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2.9e-28  Score=201.82  Aligned_cols=220  Identities=11%  Similarity=0.121  Sum_probs=142.1

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-----eeccccccccEEEEEEcC--------CCCEEEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSHSLTVTQIRFSH--------DDNLLLSV  121 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~  121 (298)
                      |...+....+++++.+|++++     .|++|+|||+++++.     +..+.+|...|.+++|+|        |+++|+++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             ---------CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             cCCCcceeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            333344444455667889995     499999999987754     345789999999999998        78899999


Q ss_pred             eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeee----------
Q 037555          122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQI----------  190 (298)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~----------  190 (298)
                      +.|++|+|||+..       ......+..|...|.+++|+|++ ++|++++.|+.|++||+++++.....          
T Consensus       163 s~D~tv~~Wd~~~-------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          163 GDDCTLIIWRLTD-------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             ETTSEEEEEEEET-------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             ECCCeEEEEECCC-------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            9999999999986       45566677889999999999987 58999999999999999876543211          


Q ss_pred             ------------eecCCCCCceEEEEEe-eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee---eeec
Q 037555          191 ------------LALPPFNSSVTALSWV-GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII---IRFD  254 (298)
Q Consensus       191 ------------~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~  254 (298)
                                  ....+|...+.++.|. |++     ..|++++.|+.+++||+...................   ....
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTT-----CEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             EEecccccceeeeecccccccceeeeeecCCC-----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                        0123566778889987 566     799999999999999998764322111000000000   0000


Q ss_pred             cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ....+.. .....|+|..     ++.++++++.||+|++||+.
T Consensus       311 ~~~~~~~-~~~~~~~~~~-----~~~~~~sgs~Dg~V~lwd~~  347 (393)
T 4gq1_A          311 GISLFPS-LLGACPHPRY-----MDYFATAHSQHGLIQLINTY  347 (393)
T ss_dssp             EECSSCC-SSCCEECSSC-----TTEEEEEETTTTEEEEEETT
T ss_pred             cccccCc-ceeEEEccCC-----CCEEEEEECCCCEEEEEECC
Confidence            0011111 2223333322     22677888999999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3e-26  Score=192.02  Aligned_cols=247  Identities=9%  Similarity=0.084  Sum_probs=192.3

Q ss_pred             cccceeeeecCcccc-----cccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCC
Q 037555            4 ATRETVERHGNDGLD-----TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQ   67 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~   67 (298)
                      ..++.++..+|+.+.     .+.+|...|..+.+. +.+..+++.      .+|+     .+..+..|...+.+++|+|+
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  222 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI  222 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence            346777777787776     667889999999885 555555544      3443     45677789999999999999


Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe--------CCCeEEEEEeccCCCCc
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS--------RDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~  139 (298)
                      ++.+++++    ..++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+..     
T Consensus       223 ~~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-----  292 (433)
T 3bws_A          223 RDLVYCSN----WISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-----  292 (433)
T ss_dssp             TTEEEEEE----TTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-----
T ss_pred             CCEEEEEe----cCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-----
Confidence            99886654    35899999999999888877754 4589999999999999888        488999999986     


Q ss_pred             cceeeeEEeeccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA  218 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  218 (298)
                        .+..... .+...+..++|+|+++.+ ++++.|+.|++||+++++...   .+. +...+.+++|+|++     .+++
T Consensus       293 --~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~---~~~-~~~~~~~~~~s~dg-----~~l~  360 (433)
T 3bws_A          293 --EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK---SIP-VFDKPNTIALSPDG-----KYLY  360 (433)
T ss_dssp             --TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTS-----SEEE
T ss_pred             --CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE---Eec-CCCCCCeEEEcCCC-----CEEE
Confidence              3333333 455678999999999755 666889999999999877665   333 56778999999998     6777


Q ss_pred             Eeec---------------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555          219 VGME---------------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       219 ~g~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      +++.               ||.|++||+.++             +....+.    +...+.+++|+|++       .+|+
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~  416 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-------------TVKEFWE----AGNQPTGLDVSPDN-------RYLV  416 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTT-------------EEEEEEE----CSSSEEEEEECTTS-------CEEE
T ss_pred             EEecCCCccccccccccccceEEEEEECCCC-------------cEEEEec----CCCCCceEEEcCCC-------CEEE
Confidence            7765               579999999876             4444443    24578999999999       7877


Q ss_pred             eee-CCCcEEEeEec
Q 037555          284 SCG-ADNTVRVFQVN  297 (298)
Q Consensus       284 s~~-~d~~i~iw~~~  297 (298)
                      +++ .|+.|++|+++
T Consensus       417 ~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          417 ISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEETTTTEEEEEEET
T ss_pred             EEECCCCeEEEEEec
Confidence            776 49999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=2.9e-25  Score=178.31  Aligned_cols=205  Identities=20%  Similarity=0.371  Sum_probs=167.0

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      +.+|...|++++|+|++++|++|+.     |+.|++|++++++.+..+.+|...+.++.+  ++..+++++.++.+++|+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~-----Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD  135 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence            3478889999999999999999954     999999999999999999999998877655  567999999999999999


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ....      ...+..+..|...+..+.+.+++++|++++.|+.|++||+++++... .......+...|.+++++|.+.
T Consensus       136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  209 (318)
T 4ggc_A          136 VRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS  209 (318)
T ss_dssp             TTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred             cCCC------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence            8764      34567778899999999999999999999999999999998765432 1123445778899999999873


Q ss_pred             cCCccEE--EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee--e
Q 037555          211 QKNHGFL--AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC--G  286 (298)
Q Consensus       211 ~~~~~~l--~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--~  286 (298)
                          ..+  ++++.++.|++||.+..             ......    .+...+..+.|+|++       ..++++  +
T Consensus       210 ----~~~~~~~~~~~~~i~lwd~~~~-------------~~~~~~----~~~~~v~~~~~~~~~-------~~~~~~sg~  261 (318)
T 4ggc_A          210 ----NVLATGGGTSDRHIRIWNVCSG-------------ACLSAV----DAHSQVCSILWSPHY-------KELISGHGF  261 (318)
T ss_dssp             ----TEEEEEECTTTCEEEEEETTTC-------------CEEEEE----ECSSCEEEEEEETTT-------TEEEEEECT
T ss_pred             ----cEEEEEecCCCCEEEEEecccc-------------cccccc----cceeeeeeeeecccc-------cceEEEEEc
Confidence                443  45678899999998765             333322    367789999999998       555544  4


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      .|+.|++||++
T Consensus       262 ~d~~i~iwd~~  272 (318)
T 4ggc_A          262 AQNQLVIWKYP  272 (318)
T ss_dssp             TTCCEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            79999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2.7e-25  Score=186.21  Aligned_cols=234  Identities=9%  Similarity=0.027  Sum_probs=178.6

Q ss_pred             cccccCCCCCceeeeccCCCccccccc------CCCC-----ceE-----EeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555           17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESH-----KLYGHGNELFSLCCDHQGKLVASSCKAQST   80 (298)
Q Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~-----~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~   80 (298)
                      +..+..+. .+.++.+.| .+..++..      .+|+     ...     .+.+|...|.+++|+++++++++++     
T Consensus       116 ~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-----  188 (433)
T 3bws_A          116 ISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM-----  188 (433)
T ss_dssp             EEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-----
T ss_pred             EEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-----
Confidence            33444433 345677775 55444443      2342     122     3447889999999999999999994     


Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      .|+.|++||+++++.+..+..|...+.+++|+|+++.++++ +.|+.|++||+..       ...+..+.. ...+.+++
T Consensus       189 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-------~~~~~~~~~-~~~~~~~~  260 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-------KLEIRKTDK-IGLPRGLL  260 (433)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-------TEEEEECCC-CSEEEEEE
T ss_pred             CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-------CcEEEEecC-CCCceEEE
Confidence            48999999999999888888899999999999999988554 4799999999986       444555444 45689999


Q ss_pred             EccCCCEEEEee--------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          160 WNPFGHEFATGS--------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       160 ~~~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      |+|+++++++++        .|+.|++||+++++....   + .+...+.+++|+|++.    .++++++.++.|++||+
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~---~-~~~~~~~~~~~~~~g~----~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT---I-GPPGNKRHIVSGNTEN----KIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE---E-EEEECEEEEEECSSTT----EEEEEETTTTEEEEEET
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee---c-cCCCCcceEEECCCCC----EEEEEecCCCEEEEEEC
Confidence            999999999888        588999999998776552   2 2456789999999883    46677789999999999


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC---------------CCcEEEeEe
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA---------------DNTVRVFQV  296 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---------------d~~i~iw~~  296 (298)
                      .++             +....+.    +...+.+++|+|++       .+|++++.               ||.|++||+
T Consensus       333 ~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          333 KEK-------------KVQKSIP----VFDKPNTIALSPDG-------KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             TTT-------------EEEEEEE----CSSSEEEEEECTTS-------SEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             CCC-------------cEEEEec----CCCCCCeEEEcCCC-------CEEEEEecCCCccccccccccccceEEEEEEC
Confidence            865             4444432    56778999999999       77777765               579999997


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       389 ~  389 (433)
T 3bws_A          389 T  389 (433)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=2.9e-24  Score=177.59  Aligned_cols=203  Identities=13%  Similarity=0.122  Sum_probs=159.1

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~  126 (298)
                      .+..+..|. .+.+++|+|++++|++++    ..++.|++||+.+++.+..+..+. .+.+++|+|++++|+++ +.++.
T Consensus        24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~----~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~   97 (391)
T 1l0q_A           24 VTATIPVGS-NPMGAVISPDGTKVYVAN----AHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST   97 (391)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEE----GGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEeecCC-CcceEEECCCCCEEEEEC----CCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence            345555554 589999999999875443    348999999999999888887554 89999999999977554 56799


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      |++||+..       .+.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++...   .+. ....+.+++|
T Consensus        98 v~v~d~~~-------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~  165 (391)
T 1l0q_A           98 LSVIDTTS-------NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVS-VGRSPKGIAV  165 (391)
T ss_dssp             EEEEETTT-------TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CCSSEEEEEE
T ss_pred             EEEEECCC-------CeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEe-cCCCcceEEE
Confidence            99999986       444555544 4568999999999877 677889999999999887765   333 2355799999


Q ss_pred             eeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          206 VGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       206 ~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      +|++     ..+ ++++.++.|++||+++.             .....+.    +...+.+++|+|++       .+|++
T Consensus       166 ~~dg-----~~l~~~~~~~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~~~~g-------~~l~~  216 (391)
T 1l0q_A          166 TPDG-----TKVYVANFDSMSISVIDTVTN-------------SVIDTVK----VEAAPSGIAVNPEG-------TKAYV  216 (391)
T ss_dssp             CTTS-----SEEEEEETTTTEEEEEETTTT-------------EEEEEEE----CSSEEEEEEECTTS-------SEEEE
T ss_pred             CCCC-----CEEEEEeCCCCEEEEEECCCC-------------eEEEEEe----cCCCccceEECCCC-------CEEEE
Confidence            9998     455 67788999999999876             4444432    45688999999999       77777


Q ss_pred             ee---CCCcEEEeEec
Q 037555          285 CG---ADNTVRVFQVN  297 (298)
Q Consensus       285 ~~---~d~~i~iw~~~  297 (298)
                      ++   .++.|++||++
T Consensus       217 ~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          217 TNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEECSSCCEEEEEETT
T ss_pred             EecCcCCCcEEEEECC
Confidence            77   68999999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=6.6e-24  Score=176.72  Aligned_cols=248  Identities=10%  Similarity=0.045  Sum_probs=181.4

Q ss_pred             ccceeee--ecCccc--ccccCCCCCceeeeccCC-------------Cccccc------------ccCCC----CceEE
Q 037555            5 TRETVER--HGNDGL--DTLESVPDAVPAVFTEPP-------------IEDQLA------------WHTLW----PESHK   51 (298)
Q Consensus         5 ~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~-------------~~~~~~------------~~~~~----~~~~~   51 (298)
                      .++.++.  .+|+.+  ..+.+|...+..+.+.+.             .+..++            ...+|    ...+.
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~  173 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV  173 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE
Confidence            5678888  888877  447777766654443320             011111            11233    24677


Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCe--EE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQ--FS  128 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~  128 (298)
                      +.+|...|.+++|+|+|+.|++++.+.  .+..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++.  |+
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            888999999999999999999997531  1359999999988765 4666888999999999999877 6666654  88


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      +||+...       . ...+..|...+.+++|+|++++|++++. ++  .|.+||+.+++..    .+..+...+.+++|
T Consensus       251 ~~d~~~~-------~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          251 VMDLASG-------Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADV  318 (415)
T ss_dssp             EEETTTC-------C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEE
T ss_pred             EEECCCC-------C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE----EEecCCCcccCeEE
Confidence            9998752       2 3456678888999999999999998886 44  6788898876542    34446678899999


Q ss_pred             eeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555          206 VGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL  282 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  282 (298)
                      +|++     .+|++++.+   ..|++||+.++             .. ..   +..+. .+.+++|+|++       .+|
T Consensus       319 spdG-----~~l~~~~~~~g~~~i~~~d~~~~-------------~~-~~---l~~~~-~~~~~~~spdg-------~~l  368 (415)
T 2hqs_A          319 SSDG-----KFMVMVSSNGGQQHIAKQDLATG-------------GV-QV---LSSTF-LDETPSLAPNG-------TMV  368 (415)
T ss_dssp             CTTS-----SEEEEEEECSSCEEEEEEETTTC-------------CE-EE---CCCSS-SCEEEEECTTS-------SEE
T ss_pred             CCCC-----CEEEEEECcCCceEEEEEECCCC-------------CE-EE---ecCCC-CcCCeEEcCCC-------CEE
Confidence            9999     677777654   58999999765             22 22   22343 78999999999       788


Q ss_pred             EeeeCCC---cEEEeEec
Q 037555          283 ASCGADN---TVRVFQVN  297 (298)
Q Consensus       283 ~s~~~d~---~i~iw~~~  297 (298)
                      ++++.++   .|++||++
T Consensus       369 ~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEEEEETTEEEEEEEETT
T ss_pred             EEEEcCCCccEEEEEECC
Confidence            8888776   78888864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=4.8e-24  Score=178.24  Aligned_cols=207  Identities=16%  Similarity=0.163  Sum_probs=151.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----------eec-----cccccccEEEEEEcCCCCEEE-
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----------MGR-----LQSHSLTVTQIRFSHDDNLLL-  119 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----------~~~-----~~~~~~~v~~~~~~~~~~~l~-  119 (298)
                      ...+..+++++++.++++++.     ++ +++|+......          +..     ...+...|.+++|+|++++|+ 
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~-----dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGA-----SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEET-----TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCCEEEEECC-----CE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            346889999999999999854     66 88887642111          000     012456799999999999999 


Q ss_pred             ---EEeCCCeEEEEEeccCCCCc----cceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555          120 ---SVSRDRQFSVFAIQRTGTGE----IDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQIL  191 (298)
Q Consensus       120 ---~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~  191 (298)
                         +++.|+.|++||+.......    ........+.+|...|.+++|+|+ +++|++++.||+|++||+++.....   
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~---  186 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC---  186 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE---
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee---
Confidence               78889999999997631000    001234556678999999999997 7899999999999999999875443   


Q ss_pred             ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc----CCcccceEEEEE
Q 037555          192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----FACHVAAVNRMA  267 (298)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~  267 (298)
                      ....|...|.+++|+|++     .+|++|+.||.|++||.+ +             .....+..    ...|...|.+++
T Consensus       187 ~~~~~~~~v~~v~wspdg-----~~lasgs~dg~v~iwd~~-~-------------~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPKG-----KQLAVGKQNGTVVQYLPT-L-------------QEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             EEECGGGCEEEEEECTTS-----SCEEEEETTSCEEEECTT-C-------------CEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             eccCCCCceeEEEEcCCC-----CEEEEEcCCCcEEEEccC-C-------------cccccccCCcccCCCCceeEEEEE
Confidence            334578899999999998     799999999999999987 2             11111110    113456899999


Q ss_pred             eecCCCCCCCcceEEEe-eeCCCc------EEEeEec
Q 037555          268 WKTHEKPKNSRTMQLAS-CGADNT------VRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s-~~~d~~------i~iw~~~  297 (298)
                      |++++       .++++ ...||.      +++|+++
T Consensus       248 w~~~~-------~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          248 WIGTY-------VFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EEETT-------EEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             EecCc-------eEEEEEccCCCccCCCCceEEEEec
Confidence            99988       66644 334433      8899874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=3.3e-22  Score=167.17  Aligned_cols=163  Identities=16%  Similarity=0.235  Sum_probs=126.8

Q ss_pred             cCCCceEEEEEcCCCCEEE----eEeccCCCCceEEEEEEcCCc--------ee---eeccccccccEEEEEEcCC-CCE
Q 037555           54 GHGNELFSLCCDHQGKLVA----SSCKAQSTAAAEIWLWEVGSW--------KA---MGRLQSHSLTVTQIRFSHD-DNL  117 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~----~~~~~~~~~d~~i~vw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~  117 (298)
                      .+...|++++|+|++++|+    ++     +.|+.|+|||+.++        +.   +..+.+|...|.+++|+|+ +++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sg-----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSS-----EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEET-----TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEecc-----CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence            3567899999999999999    55     45999999998765        21   3556779999999999997 789


Q ss_pred             EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC---
Q 037555          118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP---  194 (298)
Q Consensus       118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---  194 (298)
                      |++++.||+|++||++.       .........|...|.+++|+|++++|++|+.||.|++||++ ++....+....   
T Consensus       165 las~s~Dg~v~iwD~~~-------~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~  236 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTE-------TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE  236 (434)
T ss_dssp             EEEEETTSCEEEEEESS-------SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred             EEEEECCCeEEEEEcCC-------CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence            99999999999999987       33344556688899999999999999999999999999998 44333221111   


Q ss_pred             -CCCCceEEEEEeeccccCCccEEEE-eecCC------cEEEEEeeec
Q 037555          195 -PFNSSVTALSWVGLDRQKNHGFLAV-GMESG------VIELWSISVN  234 (298)
Q Consensus       195 -~~~~~v~~~~~~~~~~~~~~~~l~~-g~~dg------~i~vwd~~~~  234 (298)
                       .|...+.+++|++++     .++++ ...+|      .+++|+++..
T Consensus       237 ~~~~~~v~~v~w~~~~-----~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTY-----VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEEEEEEEETT-----EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCceeEEEEEEecCc-----eEEEEEccCCCccCCCCceEEEEeccC
Confidence             123479999999977     45543 33443      3899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=7e-22  Score=164.54  Aligned_cols=228  Identities=12%  Similarity=0.046  Sum_probs=170.4

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc---------CCCC----ceEEeccCCCceEEEEEcCCCCE
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH---------TLWP----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      ..++.++.. |..+..+.+|...+..+.++ |+++.++..         .+|+    ....+..|...+.+++|+|+|+.
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence            345556655 55678888899999999999 556655543         2332    34567788899999999999998


Q ss_pred             EE-eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC--eEEEEEeccCCCCccceeeeE
Q 037555           71 VA-SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR--QFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        71 l~-~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      |+ +++.   ..+..|++||+.+++. ..+..|...+.+++|+|||+.|+.++. ++  .|.+||+....        ..
T Consensus       237 la~~~~~---~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--------~~  304 (415)
T 2hqs_A          237 LAFALSK---TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--------PQ  304 (415)
T ss_dssp             EEEEECT---TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--------CE
T ss_pred             EEEEEec---CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--------EE
Confidence            88 4533   2245799999988765 456678889999999999998888876 45  56677776521        23


Q ss_pred             EeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555          147 RQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES  223 (298)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d  223 (298)
                      .+..+...+..++|+|++++|++++.+   ..|++||+.+++..    .+..+. .+.+++|+|++     .+|++++.+
T Consensus       305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~----~l~~~~-~~~~~~~spdg-----~~l~~~s~~  374 (415)
T 2hqs_A          305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLSSTF-LDETPSLAPNG-----TMVIYSSSQ  374 (415)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----ECCCSS-SCEEEEECTTS-----SEEEEEEEE
T ss_pred             EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE----EecCCC-CcCCeEEcCCC-----CEEEEEEcC
Confidence            344566788999999999999988764   58999999987653    344343 88999999999     678777766


Q ss_pred             C---cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          224 G---VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       224 g---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      +   .|++||+...              ....   +..|.+.|.+++|+|..
T Consensus       375 ~~~~~l~~~d~~g~--------------~~~~---l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          375 GMGSVLNLVSTDGR--------------FKAR---LPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTEEEEEEEETTSC--------------CEEE---CCCSSSEEEEEEECCCC
T ss_pred             CCccEEEEEECCCC--------------cEEE---eeCCCCCCcCCcccccc
Confidence            6   7999998643              2233   45688999999999965

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=9.6e-22  Score=155.81  Aligned_cols=207  Identities=11%  Similarity=0.128  Sum_probs=154.3

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc-cccEEEEEEcCCCCEEEEEe--C
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH-SLTVTQIRFSHDDNLLLSVS--R  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~  123 (298)
                      ....+..|...|.+++|+|++++|++++      ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++  .
T Consensus        33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  106 (297)
T 2ojh_A           33 KMRVVWQTPELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE  106 (297)
T ss_dssp             EEEEEEEESSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred             ceeeeccCCcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC
Confidence            3556677899999999999999999984      67999999998 7776666555 46789999999999999998  4


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCC-cceeeeeecCCCCCceE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENK-SSVKQILALPPFNSSVT  201 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~  201 (298)
                      ++...+|.++...     . ....+..+ ..+..++|+|+++.|+ ++..++.+++|+++.. ....   .+..+...+.
T Consensus       107 ~~~~~l~~~~~~~-----~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~  176 (297)
T 2ojh_A          107 FGKSAIYLLPSTG-----G-TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRND  176 (297)
T ss_dssp             TSSCEEEEEETTC-----C-CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEE
T ss_pred             CCcceEEEEECCC-----C-ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccc
Confidence            4566677665322     1 12333333 3488899999999877 6778999999987532 2222   4555778899


Q ss_pred             EEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555          202 ALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      +++|+|++     .+|+.++ .++.+++|++....            .....   +..|...+..++|+|++       .
T Consensus       177 ~~~~s~dg-----~~l~~~~~~~~~~~i~~~~~~~------------~~~~~---~~~~~~~~~~~~~s~dg-------~  229 (297)
T 2ojh_A          177 GPDYSPDG-----RWIYFNSSRTGQMQIWRVRVDG------------SSVER---ITDSAYGDWFPHPSPSG-------D  229 (297)
T ss_dssp             EEEECTTS-----SEEEEEECTTSSCEEEEEETTS------------SCEEE---CCCCSEEEEEEEECTTS-------S
T ss_pred             cceECCCC-----CEEEEEecCCCCccEEEECCCC------------CCcEE---EecCCcccCCeEECCCC-------C
Confidence            99999998     5666555 58999999987321            22233   34577889999999999       7


Q ss_pred             EEEeeeCC-----------CcEEEeEec
Q 037555          281 QLASCGAD-----------NTVRVFQVN  297 (298)
Q Consensus       281 ~l~s~~~d-----------~~i~iw~~~  297 (298)
                      +|++++.+           +.|++||++
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecC
Confidence            88877765           568999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3.5e-22  Score=158.33  Aligned_cols=247  Identities=14%  Similarity=0.054  Sum_probs=171.9

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCC------ceEEeccC-CCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP------ESHKLYGH-GNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~h-~~~v~~~~~s~~~~~   70 (298)
                      +..+..++..+++.. .+..|...+..+.++ |.+..++..     .+|+      ....+.+| ...|.+++|+|++++
T Consensus        21 ~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~s-pdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR-VVWQTPELFEAPNWS-PDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CEEEEEEETTTTEEE-EEEEESSCCEEEEEC-TTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             ceeEEEEeCCCCcee-eeccCCcceEeeEEC-CCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            345666777776655 556688899999999 556555544     1221      22223344 367899999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      |++++.+. .....|.+++..+++ ...+..+ ..+..++|+|+++.|+ +++.++.+++|+++...      .....+.
T Consensus        99 l~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------~~~~~~~  169 (297)
T 2ojh_A           99 YAISDKVE-FGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------GVETRLT  169 (297)
T ss_dssp             EEEEECTT-TSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT------CCEEECC
T ss_pred             EEEEEeCC-CCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC------CcceEcc
Confidence            99997411 123556666666554 3334433 3488999999999877 78889999999986432      2234556


Q ss_pred             ccCCceEEEEEccCCCEEEEee-CCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC----
Q 037555          150 AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES----  223 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d----  223 (298)
                      .+...+.+++|+|++++|++++ .++.+++|++. ......   .+..+...+.+++|+|++     .+|++++.+    
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~  241 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSG-----DKVVFVSYDADVF  241 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTS-----SEEEEEEEETTCC
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCC-----CEEEEEEcCCCCC
Confidence            6778899999999999888766 58999999987 344444   555677789999999998     677777655    


Q ss_pred             -------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          224 -------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       224 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                             +.|++||+.+++.           ..+..   +.+|...+..++|+|++       .+|++++.|.
T Consensus       242 ~~~~~~~~~l~~~d~~~~~~-----------~~~~~---~~~~~~~~~~~~~spdg-------~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDGGNV-----------ETLFD---LFGGQGTMNSPNWSPDG-------DEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTSCSC-----------EEEEE---EEESTTTSCSCCBCTTS-------SEEEEEEECC
T ss_pred             cccccCceEEEEEecCCCCc-----------eeeec---cCCCCcccccceECCCC-------CEEEEEEecc
Confidence                   5699999876521           11222   23577789999999999       7777776553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=4.4e-21  Score=154.93  Aligned_cols=261  Identities=11%  Similarity=0.053  Sum_probs=171.6

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-C------CC-----Cc-eEEeccCCCceEEEEEcCCCC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-T------LW-----PE-SHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------~~-----~~-~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      +..+..++..+++.+..+..+.... .+.++ |.+..+... .      +|     .. ...+..+..+..+++|+|+|+
T Consensus        19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           19 LRRISFFSTDTLEILNQITLGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ   96 (331)
T ss_dssp             GTEEEEEETTTCCEEEEEECCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             CCeEEEEeCcccceeeeEEccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence            3456777888888888777665556 88888 444433222 1      12     12 555556666666699999999


Q ss_pred             EEEeEeccCCCCce--EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCe-EEEEEeccCCCCccceeee
Q 037555           70 LVASSCKAQSTAAA--EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQ-FSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        70 ~l~~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~~~~~~~  145 (298)
                      +|+++..    .++  .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. |.+|++........ ..  
T Consensus        97 ~l~~~~~----~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~-~~--  168 (331)
T 3u4y_A           97 FAVTVTG----LNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD-TG--  168 (331)
T ss_dssp             EEEECCC----SSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE-EE--
T ss_pred             EEEEecC----CCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee-cC--
Confidence            9995422    123  999999999988877664 3456899999999855554 55578 99999875321100 11  


Q ss_pred             EEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecC
Q 037555          146 ARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MES  223 (298)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~d  223 (298)
                      ............++|+|+++++++++ .++.|++||+.+++....+..+. ....+..++|+|++     .+++++ ..+
T Consensus       169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg-----~~l~v~~~~~  242 (331)
T 3u4y_A          169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDG-----STVYVLTEST  242 (331)
T ss_dssp             EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTS-----SEEEEECSSE
T ss_pred             CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCC-----CEEEEEEcCC
Confidence            12223445678999999998665554 68999999999888722222443 34667899999998     555544 457


Q ss_pred             CcEEEEEeeecccccccCCCCCCcceeeeecc-C---CcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555          224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDP-F---ACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                      +.|.+||+.+++..           .+..+.. .   .........++|+|++       .+| +++..++.|.+||+.
T Consensus       243 ~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg-------~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          243 VDVFNFNQLSGTLS-----------FVKSFGHGLLIDPRPLFGANQMALNKTE-------TKLFISANISRELKVFTIS  303 (331)
T ss_dssp             EEEEEEETTTTEEE-----------EEEEEECCCCCCCGGGTTCCCEEECTTS-------SEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCcee-----------eecccccccccCCCCcccccceEECCCC-------CEEEEecCCCCcEEEEEec
Confidence            88999999775321           1111110 0   1111223568999999       555 555567799999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=7.4e-20  Score=148.21  Aligned_cols=258  Identities=12%  Similarity=0.117  Sum_probs=163.2

Q ss_pred             cccceeeee-cCcc-cccccCCCCCceeeeccCCCccccccc-------CCCC---------ceEEeccCCCceEEEEEc
Q 037555            4 ATRETVERH-GNDG-LDTLESVPDAVPAVFTEPPIEDQLAWH-------TLWP---------ESHKLYGHGNELFSLCCD   65 (298)
Q Consensus         4 ~~~~~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~---------~~~~~~~h~~~v~~~~~s   65 (298)
                      ..++.++.. +|+. ......+...+..+.++| .+..++..       .+|.         .+..+..+. .+..++|+
T Consensus        15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s   92 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTD   92 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEEC
T ss_pred             CeEEEEEECCCCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEc
Confidence            345555553 2321 122234556677778874 44433332       1221         122333333 78899999


Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEc---CCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccc
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEV---GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  141 (298)
                      |++++|++++.    .++.|.+|++   ...+.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.....    
T Consensus        93 ~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----  163 (343)
T 1ri6_A           93 HQGQFVFVGSY----NAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH----  163 (343)
T ss_dssp             TTSSEEEEEET----TTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC----
T ss_pred             CCCCEEEEEec----CCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc----
Confidence            99998877753    4789999999   44445555553 34588999999999888877 899999999975221    


Q ss_pred             eeeeE--Eee-ccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC--Ccc--eeeeeecCCC---CCceEEEEEeeccc
Q 037555          142 YQLIA--RQE-AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN--KSS--VKQILALPPF---NSSVTALSWVGLDR  210 (298)
Q Consensus       142 ~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~--~~~--~~~~~~~~~~---~~~v~~~~~~~~~~  210 (298)
                      .....  ... .....+..++|+|+++++++++ .++.|.+||+..  ++.  ......+...   ...+..++|+|++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-  242 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG-  242 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS-
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC-
Confidence            11111  222 2345788899999999776555 789999999954  322  2222122211   2356789999998 


Q ss_pred             cCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CC
Q 037555          211 QKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-AD  288 (298)
Q Consensus       211 ~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d  288 (298)
                          .+|+ ++..++.|.+|++......         ...+..+.   .+.. +..++|+|++       .+|++++ .+
T Consensus       243 ----~~l~v~~~~~~~i~v~d~~~~~~~---------~~~~~~~~---~~~~-~~~~~~s~dg-------~~l~~~~~~~  298 (343)
T 1ri6_A          243 ----RHLYACDRTASLITVFSVSEDGSV---------LSKEGFQP---TETQ-PRGFNVDHSG-------KYLIAAGQKS  298 (343)
T ss_dssp             ----SEEEEEETTTTEEEEEEECTTSCC---------EEEEEEEE---CSSS-CCCEEECTTS-------SEEEEECTTT
T ss_pred             ----CEEEEEecCCCEEEEEEEcCCCCc---------eEEeeeec---CCCc-cceEEECCCC-------CEEEEecCCC
Confidence                5555 5557899999999731100         02222222   2333 8899999999       6666666 68


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      +.|.+|+++
T Consensus       299 ~~v~v~~~d  307 (343)
T 1ri6_A          299 HHISVYEIV  307 (343)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEc
Confidence            999999764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3.6e-20  Score=150.02  Aligned_cols=213  Identities=9%  Similarity=0.098  Sum_probs=146.6

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--Cce--eeeccccccccEEEEEEcCCCCEEEEEeC-CCeEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFS  128 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  128 (298)
                      .|...+.+++|+|++++|++++.    .++.|.+|++.  +++  .+..+..+. .+..++|+|+++++++++. ++.|.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            57778999999999999988864    24899999997  444  334444333 7889999999998876665 88999


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC-Ccceeee--eecCCCCCceEEEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN-KSSVKQI--LALPPFNSSVTALS  204 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~v~~~~  204 (298)
                      +||+.....    ......+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++.....  .........+..++
T Consensus       110 ~~d~~~~~~----~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
T 1ri6_A          110 VTRLEDGLP----VGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV  184 (343)
T ss_dssp             EEEEETTEE----EEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred             EEECCCCcc----ccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence            999952110    333444433 34588999999999888887 899999999987 4332111  11112345788999


Q ss_pred             EeeccccCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc---ccceEEEEEeecCCCCCCCcce
Q 037555          205 WVGLDRQKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC---HVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       205 ~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      |+|++     .+++ ++..++.|.+|++.......         .....+.....   ....+..++|+|++       .
T Consensus       185 ~~pdg-----~~l~~~~~~~~~i~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~i~~s~dg-------~  243 (343)
T 1ri6_A          185 FHPNE-----QYAYCVNELNSSVDVWELKDPHGNI---------ECVQTLDMMPENFSDTRWAADIHITPDG-------R  243 (343)
T ss_dssp             ECTTS-----SEEEEEETTTTEEEEEESSCTTSCC---------EEEEEEECSCTTCCSCCCEEEEEECTTS-------S
T ss_pred             ECCCC-----CEEEEEeCCCCEEEEEEecCCCCcE---------EEEeeccccCccccccCCccceEECCCC-------C
Confidence            99998     5554 55578999999996421100         11222221111   13467789999998       5


Q ss_pred             EEE-eeeCCCcEEEeEec
Q 037555          281 QLA-SCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l~-s~~~d~~i~iw~~~  297 (298)
                      +|+ ++..++.|++|+++
T Consensus       244 ~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEecCCCEEEEEEEc
Confidence            555 66689999999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.1e-19  Score=147.76  Aligned_cols=213  Identities=8%  Similarity=0.082  Sum_probs=143.3

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC---ceeeecccc---------ccccEEEEEEcCCCCEE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQS---------HSLTVTQIRFSHDDNLL  118 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~~~---------~~~~v~~~~~~~~~~~l  118 (298)
                      .+..+...+..++|+|+|++|++++.    .++.|.+|++..   .+.+..+..         +...+.+++|+|+++++
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~----~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANY----HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEET----TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeC----CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence            33457778899999999999988863    478999999962   233333321         12348899999999966


Q ss_pred             EEEeCCCeEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEe-eCCCeEEEEEccC--CcceeeeeecC
Q 037555          119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVEN--KSSVKQILALP  194 (298)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~--~~~~~~~~~~~  194 (298)
                      ++...++.|.+|++.....    ......... .......++|+|++++++++ ..++.|.+|++..  ++. ..+..+.
T Consensus       156 v~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~  230 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQ----LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVK  230 (347)
T ss_dssp             EEETTTTEEEEEEECTTSC----EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCc----EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeee
Confidence            6666789999999983211    122222222 23357789999999966664 5688999999875  322 1111221


Q ss_pred             CCC------CceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          195 PFN------SSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       195 ~~~------~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      ...      ..+..++|+|++     .+| ++...++.|.+|++......          ..+..   +..+...+..++
T Consensus       231 ~~~~~~~~~~~~~~i~~spdG-----~~l~v~~~~~~~v~v~~~~~~g~~----------~~~~~---~~~~~~~~~~~~  292 (347)
T 3hfq_A          231 TIPADYTAHNGAAAIRLSHDG-----HFLYVSNRGYNTLAVFAVTADGHL----------TLIQQ---ISTEGDFPRDFD  292 (347)
T ss_dssp             SSCTTCCSCCEEEEEEECTTS-----CEEEEEEETTTEEEEEEECGGGCE----------EEEEE---EECSSSCCCEEE
T ss_pred             ecCCCCCCCCcceeEEECCCC-----CEEEEEeCCCCEEEEEEECCCCcE----------EEeEE---EecCCCCcCeEE
Confidence            111      458899999999     555 55666899999999743100          22222   233556688999


Q ss_pred             eecCCCCCCCcceEEEeeeC-CCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGA-DNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~-d~~i~iw~~~  297 (298)
                      |+|++       ++|++++. ++.|.+|+++
T Consensus       293 ~spdg-------~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          293 LDPTE-------AFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ECTTS-------SEEEEEETTTTEEEEEEEC
T ss_pred             ECCCC-------CEEEEEEcCCCcEEEEEEe
Confidence            99999       77777665 5899999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.87  E-value=2.6e-20  Score=159.84  Aligned_cols=260  Identities=9%  Similarity=0.069  Sum_probs=181.9

Q ss_pred             cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcC----
Q 037555            4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDH----   66 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~----   66 (298)
                      ..+..++..+++.+..+..+.. +..+.++ |++..+...      .+|+       .+.++. +...+..++|+|    
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~  235 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGYA-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGY  235 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECSTT-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTC
T ss_pred             CeEEEEECCCceEEEEEecCcc-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCC
Confidence            4566778888988888884333 7788888 555555443      2222       244454 455689999999    


Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----------cc-ccEEEEEEcCCCC-EEEEEeCCCeEEEEEecc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----------HS-LTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  134 (298)
                      +|++|++++.    .+++|.+||..+++++..+..          |. ..+..+.++|++. ++++...++.|.+||+..
T Consensus       236 dg~~l~v~~~----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          236 EDRYTIAGAY----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             TTTEEEEEEE----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             CCCEEEEEEc----cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999863    378999999999988877654          22 2789999999766 556667799999999986


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccC
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  212 (298)
                      ...     ..+..+ .+...+..+.|+|++++|++++ .+++|.+||+.+++....+..-. .|......+ ++|++.  
T Consensus       312 ~~~-----l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g--  382 (543)
T 1nir_A          312 IDN-----LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG--  382 (543)
T ss_dssp             SSS-----CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE--
T ss_pred             CCc-----ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc--
Confidence            432     111232 3456688899999999877655 58999999999988776443211 243333333 466631  


Q ss_pred             CccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-----
Q 037555          213 NHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-----  286 (298)
Q Consensus       213 ~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-----  286 (298)
                        .+++++. .|+.|.+||+.+....      ...++++..+   ..|...+..++++|++       ++|++++     
T Consensus       383 --~~~~s~~~~d~~V~v~d~~~~~~~------~~~~~~v~~l---~~~g~~~~~v~~~pdg-------~~l~v~~~~~~~  444 (543)
T 1nir_A          383 --PVWSTSHLGDGSISLIGTDPKNHP------QYAWKKVAEL---QGQGGGSLFIKTHPKS-------SHLYVDTTFNPD  444 (543)
T ss_dssp             --EEEEEEBSSSSEEEEEECCTTTCT------TTBTSEEEEE---ECSCSCCCCEECCTTC-------CEEEECCTTCSS
T ss_pred             --cEEEeccCCCceEEEEEeCCCCCc------hhcCeEEEEE---EcCCCCceEEEcCCCC-------CcEEEecCCCCC
Confidence              5677765 6899999999863111      0112555554   3577788899999999       7888876     


Q ss_pred             --CCCcEEEeEec
Q 037555          287 --ADNTVRVFQVN  297 (298)
Q Consensus       287 --~d~~i~iw~~~  297 (298)
                        .+++|.+||++
T Consensus       445 ~~~~~~v~v~d~~  457 (543)
T 1nir_A          445 ARISQSVAVFDLK  457 (543)
T ss_dssp             HHHHTCEEEEETT
T ss_pred             cccCceEEEEECC
Confidence              27799999975

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=5.1e-21  Score=170.81  Aligned_cols=249  Identities=12%  Similarity=0.102  Sum_probs=174.4

Q ss_pred             ccceeeeecCcccccccCCCC------------------------CceeeeccCCCccccccc-----CCCC-------c
Q 037555            5 TRETVERHGNDGLDTLESVPD------------------------AVPAVFTEPPIEDQLAWH-----TLWP-------E   48 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~-----~~~~-------~   48 (298)
                      .+..++..+|+....+..+..                        .+..+.++ |+++.++..     .+|+       .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS-PDAQRLLFPLGGELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC-TTSSEEEEEETTEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC-CCCCEEEEEeCCcEEEEECCCCCcce
Confidence            456666777776555554432                        26778888 566655543     2232       4


Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc----------------EEEEEEc
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT----------------VTQIRFS  112 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~----------------v~~~~~~  112 (298)
                      ...+..|...+.+++|+|||++|+.++      ++.|++||+.+++.......+...                +..++|+
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG~~la~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S  217 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKGGFVSFIR------GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA  217 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTSSEEEEEE------TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC
T ss_pred             EEEcccCCcccccccCCCCCCEEEEEe------CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC
Confidence            456677888999999999999999985      468999999988776554433332                4779999


Q ss_pred             CCCCEEEEEeCCC---------------------------------eEEEEEecc-CCCCccceeeeEEeeccCCceEEE
Q 037555          113 HDDNLLLSVSRDR---------------------------------QFSVFAIQR-TGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus       113 ~~~~~l~~~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      |||++|++++.|+                                 .|.+||+.. ...     ..+.....|...+..+
T Consensus       218 pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~~~~~  292 (741)
T 2ecf_A          218 PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-----QWIDLGKEQDIYLARV  292 (741)
T ss_dssp             TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-----EEECCCSCSSEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-----EEecCCCCcceEEEEE
Confidence            9999999987765                                 788888765 321     1111111467789999


Q ss_pred             EEccCCCEEEEeeC-----CCeEEEEEccCCcceeeeeecCCCCC----ceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555          159 SWNPFGHEFATGSR-----DKTVKIWAVENKSSVKQILALPPFNS----SVTALSWVGLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       159 ~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      +| |++++|++++.     +..|++||+.+++....+.   .+..    .+..++|+|++     .++++++.+|.++||
T Consensus       293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~spdg-----~~~~~~~~~g~~~l~  363 (741)
T 2ecf_A          293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVPLHNSLRFLDDG-----SILWSSERTGFQHLY  363 (741)
T ss_dssp             EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCCCCSCCEECTTS-----CEEEEECTTSSCEEE
T ss_pred             Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCCcCCceEECCCC-----eEEEEecCCCccEEE
Confidence            99 99999987653     5679999999887654222   1221    45689999998     788888999988888


Q ss_pred             EeeecccccccCCCCCCcceeeeeccCCcccceEEEE-EeecCCCCCCCcceEE-EeeeCCC--cEEEeEec
Q 037555          230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM-AWKTHEKPKNSRTMQL-ASCGADN--TVRVFQVN  297 (298)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l-~s~~~d~--~i~iw~~~  297 (298)
                      .+....            . ...   +..|...|.++ .|+|++       ..| ++++.++  .++||+++
T Consensus       364 ~~~~~~------------~-~~~---l~~~~~~v~~~~~~s~dg-------~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          364 RIDSKG------------K-AAA---LTHGNWSVDELLAVDEKA-------GLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECSSS------------C-EEE---SCCSSSCEEEEEEEETTT-------TEEEEEECSSCTTCBEEEEEE
T ss_pred             EEcCCC------------C-eee---eeecceEEEeEeEEeCCC-------CEEEEEEeCCCCceEEEEEEE
Confidence            876321            2 222   44567778887 599999       555 5555555  89999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=6.2e-19  Score=143.36  Aligned_cols=217  Identities=12%  Similarity=0.092  Sum_probs=144.7

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEE
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSV  129 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i  129 (298)
                      ..+...+..++|+|+|+ |++++..  ..++.|.+|++.+++  .+..+..+...+..++|+|++++|++++ .++.+.+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            34556788999999999 5555321  136899999997665  3444455677888999999999888887 6899999


Q ss_pred             EEeccCCCCccceeeeEEeec---------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCc
Q 037555          130 FAIQRTGTGEIDYQLIARQEA---------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSS  199 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~  199 (298)
                      |++.....    ...+..+..         ....+.+++|+|+++.+++...++.|++||+.....+.....+. .....
T Consensus       113 ~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  188 (347)
T 3hfq_A          113 MKIAADGA----LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG  188 (347)
T ss_dssp             EEECTTSC----EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred             EEeCCCCC----eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence            99964221    222332221         12348889999999966666678899999998322222221211 12346


Q ss_pred             eEEEEEeeccccCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc---ccceEEEEEeecCCCCC
Q 037555          200 VTALSWVGLDRQKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC---HVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  275 (298)
                      +..++|+|++     .+++ ++..++.|.+|++......         ......+.....   ....+..++|+|++   
T Consensus       189 p~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~i~~spdG---  251 (347)
T 3hfq_A          189 PRHLVFSPDG-----QYAFLAGELSSQIASLKYDTQTGA---------FTQLGIVKTIPADYTAHNGAAAIRLSHDG---  251 (347)
T ss_dssp             EEEEEECTTS-----SEEEEEETTTTEEEEEEEETTTTE---------EEEEEEEESSCTTCCSCCEEEEEEECTTS---
T ss_pred             CceEEECCCC-----CEEEEEeCCCCEEEEEEecCCCCc---------eEEeeeeeecCCCCCCCCcceeEEECCCC---
Confidence            7889999998     5444 4567889999999852100         011222221111   12568899999999   


Q ss_pred             CCcceEE-EeeeCCCcEEEeEec
Q 037555          276 NSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       276 ~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                          ++| ++...++.|.+|+++
T Consensus       252 ----~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          252 ----HFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             ----CEEEEEEETTTEEEEEEEC
T ss_pred             ----CEEEEEeCCCCEEEEEEEC
Confidence                655 666678999999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=3.8e-20  Score=158.77  Aligned_cols=195  Identities=14%  Similarity=0.087  Sum_probs=150.9

Q ss_pred             EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe--ccCCCCcc
Q 037555           63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI--QRTGTGEI  140 (298)
Q Consensus        63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~  140 (298)
                      .|+|++.+++++     ..++.|.+||..+++.+.++..+.. +..++|+|+++++++++.|+.|.+||+  .+      
T Consensus       144 ~~~p~~~~~vs~-----~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------  211 (543)
T 1nir_A          144 DLDLPNLFSVTL-----RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE------  211 (543)
T ss_dssp             CCCGGGEEEEEE-----GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS------
T ss_pred             ccCCCCEEEEEE-----cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC------
Confidence            488988888887     4589999999999999888873333 889999999999999999999999999  44      


Q ss_pred             ceeeeEEeeccCCceEEEEEcc----CCCEEEEeeC-CCeEEEEEccCCcceeeeeecC-------CC-CCceEEEEEee
Q 037555          141 DYQLIARQEAHKRIIWSCSWNP----FGHEFATGSR-DKTVKIWAVENKSSVKQILALP-------PF-NSSVTALSWVG  207 (298)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~  207 (298)
                       ...+..+. +...+..++|+|    +++++++++. ++.|.+||..+.+.+..+....       .| ...+.++.++|
T Consensus       212 -~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          212 -PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             -CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             -CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence             45566665 455679999999    9999999884 8999999999988777443210       02 23688999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE-eee
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA-SCG  286 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~  286 (298)
                      ++.    .++++...++.|.+||+.+....           ....+    .+...+.++.|+|++       ++|+ ++.
T Consensus       290 ~~~----~~~vs~~~~g~i~vvd~~~~~~l-----------~~~~i----~~~~~~~~~~~spdg-------~~l~va~~  343 (543)
T 1nir_A          290 EHP----EFIVNVKETGKVLLVNYKDIDNL-----------TVTSI----GAAPFLHDGGWDSSH-------RYFMTAAN  343 (543)
T ss_dssp             SSS----EEEEEETTTTEEEEEECTTSSSC-----------EEEEE----ECCSSCCCEEECTTS-------CEEEEEEG
T ss_pred             CCC----EEEEEECCCCeEEEEEecCCCcc-----------eeEEe----ccCcCccCceECCCC-------CEEEEEec
Confidence            874    67888888999999999765211           11122    245567789999999       6554 555


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      .+++|.+||+.
T Consensus       344 ~~~~v~v~D~~  354 (543)
T 1nir_A          344 NSNKVAVIDSK  354 (543)
T ss_dssp             GGTEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence            68999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=3.6e-20  Score=164.49  Aligned_cols=232  Identities=11%  Similarity=0.121  Sum_probs=159.7

Q ss_pred             CCceeeeccCCCccccccc----CCCC----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----
Q 037555           25 DAVPAVFTEPPIEDQLAWH----TLWP----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----   92 (298)
Q Consensus        25 ~~v~~~~~~~~~~~~~~~~----~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----   92 (298)
                      ..+..+.++|. ...+...    .+|+    ....+..+...+.+++|+|+|+.|+++.      ++.|++|++.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~------~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR------NHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE------TTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE------CCeEEEEecCccccc
Confidence            45888888855 4333332    2342    3455666778899999999999999863      68999999998    


Q ss_pred             -ceeeecccccccc--------------EEEEEEcCCCCEEEEEe---------------------------------CC
Q 037555           93 -WKAMGRLQSHSLT--------------VTQIRFSHDDNLLLSVS---------------------------------RD  124 (298)
Q Consensus        93 -~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d  124 (298)
                       ++.......+...              +.++.|+|||++|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             7766544433332              48899999999999987                                 44


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-----eEEEEEccCCcceeeeeecCCCC--
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-----TVKIWAVENKSSVKQILALPPFN--  197 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~--  197 (298)
                      ..|++||+....     ...+.....+...+..++|+|+++.|++++.++     .|++||+.+++....+.... ..  
T Consensus       235 ~~l~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~  308 (706)
T 2z3z_A          235 VTVGIYHLATGK-----TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-DKHY  308 (706)
T ss_dssp             EEEEEEETTTTE-----EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-CSSC
T ss_pred             eEEEEEECCCCc-----eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-CCCe
Confidence            679999987632     111111124667899999999999999987665     89999999874333222111 11  


Q ss_pred             -CceEEEEEee--ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE-EEeecCCC
Q 037555          198 -SSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR-MAWKTHEK  273 (298)
Q Consensus       198 -~~v~~~~~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~  273 (298)
                       ..+.+++|+|  ++     .+++++..++.++||.+....            .....   +..+...+.+ ++|+|++ 
T Consensus       309 ~~~~~~~~~sp~~dg-----~~l~~~~~~g~~~l~~~~~~~------------~~~~~---l~~~~~~v~~~~~~spdg-  367 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNN-----QFIWQSRRDGWNHLYLYDTTG------------RLIRQ---VTKGEWEVTNFAGFDPKG-  367 (706)
T ss_dssp             CCCCSCCEECTTCSS-----EEEEEECTTSSCEEEEEETTS------------CEEEE---CCCSSSCEEEEEEECTTS-
T ss_pred             ECccCCceeecCCCC-----EEEEEEccCCccEEEEEECCC------------CEEEe---cCCCCeEEEeeeEEcCCC-
Confidence             2346789999  88     789999999999999987221            33333   3346667776 7999998 


Q ss_pred             CCCCcceEEEe-eeCCC--cEEEeEe
Q 037555          274 PKNSRTMQLAS-CGADN--TVRVFQV  296 (298)
Q Consensus       274 ~~~~~~~~l~s-~~~d~--~i~iw~~  296 (298)
                            ..|+. ++.++  .+.||.+
T Consensus       368 ------~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          368 ------TRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             ------SEEEEEESSSCTTCBEEEEE
T ss_pred             ------CEEEEEecCCCCceEEEEEE
Confidence                  55554 44444  2445443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=2.7e-19  Score=144.45  Aligned_cols=210  Identities=6%  Similarity=0.016  Sum_probs=147.7

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCCEEEEEeCCC--
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--  125 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--  125 (298)
                      ...+..+...+ +++|+|+++++++++.    .++.|.+||+.+++. ...+..+..+..+++|+|++++++++..++  
T Consensus        33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  107 (331)
T 3u4y_A           33 LNQITLGYDFV-DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHP  107 (331)
T ss_dssp             EEEEECCCCEE-EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSS
T ss_pred             eeeEEccCCcc-eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCc
Confidence            34444556667 9999999997777753    478999999998887 666666666665599999999998655553  


Q ss_pred             -eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCe-EEEEEccCCcceeee--eecCCCCCce
Q 037555          126 -QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKT-VKIWAVENKSSVKQI--LALPPFNSSV  200 (298)
Q Consensus       126 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~~wd~~~~~~~~~~--~~~~~~~~~v  200 (298)
                       .|.+||+..       ...+..+.. ......++|+|++++++++ ..++. |.+|++.....+...  ..+ .....+
T Consensus       108 ~~i~v~d~~~-------~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~  178 (331)
T 3u4y_A          108 FNMQSYSFLK-------NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRP  178 (331)
T ss_dssp             CEEEEEETTT-------TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSE
T ss_pred             ccEEEEECCC-------CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCc
Confidence             899999986       444554443 3456899999999855554 55688 999999864433211  122 234567


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM  280 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  280 (298)
                      ..++|+|++.    .+++++..++.|++||+.+++..          ..+..+.    ....+..++|+|++       +
T Consensus       179 ~~~~~spdg~----~l~v~~~~~~~v~v~d~~~~~~~----------~~~~~~~----~~~~~~~~~~spdg-------~  233 (331)
T 3u4y_A          179 FNITFTPDGN----FAFVANLIGNSIGILETQNPENI----------TLLNAVG----TNNLPGTIVVSRDG-------S  233 (331)
T ss_dssp             EEEEECTTSS----EEEEEETTTTEEEEEECSSTTSC----------EEEEEEE----CSSCCCCEEECTTS-------S
T ss_pred             cceEECCCCC----EEEEEeCCCCeEEEEECCCCccc----------ceeeecc----CCCCCceEEECCCC-------C
Confidence            8999999982    24455556899999999876320          1133332    23567889999999       6


Q ss_pred             EE-EeeeCCCcEEEeEec
Q 037555          281 QL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       281 ~l-~s~~~d~~i~iw~~~  297 (298)
                      +| ++...++.|.+||+.
T Consensus       234 ~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECC
Confidence            44 555568889999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=9.7e-19  Score=142.28  Aligned_cols=238  Identities=11%  Similarity=0.065  Sum_probs=164.4

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCcc-ccccc------CCC-----CceEEeccCCC---------ceEEEE
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIED-QLAWH------TLW-----PESHKLYGHGN---------ELFSLC   63 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------~~~-----~~~~~~~~h~~---------~v~~~~   63 (298)
                      .+..++..+++.+..+... ..+..+.+.| .+. .++..      .+|     ..+..+..+..         .+.+++
T Consensus        70 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHND-LKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             EEEEECTTTCCEEEEEEES-SCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             cEEEEcCCCCeEEEEEecC-CCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            4555666666666666543 2345556663 333 22222      122     12344443332         278999


Q ss_pred             EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555           64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ  143 (298)
Q Consensus        64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (298)
                      |+|+++.+++++.   ..++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+       ..
T Consensus       148 ~s~dg~~l~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-------~~  217 (353)
T 3vgz_A          148 ADDATNTVYISGI---GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-------NK  217 (353)
T ss_dssp             EETTTTEEEEEEE---SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-------TE
T ss_pred             ECCCCCEEEEEec---CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-------Ce
Confidence            9999998888764   3478999999999998887775666688999999999999999999999999886       34


Q ss_pred             eeEEeec----cCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEE-
Q 037555          144 LIARQEA----HKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL-  217 (298)
Q Consensus       144 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l-  217 (298)
                      ....+..    +...+..++|+|+++++++++. ++.|.+||+.+++....+. .  . . ...++|+|++     .++ 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~--~-~-~~~~~~s~dg-----~~l~  287 (353)
T 3vgz_A          218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-A--P-E-SLAVLFNPAR-----NEAY  287 (353)
T ss_dssp             EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-C--S-S-CCCEEEETTT-----TEEE
T ss_pred             EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-c--C-C-CceEEECCCC-----CEEE
Confidence            4444432    4556788999999997777665 5899999999888766432 1  1 1 2569999998     544 


Q ss_pred             EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555          218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD  288 (298)
Q Consensus       218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d  288 (298)
                      ++...++.|.+||..++             +....+.    ....+.+++|+|++       ++|+.+..+
T Consensus       288 v~~~~~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~v~~~~  334 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSY-------------KVVKTFD----TPTHPNSLALSADG-------KTLYVSVKQ  334 (353)
T ss_dssp             EEETTTTEEEEEETTTT-------------EEEEEEE----CCSEEEEEEECTTS-------CEEEEEEEC
T ss_pred             EEECCCCeEEEEECCCC-------------eEEEEEe----cCCCCCeEEEcCCC-------CEEEEEEcc
Confidence            45557899999999876             4444443    23467899999999       655544433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=4.7e-19  Score=144.15  Aligned_cols=207  Identities=9%  Similarity=0.021  Sum_probs=153.5

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCC--CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQS--TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFA  131 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd  131 (298)
                      ....+..++|+|+++.+++++.+..  ..++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456889999999999988864210  0268999999999988877763 34578899999999555 455579999999


Q ss_pred             eccCCCCccceeeeEEeeccCC---------ceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          132 IQRTGTGEIDYQLIARQEAHKR---------IIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      ..+       .+.+..+..+..         .+..++|+|+++++++++  .++.|.+||..+.+...   .+..+...+
T Consensus       118 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~  187 (353)
T 3vgz_A          118 AKT-------GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMS  187 (353)
T ss_dssp             TTT-------CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTC
T ss_pred             CCC-------CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCcc
Confidence            986       334444443322         268899999999887776  47899999999887766   444344557


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcc
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      .+++|+|++     .++++++.++.|.+||..++             +....+.. ..++...+..++|+|++       
T Consensus       188 ~~~~~s~dg-----~~l~~~~~~~~i~~~d~~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~dg-------  242 (353)
T 3vgz_A          188 TGLALDSEG-----KRLYTTNADGELITIDTADN-------------KILSRKKLLDDGKEHFFINISLDTAR-------  242 (353)
T ss_dssp             CCCEEETTT-----TEEEEECTTSEEEEEETTTT-------------EEEEEEECCCSSSCCCEEEEEEETTT-------
T ss_pred             ceEEECCCC-----CEEEEEcCCCeEEEEECCCC-------------eEEEEEEcCCCCCCcccceEEECCCC-------
Confidence            889999998     78888888999999999876             44333321 22355678899999998       


Q ss_pred             eEE-EeeeCCCcEEEeEec
Q 037555          280 MQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l-~s~~~d~~i~iw~~~  297 (298)
                      .+| ++...++.|.+||+.
T Consensus       243 ~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          243 QRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             TEEEEEESSSSEEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEECC
Confidence            554 444556999999974

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=3.7e-20  Score=165.31  Aligned_cols=201  Identities=12%  Similarity=0.132  Sum_probs=147.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCce-----EEEEEEcCCceeeecccccc------------------------ccE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAA-----EIWLWEVGSWKAMGRLQSHS------------------------LTV  106 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~-----~i~vw~~~~~~~~~~~~~~~------------------------~~v  106 (298)
                      ...|.+++|+|||++|++++.    .++     .|++||+.+++....+..+.                        ..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~----~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRG----KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEEC----CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEec----cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            457999999999999999964    144     99999999887766555433                        337


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555          107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS  186 (298)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  186 (298)
                      .+++|+|||++|++++. +.|++||+.....     .....+..+...+..++|+|+|++|++++. +.|++||+.+++.
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~  184 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ  184 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE
Confidence            89999999999999886 9999999986310     023345567788999999999999999884 6899999988765


Q ss_pred             eeeeeecCCCCCc----------------eEEEEEeeccccCCccEEEEeecCC--------------------------
Q 037555          187 VKQILALPPFNSS----------------VTALSWVGLDRQKNHGFLAVGMESG--------------------------  224 (298)
Q Consensus       187 ~~~~~~~~~~~~~----------------v~~~~~~~~~~~~~~~~l~~g~~dg--------------------------  224 (298)
                      ..   ....+...                +.+++|+|++     .+|++++.|+                          
T Consensus       185 ~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-----~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~  256 (741)
T 2ecf_A          185 MQ---LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-----SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA  256 (741)
T ss_dssp             EE---CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-----SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred             EE---eccCCccceeccccceeeeeccccccceEECCCC-----CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence            43   22222221                4789999999     6788876654                          


Q ss_pred             -------cEEEEEeee-cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-----CCcE
Q 037555          225 -------VIELWSISV-NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-----DNTV  291 (298)
Q Consensus       225 -------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i  291 (298)
                             .|++||+.+ ++             ... +.....|...+.+++| ||+       .+|++++.     +..|
T Consensus       257 g~~~~~~~l~~~d~~~~~~-------------~~~-~~~~~~~~~~~~~~~~-pDg-------~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          257 GDANVQVKLGVISPAEQAQ-------------TQW-IDLGKEQDIYLARVNW-RDP-------QHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             TSCCCEEEEEEECSSTTCC-------------CEE-ECCCSCSSEEEEEEEE-EET-------TEEEEEEEETTSSEEEE
T ss_pred             CCCCCeeEEEEEECCCCCc-------------eEE-ecCCCCcceEEEEEEe-CCC-------CEEEEEEecccCCeEEE
Confidence                   677788765 42             211 1111247788999999 999       67776543     5678


Q ss_pred             EEeEec
Q 037555          292 RVFQVN  297 (298)
Q Consensus       292 ~iw~~~  297 (298)
                      ++||+.
T Consensus       315 ~~~d~~  320 (741)
T 2ecf_A          315 VEVTLA  320 (741)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            888863

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=7.5e-20  Score=162.87  Aligned_cols=253  Identities=10%  Similarity=0.018  Sum_probs=166.4

Q ss_pred             ccccceeeeecCcccccccCCCC---CceeeeccCCCcccccccC---------------CCC----ceEEec---cCCC
Q 037555            3 AATRETVERHGNDGLDTLESVPD---AVPAVFTEPPIEDQLAWHT---------------LWP----ESHKLY---GHGN   57 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~---------------~~~----~~~~~~---~h~~   57 (298)
                      ++.++.++..+|+....+..|..   .|..+.++ |+++.++...               +|+    ....+.   +|..
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  114 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCEEEEECCCCcEEEEeccccccccccceEEEC-CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence            34567778888888888877765   38888998 5666665441               442    123333   3444


Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccE------------------EEEEEcCCCCEEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV------------------TQIRFSHDDNLLL  119 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~  119 (298)
                      .+..++|||||+.||.++      ++.|++|++.+++.......+...+                  .+++|+|||+.|+
T Consensus       115 ~~~~~~~SPdG~~la~~~------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          115 KLQYAGWGPKGQQLIFIF------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             CCSBCCBCSSTTCEEEEE------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cccccEECCCCCEEEEEE------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence            588999999999999985      4789999999887665544433333                  7899999999999


Q ss_pred             EEeCCC----------------------------------eEEEEEeccCCCCccceeeeEEeec------cCCceEEEE
Q 037555          120 SVSRDR----------------------------------QFSVFAIQRTGTGEIDYQLIARQEA------HKRIIWSCS  159 (298)
Q Consensus       120 ~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~  159 (298)
                      .++.++                                  .|++||+....       ....+..      +...+..++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-------~~~~l~~~~~~~~~~~~~~~~~  261 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-------HDLEMMPPDDPRMREYYITMVK  261 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-------CCEECCCCCCGGGSSEEEEEEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-------eeEEeeCCccCCCccceeEEEE
Confidence            887653                                  78899987632       2223333      356789999


Q ss_pred             EccCCCEEEEeeC----CCeEEEEEccCCcceeeeeecCCCCCce----EEEEEeeccccCCccEEEE--eecCC-----
Q 037555          160 WNPFGHEFATGSR----DKTVKIWAVENKSSVKQILALPPFNSSV----TALSWVGLDRQKNHGFLAV--GMESG-----  224 (298)
Q Consensus       160 ~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~l~~--g~~dg-----  224 (298)
                      |+|+++++++...    +..|++||+.+++....+..  .+...+    ..++|+|++     +.|+.  +..++     
T Consensus       262 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~~~~~~  334 (723)
T 1xfd_A          262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDG-----RKFFFIRAIPQGGRGKF  334 (723)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTS-----CSEEEEEEECCSSSSCE
T ss_pred             EeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCC-----CeEEEEEecccCCCcce
Confidence            9999998877653    35799999998776542211  122333    378999998     44443  45666     


Q ss_pred             -cEEEEEe-eecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCcceEEEeeeCC---CcEEEeEec
Q 037555          225 -VIELWSI-SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSRTMQLASCGAD---NTVRVFQVN  297 (298)
Q Consensus       225 -~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iw~~~  297 (298)
                       .|++||. ..+..           .+...   +..+...+. .++|+|++       ..|+..+.+   +.+++|+++
T Consensus       335 ~~l~~~d~~~~~~~-----------~~~~~---l~~~~~~~~~~~~~spdg-------~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          335 YHITVSSSQPNSSN-----------DNIQS---ITSGDWDVTKILAYDEKG-------NKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEEEECSSCCSSS-----------CCCCB---SCCSSSCEEEEEEEETTT-------TEEEEEESSSCTTCCEEEEEC
T ss_pred             eEEEEEeccCCCCc-----------cceeE---eecCCeEEEeeeEEcCCC-------CEEEEEEcCCCCcceEEEEEe
Confidence             4556662 22210           00112   222233344 47999999       677655544   789999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=3.8e-19  Score=143.64  Aligned_cols=195  Identities=11%  Similarity=0.080  Sum_probs=142.9

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-c----cccEEEEEEcCCCCEEEEEe----------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-H----SLTVTQIRFSHDDNLLLSVS----------  122 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~----------  122 (298)
                      .+..++|+|+++.+++++    ..++.|.+||+.+++.+..+.. +    ...+..++|+|+++++++++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~----~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATV----NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEE----TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEe----CCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            478999999998776654    3478999999998887766552 1    23577899999999888886          


Q ss_pred             --CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC------
Q 037555          123 --RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP------  194 (298)
Q Consensus       123 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------  194 (298)
                        .++.|.+||+..       ......+.. ...+..++|+|++++|+++  ++.|.+||+.+++....+....      
T Consensus       111 ~~~~~~i~v~d~~~-------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~  180 (337)
T 1pby_B          111 EVQPTRVALYDAET-------LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETY  180 (337)
T ss_dssp             EECCCEEEEEETTT-------TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTB
T ss_pred             cccCceEEEEECCC-------CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCce
Confidence              579999999976       344444443 4557889999999988887  6889999998766543221100      


Q ss_pred             ---------------------------------------------------------CCCCceEEEEEeeccccCCccEE
Q 037555          195 ---------------------------------------------------------PFNSSVTALSWVGLDRQKNHGFL  217 (298)
Q Consensus       195 ---------------------------------------------------------~~~~~v~~~~~~~~~~~~~~~~l  217 (298)
                                                                               .+...+.+++|+|++     .++
T Consensus       181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~l  255 (337)
T 1pby_B          181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-----TRA  255 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-----SEE
T ss_pred             eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-----CEE
Confidence                                                                     011234468888887     677


Q ss_pred             EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +++  ++.|++||+.++             +....+.    ....+.+++|+|++       .+|++++.++.|++||+.
T Consensus       256 ~~~--~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          256 FGA--YNVLESFDLEKN-------------ASIKRVP----LPHSYYSVNVSTDG-------STVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEE--ESEEEEEETTTT-------------EEEEEEE----CSSCCCEEEECTTS-------CEEEEESBSSEEEEEETT
T ss_pred             EEe--CCeEEEEECCCC-------------cCcceec----CCCceeeEEECCCC-------CEEEEEcCCCcEEEEECc
Confidence            777  689999998765             4444432    23457889999999       788888889999999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=2e-20  Score=166.57  Aligned_cols=200  Identities=11%  Similarity=0.095  Sum_probs=143.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc---cEEEEEEcCCCCEEEEEeCC---------C
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL---TVTQIRFSHDDNLLLSVSRD---------R  125 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g  125 (298)
                      .+.+++|+|+|++++++      .|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +
T Consensus        18 ~~~~~~~spdg~~~~~~------~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYRE------QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCBSSSSCBCCCC------SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             cccccEEcCCCcEEEEe------CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            46789999999977653      378999999999888777776654   48999999999999998764         7


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC-------
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS-------  198 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-------  198 (298)
                      .+.+||+..+.     ...+.....|...+..++|+|+|+.|++++. +.|++||+.+++...   ....+..       
T Consensus        92 ~i~~~d~~~~~-----~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~---~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           92 YYVLSKIPHGD-----PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR---VVSTGKEGVIYNGL  162 (723)
T ss_dssp             EEEEEESSSCC-----CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE---EECCCBTTTEEEEE
T ss_pred             eEEEEECCCCc-----eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE---EecCCCCCceECcc
Confidence            88899998643     1112222334455889999999999999886 789999999876654   2222222       


Q ss_pred             -----------ceEEEEEeeccccCCccEEEEeecCC----------------------------------cEEEEEeee
Q 037555          199 -----------SVTALSWVGLDRQKNHGFLAVGMESG----------------------------------VIELWSISV  233 (298)
Q Consensus       199 -----------~v~~~~~~~~~~~~~~~~l~~g~~dg----------------------------------~i~vwd~~~  233 (298)
                                 .+.+++|+|++     +.|++++.++                                  .|++||+.+
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg-----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~  237 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDG-----TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG  237 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTS-----SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred             cceeEEEEeccCcceEEECCCC-----CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence                       23789999999     6788776542                                  677777765


Q ss_pred             cccccccCCCCCCcceeeeecc---CCcccceEEEEEeecCCCCCCCcceEEEeeeC----CCcEEEeEec
Q 037555          234 NRTNDVSTPAPSTANIIIRFDP---FACHVAAVNRMAWKTHEKPKNSRTMQLASCGA----DNTVRVFQVN  297 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iw~~~  297 (298)
                      +.             ....+..   ...+...+.+++|+||+       .+|++...    +..|++||+.
T Consensus       238 ~~-------------~~~~l~~~~~~~~~~~~~~~~~~SpDg-------~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          238 PT-------------HDLEMMPPDDPRMREYYITMVKWATST-------KVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             SC-------------CCEECCCCCCGGGSSEEEEEEEESSSS-------EEEEEEEETTSCEEEEEEEETT
T ss_pred             Cc-------------eeEEeeCCccCCCccceeEEEEEeCCC-------eEEEEEEcCCCCeEEEEEEeCC
Confidence            52             1112110   11246789999999999       77766643    3578889863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=6.2e-19  Score=162.80  Aligned_cols=193  Identities=9%  Similarity=0.065  Sum_probs=155.2

Q ss_pred             CCCceEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc-cEEEEEEcCCCCEEEEEeCCCeEE-EEE
Q 037555           55 HGNELFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL-TVTQIRFSHDDNLLLSVSRDRQFS-VFA  131 (298)
Q Consensus        55 h~~~v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd  131 (298)
                      |...+.+++|+ |+|+.|++++      ++.|++|++.+++... +..|.. .+..++|+ +++.|+.++.++.+. +|+
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d  365 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD  365 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE------cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence            34478999999 9999999885      6789999998776544 556776 89999999 999999999888888 888


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      +...       . ...+..|...+..++|+|++++|++++.++.|++||+.+++...   ....+...+.+++|+|++  
T Consensus       366 ~~~~-------~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~SpDG--  432 (1045)
T 1k32_A          366 YRTG-------K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNS--  432 (1045)
T ss_dssp             TTTC-------C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTS--
T ss_pred             CCCC-------C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---eccCCCCCccceEECCCC--
Confidence            7752       2 23334677889999999999999999999999999999887655   333577888999999999  


Q ss_pred             CCccEEEEeecCC----------cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          212 KNHGFLAVGMESG----------VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       212 ~~~~~l~~g~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                         .+|++++.++          .|++||+.++             . ...   +..|...+..++|+|++       .+
T Consensus       433 ---~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-------------~-~~~---l~~~~~~~~~~~~spdG-------~~  485 (1045)
T 1k32_A          433 ---RFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------------K-IFA---ATTENSHDYAPAFDADS-------KN  485 (1045)
T ss_dssp             ---CEEEEEEEECSSTTCSCCEEEEEEEETTTT-------------E-EEE---CSCSSSBEEEEEECTTS-------CE
T ss_pred             ---CeEEEEecCccccccCCCCCeEEEEECCCC-------------c-EEE---eeCCCcccCCceEcCCC-------CE
Confidence               6787776544          8999999765             2 222   44577788899999999       78


Q ss_pred             EEeeeCCCcEEEeE
Q 037555          282 LASCGADNTVRVFQ  295 (298)
Q Consensus       282 l~s~~~d~~i~iw~  295 (298)
                      |++++.++..++|+
T Consensus       486 l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          486 LYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEESCCCCCEEC
T ss_pred             EEEEecccCCcCcc
Confidence            88888887777775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=1.8e-18  Score=153.64  Aligned_cols=253  Identities=11%  Similarity=0.074  Sum_probs=164.0

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCCc---------eEE-eccCCCc-----------
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---------SHK-LYGHGNE-----------   58 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---------~~~-~~~h~~~-----------   58 (298)
                      .+..++..+++.. .+..+...+..+.++ |+++.++..     .+|+.         ... ...+...           
T Consensus       102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~S-pdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKVT-YLFDTNEETASLDFS-PVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEEE-EEECCTTCCTTCEEC-TTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCceE-EccCCcccccCCcCC-CCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            3455555565443 344456667777888 556555543     12221         112 2222222           


Q ss_pred             ---eEEEEEcCCCCEEEeEeccCC----------------------------CCceEEEEEEcCCceeeeccc--ccccc
Q 037555           59 ---LFSLCCDHQGKLVASSCKAQS----------------------------TAAAEIWLWEVGSWKAMGRLQ--SHSLT  105 (298)
Q Consensus        59 ---v~~~~~s~~~~~l~~~~~~~~----------------------------~~d~~i~vw~~~~~~~~~~~~--~~~~~  105 (298)
                         +.++.|+|||++|++++.+.+                            ..+..|++||+.+++......  .|...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               489999999999999863210                            135789999999887654432  46778


Q ss_pred             EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCccceeeeEEeeccCC---ceEEEEEcc--CCCEEEEeeCCCe
Q 037555          106 VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGEIDYQLIARQEAHKR---IIWSCSWNP--FGHEFATGSRDKT  175 (298)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~  175 (298)
                      +..++|+|||+.|++++.++     .|.+||+.++..    ...+.. ..+..   .+..+.|+|  +++++++++.|+.
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            99999999999999888776     899999876311    111111 11222   246789999  9999999999999


Q ss_pred             EEEEEcc-CCcceeeeeecCCCCCceEE-EEEeeccccCCccEEE-EeecCC----cEEEEEeeecccccccCCCCCCcc
Q 037555          176 VKIWAVE-NKSSVKQILALPPFNSSVTA-LSWVGLDRQKNHGFLA-VGMESG----VIELWSISVNRTNDVSTPAPSTAN  248 (298)
Q Consensus       176 i~~wd~~-~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~l~-~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~  248 (298)
                      +++|++. ++....   .+..+...+.. ++|+|++     ..|+ ++..++    .|+.||+.++             .
T Consensus       335 ~~l~~~~~~~~~~~---~l~~~~~~v~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~~-------------~  393 (706)
T 2z3z_A          335 NHLYLYDTTGRLIR---QVTKGEWEVTNFAGFDPKG-----TRLYFESTEASPLERHFYCIDIKGG-------------K  393 (706)
T ss_dssp             CEEEEEETTSCEEE---ECCCSSSCEEEEEEECTTS-----SEEEEEESSSCTTCBEEEEEETTCC-------------C
T ss_pred             cEEEEEECCCCEEE---ecCCCCeEEEeeeEEcCCC-----CEEEEEecCCCCceEEEEEEEcCCC-------------C
Confidence            9999886 444444   55556667776 7999998     4554 455554    4555555443             1


Q ss_pred             eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC----CcEEEeEec
Q 037555          249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD----NTVRVFQVN  297 (298)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~iw~~~  297 (298)
                       ...+    .|...+.+++|+|++       .+|+....+    +.|++||+.
T Consensus       394 -~~~l----~~~~~~~~~~~spdg-------~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          394 -TKDL----TPESGMHRTQLSPDG-------SAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             -CEES----CCSSSEEEEEECTTS-------SEEEEEEECSSCSCEEEEEESS
T ss_pred             -ceec----cCCCceEEEEECCCC-------CEEEEEecCCCCCcEEEEEECC
Confidence             1222    155678899999999       666655433    569999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=2.3e-18  Score=159.07  Aligned_cols=231  Identities=8%  Similarity=0.004  Sum_probs=166.7

Q ss_pred             cccCCCC-CceeeeccCCCccccccc----CCC---C----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555           19 TLESVPD-AVPAVFTEPPIEDQLAWH----TLW---P----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW   86 (298)
Q Consensus        19 ~~~~~~~-~v~~~~~~~~~~~~~~~~----~~~---~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~   86 (298)
                      .+..|.. .+..+.|.  +++.++..    .+|   +    ....+.+|...+..++|+|+|+.|++++.     ++.|+
T Consensus       331 ~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-----~~~v~  403 (1045)
T 1k32_A          331 KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-----RFEIM  403 (1045)
T ss_dssp             ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-----TSEEE
T ss_pred             EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-----CCeEE
Confidence            3455666 66666666  44444332    233   1    24455678889999999999999999954     78999


Q ss_pred             EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC----------eEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR----------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                      +||+.+++....+..|...+.+++|+|||++|++++.++          .|++||+..       .. ...+..|...+.
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g~-~~~l~~~~~~~~  475 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------RK-IFAATTENSHDY  475 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------TE-EEECSCSSSBEE
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------Cc-EEEeeCCCcccC
Confidence            999999888777767889999999999999998887654          899999986       33 556667788889


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEEccCCcce----------------------------------------eeeeecCCC
Q 037555          157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSV----------------------------------------KQILALPPF  196 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~  196 (298)
                      .++|+|++++|++++.++...+|+.......                                        ..+..+..+
T Consensus       476 ~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~  555 (1045)
T 1k32_A          476 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD  555 (1045)
T ss_dssp             EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred             CceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC
Confidence            9999999999999998777777764322110                                        011123335


Q ss_pred             CCceEEEEEeeccccCCccEEEE-------------eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceE
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAV-------------GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV  263 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~-------------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  263 (298)
                      ...+..++++|++     .++++             ......|++||+.++             .. ..+      ...+
T Consensus       556 ~~~~~~~~~s~dg-----~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~-------------~~-~~l------~~~v  610 (1045)
T 1k32_A          556 PGDYRMIIPLESS-----ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------------KV-TEV------KNNL  610 (1045)
T ss_dssp             CBCEEEEEECSSE-----EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-------------CE-EEE------EEEE
T ss_pred             CCChhheEEcCCC-----eEEEEecccCcccccccccCCCceEEEEECCCC-------------cE-EEe------ecCc
Confidence            5678899999988     56664             112446777777654             21 111      1568


Q ss_pred             EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+++|+||+       ..|++++.| .|++||+.
T Consensus       611 ~~~~~S~DG-------~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          611 TDLRLSADR-------KTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EEEEECTTS-------CEEEEEETT-SCEEEEES
T ss_pred             ceEEECCCC-------CEEEEEcCC-cEEEEeCc
Confidence            899999999       788888766 79999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=7.8e-17  Score=131.67  Aligned_cols=213  Identities=12%  Similarity=0.053  Sum_probs=140.0

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------------cccccEEEEEEcCCCCEEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------------SHSLTVTQIRFSHDDNLLL  119 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~  119 (298)
                      .+...+..+++  ++++|++++.    .++.|.+|++.....+..+.              .+...+.+++|+|++++++
T Consensus        97 ~~~~~p~~~~~--dg~~l~~~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           97 TMGADPCYLTT--NGKNIVTANY----SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             CSSSCEEEEEE--CSSEEEEEET----TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             cCCCCcEEEEE--CCCEEEEEEC----CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            35556777887  8888887763    47899999997543332211              1223468899999999766


Q ss_pred             EEe-CCCeEEEEEeccCCC----C-ccce-eeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcc--eee
Q 037555          120 SVS-RDRQFSVFAIQRTGT----G-EIDY-QLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSS--VKQ  189 (298)
Q Consensus       120 ~~~-~dg~i~iwd~~~~~~----~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~--~~~  189 (298)
                      +++ .++.|.+|++.....    . .... ........+......++|+|+++++++++ .++.|.+||+.++..  ...
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            655 489999999986431    0 0000 00112223445678999999999887777 689999999986543  222


Q ss_pred             eeecCCCCCceEEEEEeeccccCCccEEEEeec--CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGME--SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      +.....+...+..++|+|++     ++|+++..  ++.|.+|++......         ...+..+.   . ...+..++
T Consensus       251 ~~~~~~~~~~~~~i~~spdg-----~~l~v~~~~~~~~i~v~~~~~~~g~---------~~~~~~~~---~-g~~~~~~~  312 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDG-----KYLYASNRLKADGVAIFKVDETNGT---------LTKVGYQL---T-GIHPRNFI  312 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTS-----SEEEEEECSSSCEEEEEEECTTTCC---------EEEEEEEE---C-SSCCCEEE
T ss_pred             EecCCCCCCCcccEEECCCC-----CEEEEECCCCCCEEEEEEEcCCCCc---------EEEeeEec---C-CCCCceEE
Confidence            22233334557899999999     67766554  489999999632100         02222222   2 45678899


Q ss_pred             eecCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                      |+|++       ++|++++ .++.|.+|+++
T Consensus       313 ~spdg-------~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          313 ITPNG-------KYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECTTS-------CEEEEEETTTTEEEEEEEC
T ss_pred             ECCCC-------CEEEEEECCCCCEEEEEEE
Confidence            99999       6777666 67899998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=2.2e-18  Score=139.91  Aligned_cols=197  Identities=8%  Similarity=-0.017  Sum_probs=138.7

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCCCEEEEEeCC-------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDDNLLLSVSRD-------  124 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d-------  124 (298)
                      .+..++|+|+++.+++++    ..++.|.+||+.+++.+..+...      ...+..++|+|+++++++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~----~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLN----NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEE----TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEe----CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence            578999999999776554    34789999999998877666532      2347889999999999998865       


Q ss_pred             -----CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-C---
Q 037555          125 -----RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-P---  195 (298)
Q Consensus       125 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~---  195 (298)
                           +.|.+||+.+...    ...+.... +...+.+++|+|+++ +++++.  .|.+||+.+++....+..-. .   
T Consensus       120 ~~~~~~~i~~~d~~~~~~----~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~  191 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLE----AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKG  191 (349)
T ss_dssp             EEECCCEEEEEEGGGGGG----BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTT
T ss_pred             cccCCCeEEEEECCCccc----cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcc
Confidence                 8999999986321    11122222 334688899999999 555543  49999998877654221110 0   


Q ss_pred             -------------------------------------------------------------CCCceEEEEEee-ccccCC
Q 037555          196 -------------------------------------------------------------FNSSVTALSWVG-LDRQKN  213 (298)
Q Consensus       196 -------------------------------------------------------------~~~~v~~~~~~~-~~~~~~  213 (298)
                                                                                   ....+..++|+| ++    
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg----  267 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP----  267 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT----
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC----
Confidence                                                                         001234556667 66    


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       .+++++  ++.|.+||+.++             +....+.    ....+.+++|+|++       .+|++++.++.|++
T Consensus       268 -~~l~~~--~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~v~v  320 (349)
T 1jmx_B          268 -NQIYGV--LNRLAKYDLKQR-------------KLIKAAN----LDHTYYCVAFDKKG-------DKLYLGGTFNDLAV  320 (349)
T ss_dssp             -TEEEEE--ESEEEEEETTTT-------------EEEEEEE----CSSCCCEEEECSSS-------SCEEEESBSSEEEE
T ss_pred             -CEEEEE--cCeEEEEECccC-------------eEEEEEc----CCCCccceEECCCC-------CEEEEecCCCeEEE
Confidence             677777  789999999876             4444433    23346789999998       67777888999999


Q ss_pred             eEec
Q 037555          294 FQVN  297 (298)
Q Consensus       294 w~~~  297 (298)
                      ||++
T Consensus       321 ~d~~  324 (349)
T 1jmx_B          321 FNPD  324 (349)
T ss_dssp             EETT
T ss_pred             Eecc
Confidence            9974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=4.2e-19  Score=154.26  Aligned_cols=200  Identities=9%  Similarity=-0.036  Sum_probs=143.6

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeC---CCeEEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSR---DRQFSVFA  131 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd  131 (298)
                      ..+|++++|+|||+.||.++.    .+++++||++.+++... +..|. ..+..++|+|| +++++++.   +....+|.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEc----cCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            557999999999999999863    38899999997666544 44444 68889999988 67776665   45566665


Q ss_pred             ecc--CCCCcc--------------ce--------------------eeeEEeeccCCceEEEEEccCCCEEEEeeCC--
Q 037555          132 IQR--TGTGEI--------------DY--------------------QLIARQEAHKRIIWSCSWNPFGHEFATGSRD--  173 (298)
Q Consensus       132 ~~~--~~~~~~--------------~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  173 (298)
                      +..  ......              +.                    .....+..+..  .+++|+|+|++|++++.+  
T Consensus        95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred             EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence            544  211000              00                    00011111112  678899999999988876  


Q ss_pred             --CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC--cEEEEEeeecccccccCCCCCCcce
Q 037555          174 --KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG--VIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       174 --g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                        +.|++||+.+++..    .+..+...+..++|+|++     +.|+++..++  .|++||+.++             ..
T Consensus       173 ~~~~i~~~d~~~g~~~----~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~i~~~d~~~~-------------~~  230 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR----VFDSGEGSFSSASISPGM-----KVTAGLETAREARLVTVDPRDG-------------SV  230 (582)
T ss_dssp             TEEEEEEEETTTCCCE----EECCSSCEEEEEEECTTS-----CEEEEEECSSCEEEEEECTTTC-------------CE
T ss_pred             CCeEEEEEcCCCCCce----EeecCCCccccceECCCC-----CEEEEccCCCeeEEEEEcCCCC-------------cE
Confidence              78999999887654    345677889999999999     7888888888  8999998765             22


Q ss_pred             eeeeccCCcccceEEEEE--------eecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          250 IIRFDPFACHVAAVNRMA--------WKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      . .   +..|...+..++        |+||+       .++++++.|+.+++|++
T Consensus       231 ~-~---~~~~~~~~~~~~~~~~~~~~~spdg-------~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          231 E-D---LELPSKDFSSYRPTAITWLGYLPDG-------RLAVVARREGRSAVFID  274 (582)
T ss_dssp             E-E---CCCSCSHHHHHCCSEEEEEEECTTS-------CEEEEEEETTEEEEEET
T ss_pred             E-E---ccCCCcChhhhhhccccceeEcCCC-------cEEEEEEcCCcEEEEEE
Confidence            2 2   334555555566        99999       89999999999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.8e-16  Score=129.55  Aligned_cols=215  Identities=10%  Similarity=0.081  Sum_probs=142.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEe-CCCeEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSV  129 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i  129 (298)
                      +...+..++|+|+|++|++++.+. ..++.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            667788999999999999986521 0348999998865  432  3333334556677777  788777766 5889999


Q ss_pred             EEeccCCCCccceeeeEEee--------ccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcc------ee-----e
Q 037555          130 FAIQRTGTGEIDYQLIARQE--------AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSS------VK-----Q  189 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~------~~-----~  189 (298)
                      |++........ ........        .+...+.+++|+|+++++++++ .++.|.+|++.....      +.     .
T Consensus       125 ~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          125 FPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            99975332111 00011111        1123458899999999776665 478999999875442      11     1


Q ss_pred             eeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555          190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW  268 (298)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  268 (298)
                      .... .....+..++|+|++     .++++++ .++.|.+|++.++..           .....+.....+...+..++|
T Consensus       204 ~~~~-~~~~~~~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~g~~-----------~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          204 AFKV-APGSGPRHLIFNSDG-----KFAYLINEIGGTVIAFRYADGML-----------DEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             EEEC-CTTCCEEEEEECTTS-----SEEEEEETTTCEEEEEEEETTEE-----------EEEEEEESCSSCCCCEEEEEE
T ss_pred             ceec-CCCCCCeEEEEcCCC-----CEEEEEcCCCCeEEEEEecCCce-----------EEeEEEecCCCCCCCcccEEE
Confidence            1122 245567899999998     6666666 689999999985421           223333333345556789999


Q ss_pred             ecCCCCCCCcceEEEeeeC--CCcEEEeEec
Q 037555          269 KTHEKPKNSRTMQLASCGA--DNTVRVFQVN  297 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~--d~~i~iw~~~  297 (298)
                      +|++       ++|+++..  ++.|.+|+++
T Consensus       267 spdg-------~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          267 SPDG-------KYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CTTS-------SEEEEEECSSSCEEEEEEEC
T ss_pred             CCCC-------CEEEEECCCCCCEEEEEEEc
Confidence            9999       67755554  5899999984

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=5.8e-18  Score=147.07  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=161.7

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------CC----------ceEEeccCCCceEEEEEcC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------WP----------ESHKLYGHGNELFSLCCDH   66 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~h~~~v~~~~~s~   66 (298)
                      ++..+.+...+|+.......+...+..+.++ |+ ..+.+...      |.          ....+... ..+...+|+|
T Consensus        43 ~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~s~  119 (582)
T 3o4h_A           43 EGSVNAYLYDGGETVKLNREPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMRILSGVD  119 (582)
T ss_dssp             TTEEEEEEEETTEEEECCSSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBEEEEEEE
T ss_pred             CCceeEEEEcCCCcEeeecccccccccccCC-CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCceeeeeCC
Confidence            3445667766666554444443678888888 44 44432211      10          01122222 2345668888


Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccce
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~  142 (298)
                      +|+.++..+.   . ++.+.+||+.+++...... +..  .+++|+|||++|++++.+    +.|++||+..+.      
T Consensus       120 dg~~~~~~s~---~-~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------  186 (582)
T 3o4h_A          120 TGEAVVFTGA---T-EDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------  186 (582)
T ss_dssp             CSSCEEEEEE---C-SSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC------
T ss_pred             CCCeEEEEec---C-CCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC------
Confidence            8864333322   2 3344599998887655443 333  789999999999988877    789999987632      


Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEE--------EeeccccC
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALS--------WVGLDRQK  212 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~  212 (298)
                        ...+..|...+..++|+|||+.|+++..++  .|++||+.+++..    .+..+...+..++        |+|++   
T Consensus       187 --~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~spdg---  257 (582)
T 3o4h_A          187 --LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE----DLELPSKDFSSYRPTAITWLGYLPDG---  257 (582)
T ss_dssp             --CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----ECCCSCSHHHHHCCSEEEEEEECTTS---
T ss_pred             --ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----EccCCCcChhhhhhccccceeEcCCC---
Confidence              335667888899999999999999888888  8999999887654    3345666666667        99998   


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc--
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT--  290 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~--  290 (298)
                        .++++++.++.+++|++  +             +...      .+...|.+++|+ ++       .++++++.+..  
T Consensus       258 --~~~~~~~~~g~~~l~~~--g-------------~~~~------~~~~~v~~~~~s-dg-------~~l~~~s~~~~p~  306 (582)
T 3o4h_A          258 --RLAVVARREGRSAVFID--G-------------ERVE------APQGNHGRVVLW-RG-------KLVTSHTSLSTPP  306 (582)
T ss_dssp             --CEEEEEEETTEEEEEET--T-------------EEEC------CCSSEEEEEEEE-TT-------EEEEEEEETTEEE
T ss_pred             --cEEEEEEcCCcEEEEEE--C-------------Ceec------cCCCceEEEEec-CC-------EEEEEEcCCCCCC
Confidence              79999999999999998  4             2222      134678899999 88       78888877744  


Q ss_pred             -EEEeE
Q 037555          291 -VRVFQ  295 (298)
Q Consensus       291 -i~iw~  295 (298)
                       +.+|+
T Consensus       307 ~l~~~d  312 (582)
T 3o4h_A          307 RIVSLP  312 (582)
T ss_dssp             EEEEET
T ss_pred             eEEEEc
Confidence             55554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=8.6e-17  Score=131.66  Aligned_cols=207  Identities=9%  Similarity=0.056  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCE--EEeEe------ccCCC----CceEEEEEEcC-Cceeeeccc----cccccEEEEEEcCCCCEEEEE
Q 037555           59 LFSLCCDHQGKL--VASSC------KAQST----AAAEIWLWEVG-SWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        59 v~~~~~s~~~~~--l~~~~------~~~~~----~d~~i~vw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      +.+++|+|+|++  ++++.      ..  .    .++.+.+|++. +++....+.    .+...+.+++|+|+|++++++
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~--~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYA--NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEE--EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceecc--ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            556889999995  44442      00  0    37899999997 455443333    245678999999999988877


Q ss_pred             eC-CCeEEEEEec-cCCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc--CCcce---eeee
Q 037555          122 SR-DRQFSVFAIQ-RTGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE--NKSSV---KQIL  191 (298)
Q Consensus       122 ~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~~~---~~~~  191 (298)
                      .. ++.|++|++. .+.     ...+..+.  .+...+..++|+|+++++++++. ++.|.+|++.  +++..   ..+.
T Consensus       163 ~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          163 DLTANKLWTHRKLASGE-----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSC-----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             cCCCCEEEEEEECCCCC-----EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence            64 6899999997 322     22223332  23566899999999999888775 7899999875  34321   1122


Q ss_pred             ecCC----CCC------ceEEEE-EeeccccCCccEEEEeecC-C-----cEEEEEeee-cccccccCCCCCCcceeeee
Q 037555          192 ALPP----FNS------SVTALS-WVGLDRQKNHGFLAVGMES-G-----VIELWSISV-NRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       192 ~~~~----~~~------~v~~~~-~~~~~~~~~~~~l~~g~~d-g-----~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  253 (298)
                      .+..    +..      .+..++ |+|++     ++|+++..+ .     .|.+|++.. +             ......
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG-----~~l~v~~~~~~~~~~~~i~v~~~~~~g-------------~~~~~~  299 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSG-----KYMFASSRANKFELQGYIAGFKLRDCG-------------SIEKQL  299 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTS-----SEEEEEEEESSTTSCCEEEEEEECTTS-------------CEEEEE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCC-----CEEEEECCCCCCCCCCeEEEEEECCCC-------------CEEEee
Confidence            3321    122      578999 99998     677666543 2     899999963 3             211110


Q ss_pred             ccCCcccceEEEEEeec---CCCCCCCcceEEEeeeC-CCcEEEeEec
Q 037555          254 DPFACHVAAVNRMAWKT---HEKPKNSRTMQLASCGA-DNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~l~s~~~-d~~i~iw~~~  297 (298)
                      .....+...+..++|+|   ++       .+|++++. ++.|++|+++
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg-------~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSD-------EWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCT-------TEEEEECSSSCEEEEEEEE
T ss_pred             eeeecCCCCcccceecCCCcCC-------CEEEEEEcCCCeEEEEEEc
Confidence            00112334556789999   78       68887776 4899999874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=152.05  Aligned_cols=196  Identities=13%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc---cEEEEEEcCCCCEEEEEeC---------CCeEE
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL---TVTQIRFSHDDNLLLSVSR---------DRQFS  128 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~  128 (298)
                      +++|+|+|++++++      .|+.|++||+.+++....+..+..   .+.+++|+|||++|+.++.         ++.|+
T Consensus        20 ~~~~s~dg~~~~~~------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQS------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEEC------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEc------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            78999999766554      378999999999887766665544   3899999999999998876         78999


Q ss_pred             EEEeccCCCCccceeee--EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce------
Q 037555          129 VFAIQRTGTGEIDYQLI--ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------  200 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v------  200 (298)
                      +||+..+.       .+  ..+   ...+..++|+|+|+.|+++. ++.|++||+.+++... + ...++...+      
T Consensus        94 ~~d~~~g~-------~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-l-~~~~~~~~v~~g~~~  160 (719)
T 1z68_A           94 IYDLSNGE-------FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-I-TFNGRENKIFNGIPD  160 (719)
T ss_dssp             EEETTTTE-------ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CCCCBTTTEEESSCC
T ss_pred             EEECCCCc-------cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-E-ecCCCcCCeEccccc
Confidence            99998632       21  111   24588899999999999986 7899999998876543 1 112222222      


Q ss_pred             -----------EEEEEeeccccCCccEEEEeecCC----------------------------------cEEEEEeeecc
Q 037555          201 -----------TALSWVGLDRQKNHGFLAVGMESG----------------------------------VIELWSISVNR  235 (298)
Q Consensus       201 -----------~~~~~~~~~~~~~~~~l~~g~~dg----------------------------------~i~vwd~~~~~  235 (298)
                                 .+++|+|++     ..|++++.|.                                  .|++||+.++.
T Consensus       161 ~v~~ee~~~~~~~~~wSPDG-----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          161 WVYEEEMLATKYALWWSPNG-----KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             HHHHHHTTCSSCCEEECTTS-----SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             ceeeeecccCcccEEECCCC-----CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence                       489999999     7888877542                                  67788877652


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC----CcEEEeE
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD----NTVRVFQ  295 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~iw~  295 (298)
                      ....        ..+..-..+.+|...+.+++|+||+       .++++....    ..|.+||
T Consensus       236 ~~~~--------~~~~~~~~~~~~~~~~~~~~~SpD~-------~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          236 YVGP--------QEVPVPAMIASSDYYFSWLTWVTDE-------RVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             HHCC--------EECCCCHHHHTSCEEEEEEEESSSS-------EEEEEEEESSTTEEEEEEEE
T ss_pred             ccce--------eEccCCccCCCCcceEEEeEEeCCC-------eEEEEEeccccCeEEEEEEc
Confidence            1000        0000001123578889999999998       777774432    2377777

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=2.4e-17  Score=133.77  Aligned_cols=154  Identities=9%  Similarity=0.059  Sum_probs=112.3

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCC
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~  138 (298)
                      .+++++++.++++++     .++.|++||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+    
T Consensus         4 g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t----   74 (349)
T 1jmx_B            4 GPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT----   74 (349)
T ss_dssp             CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred             cccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC----
Confidence            456788888888885     48999999999998887776433 2578899999998654 555789999999876    


Q ss_pred             ccceeeeEEeecc------CCceEEEEEccCCCEEEEeeCC------------CeEEEEEccCCcceeeeeecCCCCCce
Q 037555          139 EIDYQLIARQEAH------KRIIWSCSWNPFGHEFATGSRD------------KTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       139 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                         .+....+...      ...+..++|+|+++++++++.+            +.|.+||+.+++....+..+. +...+
T Consensus        75 ---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~  150 (349)
T 1jmx_B           75 ---CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQV  150 (349)
T ss_dssp             ---TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred             ---CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcc
Confidence               3334433322      2236789999999999998865            899999998855433222332 33468


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      .+++|+|++     . +++++  +.|++||..+++
T Consensus       151 ~~~~~s~dg-----~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          151 YLMRAADDG-----S-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             CCEEECTTS-----C-EEEES--SSEEEECTTTCC
T ss_pred             cceeECCCC-----c-EEEcc--CcEEEEeCCCCc
Confidence            899999998     6 55543  349999987654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=5.3e-16  Score=136.79  Aligned_cols=212  Identities=9%  Similarity=-0.019  Sum_probs=139.5

Q ss_pred             eEEecc-----CCCceEEEEEcCCCCEEEeEeccCC-----CCceEEEEEEcCC------ceeeeccc-cccccEEEEEE
Q 037555           49 SHKLYG-----HGNELFSLCCDHQGKLVASSCKAQS-----TAAAEIWLWEVGS------WKAMGRLQ-SHSLTVTQIRF  111 (298)
Q Consensus        49 ~~~~~~-----h~~~v~~~~~s~~~~~l~~~~~~~~-----~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~  111 (298)
                      ...+..     |...+.+++|+|||+.|++++.+..     .....|++|++.+      ++.. .+. .+...+..++|
T Consensus       117 ~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~  195 (662)
T 3azo_A          117 PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRL  195 (662)
T ss_dssp             CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEE
T ss_pred             CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceE
Confidence            445555     6678899999999999998865210     0126899999987      5543 444 55677888999


Q ss_pred             cCCCCEEEEEeCC--------CeEEEEEec-cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEE
Q 037555          112 SHDDNLLLSVSRD--------RQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWA  180 (298)
Q Consensus       112 ~~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd  180 (298)
                      +|||++|+.++.+        ..|++||+. .+..    .........+...+..+.|+|++++++++..++  .|.+||
T Consensus       196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~----~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF----ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE----EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc----cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence            9999999887755        379999997 3210    022233334567899999999999778887788  566667


Q ss_pred             ccCCcceeeeeecCCCCCc--------eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeee
Q 037555          181 VENKSSVKQILALPPFNSS--------VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIR  252 (298)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  252 (298)
                      +.+++...   ....+...        +..++|+|++     .+++++.. +.++||.+....            .....
T Consensus       272 ~~~~~~~~---l~~~~~~~~~p~w~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~~d~~~------------~~~~~  330 (662)
T 3azo_A          272 PATGAATQ---LCRREEEFAGPLWTPGMRWFAPLANG-----LIAVVHGK-GAAVLGILDPES------------GELVD  330 (662)
T ss_dssp             TTTCCEEE---SSCCSSBSSCCCCSTTCCSEEECTTS-----CEEEEEBS-SSCEEEEEETTT------------TEEEE
T ss_pred             CCCCceee---cccccccccCccccccCceEeEeCCC-----EEEEEEEc-CccEEEEEECCC------------CcEEE
Confidence            65554332   12211111        4578888877     78888888 999999665321            22233


Q ss_pred             eccCCcccceEEEE-EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          253 FDPFACHVAAVNRM-AWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       253 ~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                         +..|...+..+ +++++.       .++++++.+....+|.+
T Consensus       331 ---l~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          331 ---AAGPWTEWAATLTVSGTR-------AVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             ---CCSSCCEEEEEEEEETTE-------EEEEEEETTEEEEEEEE
T ss_pred             ---ecCCCCeEEEEEecCCCE-------EEEEEcCCCCCCEEEEE
Confidence               33466677766 554443       45555566665666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=2.3e-16  Score=129.09  Aligned_cols=210  Identities=10%  Similarity=0.007  Sum_probs=137.9

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-Cceeeeccccc-cccEEEEEEcCCCCE--EEEEe--------
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSH-SLTVTQIRFSHDDNL--LLSVS--------  122 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~--------  122 (298)
                      ....+..++|+|+|++|++++.     + .|.+|++. +++........ .+.+..++|+|+|++  ++++.        
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~-----~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~  111 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAM-----K-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-----T-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEcc-----c-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence            3446889999999999988854     4 89999997 67654332210 122456899999984  44553        


Q ss_pred             -----CCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc-CCcceeeeeecC
Q 037555          123 -----RDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE-NKSSVKQILALP  194 (298)
Q Consensus       123 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~-~~~~~~~~~~~~  194 (298)
                           .++.+.+|++......   ...+..+. .+...+.+++|+|++++++++.. ++.|++||+. +++... +..+.
T Consensus       112 ~~~~~~~g~v~v~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~  187 (365)
T 1jof_A          112 NPFYKFAGYGNVFSVSETGKL---EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVD  187 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCE---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEE
T ss_pred             ceeecCCceEEEEccCCCCcC---cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEe
Confidence                 6899999999742110   11111111 24567899999999998887764 6899999998 554321 11222


Q ss_pred             --CCCCceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcce---eeeeccC----Ccccc---
Q 037555          195 --PFNSSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANI---IIRFDPF----ACHVA---  261 (298)
Q Consensus       195 --~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~---  261 (298)
                        .+...+..++|+|++     +++++++. ++.|.+|++.....           ..   ...+..+    .+|..   
T Consensus       188 ~~~~g~~p~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~~~g-----------~~~~~~~~~~~~~~~~~g~~~~~~  251 (365)
T 1jof_A          188 APDPGDHPRWVAMHPTG-----NYLYALMEAGNRICEYVIDPATH-----------MPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             CSSTTCCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTTTC-----------CEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             cCCCCCCCCEeEECCCC-----CEEEEEECCCCeEEEEEEeCCCC-----------cEEEccceEEcCCCCcCCcccccc
Confidence              235668999999998     67777664 78999998863110           11   1112111    12332   


Q ss_pred             ---eEEEEE-eecCCCCCCCcceEEEeeeCC-C-----cEEEeEec
Q 037555          262 ---AVNRMA-WKTHEKPKNSRTMQLASCGAD-N-----TVRVFQVN  297 (298)
Q Consensus       262 ---~v~~~~-~~~~~~~~~~~~~~l~s~~~d-~-----~i~iw~~~  297 (298)
                         .+..++ |+|++       ++|+++..+ +     .|.+|+++
T Consensus       252 ~~~~~~~i~~~spdG-------~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          252 KGLYRADVCALTFSG-------KYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             SBSEEEEEEEECTTS-------SEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cccccccEEEECCCC-------CEEEEECCCCCCCCCCeEEEEEEC
Confidence               688999 99999       676665532 3     89999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=7.9e-16  Score=124.11  Aligned_cols=203  Identities=16%  Similarity=0.167  Sum_probs=147.9

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeecc---------ccccccEEEEEEcC-CCCEEEEEe-
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRL---------QSHSLTVTQIRFSH-DDNLLLSVS-  122 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-  122 (298)
                      +-..+..++++|+|+++++.     ..++.|++|+..... .+..+         ..+-.....++++| +++++++.+ 
T Consensus        89 ~~~~p~gia~d~~g~l~v~d-----~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTD-----VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEE-----TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             ccCCceEEEECCCCCEEEEE-----CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence            44578899999999977777     447899999986432 34333         23444688999999 788888886 


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeec----------cCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEA----------HKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQIL  191 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~  191 (298)
                      .++.|++|+..        ...+..+..          +-.....++++|+ ++++++...+++|++||..+++.+..+ 
T Consensus       164 ~~~~I~~~~~~--------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-  234 (329)
T 3fvz_A          164 CNSRIVQFSPS--------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-  234 (329)
T ss_dssp             SCCEEEEECTT--------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-
T ss_pred             CCCeEEEEcCC--------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-
Confidence            69999999943        233333322          2234789999998 677777778899999999877776643 


Q ss_pred             ecCCCCCceEEEEEeeccccCCccEEEE-------eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555          192 ALPPFNSSVTALSWVGLDRQKNHGFLAV-------GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN  264 (298)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  264 (298)
                      ....+...+..++++| +     ..+.+       ...+..|++|+..++             +.+..+....++...+.
T Consensus       235 ~~~~~~~~~~~~~~~p-g-----~~~~~~g~~~v~~~~~~~v~~~~~~~g-------------~~~~~~~~~~~~~~~p~  295 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP-G-----FLFAVNGKPYFGDQEPVQGFVMNFSSG-------------EIIDVFKPVRKHFDMPH  295 (329)
T ss_dssp             CCTTTTTCEEEEEEET-T-----EEEEEECCCCTTCSCCCCEEEEETTTC-------------CEEEEECCSSSCCSSEE
T ss_pred             eccccCCCcceeeecC-C-----EEEEeCCCEEeccCCCcEEEEEEcCCC-------------eEEEEEcCCCCccCCee
Confidence            2234566788999999 4     23333       233458999998876             55555543345677789


Q ss_pred             EEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|+++|++       .++++...++.|++|++.
T Consensus       296 ~ia~~~dG-------~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          296 DIVASEDG-------TVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEECTTS-------EEEEEESSSCCEEEEEEE
T ss_pred             EEEECCCC-------CEEEEECCCCEEEEEeCC
Confidence            99999999       899999999999999874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=148.39  Aligned_cols=204  Identities=8%  Similarity=0.075  Sum_probs=132.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           58 ELFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .|.+++|||||++|++++....    +.++.|++||+.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            3899999999999998853110    126899999999887732111 124688899999999999886 7899999987


Q ss_pred             cCCCCccceeeeEE-eeccCCce-----------------EEEEEccCCCEEEEeeCCC---------------------
Q 037555          134 RTGTGEIDYQLIAR-QEAHKRII-----------------WSCSWNPFGHEFATGSRDK---------------------  174 (298)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg---------------------  174 (298)
                      .+..       ... ..++...|                 ..++|+|||++|++++.|.                     
T Consensus       139 ~g~~-------~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          139 GDPP-------FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             TSCC-------EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             CCCc-------EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            6431       111 11222212                 4899999999999987552                     


Q ss_pred             -------------eEEEEEccCCcce--eee---eecCCCCCceEEEEEeeccccCCccEEEEeecC----CcEEEEE--
Q 037555          175 -------------TVKIWAVENKSSV--KQI---LALPPFNSSVTALSWVGLDRQKNHGFLAVGMES----GVIELWS--  230 (298)
Q Consensus       175 -------------~i~~wd~~~~~~~--~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d----g~i~vwd--  230 (298)
                                   .|++||+.+++..  ..+   ..+..+...+.+++|+|++     .++++....    ..|.+||  
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-----~~~~~~~~~~~~~~~l~~~d~~  286 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-----RVCLQWLKRVQNVSVLSICDFR  286 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-----EEEEEEEESSTTEEEEEEEEEC
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-----eEEEEEeccccCeEEEEEEccc
Confidence                         7889999887642  111   0123467789999999997     677764433    2488888  


Q ss_pred             --eeecccccccCCCCCCcceeeeeccCCcccceEE-----EEEeecCCCCCCCcceEEE--eeeCCCcEEEe
Q 037555          231 --ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-----RMAWKTHEKPKNSRTMQLA--SCGADNTVRVF  294 (298)
Q Consensus       231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iw  294 (298)
                        ..+++....          ....  ...|...+.     .+.|+||+       ..|+  +...+|..+||
T Consensus       287 ~~~~~g~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~spdg-------~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          287 EDWQTWDCPKT----------QEHI--EESRTGWAGGFFVSTPVFSYDA-------ISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             SSSSSEECCGG----------GEEE--EECSSSCSSSSSCCCCEECTTS-------SCEEEEEECTTSCEEEE
T ss_pred             CCCCCCceEEE----------Eecc--cccCCceEccccCCccEECCCC-------CeEEEEEEccCCceEEE
Confidence              555422111          0000  023555555     78999999       5333  45566654444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=1.6e-16  Score=128.20  Aligned_cols=144  Identities=10%  Similarity=0.118  Sum_probs=106.9

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeecccccc-c-cEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeee
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-L-TVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      ++|++++     .++.|.+||+.+++.+..+.... . .+..++|+|+++.+ +++..++.|.+||+.+.       ..+
T Consensus         2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-------~~~   69 (337)
T 1pby_B            2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-------ETL   69 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-------CEE
T ss_pred             cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-------CeE
Confidence            4677774     48999999999998887776322 1 47889999999765 45566889999998763       333


Q ss_pred             EEeec-c----CCceEEEEEccCCCEEEEee------------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          146 ARQEA-H----KRIIWSCSWNPFGHEFATGS------------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       146 ~~~~~-~----~~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      ..+.. +    ...+..++|+|++++++++.            .++.|.+||+.+++....   +. ....+.+++|+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~-~~~~~~~~~~s~d  145 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA---FE-APRQITMLAWARD  145 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE---EE-CCSSCCCEEECTT
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE---Ee-CCCCcceeEECCC
Confidence            33332 1    22567899999999998886            579999999988776653   32 2445788999999


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecc
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNR  235 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~  235 (298)
                      +     .+|+++  ++.|++||+.+++
T Consensus       146 g-----~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B          146 G-----SKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             S-----SCEEEE--SSSEEEEETTTTE
T ss_pred             C-----CEEEEe--CCeEEEEECCCCc
Confidence            8     667766  6889999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=7.2e-17  Score=143.96  Aligned_cols=152  Identities=17%  Similarity=0.246  Sum_probs=112.2

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-----EEEEEEcCCCCEEEEEeCC--------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-----VTQIRFSHDDNLLLSVSRD--------  124 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d--------  124 (298)
                      ...++.|+|+|++++++       |+.|++||+.+++....+.+|...     ...+.|+|||++|+.++.+        
T Consensus        18 ~~~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            45689999999988886       789999999999877666666532     2447899999999998876        


Q ss_pred             -CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce---
Q 037555          125 -RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV---  200 (298)
Q Consensus       125 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v---  200 (298)
                       +.+.+||+.++       . ...+..+...+...+|+|||+.||.+. ++.|++||+.++.... + +..++...+   
T Consensus        91 ~~~~~~~d~~~~-------~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-l-t~~g~~~~~~~g  159 (740)
T 4a5s_A           91 TASYDIYDLNKR-------Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-I-TWTGKEDIIYNG  159 (740)
T ss_dssp             EEEEEEEETTTT-------E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CSCCBTTTEEES
T ss_pred             ceEEEEEECCCC-------c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-E-cCCCCccceecC
Confidence             56779999863       2 334556677899999999999999885 6899999998876433 1 222222222   


Q ss_pred             --------------EEEEEeeccccCCccEEEEeec-CCcEEEEEee
Q 037555          201 --------------TALSWVGLDRQKNHGFLAVGME-SGVIELWSIS  232 (298)
Q Consensus       201 --------------~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~  232 (298)
                                    ..+.|+|++     +.|+.++. ++.+.+|++.
T Consensus       160 ~~~~v~~ee~~~~~~~~~wSpDg-----~~la~~~~d~~~v~~~~~~  201 (740)
T 4a5s_A          160 ITDWVYEEEVFSAYSALWWSPNG-----TFLAYAQFNDTEVPLIEYS  201 (740)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTS-----SEEEEEEEECTTCCEEEEE
T ss_pred             cccccccchhcCCCcceEECCCC-----CEEEEEEEcccCCceEEEE
Confidence                          358999999     67777654 3446666553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=7.3e-16  Score=127.02  Aligned_cols=208  Identities=10%  Similarity=0.008  Sum_probs=141.9

Q ss_pred             ceEEeccCCCceEE-----EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe
Q 037555           48 ESHKLYGHGNELFS-----LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        48 ~~~~~~~h~~~v~~-----~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      ++..+..|......     .+|+|||+.|+.++..  .....|.+||+.+++.......+...+..+.|+||++.|+.++
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcC--CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence            45667777766666     8899999999988641  1123699999998888776666666666778999999999999


Q ss_pred             CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE--EccCCCEEEEe----------------------eCCCeEEE
Q 037555          123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS--WNPFGHEFATG----------------------SRDKTVKI  178 (298)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~i~~  178 (298)
                      .++.|++||+...       ........+...+....  ++|++.+++..                      ..+..|.+
T Consensus       100 ~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A          100 DGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             TTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CCCeEEEEECCCC-------cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            9999999999873       22333344444444333  48899888742                      24467999


Q ss_pred             EEccCCcceeeeeecCCCCCceEEEEEee-ccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceee
Q 037555          179 WAVENKSSVKQILALPPFNSSVTALSWVG-LDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIII  251 (298)
Q Consensus       179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  251 (298)
                      ||+.+++...    +..+...+..++|+| ++     ..|+....+      ..|.++|.....              ..
T Consensus       173 ~d~~~g~~~~----l~~~~~~~~~~~~sp~dg-----~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~  229 (388)
T 3pe7_A          173 VDLKTGESTV----ILQENQWLGHPIYRPYDD-----STVAFCHEGPHDLVDARMWLINEDGTN--------------MR  229 (388)
T ss_dssp             EETTTCCEEE----EEEESSCEEEEEEETTEE-----EEEEEEECSCTTTSSCSEEEEETTSCC--------------CE
T ss_pred             EECCCCceEE----eecCCccccccEECCCCC-----CEEEEEEecCCCCCcceEEEEeCCCCc--------------eE
Confidence            9999876433    223556789999999 88     677666543      367777765431              12


Q ss_pred             eeccCCccc--ceEEEEEeecCCCCCCCcceEEEeeeC-CC----cEEEeEec
Q 037555          252 RFDPFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGA-DN----TVRVFQVN  297 (298)
Q Consensus       252 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~----~i~iw~~~  297 (298)
                      .+.   .+.  ..+..+.|+||+       ..|+..+. ++    .|++||+.
T Consensus       230 ~l~---~~~~~~~~~~~~~spdg-------~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          230 KVK---THAEGESCTHEFWVPDG-------SALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             ESC---CCCTTEEEEEEEECTTS-------SCEEEEEEETTCCCEEEEEECTT
T ss_pred             Eee---eCCCCcccccceECCCC-------CEEEEEecCCCCCcceEEEEecC
Confidence            221   222  467889999999       55544332 22    38888864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=8.9e-15  Score=115.51  Aligned_cols=200  Identities=9%  Similarity=0.117  Sum_probs=140.6

Q ss_pred             CCCceEEEEE-cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           55 HGNELFSLCC-DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        55 h~~~v~~~~~-s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      |...+.++++ .+++.++++..    ..++.|.+|+ .+++.+..+. .+...+.+++++|+++++++...++.|.+|+.
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~----~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  149 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTER----SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ  149 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEEC----GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             cccCceEEEEEcCCCeEEEEcC----CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence            4457899999 46777666652    1268899999 4566665553 24457899999999998888888899999996


Q ss_pred             ccCCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          133 QRTGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ..        .....+.  .+...+..++++++++++++...++.|++||... +.+..+ ...++...+..+++++++ 
T Consensus       150 ~g--------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~g~~~~p~~i~~d~~G-  218 (286)
T 1q7f_A          150 NG--------NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI-GGEGITNYPIGVGINSNG-  218 (286)
T ss_dssp             TS--------CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE-SCTTTSCSEEEEEECTTC-
T ss_pred             CC--------CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE-ccCCccCCCcEEEECCCC-
Confidence            42        2233332  3345689999999998888777889999999754 333322 112223568899999988 


Q ss_pred             cCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          211 QKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       211 ~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                          .++++...++ .|.+|+.. +             +.+..+.. ......+.+++++|++       .++++ +.|+
T Consensus       219 ----~l~v~~~~~~~~i~~~~~~-g-------------~~~~~~~~-~~~~~~~~~i~~~~~g-------~l~vs-~~~~  271 (286)
T 1q7f_A          219 ----EILIADNHNNFNLTIFTQD-G-------------QLISALES-KVKHAQCFDVALMDDG-------SVVLA-SKDY  271 (286)
T ss_dssp             ----CEEEEECSSSCEEEEECTT-S-------------CEEEEEEE-SSCCSCEEEEEEETTT-------EEEEE-ETTT
T ss_pred             ----CEEEEeCCCCEEEEEECCC-C-------------CEEEEEcc-cCCCCcceeEEECCCC-------cEEEE-CCCC
Confidence                6777777775 99999853 2             33333321 1123347899999999       77777 5799


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      +|++|++.
T Consensus       272 ~v~v~~~~  279 (286)
T 1q7f_A          272 RLYIYRYV  279 (286)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEEcc
Confidence            99999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=3.8e-15  Score=120.13  Aligned_cols=217  Identities=12%  Similarity=0.073  Sum_probs=147.9

Q ss_pred             CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC-------------------CCceEEEEEEcCCceeeeccc-ccc
Q 037555           44 TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS-------------------TAAAEIWLWEVGSWKAMGRLQ-SHS  103 (298)
Q Consensus        44 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~-------------------~~d~~i~vw~~~~~~~~~~~~-~~~  103 (298)
                      ..||..   ...-+.|.+++++|+|+++++...+..                   ..++.|.+||..+++.+..+. .+-
T Consensus        14 ~~wp~~---~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~   90 (329)
T 3fvz_A           14 LDWPGV---YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF   90 (329)
T ss_dssp             TTCGGG---GCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC
T ss_pred             cCCchh---ceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc
Confidence            456653   223567999999999999988754100                   011479999998888766554 344


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe---------eccCCceEEEEEcc-CCCEEEEee-C
Q 037555          104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ---------EAHKRIIWSCSWNP-FGHEFATGS-R  172 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~  172 (298)
                      .....++++|+|+++++...++.|++|+.....      ..+..+         ..+-.....++++| +++++++.+ .
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence            578899999999988888889999999975321      022222         22334678999999 788777776 6


Q ss_pred             CCeEEEEEccCCcceeeeeec-------CCCCCceEEEEEeec-cccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555          173 DKTVKIWAVENKSSVKQILAL-------PPFNSSVTALSWVGL-DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP  244 (298)
Q Consensus       173 dg~i~~wd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  244 (298)
                      ++.|++||. ++..+..+...       ...-..+..++++|+ +     .++++...++.|++|+..++          
T Consensus       165 ~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-----~l~v~d~~~~~I~~~~~~~G----------  228 (329)
T 3fvz_A          165 NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-----QLCVADRENGRIQCFKTDTK----------  228 (329)
T ss_dssp             CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-----EEEEEETTTTEEEEEETTTC----------
T ss_pred             CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-----EEEEEECCCCEEEEEECCCC----------
Confidence            899999994 45544422111       112234789999998 5     67777778899999998755          


Q ss_pred             CCcceeeeeccCCcccceEEEEEeec------CCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          245 STANIIIRFDPFACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                         +.+..+. ...+...+..++|+|      ++       ..+++...+..|++|++
T Consensus       229 ---~~~~~~~-~~~~~~~~~~~~~~pg~~~~~~g-------~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          229 ---EFVREIK-HASFGRNVFAISYIPGFLFAVNG-------KPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             ---CEEEEEC-CTTTTTCEEEEEEETTEEEEEEC-------CCCTTCSCCCCEEEEET
T ss_pred             ---cEEEEEe-ccccCCCcceeeecCCEEEEeCC-------CEEeccCCCcEEEEEEc
Confidence               4444443 234566788899998      33       33333344557888874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=2.9e-16  Score=138.49  Aligned_cols=211  Identities=8%  Similarity=0.047  Sum_probs=140.5

Q ss_pred             eEEeccCCCceE---------EEEEc--CCCCE-EEeEeccCCCCceEEEEEEcC--C-ceeeecccc-----ccccEEE
Q 037555           49 SHKLYGHGNELF---------SLCCD--HQGKL-VASSCKAQSTAAAEIWLWEVG--S-WKAMGRLQS-----HSLTVTQ  108 (298)
Q Consensus        49 ~~~~~~h~~~v~---------~~~~s--~~~~~-l~~~~~~~~~~d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~  108 (298)
                      .+.+..|...+.         ...|+  |||+. |+.++.    .+..|.++++.  . ++ ...+..     |...+..
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~  134 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWAD  134 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccC
Confidence            556667776666         66665  99998 777642    35678888876  2 43 334444     6778899


Q ss_pred             EEEcCCCCEEEEEeCC----------CeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCC----
Q 037555          109 IRFSHDDNLLLSVSRD----------RQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRD----  173 (298)
Q Consensus       109 ~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----  173 (298)
                      ++|+|||+.|+.++.+          ..|++||+.......  ......+. .+...+..++|+|||++|+.++.+    
T Consensus       135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~  212 (662)
T 3azo_A          135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD--RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM  212 (662)
T ss_dssp             EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC--GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred             cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc--CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence            9999999999988876          589999987510000  01123334 455678889999999999988754    


Q ss_pred             ----CeEEEEEcc-CCc--ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc--EEEEEeeecccccccCCCC
Q 037555          174 ----KTVKIWAVE-NKS--SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV--IELWSISVNRTNDVSTPAP  244 (298)
Q Consensus       174 ----g~i~~wd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~  244 (298)
                          ..|++||+. ++.  ....  ....+...+..++|+|++     .+++++..++.  |++||..++.         
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~--l~~~~~~~~~~~~~spdg-----~l~~~~~~~~~~~l~~~~~~~~~---------  276 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRT--LLGGPEEAIAQAEWAPDG-----SLIVATDRTGWWNLHRVDPATGA---------  276 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEE--EEEETTBCEEEEEECTTS-----CEEEEECTTSSCEEEEECTTTCC---------
T ss_pred             CCCCcEEEEEEECCCCcccccEE--eCCCCCceEcceEECCCC-----eEEEEECCCCCeEEEEEECCCCc---------
Confidence                379999998 452  2221  222346788999999998     67788888884  4444443331         


Q ss_pred             CCcceeeeeccCCcccce--------EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          245 STANIIIRFDPFACHVAA--------VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          . ..+..  .+...        +.+++|+|++       .++++++. +.++||.++
T Consensus       277 ----~-~~l~~--~~~~~~~p~w~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          277 ----A-TQLCR--REEEFAGPLWTPGMRWFAPLANG-------LIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             ----E-EESSC--CSSBSSCCCCSTTCCSEEECTTS-------CEEEEEBS-SSCEEEEEE
T ss_pred             ----e-eeccc--ccccccCccccccCceEeEeCCC-------EEEEEEEc-CccEEEEEE
Confidence                1 11111  11111        4568888988       78899888 999999653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=2.8e-15  Score=133.74  Aligned_cols=173  Identities=10%  Similarity=0.092  Sum_probs=116.0

Q ss_pred             eEEeccCCCc-----eEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE
Q 037555           49 SHKLYGHGNE-----LFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL  119 (298)
Q Consensus        49 ~~~~~~h~~~-----v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  119 (298)
                      ...+.+|...     ...+.|||||++|+.++.+..    +..+.+.+||+.+++.. .+..|...+...+|+|||+.|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la  127 (740)
T 4a5s_A           49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA  127 (740)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE
T ss_pred             EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE
Confidence            4445555533     234789999999999864210    11267889999988764 4666788899999999999998


Q ss_pred             EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc-----------------eEEEEEccCCCEEEEeeCCC--------
Q 037555          120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-----------------IWSCSWNPFGHEFATGSRDK--------  174 (298)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~dg--------  174 (298)
                      .+. ++.|++|++..+...     .+ ...++...                 ...+.|+|||++|+.++.|.        
T Consensus       128 ~~~-~~~i~~~~~~~~~~~-----~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          128 YVW-NNDIYVKIEPNLPSY-----RI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             EEE-TTEEEEESSTTSCCE-----EC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             EEE-CCeEEEEECCCCceE-----EE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence            885 789999998764311     01 11122211                 23589999999999875321        


Q ss_pred             ----------------------------eEEEEEccC---CcceeeeeecC------CCCCceEEEEEeeccccCCccEE
Q 037555          175 ----------------------------TVKIWAVEN---KSSVKQILALP------PFNSSVTALSWVGLDRQKNHGFL  217 (298)
Q Consensus       175 ----------------------------~i~~wd~~~---~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l  217 (298)
                                                  .|++||+.+   ++..... .+.      ++...+..++|+|++     +++
T Consensus       201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg-----~~~  274 (740)
T 4a5s_A          201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQE-----RIS  274 (740)
T ss_dssp             EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETT-----EEE
T ss_pred             EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCC-----eEE
Confidence                                        478889887   6321111 222      266779999999998     555


Q ss_pred             EEeec----CCcEEEEEeeecc
Q 037555          218 AVGME----SGVIELWSISVNR  235 (298)
Q Consensus       218 ~~g~~----dg~i~vwd~~~~~  235 (298)
                      +....    +..|++||+.++.
T Consensus       275 ~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          275 LQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEeCCCCCEEEEEEEECCCCc
Confidence            55432    3479999998763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=6.9e-14  Score=110.36  Aligned_cols=200  Identities=7%  Similarity=0.071  Sum_probs=142.4

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc------cccccEEEEEE-cCCCCEEEEEeC-CC
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ------SHSLTVTQIRF-SHDDNLLLSVSR-DR  125 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-dg  125 (298)
                      ++-..+.++++++++.++++..     .++.|.+||.. ++.+..+.      ++...+..+++ .++++++++... ++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccCCCceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            4556799999999999888773     47899999987 55554443      24457889999 467776666643 88


Q ss_pred             eEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .|.+|+..        ...+..+. .+...+..++++|+++++++...++.|.+||.. ++....+ ....+...+..++
T Consensus       101 ~i~~~d~~--------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~p~~i~  170 (286)
T 1q7f_A          101 QIQIYNQY--------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF-GCSKHLEFPNGVV  170 (286)
T ss_dssp             EEEEECTT--------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-ECTTTCSSEEEEE
T ss_pred             EEEEECCC--------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe-CCCCccCCcEEEE
Confidence            99999943        23333332 234568899999999988877788999999965 3433322 1123445689999


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      +++++     .++++...++.|++|+...              ..+..+. ..++...+..|++++++       +++++
T Consensus       171 ~~~~g-----~l~v~~~~~~~i~~~~~~g--------------~~~~~~~-~~g~~~~p~~i~~d~~G-------~l~v~  223 (286)
T 1q7f_A          171 VNDKQ-----EIFISDNRAHCVKVFNYEG--------------QYLRQIG-GEGITNYPIGVGINSNG-------EILIA  223 (286)
T ss_dssp             ECSSS-----EEEEEEGGGTEEEEEETTC--------------CEEEEES-CTTTSCSEEEEEECTTC-------CEEEE
T ss_pred             ECCCC-----CEEEEECCCCEEEEEcCCC--------------CEEEEEc-cCCccCCCcEEEECCCC-------CEEEE
Confidence            99988     6777777789999999643              2333332 12234568899999998       78888


Q ss_pred             eeCCC-cEEEeEe
Q 037555          285 CGADN-TVRVFQV  296 (298)
Q Consensus       285 ~~~d~-~i~iw~~  296 (298)
                      ...++ .|++|+.
T Consensus       224 ~~~~~~~i~~~~~  236 (286)
T 1q7f_A          224 DNHNNFNLTIFTQ  236 (286)
T ss_dssp             ECSSSCEEEEECT
T ss_pred             eCCCCEEEEEECC
Confidence            87776 9999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=4.6e-15  Score=122.22  Aligned_cols=244  Identities=9%  Similarity=0.003  Sum_probs=152.8

Q ss_pred             eeecCcccccccCCCCCcee-----eeccCCCcccccccC-------CC--C----ceEEe-ccCCCceEEEEEcCCCCE
Q 037555           10 ERHGNDGLDTLESVPDAVPA-----VFTEPPIEDQLAWHT-------LW--P----ESHKL-YGHGNELFSLCCDHQGKL   70 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~-------~~--~----~~~~~-~~h~~~v~~~~~s~~~~~   70 (298)
                      +..+|..+..+..|......     ..++ |+++.++...       +|  +    ....+ .++...+..+.|+|+|+.
T Consensus        16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           16 DASTGAQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             cCCCCcceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            44567777778777765544     5666 5555544431       33  1    22233 345455557889999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEE--EcCCCCEEEEE----------------------eCCCe
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIR--FSHDDNLLLSV----------------------SRDRQ  126 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~  126 (298)
                      |+.++.     ++.|++||+.+++....+..+...+....  ++|++.+++..                      ..+..
T Consensus        95 l~~~~~-----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           95 LFYVKD-----GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             EEEEET-----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             EEEEeC-----CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            999953     67999999999887666555555554443  48999988743                      23467


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCC------CeEEEEEccCCcceeeeeecCCCC--
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRD------KTVKIWAVENKSSVKQILALPPFN--  197 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~--  197 (298)
                      |.+||+.++.        ...+..+...+..+.|+| +++.|+.+..+      ..|.++|.......    .+..+.  
T Consensus       170 l~~~d~~~g~--------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~  237 (388)
T 3pe7_A          170 LMRVDLKTGE--------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEG  237 (388)
T ss_dssp             EEEEETTTCC--------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTT
T ss_pred             EEEEECCCCc--------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCC
Confidence            8899987632        333445667789999999 99988887753      36888887765432    232233  


Q ss_pred             CceEEEEEeeccccCCccEEEE-eecCC----cEEEEEeeecccccccCCCCCCcceeeeeccCCcccce---EEEEEee
Q 037555          198 SSVTALSWVGLDRQKNHGFLAV-GMESG----VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA---VNRMAWK  269 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~-g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~  269 (298)
                      ..+..++|+|++     ..|+. +..++    .|++||+.+++.           ..+..+   .++...   ...+.|+
T Consensus       238 ~~~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~g~~-----------~~l~~~---~~~~~~~~~~~~~~~s  298 (388)
T 3pe7_A          238 ESCTHEFWVPDG-----SALVYVSYLKGSPDRFIYSADPETLEN-----------RQLTSM---PACSHLMSNYDGSLMV  298 (388)
T ss_dssp             EEEEEEEECTTS-----SCEEEEEEETTCCCEEEEEECTTTCCE-----------EEEEEE---CCEEEEEECTTSSEEE
T ss_pred             cccccceECCCC-----CEEEEEecCCCCCcceEEEEecCCCce-----------EEEEcC---CCceeeeecCCCCeEc
Confidence            357788999998     55544 43322    399999887632           122221   111111   1123699


Q ss_pred             cCCCCCCCcceEEEee---------eCCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASC---------GADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~---------~~d~~i~iw~~~  297 (298)
                      |++       ..|+..         ..+..|++||+.
T Consensus       299 pdg-------~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          299 GDG-------SDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EEE-------CCC------------CCCCEEEEEETT
T ss_pred             cCC-------CcceeEeeeccccccCCCCEEEEEecc
Confidence            998       555533         456689999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=3.7e-14  Score=125.99  Aligned_cols=209  Identities=8%  Similarity=-0.035  Sum_probs=138.7

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe-------
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-------  126 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  126 (298)
                      +|...+..++|||||++||.+....+.+...|++||+.+++.+.... ....+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            34456889999999999998865433333499999999988765322 2223678999999999999887765       


Q ss_pred             ---------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccC------Cc-
Q 037555          127 ---------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVEN------KS-  185 (298)
Q Consensus       127 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~------~~-  185 (298)
                               |++|++.+....   ...+.....+...+..+.|+|++++|+..+.     +..|++||+.+      +. 
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             ccccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                     999998764311   1122232334556789999999999888764     56899999986      42 


Q ss_pred             ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec-C---CcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-
Q 037555          186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME-S---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-  260 (298)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  260 (298)
                      ...   .+..+...+.. .|+|++     ..|+..+. +   +.|.+||+.+...           .....+.   .|. 
T Consensus       278 ~~~---~l~~~~~~~~~-~~s~dg-----~~l~~~s~~~~~~~~l~~~d~~~~~~-----------~~~~~l~---~~~~  334 (710)
T 2xdw_A          278 KWV---KLIDNFEGEYD-YVTNEG-----TVFTFKTNRHSPNYRLINIDFTDPEE-----------SKWKVLV---PEHE  334 (710)
T ss_dssp             CCE---EEECSSSSCEE-EEEEET-----TEEEEEECTTCTTCEEEEEETTSCCG-----------GGCEEEE---CCCS
T ss_pred             ceE---EeeCCCCcEEE-EEeccC-----CEEEEEECCCCCCCEEEEEeCCCCCc-----------ccceecc---CCCC
Confidence            233   23334444444 578887     44544443 3   3688888865421           0112221   232 


Q ss_pred             -ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          261 -AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       261 -~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                       ..+.+++|++++       .++++...|+..+||-+
T Consensus       335 ~~~~~~~~~~~~~-------~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          335 KDVLEWVACVRSN-------FLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             SCEEEEEEEETTT-------EEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEEcCC-------EEEEEEEECCEEEEEEE
Confidence             368889999777       78889988986655543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=1.4e-14  Score=117.72  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=128.9

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---------eee-ccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---------AMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      +++.+++++...++++|+.     + .+.+|++++.+         ... ....+.. |+.++|  ++++|+++ .++.|
T Consensus        39 ~~nlLais~~~gll~a~~~-----~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG-----S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET-----T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred             cccEEEEcCCCCEEEEeCC-----C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcE
Confidence            6899999999999999963     4 56679976543         111 1223556 999999  88999998 88999


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      ++||+....       .......+...+..+.+.+.  .+++++.||.|.+||+.+.....       +...|++++|+|
T Consensus       109 ~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp  172 (388)
T 1xip_A          109 YSLDLEELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN  172 (388)
T ss_dssp             EEEESSSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS
T ss_pred             EEEEchhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC
Confidence            999998743       23344556677888777654  38889999999999999766532       345799999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee------ccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF------DPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .+       ++.|..||.+++|+.......           ....+      .+..+|...|.+|.|.+++       .+
T Consensus       173 kG-------~~vg~~dg~i~~~~~~~~~~~-----------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-------~f  227 (388)
T 1xip_A          173 SQ-------LAVLLKDRSFQSFAWRNGEME-----------KQFEFSLPSELEELPVEEYSPLSVTILSPQ-------DF  227 (388)
T ss_dssp             SE-------EEEEETTSCEEEEEEETTEEE-----------EEEEECCCHHHHTSCTTTSEEEEEEESSSS-------EE
T ss_pred             Cc-------eEEEEcCCcEEEEcCCCcccc-----------ccceecCCcccccccCCCeeEEEEEEecCC-------eE
Confidence            86       577889999999988765210           02222      1112477899999999988       66


Q ss_pred             EEe
Q 037555          282 LAS  284 (298)
Q Consensus       282 l~s  284 (298)
                      |++
T Consensus       228 lv~  230 (388)
T 1xip_A          228 LAV  230 (388)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=1.6e-13  Score=110.68  Aligned_cols=213  Identities=14%  Similarity=0.063  Sum_probs=142.4

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---  124 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  124 (298)
                      ....+..+...+.+++|+++|++++++     ..++.|.+||..+++.......+...+.+++++|+++++++...+   
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~  110 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLD-----VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS  110 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEE-----CCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence            345566777788999999999977777     447899999998776654443456789999999999988877766   


Q ss_pred             -CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCC
Q 037555          125 -RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       125 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                       +.|.+||......     ........+...+..++++|+++++++...      .+.|..+|..+.+... +   ....
T Consensus       111 ~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~  181 (333)
T 2dg1_A          111 TGGIFAATENGDNL-----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-I---IQNI  181 (333)
T ss_dssp             CCEEEEECTTSCSC-----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-E---EEEE
T ss_pred             CceEEEEeCCCCEE-----EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-e---ecCC
Confidence             6899999775321     101111123456899999999987776653      3556666665443322 1   1123


Q ss_pred             CceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCccee--eeeccCCcccceEEEEEeecCCCC
Q 037555          198 SSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANII--IRFDPFACHVAAVNRMAWKTHEKP  274 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~  274 (298)
                      ..+..++|+|++     ..| ++...++.|.+|++.......         ...  ..+..+.++ ..+..+++++++  
T Consensus       182 ~~~~~i~~~~dg-----~~l~v~~~~~~~i~~~d~~~~g~~~---------~~~~~~~~~~~~~~-~~~~~i~~d~~G--  244 (333)
T 2dg1_A          182 SVANGIALSTDE-----KVLWVTETTANRLHRIALEDDGVTI---------QPFGATIPYYFTGH-EGPDSCCIDSDD--  244 (333)
T ss_dssp             SSEEEEEECTTS-----SEEEEEEGGGTEEEEEEECTTSSSE---------EEEEEEEEEECCSS-SEEEEEEEBTTC--
T ss_pred             CcccceEECCCC-----CEEEEEeCCCCeEEEEEecCCCcCc---------ccccceEEEecCCC-CCCCceEECCCC--
Confidence            457889999988     544 555567899999986421000         000  111112222 467889999998  


Q ss_pred             CCCcceEEEeeeCCCcEEEeEe
Q 037555          275 KNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       275 ~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                           +++++...++.|.+||.
T Consensus       245 -----~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          245 -----NLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             -----CEEEEEETTTEEEEECT
T ss_pred             -----CEEEEEcCCCEEEEECC
Confidence                 77777777889999975

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=4.9e-14  Score=114.28  Aligned_cols=189  Identities=12%  Similarity=0.117  Sum_probs=122.2

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC------------
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD------------  124 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  124 (298)
                      ..+..+.|+|+|+.|+..+.+.......|.+|++.+++...... +.. +..++|+||++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            46888999999999998865321124568899998877655444 334 9999999999988887642            


Q ss_pred             ---------------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-------eEEEEEcc
Q 037555          125 ---------------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-------TVKIWAVE  182 (298)
Q Consensus       125 ---------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~~wd~~  182 (298)
                                     ..|.+||+..+       ..+..+.. . .+..+.|+|++ +++++..++       ...+|.+.
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~-------~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESE-------EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTT-------EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCC-------eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence                           56888888752       22233333 3 67889999999 777776542       34555544


Q ss_pred             CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC--------CcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555          183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES--------GVIELWSISVNRTNDVSTPAPSTANIIIRFD  254 (298)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
                      +++ ...+   ..+ ..+..+  +|++     ..|+.++.+        ..|.+||  ++             .. ..+ 
T Consensus       207 ~~~-~~~l---~~~-~~~~~~--spdg-----~~l~~~~~~~~~~~~~~~~l~~~d--~~-------------~~-~~l-  257 (347)
T 2gop_A          207 DGK-EEKM---FEK-VSFYAV--DSDG-----ERILLYGKPEKKYMSEHNKLYIYD--GK-------------EV-MGI-  257 (347)
T ss_dssp             TTE-EEEE---EEE-ESEEEE--EECS-----SCEEEEECCSSSCCCSSCEEEEEC--SS-------------CE-EES-
T ss_pred             CCc-eEEe---ccC-cceeeE--CCCC-----CEEEEEEccccCCccccceEEEEC--CC-------------ce-Eec-
Confidence            333 3322   222 344443  8888     566665543        3677777  32             21 121 


Q ss_pred             cCCcccceEEE-EEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          255 PFACHVAAVNR-MAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       255 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       ...+...+.. +.|+ +        .++++++.++.++|| ++
T Consensus       258 -~~~~~~~~~~~~~~s-d--------g~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          258 -LDEVDRGVGQAKIKD-G--------KVYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             -STTCCSEEEEEEEET-T--------EEEEEEEETTEEEEE-EE
T ss_pred             -cccCCcccCCccEEc-C--------cEEEEEecCCcEEEE-Ec
Confidence             2345667776 8887 5        377888888999998 63

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=4.7e-14  Score=125.01  Aligned_cols=209  Identities=10%  Similarity=-0.051  Sum_probs=139.0

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-ec-cccccccEEEEEEcCCCCEEEEEeCCCe-----
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQ-----  126 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----  126 (298)
                      +|...+..++|||||++||.+....++++..|++||+.+++.+ .. +..  .....++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4556799999999999999765433345689999999988765 21 211  11267999999999999988776     


Q ss_pred             --------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCcceeeeeecC
Q 037555          127 --------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       127 --------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~  194 (298)
                              |++|++.+....   ..++.....+...+..+.|+|++++|+..+.++    .|.++|..++.. .   .+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~l~  268 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-R---LLV  268 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-E---EEE
T ss_pred             ccCCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-E---Eee
Confidence                    999998764311   123333344556788999999999988887665    677776654433 3   222


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                      .+...+....+ +++     .+++.+.   .++.|.+||+.++...           ....+.. ......+.+++|+ +
T Consensus       269 ~~~~~~~~~~~-~~g-----~l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~-~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKD-----RFYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVP-EDSSASLLSVSIV-G  329 (695)
T ss_dssp             ECSSCCEEEEE-ETT-----EEEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEEC-CCSSCEEEEEEEE-T
T ss_pred             cCCCceEEEEe-cCC-----cEEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEec-CCCCCeEEEEEEE-C
Confidence            23445555555 665     5444433   2578999998664210           0112211 1124568888998 5


Q ss_pred             CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          272 EKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +       .++++...|+..+||.++
T Consensus       330 ~-------~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          330 G-------HLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             T-------EEEEEEEETTEEEEEEEE
T ss_pred             C-------EEEEEEEECCEEEEEEEe
Confidence            5       789999999999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=4e-15  Score=122.78  Aligned_cols=239  Identities=7%  Similarity=-0.063  Sum_probs=147.5

Q ss_pred             eeecCcccccccCCCCC-----ceeeeccCCCccccccc-------CCC------CceEEeccCCCceE-EEEEcCCCCE
Q 037555           10 ERHGNDGLDTLESVPDA-----VPAVFTEPPIEDQLAWH-------TLW------PESHKLYGHGNELF-SLCCDHQGKL   70 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~h~~~v~-~~~~s~~~~~   70 (298)
                      +..+|..+..+..+...     +..+.++ |+++.++..       .+|      .....+..+...+. .+.|+|+|+.
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~   94 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA   94 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence            45667666666655443     5666676 555554432       122      12334444443333 4789999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEE-------------------EEEcCCCCEEEEE-----eCCCe
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQ-------------------IRFSHDDNLLLSV-----SRDRQ  126 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~  126 (298)
                      |+.++.     ++.|++|++.+++.......+......                   +.|+|+++.++..     ..+..
T Consensus        95 l~~~~~-----~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A           95 FFYVKN-----ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR  169 (396)
T ss_dssp             EEEEET-----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred             EEEEEc-----CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence            998854     668999999887765444433332222                   3567777766554     35678


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCC------CeEEEEEccCCcceeeeeecCCC--C
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRD------KTVKIWAVENKSSVKQILALPPF--N  197 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~--~  197 (298)
                      |.+||+..+.       . ..+..+...+..+.|+| ++..|+..+.+      ..|.+||+...+...    +..+  .
T Consensus       170 l~~~d~~~g~-------~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~  237 (396)
T 3c5m_A          170 LIKVDIETGE-------L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEG  237 (396)
T ss_dssp             EEEEETTTCC-------E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTT
T ss_pred             EEEEECCCCc-------E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCC
Confidence            8999987632       2 22234667789999999 78877776643      368888887654322    2222  2


Q ss_pred             CceEEEEEeeccccCCccEEEEeecC-----CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-C
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGMES-----GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-H  271 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  271 (298)
                      ..+..++|+|++     ..|+.++.+     +.|++||+.++.             .. .+....+    .. +.|+| +
T Consensus       238 ~~~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~g~-------------~~-~l~~~~~----~~-~~~s~~d  293 (396)
T 3c5m_A          238 ESCTHEFWIPDG-----SAMAYVSYFKGQTDRVIYKANPETLE-------------NE-EVMVMPP----CS-HLMSNFD  293 (396)
T ss_dssp             EEEEEEEECTTS-----SCEEEEEEETTTCCEEEEEECTTTCC-------------EE-EEEECCS----EE-EEEECSS
T ss_pred             ccccceEECCCC-----CEEEEEecCCCCccceEEEEECCCCC-------------eE-EeeeCCC----CC-CCccCCC
Confidence            357889999998     556555433     349999987652             11 1111212    22 88999 9


Q ss_pred             CCCCCCcceEEEeee----------------CCCcEEEeEec
Q 037555          272 EKPKNSRTMQLASCG----------------ADNTVRVFQVN  297 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~----------------~d~~i~iw~~~  297 (298)
                      +       .+|++++                .+..|++||+.
T Consensus       294 g-------~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          294 G-------SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             S-------SEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             C-------ceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            8       6777654                34678888863

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=3.2e-13  Score=109.52  Aligned_cols=193  Identities=10%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCC----------------------CCceEEEEEEcCCceeeeccccccccEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQS----------------------TAAAEIWLWEVGSWKAMGRLQSHSLTVT  107 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~----------------------~~d~~i~vw~~~~~~~~~~~~~~~~~v~  107 (298)
                      ..+..+.. +..++|+|+|+.|+.++.+..                      .....|++|++.+++.+..+.. . .+.
T Consensus        98 ~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~  174 (347)
T 2gop_A           98 KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS  174 (347)
T ss_dssp             EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC
T ss_pred             EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc
Confidence            33444444 899999999999998864200                      0136899999988876455554 3 788


Q ss_pred             EEEEcCCCCEEEEEeCCC-------eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-------
Q 037555          108 QIRFSHDDNLLLSVSRDR-------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-------  173 (298)
Q Consensus       108 ~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  173 (298)
                      .+.|+|+| +++++..++       ...+|.+..       ... ..+..+ ..+..+  +|+++.|+.++.+       
T Consensus       175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-------~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~  242 (347)
T 2gop_A          175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-------GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSE  242 (347)
T ss_dssp             EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-------TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCS
T ss_pred             cccCCCCe-EEEEEecccccccccccccEEEeCC-------Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccc
Confidence            99999999 777776542       455665552       121 222223 444444  9999988887754       


Q ss_pred             -CeEEEEEccCCcceeeeeecCCCCCceEE-EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555          174 -KTVKIWAVENKSSVKQILALPPFNSSVTA-LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII  251 (298)
Q Consensus       174 -g~i~~wd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  251 (298)
                       ..|.+||  +++...   ....+...+.. +.|+ +      .++++++.++.++|| +.++             .. .
T Consensus       243 ~~~l~~~d--~~~~~~---l~~~~~~~~~~~~~~s-d------g~~~~~~~~~~~~l~-~~~g-------------~~-~  295 (347)
T 2gop_A          243 HNKLYIYD--GKEVMG---ILDEVDRGVGQAKIKD-G------KVYFTLFEEGSVNLY-IWDG-------------EI-K  295 (347)
T ss_dssp             SCEEEEEC--SSCEEE---SSTTCCSEEEEEEEET-T------EEEEEEEETTEEEEE-EESS-------------SE-E
T ss_pred             cceEEEEC--CCceEe---ccccCCcccCCccEEc-C------cEEEEEecCCcEEEE-EcCC-------------ce-E
Confidence             3688888  443322   33445667776 8887 4      378888899999999 8733             22 2


Q ss_pred             eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE-EEeEe
Q 037555          252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV-RVFQV  296 (298)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i-~iw~~  296 (298)
                      .+.   .+...|.+++|+| .        ++++++.++.. .+|.+
T Consensus       296 ~~~---~~~~~v~~~~~s~-~--------~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          296 PIA---KGRHWIMGFDVDE-I--------VVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEE---CSSSEEEEEEESS-S--------EEEEEECSSSCCEEEEE
T ss_pred             EEe---cCCCeEEeeeeeC-c--------EEEEEcCCCChHHheEe
Confidence            221   2467899999999 6        55666656554 77765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=1.4e-13  Score=109.26  Aligned_cols=205  Identities=12%  Similarity=0.082  Sum_probs=137.3

Q ss_pred             ceEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      .+..+..+.....+++|+|+++ +++++     ..++.|.+|+..++  ...+..+...+.+++++|+|+++++...++.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSD-----VRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEE-----GGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEe-----CCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            3455666677788999999998 66666     34789999999876  5556667778999999999998887777789


Q ss_pred             EEEEEeccCCCCccceeeeEE-ee-ccCCceEEEEEccCCCEEEE----ee-------------CCCeEEEEEccCCcce
Q 037555          127 FSVFAIQRTGTGEIDYQLIAR-QE-AHKRIIWSCSWNPFGHEFAT----GS-------------RDKTVKIWAVENKSSV  187 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~~wd~~~~~~~  187 (298)
                      |.+||..++.     ...+.. .. .....+..++++|+++++++    ++             ..+.|..++.. ++ .
T Consensus        92 i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~  164 (296)
T 3e5z_A           92 LERQREPGGE-----WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-L  164 (296)
T ss_dssp             EEEECSTTCC-----EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-E
T ss_pred             EEEEcCCCCc-----EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-E
Confidence            9999986532     111111 11 11234678999999998887    33             13456666554 32 2


Q ss_pred             eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee-ecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555          188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS-VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM  266 (298)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  266 (298)
                      .   .+.........++|+|++     ..+++.+.++.|++|++. .+...          .....+   ..+...+..+
T Consensus       165 ~---~~~~~~~~~~gi~~s~dg-----~~lv~~~~~~~i~~~~~~~~g~~~----------~~~~~~---~~~~~~p~~i  223 (296)
T 3e5z_A          165 S---APIRDRVKPNGLAFLPSG-----NLLVSDTGDNATHRYCLNARGETE----------YQGVHF---TVEPGKTDGL  223 (296)
T ss_dssp             E---EEECCCSSEEEEEECTTS-----CEEEEETTTTEEEEEEECSSSCEE----------EEEEEE---CCSSSCCCSE
T ss_pred             E---EeecCCCCCccEEECCCC-----CEEEEeCCCCeEEEEEECCCCcCc----------CCCeEe---eCCCCCCCeE
Confidence            2   222345567899999998     566777778999999986 22100          001112   1244556778


Q ss_pred             EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          267 AWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ++++++       +++++.  ++.|.+|+.
T Consensus       224 ~~d~~G-------~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          224 RVDAGG-------LIWASA--GDGVHVLTP  244 (296)
T ss_dssp             EEBTTS-------CEEEEE--TTEEEEECT
T ss_pred             EECCCC-------CEEEEc--CCeEEEECC
Confidence            898888       665555  677888874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.3e-15  Score=124.20  Aligned_cols=199  Identities=8%  Similarity=0.019  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      +..++|+|+|+.|+.....  ..+..|.+|++.+++.......+......+.|+|||+.|+.++.++.|++|++....  
T Consensus        38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred             eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--
Confidence            7788999999998877542  124589999998887654443333323347899999999999999999999987632  


Q ss_pred             ccceeeeEEeeccCCceEE-------------------EEEccCCCEEEEe-----eCCCeEEEEEccCCcceeeeeecC
Q 037555          139 EIDYQLIARQEAHKRIIWS-------------------CSWNPFGHEFATG-----SRDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                           .......+......                   +.|+|+++.++..     ..+..|.+||+.+++....    .
T Consensus       114 -----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~----~  184 (396)
T 3c5m_A          114 -----EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI----H  184 (396)
T ss_dssp             -----EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE----E
T ss_pred             -----cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee----c
Confidence                 22222222221111                   3456777666544     3566899999988765431    1


Q ss_pred             CCCCceEEEEEee-ccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555          195 PFNSSVTALSWVG-LDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA  267 (298)
Q Consensus       195 ~~~~~v~~~~~~~-~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  267 (298)
                      .+...+..+.|+| ++     ..|+..+.+      ..|.+|++....              ...+.. ......+..+.
T Consensus       185 ~~~~~~~~~~~sp~dg-----~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~~l~~-~~~~~~~~~~~  244 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDD-----STVGFCHEGPHDLVDARMWLVNEDGSN--------------VRKIKE-HAEGESCTHEF  244 (396)
T ss_dssp             EESSCEEEEEEETTEE-----EEEEEEECSCSSSCSCCCEEEETTSCC--------------CEESSC-CCTTEEEEEEE
T ss_pred             cCCcccccceECCCCC-----CEEEEEecCCCCCCCceEEEEECCCCc--------------eeEeec-cCCCccccceE
Confidence            3566788999999 66     556555443      357777765431              112211 01134688899


Q ss_pred             eecCCCCCCCcceEEEeeeCC-----CcEEEeEec
Q 037555          268 WKTHEKPKNSRTMQLASCGAD-----NTVRVFQVN  297 (298)
Q Consensus       268 ~~~~~~~~~~~~~~l~s~~~d-----~~i~iw~~~  297 (298)
                      |+|++       .+|+.++.+     +.|++||+.
T Consensus       245 ~spdg-------~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          245 WIPDG-------SAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             ECTTS-------SCEEEEEEETTTCCEEEEEECTT
T ss_pred             ECCCC-------CEEEEEecCCCCccceEEEEECC
Confidence            99999       666666543     448999863

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=4e-13  Score=109.60  Aligned_cols=84  Identities=7%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCCCE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDDNL  117 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~  117 (298)
                      +..+..+..+  .++|+|+|++|+++...     ++..++.|.+||..+++.+..+...      ......++++|||++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            4555555555  89999999999988520     0013678999999988887776532      234567999999999


Q ss_pred             EEEEeC--CCeEEEEEecc
Q 037555          118 LLSVSR--DRQFSVFAIQR  134 (298)
Q Consensus       118 l~~~~~--dg~i~iwd~~~  134 (298)
                      |+++..  ++.|.+||+.+
T Consensus       122 l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             EEEEEESSSEEEEEEETTT
T ss_pred             EEEECCCCCCeEEEEECCC
Confidence            998874  58999999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=6.2e-13  Score=105.46  Aligned_cols=229  Identities=10%  Similarity=0.044  Sum_probs=145.3

Q ss_pred             CcccccccCCCCCceeeeccCCCcc-ccccc----C--CCC---ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIED-QLAWH----T--LWP---ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA   83 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~----~--~~~---~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~   83 (298)
                      +..+..+..+......+++. |.+. .+...    .  .|+   ....+..+...+.+++++++|+++++.     ..++
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~-----~~~~   90 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACS-----HGLR   90 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEE-----TTTT
T ss_pred             CCcEEEEecCCccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEe-----cCCC
Confidence            44455555555566677777 4444 22222    1  121   145566677789999999999988776     3467


Q ss_pred             EEEEEEcCCceeeeccccc----cccEEEEEEcCCCCEEEEEeC-----------------CCeEEEEEeccCCCCccce
Q 037555           84 EIWLWEVGSWKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSR-----------------DRQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~  142 (298)
                      .|.+||..+++........    ...+..++++|+|+++++.+.                 .+.|..++..  .      
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g------  162 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G------  162 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S------
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C------
Confidence            8999999777654332211    234568999999998887321                 2344444432  1      


Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      . ...+..+......++|+|+++.+++.+.++.|.+||+. ++........+......+..+++++++     .++++. 
T Consensus       163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-----~l~v~~-  235 (296)
T 3e5z_A          163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-----LIWASA-  235 (296)
T ss_dssp             C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-----CEEEEE-
T ss_pred             C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-----CEEEEc-
Confidence            1 22233455667899999999988777778999999997 333201111222345567789999988     555554 


Q ss_pred             cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCcceEEEeeeCCC
Q 037555          222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~l~s~~~d~  289 (298)
                       ++.|.+|+.. +             +.+..+.   .+.. +.+++|. |++       ..|+.++.++
T Consensus       236 -~~~v~~~~~~-g-------------~~~~~~~---~~~~-~~~~~f~~~d~-------~~L~v~t~~~  278 (296)
T 3e5z_A          236 -GDGVHVLTPD-G-------------DELGRVL---TPQT-TSNLCFGGPEG-------RTLYMTVSTE  278 (296)
T ss_dssp             -TTEEEEECTT-S-------------CEEEEEE---CSSC-CCEEEEESTTS-------CEEEEEETTE
T ss_pred             -CCeEEEECCC-C-------------CEEEEEE---CCCC-ceeEEEECCCC-------CEEEEEcCCe
Confidence             7889999975 3             3334433   2444 8899994 777       6777777664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=1.7e-13  Score=107.12  Aligned_cols=198  Identities=7%  Similarity=-0.061  Sum_probs=138.5

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ...+.+++++++|+++++.     . ++.|.+|+................+..++++++++++++...++.|.+|+....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~-----~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTD-----F-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEE-----T-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC
T ss_pred             cCCcceeEECCCCCEEEEc-----C-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc
Confidence            3568899999999966665     3 678999998755432222223356899999999998888777889999965431


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG  215 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (298)
                             ............+..++++++++++++...++.|.+||........   ........+.++++.+++     .
T Consensus       140 -------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~~g-----~  204 (270)
T 1rwi_B          140 -------TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAG-----T  204 (270)
T ss_dssp             -------SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTC-----C
T ss_pred             -------eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECCCC-----C
Confidence                   1111111223456889999999877777778899999987655432   222233568899999987     5


Q ss_pred             EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ++++...++.|.+|+.....             ... .  ...+...+.++++++++       +++++...++.|++++
T Consensus       205 l~v~~~~~~~v~~~~~~~~~-------------~~~-~--~~~~~~~p~~i~~~~~g-------~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          205 VYVTEHNTNQVVKLLAGSTT-------------STV-L--PFTGLNTPLAVAVDSDR-------TVYVADRGNDRVVKLT  261 (270)
T ss_dssp             EEEEETTTSCEEEECTTCSC-------------CEE-C--CCCSCSCEEEEEECTTC-------CEEEEEGGGTEEEEEC
T ss_pred             EEEEECCCCcEEEEcCCCCc-------------cee-e--ccCCCCCceeEEECCCC-------CEEEEECCCCEEEEEc
Confidence            77777678899999875431             111 1  11233568899999999       8888888999999998


Q ss_pred             ec
Q 037555          296 VN  297 (298)
Q Consensus       296 ~~  297 (298)
                      +.
T Consensus       262 ~~  263 (270)
T 1rwi_B          262 SL  263 (270)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=2e-12  Score=114.91  Aligned_cols=209  Identities=10%  Similarity=0.068  Sum_probs=132.2

Q ss_pred             eEEEEEcCCCCEEEeEeccCC-----------CCceEEEEEEcCCceee--e--ccccccccEEEEEEcCCCCEEEEEeC
Q 037555           59 LFSLCCDHQGKLVASSCKAQS-----------TAAAEIWLWEVGSWKAM--G--RLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~-----------~~d~~i~vw~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      +..++|+|||+.|+.++.+..           .....|++|++.+++..  .  ....|...+..+.|+|||++|+..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            667999999999999876322           11345999999876532  2  22235566889999999998887765


Q ss_pred             -----CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCcc--eeeeee
Q 037555          124 -----DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKSS--VKQILA  192 (298)
Q Consensus       124 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~--~~~~~~  192 (298)
                           +..|.+||+...............+..+...+.. .|+|++..|+..+..    +.|.+||+.+...  ...+  
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--  329 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL--  329 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE--
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec--
Confidence                 5689999987510000000023344445555544 488888888776653    3699999987642  2322  


Q ss_pred             cCCCC-CceEEEEEeeccccCCccEEEEeecCCcEEE--EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          193 LPPFN-SSVTALSWVGLDRQKNHGFLAVGMESGVIEL--WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       193 ~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                      +.... ..+..++|++.+     .++++...++..+|  |++.++             .....+.   .+...|..+.++
T Consensus       330 ~~~~~~~~~~~~~~~~~~-----~lv~~~~~~g~~~l~~~~~~~g-------------~~~~~l~---~~~~~v~~~~~s  388 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSN-----FLVLCYLHDVKNTLQLHDLATG-------------ALLKIFP---LEVGSVVGYSGQ  388 (710)
T ss_dssp             ECCCSSCEEEEEEEETTT-----EEEEEEEETTEEEEEEEETTTC-------------CEEEEEC---CCSSEEEEEECC
T ss_pred             cCCCCCCeEEEEEEEcCC-----EEEEEEEECCEEEEEEEECCCC-------------CEEEecC---CCCceEEEEecC
Confidence            22222 367888998665     68888888886555  454333             3333332   356788899999


Q ss_pred             cCCCCCCCcceEEEeee---CCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASCG---ADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~---~d~~i~iw~~~  297 (298)
                      |+++      .++++.+   ..+.|..||+.
T Consensus       389 ~d~~------~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          389 KKDT------EIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             TTCS------EEEEEEECSSCCCEEEEEETT
T ss_pred             CCCC------EEEEEEeCCCCCCEEEEEECC
Confidence            9872      3433333   35678888863

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=2.1e-12  Score=115.26  Aligned_cols=207  Identities=14%  Similarity=0.055  Sum_probs=132.9

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe--------
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ--------  126 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------  126 (298)
                      |...+..++|||||++||.+..+.+.+...|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999988654333336899999999887543 112223367899999 98888876654        


Q ss_pred             ------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-----eEEEEEccCC--cceeeeeec
Q 037555          127 ------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-----TVKIWAVENK--SSVKQILAL  193 (298)
Q Consensus       127 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~--~~~~~~~~~  193 (298)
                            |++|++.+....   ...+.....+...+..+.|+|+|++|+..+.++     .|++||+.++  +...   .+
T Consensus       239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l  312 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---AL  312 (741)
T ss_dssp             CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EE
T ss_pred             CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---Ee
Confidence                  888887653210   122322223334588999999999888877543     7999999876  3123   22


Q ss_pred             CCCCCceEEEEEeeccccCCccEEEEeec----CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555          194 PPFNSSVTALSWVGLDRQKNHGFLAVGME----SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK  269 (298)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (298)
                      ..+...+.... .|++     ..|+..+.    ++.|.+||+.+.. .          .....+   ..+...+.++.|+
T Consensus       313 ~~~~~~~~~~~-~~dg-----~~l~~~s~~~~~~~~l~~~d~~~~~-~----------~~~~l~---~~~~~~l~~~~~~  372 (741)
T 1yr2_A          313 IPDLKAQWDFV-DGVG-----DQLWFVSGDGAPLKKIVRVDLSGST-P----------RFDTVV---PESKDNLESVGIA  372 (741)
T ss_dssp             ECSSSSCEEEE-EEET-----TEEEEEECTTCTTCEEEEEECSSSS-C----------EEEEEE---CCCSSEEEEEEEE
T ss_pred             cCCCCceEEEE-eccC-----CEEEEEECCCCCCCEEEEEeCCCCc-c----------ccEEEe---cCCCCeEEEEEEE
Confidence            22333444443 4777     55665554    3458888876531 0          111121   2344567778887


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                       ++       .++++...|+..+||.++
T Consensus       373 -~~-------~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          373 -GN-------RLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             -BT-------EEEEEEEETTEEEEEEEE
T ss_pred             -CC-------EEEEEEEECCEEEEEEEe
Confidence             44       688898999998888654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=1.1e-12  Score=102.48  Aligned_cols=196  Identities=8%  Similarity=-0.035  Sum_probs=131.5

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      ...+++++++|++++++.    ..++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||..... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSE----GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEEC----SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-
T ss_pred             CccceEECCCCCEEEEcc----CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-
Confidence            678999999999776232    2478899999865543322222335678899999998666665 8899999976421 


Q ss_pred             CccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          138 GEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                             ...+. .....+..++++++++.+++...++.|.+|+..+.....   ........+.++++++++     .+
T Consensus        99 -------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g-----~l  163 (270)
T 1rwi_B           99 -------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LPFTGLNDPDGVAVDNSG-----NV  163 (270)
T ss_dssp             -------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---CCCCSCCSCCCEEECTTC-----CE
T ss_pred             -------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---eccccCCCceeEEEeCCC-----CE
Confidence                   11121 223567899999999877777778899999765543322   122223457889999987     66


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      +++...++.|.+|+.....             ....   ...+...+..|++++++       .++++...++.|.+|+.
T Consensus       164 ~v~~~~~~~i~~~~~~~~~-------------~~~~---~~~~~~~p~~i~~d~~g-------~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNN-------------QVVL---PFTDITAPWGIAVDEAG-------TVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCC-------------EEEC---CCSSCCSEEEEEECTTC-------CEEEEETTTSCEEEECT
T ss_pred             EEEECCCCEEEEEecCCCc-------------eEee---cccCCCCceEEEECCCC-------CEEEEECCCCcEEEEcC
Confidence            7766677899999976541             1111   11223567899999998       78888777889999875


Q ss_pred             c
Q 037555          297 N  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       221 ~  221 (270)
T 1rwi_B          221 G  221 (270)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=9.6e-13  Score=103.12  Aligned_cols=184  Identities=7%  Similarity=0.028  Sum_probs=134.4

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      .+++|+++     ..++.|.+||.++++.+..+..+. ..+.++.+.|+|++++  +.++.|..||. +       .+.+
T Consensus         4 ~~~~lv~~-----~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-------G~~~   68 (276)
T 3no2_A            4 PQHLLVGG-----SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-------GREL   68 (276)
T ss_dssp             CCEEEEEC-----TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-------SCEE
T ss_pred             CCcEEEee-----CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-------CCEE
Confidence            45778887     458999999999999998887665 4788999999999888  45778999997 4       4455


Q ss_pred             EEeecc-CCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecC---CCCCceEEEEEeeccccCCccEEEEe
Q 037555          146 ARQEAH-KRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVGLDRQKNHGFLAVG  220 (298)
Q Consensus       146 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~g  220 (298)
                      -.+..+ ...+.++.+.++++++++.+. ++.|..+|. +++.+..+..-.   .+......+++.+++     .++++.
T Consensus        69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-----~~lv~~  142 (276)
T 3no2_A           69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-----NYLVPL  142 (276)
T ss_dssp             EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-----CEEEEE
T ss_pred             EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-----CEEEEe
Confidence            555544 347888999999999999887 778888886 455554332111   111234556777777     799999


Q ss_pred             ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ..++.|..||.. +             +.+..+..    ...+.++...+++       +++++++.+++|..+|.
T Consensus       143 ~~~~~v~~~d~~-G-------------~~~w~~~~----~~~~~~~~~~~~g-------~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          143 FATSEVREIAPN-G-------------QLLNSVKL----SGTPFSSAFLDNG-------DCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             TTTTEEEEECTT-S-------------CEEEEEEC----SSCCCEEEECTTS-------CEEEECBTTSEEEEECT
T ss_pred             cCCCEEEEECCC-C-------------CEEEEEEC----CCCccceeEcCCC-------CEEEEeCCCCeEEEEeC
Confidence            999999999987 6             45454432    1344567778888       78888887888877764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=1.9e-13  Score=110.20  Aligned_cols=195  Identities=11%  Similarity=0.071  Sum_probs=132.5

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      ..|.++.|++++..++..+     .++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||.... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-   76 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-
T ss_pred             cccceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-
Confidence            4577888888887776663     37778888   34455556666677899999999998888888999999998753 


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                            ........+...+.+++++|+++++++...+    +.|.+||..+......+ ........+..++++|++   
T Consensus        77 ------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g---  146 (333)
T 2dg1_A           77 ------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKG---  146 (333)
T ss_dssp             ------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTS---
T ss_pred             ------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCC---
Confidence                  2222222456779999999999888777666    68999999876653221 111234568999999988   


Q ss_pred             CccEEEEeec------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEee
Q 037555          213 NHGFLAVGME------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASC  285 (298)
Q Consensus       213 ~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~  285 (298)
                        .++++...      .+.|..++...+             .. ..+.   .....+..++|+|++       . ++++.
T Consensus       147 --~l~v~~~~~~~~~~~~~l~~~~~~~~-------------~~-~~~~---~~~~~~~~i~~~~dg-------~~l~v~~  200 (333)
T 2dg1_A          147 --GFYFTDFRGYSTNPLGGVYYVSPDFR-------------TV-TPII---QNISVANGIALSTDE-------KVLWVTE  200 (333)
T ss_dssp             --CEEEEECCCBTTBCCEEEEEECTTSC-------------CE-EEEE---EEESSEEEEEECTTS-------SEEEEEE
T ss_pred             --CEEEEeccccccCCCceEEEEeCCCC-------------EE-EEee---cCCCcccceEECCCC-------CEEEEEe
Confidence              56665543      234544443322             11 1111   123357889999998       5 44555


Q ss_pred             eCCCcEEEeEe
Q 037555          286 GADNTVRVFQV  296 (298)
Q Consensus       286 ~~d~~i~iw~~  296 (298)
                      +.++.|.+|++
T Consensus       201 ~~~~~i~~~d~  211 (333)
T 2dg1_A          201 TTANRLHRIAL  211 (333)
T ss_dssp             GGGTEEEEEEE
T ss_pred             CCCCeEEEEEe
Confidence            66789999987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1.8e-12  Score=114.95  Aligned_cols=235  Identities=9%  Similarity=-0.094  Sum_probs=145.3

Q ss_pred             CCCCCceeeeccCCCccccc-----ccCCCCceEEe---------ccCCCce--EEEEEcCCCCEEEeEeccCC------
Q 037555           22 SVPDAVPAVFTEPPIEDQLA-----WHTLWPESHKL---------YGHGNEL--FSLCCDHQGKLVASSCKAQS------   79 (298)
Q Consensus        22 ~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~---------~~h~~~v--~~~~~s~~~~~l~~~~~~~~------   79 (298)
                      +|...+..+.++ |+++.++     .+..+..+..+         ..+...+  ..++|+|||+.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            455467788888 7777776     33322222221         1122223  68999999999999876321      


Q ss_pred             --CCceEEEEEEcCCce----eeeccccccccEEEEEEcCCCCEEEEEeCCC----eEEEEEeccCCCCccceeeeEEee
Q 037555           80 --TAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR----QFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        80 --~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                        .....|++|++.+++    .+.....+...+..+.|+|||++|+..+.++    .|.+++...       . ....+.
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------~-~~~~l~  268 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------K-DFRLLV  268 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-------S-SCEEEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-------C-ceEEee
Confidence              123459999998775    2333334556789999999999888877665    555554322       1 123334


Q ss_pred             ccCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc--eeeeeecCCC-CCceEEEEEeeccccCCccEEEEeec
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS--VKQILALPPF-NSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      .+...+....+ +++. |+..+.    ++.|.+||+.++..  ...  .+..+ ...+..++|+ .+     .++++...
T Consensus       269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~l~~~~~~-~~-----~lv~~~~~  338 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE--IVPEDSSASLLSVSIV-GG-----HLSLEYLK  338 (695)
T ss_dssp             ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE--EECCCSSCEEEEEEEE-TT-----EEEEEEEE
T ss_pred             cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE--EecCCCCCeEEEEEEE-CC-----EEEEEEEE
Confidence            45555566666 5666 555443    57899999987653  121  22222 4567888887 44     68888889


Q ss_pred             CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-cceEEEEEeecCCCCCCCcceEEE-ee---eCCCcEEEeEec
Q 037555          223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-VAAVNRMAWKTHEKPKNSRTMQLA-SC---GADNTVRVFQVN  297 (298)
Q Consensus       223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~-s~---~~d~~i~iw~~~  297 (298)
                      |+..+||.+....            .....+   ..+ ...|..+.++|++       ..|+ +.   ...++|++||+.
T Consensus       339 dg~~~l~~~~~~g------------~~~~~l---~~~~~~~v~~~~~s~d~-------~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          339 DATSEVRVATLKG------------KPVRTV---QLPGVGAASNLMGLEDL-------DDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             TTEEEEEEEETTC------------CEEEEC---CCSSSSEECCCBSCTTC-------SEEEEEEEETTEEEEEEEEETT
T ss_pred             CCEEEEEEEeCCC------------CeeEEe---cCCCCeEEEEeecCCCC-------CEEEEEEcCCCCCCEEEEEECC
Confidence            9999988776210            222222   223 5678888899987       4444 33   235778888863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=5.3e-12  Score=98.91  Aligned_cols=192  Identities=9%  Similarity=0.027  Sum_probs=135.8

Q ss_pred             ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCCEEEEEeC-C
Q 037555           48 ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSR-D  124 (298)
Q Consensus        48 ~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d  124 (298)
                      .+.++..+. ..+.++.++|+|++|++.       ++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. +
T Consensus        27 ~~w~~~~~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~   98 (276)
T 3no2_A           27 IVWEYPLEKGWECNSVAATKAGEILFSY-------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHP   98 (276)
T ss_dssp             EEEEEECCTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTT
T ss_pred             EEEEeCCCccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCC
Confidence            344555554 468899999999999944       677999999 78888887754 357889999999999999887 7


Q ss_pred             CeEEEEEeccCCCCccceeeeEEee------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQE------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS  198 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  198 (298)
                      +.+..++..        .+.+..+.      .+......+.+.++++++++...++.|..||.+ ++.+..+   .. ..
T Consensus        99 ~~v~~vd~~--------Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~---~~-~~  165 (276)
T 3no2_A           99 STILEVNMK--------GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV---KL-SG  165 (276)
T ss_dssp             EEEEEECTT--------SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE---EC-SS
T ss_pred             CEEEEEeCC--------CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE---EC-CC
Confidence            777766642        22333222      122234566788999999999999999999998 7776633   21 23


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccC--Cc-ccceEEEEEeecCCCCC
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPF--AC-HVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~  275 (298)
                      .+.++...+++     .+++++..++.|..+|..++             +.+..+...  .+ ....+..+...+++   
T Consensus       166 ~~~~~~~~~~g-----~~~v~~~~~~~v~~~d~~tG-------------~~~w~~~~~~~~~~~l~~~~~~~~~~~G---  224 (276)
T 3no2_A          166 TPFSSAFLDNG-----DCLVACGDAHCFVQLNLESN-------------RIVRRVNANDIEGVQLFFVAQLFPLQNG---  224 (276)
T ss_dssp             CCCEEEECTTS-----CEEEECBTTSEEEEECTTTC-------------CEEEEEEGGGSBSCCCSEEEEEEECTTS---
T ss_pred             CccceeEcCCC-----CEEEEeCCCCeEEEEeCcCC-------------cEEEEecCCCCCCccccccccceEcCCC---
Confidence            45667777877     78888888888999998876             444444311  11 12346777888887   


Q ss_pred             CCcceEEEee
Q 037555          276 NSRTMQLASC  285 (298)
Q Consensus       276 ~~~~~~l~s~  285 (298)
                          .++++.
T Consensus       225 ----~i~v~~  230 (276)
T 3no2_A          225 ----GLYICN  230 (276)
T ss_dssp             ----CEEEEE
T ss_pred             ----CEEEEe
Confidence                666665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=9e-12  Score=101.59  Aligned_cols=235  Identities=9%  Similarity=0.029  Sum_probs=142.7

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccCCCccccccc----------------CCC-----CceEEecc------CCC
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH----------------TLW-----PESHKLYG------HGN   57 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~------h~~   57 (298)
                      .+..++..+++.+..+..+..+  .++++ |+++.+...                ..|     ..+..+..      +..
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG--HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE--EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             eEEEEECCCCeEEEEecCCCCC--ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            3456666777777777665444  67777 444443322                122     12333322      123


Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ....++|+|+|++|+++..   ..++.|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|+....
T Consensus       109 ~p~~i~~spdg~~l~v~n~---~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNA---SPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEE---SSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             CcceEEECCCCCEEEEECC---CCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence            4667899999999999864   2368999999999988777 5522 1 2224455544 45566666666666665431


Q ss_pred             CCCc---------------c------c----------------------eeeeEEeec------c----CCceEEEEEcc
Q 037555          136 GTGE---------------I------D----------------------YQLIARQEA------H----KRIIWSCSWNP  162 (298)
Q Consensus       136 ~~~~---------------~------~----------------------~~~~~~~~~------~----~~~v~~~~~~~  162 (298)
                      ....               .      .                      ......+..      +    ......++|+|
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence            1100               0      0                      000000000      0    00111268899


Q ss_pred             CCCEEEEeeC-----------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555          163 FGHEFATGSR-----------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI  231 (298)
Q Consensus       163 ~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~  231 (298)
                      +++.++++..           .+.|.+||+.+.+.+.   .+..+.  +.+++|+|++     .+|++++. +.|.+||.
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~---~i~~~~--p~~ia~spdg-----~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA---RIPGRD--ALSMTIDQQR-----NLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE---EEECTT--CCEEEEETTT-----TEEEEECS-SCEEEEEC
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE---EEecCC--eeEEEECCCC-----CEEEEeCC-CeEEEEEC
Confidence            8887776543           3589999999988777   444344  8999999999     68888776 99999998


Q ss_pred             eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      .++..           +.+..+   ..+......++++|+|
T Consensus       333 ~t~~l-----------~~~~~i---~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          333 SQPEP-----------KLLRTI---EGAAEASLQVQFHPVG  359 (361)
T ss_dssp             SSSSC-----------EEEEEE---TTSCSSEEEEEECCCS
T ss_pred             CCCcc-----------eeeEEe---ccCCCCcEEEEecCCC
Confidence            87511           222232   2356677889999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.48  E-value=1.6e-11  Score=98.74  Aligned_cols=205  Identities=7%  Similarity=-0.007  Sum_probs=136.8

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-----ccEEEEEEcCCCCEEEEEe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-----LTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~  122 (298)
                      .+.++. .......++++++++.+++.     ..++.|.+||..+++....+....     .....+++  ++..++++.
T Consensus        76 ~~~~i~-~~~~p~~i~~~~~g~lyv~~-----~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~  147 (328)
T 3dsm_A           76 EVGRIT-GFTSPRYIHFLSDEKAYVTQ-----IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC  147 (328)
T ss_dssp             EEEEEE-CCSSEEEEEEEETTEEEEEE-----BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE
T ss_pred             EEEEcC-CCCCCcEEEEeCCCeEEEEE-----CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc
Confidence            345553 34678899999988544444     247899999999988776655322     14456777  344454444


Q ss_pred             --CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----------CeEEEEEccCCcceeee
Q 037555          123 --RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----------KTVKIWAVENKSSVKQI  190 (298)
Q Consensus       123 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~  190 (298)
                        .++.|.++|+.+       ......+.. ......+.++|++++++++..+          +.|.++|..+.+....+
T Consensus       148 ~~~~~~v~viD~~t-------~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~  219 (328)
T 3dsm_A          148 WSYQNRILKIDTET-------DKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF  219 (328)
T ss_dssp             CTTCCEEEEEETTT-------TEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEEECCC-------CeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence              489999999987       344444443 2345678899999877777654          78999999888765533


Q ss_pred             eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                       .+. ....+..++++|++     ..|.++..  .|.+||..+++...            ..+  ..........++++|
T Consensus       220 -~~~-~g~~p~~la~~~d~-----~~lyv~~~--~v~~~d~~t~~~~~------------~~~--~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          220 -KFK-LGDWPSEVQLNGTR-----DTLYWINN--DIWRMPVEADRVPV------------RPF--LEFRDTKYYGLTVNP  276 (328)
T ss_dssp             -ECC-TTCCCEEEEECTTS-----CEEEEESS--SEEEEETTCSSCCS------------SCS--BCCCSSCEEEEEECT
T ss_pred             -ecC-CCCCceeEEEecCC-----CEEEEEcc--EEEEEECCCCceee------------eee--ecCCCCceEEEEEcC
Confidence             222 12467899999988     56766654  89999987653210            001  111245678999999


Q ss_pred             CCCCCCCcceEEEee----eCCCcEEEeEec
Q 037555          271 HEKPKNSRTMQLASC----GADNTVRVFQVN  297 (298)
Q Consensus       271 ~~~~~~~~~~~l~s~----~~d~~i~iw~~~  297 (298)
                      ++.      .++++.    ..++.|.+||.+
T Consensus       277 ~~g------~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          277 NNG------EVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             TTC------CEEEEECTTSSSEEEEEEECTT
T ss_pred             CCC------eEEEEcccccccCCEEEEECCC
Confidence            541      677776    678899999853

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=2e-11  Score=104.90  Aligned_cols=185  Identities=14%  Similarity=0.058  Sum_probs=132.1

Q ss_pred             CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ..++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+....     .+.+..+... .....++
T Consensus       174 ~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-----~~~v~~i~~G-~~P~~ia  246 (567)
T 1qks_A          174 RDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-----PTTVAEIKIG-SEARSIE  246 (567)
T ss_dssp             TTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-----CCEEEEEECC-SEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-----CcEeEEEecC-CCCceeE
Confidence            4589999999999998887763 3356789999999999999999999999985111     3445555443 3457899


Q ss_pred             Ec----cCCCEEEEeeC-CCeEEEEEccCCcceeeeeecC----C---C-CCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          160 WN----PFGHEFATGSR-DKTVKIWAVENKSSVKQILALP----P---F-NSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       160 ~~----~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~----~---~-~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      |+    |++++++++.. ++.|.++|..+.+.+..+....    .   | ...+..+..+++++    .+++....+|.|
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~----~~vv~~~~~g~v  322 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP----EFIVNVKETGKI  322 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS----EEEEEETTTTEE
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC----EEEEEecCCCeE
Confidence            99    69998887764 5899999999988776443211    0   1 12577888888764    677777778999


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~  297 (298)
                      .++|+.....           ..+..+.    .......+.|+|++       ++| +++..++.|.++|+.
T Consensus       323 ~~vd~~~~~~-----------~~v~~i~----~~~~~~d~~~~pdg-------r~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          323 LLVDYTDLNN-----------LKTTEIS----AERFLHDGGLDGSH-------RYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             EEEETTCSSE-----------EEEEEEE----CCSSEEEEEECTTS-------CEEEEEEGGGTEEEEEETT
T ss_pred             EEEecCCCcc-----------ceeeeee----ccccccCceECCCC-------CEEEEEeCCCCeEEEEECC
Confidence            9999865421           1111221    23346678899999       555 555567899999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=1e-10  Score=92.40  Aligned_cols=200  Identities=10%  Similarity=0.045  Sum_probs=138.6

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      ..+...+.+++++++|.++++.     ..++.|.+||.. ++.... ...+...+.++++++++.++++...++.|..|+
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~-----~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQ-----HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCcCCCccceEECCCCCEEEEe-----cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence            3455789999999999988776     336889999987 543321 223456789999999999888877788999998


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      ... .     .. ..........+..+++.++++++++...++.|..||. +++... + ........+..+++.+++  
T Consensus        85 ~~g-~-----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~-~~~~~~~~~~~i~~~~~g--  152 (299)
T 2z2n_A           85 KKG-I-----IK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y-ELPNKGSYPSFITLGSDN--  152 (299)
T ss_dssp             TTS-C-----EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS--
T ss_pred             CCC-c-----EE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e-cCCCCCCCCceEEEcCCC--
Confidence            652 1     11 1112223456889999999988887777889999998 443322 1 223344568899999887  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .++++...++.|..||. ++             ... .+. .......+..+++++++       .++++...++.|
T Consensus       153 ---~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~i  206 (299)
T 2z2n_A          153 ---ALWFTENQNNAIGRITE-SG-------------DIT-EFK-IPTPASGPVGITKGNDD-------ALWFVEIIGNKI  206 (299)
T ss_dssp             ---CEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECTTS-------SEEEEETTTTEE
T ss_pred             ---CEEEEeCCCCEEEEEcC-CC-------------cEE-Eee-CCCCCCcceeEEECCCC-------CEEEEccCCceE
Confidence               56666666788999987 43             111 111 12234567889999988       677766667788


Q ss_pred             EEeEe
Q 037555          292 RVFQV  296 (298)
Q Consensus       292 ~iw~~  296 (298)
                      .+|+.
T Consensus       207 ~~~~~  211 (299)
T 2z2n_A          207 GRITT  211 (299)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1.7e-10  Score=91.40  Aligned_cols=193  Identities=8%  Similarity=0.047  Sum_probs=125.8

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----ccccEEEEEEcCCCCEEEEEeCC------
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----HSLTVTQIRFSHDDNLLLSVSRD------  124 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d------  124 (298)
                      ....+.+++++++|+++++.       +..|.+||.++++.......    ....+..++++|+|+++++....      
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~  124 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAV  124 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTB
T ss_pred             CCCceEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccc
Confidence            45679999999999966654       45799999987764322211    23458899999999977755322      


Q ss_pred             ---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEcc--CCcce--eeeeecCCC
Q 037555          125 ---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVE--NKSSV--KQILALPPF  196 (298)
Q Consensus       125 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~--~~~~~--~~~~~~~~~  196 (298)
                         ..-.+|.+....      .. ..+.........++|+|+++.|+.+ +.++.|.+||+.  ++...  ..+..+...
T Consensus       125 ~~~~~~~l~~~d~~g------~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~  197 (297)
T 3g4e_A          125 LERHQGALYSLFPDH------HV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE  197 (297)
T ss_dssp             CCTTCEEEEEECTTS------CE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG
T ss_pred             ccCCCcEEEEEECCC------CE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC
Confidence               334566665421      11 1122233456889999999876554 557899999973  44321  122233334


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPK  275 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  275 (298)
                      ...+..+++.+++     .+.++....+.|..||..++             +.+..+.   .+...+++++|. |+++  
T Consensus       198 ~~~p~g~~~d~~G-----~lwva~~~~~~v~~~d~~tG-------------~~~~~i~---~p~~~~t~~~f~g~d~~--  254 (297)
T 3g4e_A          198 EQIPDGMCIDAEG-----KLWVACYNGGRVIRLDPVTG-------------KRLQTVK---LPVDKTTSCCFGGKNYS--  254 (297)
T ss_dssp             GCEEEEEEEBTTS-----CEEEEEETTTEEEEECTTTC-------------CEEEEEE---CSSSBEEEEEEESGGGC--
T ss_pred             CCCCCeeEECCCC-----CEEEEEcCCCEEEEEcCCCc-------------eEEEEEE---CCCCCceEEEEeCCCCC--
Confidence            4567889999988     67777777788999998766             4444443   245678999998 7762  


Q ss_pred             CCcceEEEeeeCC
Q 037555          276 NSRTMQLASCGAD  288 (298)
Q Consensus       276 ~~~~~~l~s~~~d  288 (298)
                          .++++...+
T Consensus       255 ----~L~vt~~~~  263 (297)
T 3g4e_A          255 ----EMYVTCARD  263 (297)
T ss_dssp             ----EEEEEEBCT
T ss_pred             ----EEEEEcCCc
Confidence                455555443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=2.4e-10  Score=90.33  Aligned_cols=198  Identities=9%  Similarity=-0.018  Sum_probs=137.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +...+.+++++++|.++++.     ..++.|..|+.. ++.. ..+......+..+++.++++++++...++.|..||. 
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~-----~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-  127 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTE-----NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-  127 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             ccCceeeEEECCCCCEEEeC-----CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-
Confidence            45679999999999988876     346789999976 3321 112224457899999999988888777889999987 


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      ...     .. ..........+..+++.++++.+++...++.|..||. +++... + ........+.++++.+++    
T Consensus       128 ~g~-----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~~g----  194 (299)
T 2z2n_A          128 DGK-----IR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGNDD----  194 (299)
T ss_dssp             TCC-----EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS----
T ss_pred             CCC-----EE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECCCC----
Confidence            321     11 1112223456889999999988777777789999998 544332 1 233344568899999987    


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       .+.++...++.|.+|+. ++             .. ..+. ...+...+.++++++++       .++++...++.|..
T Consensus       195 -~l~v~~~~~~~i~~~~~-~g-------------~~-~~~~-~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          195 -ALWFVEIIGNKIGRITT-SG-------------EI-TEFK-IPTPNARPHAITAGAGI-------DLWFTEWGANKIGR  250 (299)
T ss_dssp             -SEEEEETTTTEEEEECT-TC-------------CE-EEEE-CSSTTCCEEEEEECSTT-------CEEEEETTTTEEEE
T ss_pred             -CEEEEccCCceEEEECC-CC-------------cE-EEEE-CCCCCCCceeEEECCCC-------CEEEeccCCceEEE
Confidence             66666656788999987 43             21 1121 22345678899999998       77776656788888


Q ss_pred             eEe
Q 037555          294 FQV  296 (298)
Q Consensus       294 w~~  296 (298)
                      ||.
T Consensus       251 ~d~  253 (299)
T 2z2n_A          251 LTS  253 (299)
T ss_dssp             EET
T ss_pred             ECC
Confidence            874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.42  E-value=5.3e-11  Score=95.77  Aligned_cols=192  Identities=11%  Similarity=0.082  Sum_probs=128.3

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      .....+.+. +++++++.     ..++.|.+||..+++.+.++. .......++++++++++++...++.|.+||..+  
T Consensus        44 ~~~~~i~~~-~~~lyv~~-----~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t--  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVV-----NNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT--  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEE-----GGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT--
T ss_pred             ccceEEEEE-CCEEEEEE-----cCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC--
Confidence            345677774 34444444     247899999999999888775 345678999998885555544899999999886  


Q ss_pred             CCccceeeeEEeeccC-----CceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          137 TGEIDYQLIARQEAHK-----RIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                           ......+....     .....+++ . +..++++.  .++.|.++|..+.+....+   . .......++++|++
T Consensus       115 -----~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i---~-~g~~p~~i~~~~dG  183 (328)
T 3dsm_A          115 -----YEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL---T-IGIQPTSLVMDKYN  183 (328)
T ss_dssp             -----TEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE---E-CSSCBCCCEECTTS
T ss_pred             -----CeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE---E-cCCCccceEEcCCC
Confidence                 34444443222     14456777 3 44555554  4889999999988776633   2 12345688999988


Q ss_pred             ccCCccEEEEeecC----------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          210 RQKNHGFLAVGMES----------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       210 ~~~~~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                           .+++++..+          +.|.++|..+.             +....+. .. .......++|+|++       
T Consensus       184 -----~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-------------~v~~~~~-~~-~g~~p~~la~~~d~-------  236 (328)
T 3dsm_A          184 -----KMWTITDGGYEGSPYGYEAPSLYRIDAETF-------------TVEKQFK-FK-LGDWPSEVQLNGTR-------  236 (328)
T ss_dssp             -----EEEEEBCCBCTTCSSCBCCCEEEEEETTTT-------------EEEEEEE-CC-TTCCCEEEEECTTS-------
T ss_pred             -----CEEEEECCCccCCccccCCceEEEEECCCC-------------eEEEEEe-cC-CCCCceeEEEecCC-------
Confidence                 666666554          78999998765             3333332 11 12367899999988       


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      ..|..+..  .|.+||+.
T Consensus       237 ~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CEEEEESS--SEEEEETT
T ss_pred             CEEEEEcc--EEEEEECC
Confidence            56665544  78888753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.41  E-value=1.3e-10  Score=92.67  Aligned_cols=199  Identities=11%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             CCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeec-ccc----ccccEEEEEEcCCCCEEEEEeCC----
Q 037555           55 HGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQS----HSLTVTQIRFSHDDNLLLSVSRD----  124 (298)
Q Consensus        55 h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d----  124 (298)
                      +...+.+++++++ ++++++..      ...|.+||.+ ++.... ...    ....+.+++++++|+++++...+    
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~  141 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAP  141 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTT
T ss_pred             CCCCCceEEEecCCCcEEEEEC------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccc
Confidence            4567899999999 77666552      3368899988 665433 221    12457899999999888777655    


Q ss_pred             -----------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc----cCCCEEEEe-eCCCeEEEEEcc-CCcc-
Q 037555          125 -----------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN----PFGHEFATG-SRDKTVKIWAVE-NKSS-  186 (298)
Q Consensus       125 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~~wd~~-~~~~-  186 (298)
                                 +.|..++.. ..     .   ..+..+......++|+    |+++.++.+ ..++.|.+||.+ +++. 
T Consensus       142 ~~~~~~~~~~~~~l~~~~~~-g~-----~---~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~  212 (314)
T 1pjx_A          142 ADYTRSMQEKFGSIYCFTTD-GQ-----M---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE  212 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTT-SC-----E---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred             ccccccccCCCCeEEEECCC-CC-----E---EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence                       455555543 11     1   1112233446789999    998766555 567899999986 3321 


Q ss_pred             -eeeeeecCCCC-CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555          187 -VKQILALPPFN-SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN  264 (298)
Q Consensus       187 -~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  264 (298)
                       ...+..+..+. ..+..+++++++     .++++...++.|.+||..++             +....+.   .+...+.
T Consensus       213 ~~~~~~~~~~~~~~~p~~i~~d~~G-----~l~v~~~~~~~i~~~d~~~g-------------~~~~~~~---~~~~~~~  271 (314)
T 1pjx_A          213 NKKVWGHIPGTHEGGADGMDFDEDN-----NLLVANWGSSHIEVFGPDGG-------------QPKMRIR---CPFEKPS  271 (314)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEBTTC-----CEEEEEETTTEEEEECTTCB-------------SCSEEEE---CSSSCEE
T ss_pred             cceEEEECCCCCCCCCCceEECCCC-----CEEEEEcCCCEEEEEcCCCC-------------cEeEEEe---CCCCCce
Confidence             11222333333 567889999988     67777767889999998754             2222222   2446789


Q ss_pred             EEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555          265 RMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN  297 (298)
Q Consensus       265 ~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~  297 (298)
                      +++|+|++       . ++++...++.|..|++.
T Consensus       272 ~i~~~~dg-------~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          272 NLHFKPQT-------KTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTS-------SEEEEEETTTTEEEEEECS
T ss_pred             eEEECCCC-------CEEEEEeCCCCeEEEEeCC
Confidence            99999998       6 55566667889888864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.40  E-value=2.2e-10  Score=91.37  Aligned_cols=208  Identities=10%  Similarity=0.072  Sum_probs=132.4

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEe-------EeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCC-CCE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVAS-------SCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHD-DNL  117 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~-------~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~  117 (298)
                      ..+...-....+++|++++.++++       ..     .++.|.+|+..+++......    ++...+.+++++++ +++
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l   85 (314)
T 1pjx_A           11 TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             EEEECCCTTCEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred             hhhhccCCCccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcE
Confidence            334444556789999999988877       32     37889999987776532211    24567899999999 665


Q ss_pred             EEEEeCCCeEEEEEeccCCCCccceeee-EEe--eccCCceEEEEEccCCCEEEEeeCC---------------CeEEEE
Q 037555          118 LLSVSRDRQFSVFAIQRTGTGEIDYQLI-ARQ--EAHKRIIWSCSWNPFGHEFATGSRD---------------KTVKIW  179 (298)
Q Consensus       118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~w  179 (298)
                      +++.. .+.|.+||.. ..     .... ...  ......+..++++++++++++...+               +.|..+
T Consensus        86 ~v~~~-~~~l~~~d~~-g~-----~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A           86 FVADM-RLGLLVVQTD-GT-----FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             EEEET-TTEEEEEETT-SC-----EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             EEEEC-CCCEEEEeCC-CC-----EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence            55444 4478888876 32     1111 110  0112357899999999887776554               567777


Q ss_pred             EccCCcceeeeeecCCCCCceEEEEEe----eccccCCccEEE-EeecCCcEEEEEeee-cccccccCCCCCCcceeeee
Q 037555          180 AVENKSSVKQILALPPFNSSVTALSWV----GLDRQKNHGFLA-VGMESGVIELWSISV-NRTNDVSTPAPSTANIIIRF  253 (298)
Q Consensus       180 d~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~l~-~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  253 (298)
                      |.. ++...    +.........++++    |++     ..++ +...++.|.+|+... +..           .....+
T Consensus       159 ~~~-g~~~~----~~~~~~~~~~i~~~~~~d~dg-----~~l~v~~~~~~~i~~~~~~~~g~~-----------~~~~~~  217 (314)
T 1pjx_A          159 TTD-GQMIQ----VDTAFQFPNGIAVRHMNDGRP-----YQLIVAETPTKKLWSYDIKGPAKI-----------ENKKVW  217 (314)
T ss_dssp             CTT-SCEEE----EEEEESSEEEEEEEECTTSCE-----EEEEEEETTTTEEEEEEEEETTEE-----------EEEEEE
T ss_pred             CCC-CCEEE----eccCCCCcceEEEecccCCCC-----CEEEEEECCCCeEEEEECCCCCcc-----------ccceEE
Confidence            765 33222    11123446789999    887     4554 445678999999863 210           111122


Q ss_pred             ccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          254 DPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       254 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..+..+. ..+..+++++++       .++++...++.|.+||.+
T Consensus       218 ~~~~~~~~~~p~~i~~d~~G-------~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          218 GHIPGTHEGGADGMDFDEDN-------NLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EECCCCSSCEEEEEEEBTTC-------CEEEEEETTTEEEEECTT
T ss_pred             EECCCCCCCCCCceEECCCC-------CEEEEEcCCCEEEEEcCC
Confidence            2233343 567889999998       788887778889999753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=4.5e-11  Score=105.83  Aligned_cols=207  Identities=10%  Similarity=0.018  Sum_probs=128.4

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--------
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--------  125 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  125 (298)
                      +|...+..++|||||++||.+....+.+...|++||+.+++.+.. ..+......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            456678899999999999976543334457999999999886543 1111113578999 999998888774        


Q ss_pred             -----eEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCc-ceeeeeecC
Q 037555          126 -----QFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKS-SVKQILALP  194 (298)
Q Consensus       126 -----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~-~~~~~~~~~  194 (298)
                           .|++|++.+....   ...+..... +...+..+.|+|++++|+....    +..|+++|+.++. ...   .+.
T Consensus       204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~---~l~  277 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL---TVQ  277 (693)
T ss_dssp             -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE---EEE
T ss_pred             cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE---EEe
Confidence                 3888988764311   123333333 4555788999999998865442    3589999998764 233   222


Q ss_pred             CCCCceEEEEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          195 PFNSSVTALSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                      .+....... +++++.    .+++....+   +.|..+++.+...           .....+.   .|...+.  .|+++
T Consensus       278 ~~~~~~~~~-~~~~g~----~l~~~t~~~~~~~~l~~~d~~~~~~-----------~~~~~l~---~~~~~~~--~~s~~  336 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGS----TLYLLTNRDAPNRRLVTVDAANPGP-----------AHWRDLI---PERQQVL--TVHSG  336 (693)
T ss_dssp             CSSSSCEEE-EEEETT----EEEEEECTTCTTCEEEEEETTSCCG-----------GGCEEEE---CCCSSCE--EEEEE
T ss_pred             CCCCceEEE-EeccCC----EEEEEECCCCCCCEEEEEeCCCCCc-----------cccEEEe---cCCCCEE--EEEEE
Confidence            344444444 566552    455555443   5788888775421           1112222   2333443  78888


Q ss_pred             CCCCCCcceEEEeee-CCC--cEEEeEe
Q 037555          272 EKPKNSRTMQLASCG-ADN--TVRVFQV  296 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~-~d~--~i~iw~~  296 (298)
                      +       ..|+... .++  .|++|++
T Consensus       337 g-------~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          337 S-------GYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             T-------TEEEEEEEETTEEEEEEECT
T ss_pred             C-------CEEEEEEEECCeeEEEEEEC
Confidence            8       5555444 454  5667764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=1.8e-10  Score=95.42  Aligned_cols=213  Identities=10%  Similarity=0.011  Sum_probs=132.1

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEecc
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQR  134 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~  134 (298)
                      .....++|+++++++++.     ..++.|++||..+++.......... .. ++|+++++.|+++..++  .|.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d-----~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQ-----RDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEE-----TTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEe-----cCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            468899999999977766     3478999999987766544443222 33 99999999998888766  788888764


Q ss_pred             CCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee--cCCCCCce-E-EEEEeecc
Q 037555          135 TGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA--LPPFNSSV-T-ALSWVGLD  209 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~  209 (298)
                      ...    ......+.. ....+.+++++|++..|+++..++.|+.||..+..... +..  ..+..... . .++|+|++
T Consensus       204 ~~~----~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          204 GWA----PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             TTC----EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTT
T ss_pred             Cce----eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCC
Confidence            321    111111112 34567889999965566667778899999998765322 111  11111222 3 89999954


Q ss_pred             ccCCccEEEEeecCCcEEEEEeeecccccccCC-CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-C
Q 037555          210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-A  287 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~  287 (298)
                      .    .++++-...+.|+.|+.........-.. ......-   .. ....-.....|++++++       .++++-. .
T Consensus       279 g----~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg---~~-~~~~~~~P~gia~d~dG-------~lyvad~~~  343 (409)
T 3hrp_A          279 S----NFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDG---LR-EEALFAQPNGMTVDEDG-------NFYIVDGFK  343 (409)
T ss_dssp             T----EEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCE---EG-GGCBCSSEEEEEECTTC-------CEEEEETTT
T ss_pred             C----EEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCC---cc-cccEeCCCeEEEEeCCC-------CEEEEeCCC
Confidence            1    5666666778899998653210000000 0000000   00 00112347899999999       7778877 7


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                      ++.|+.|++
T Consensus       344 ~~~I~~~~~  352 (409)
T 3hrp_A          344 GYCLRKLDI  352 (409)
T ss_dssp             TCEEEEEET
T ss_pred             CCEEEEEEC
Confidence            889999983

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=3.1e-11  Score=98.15  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      .+.. |+.++|  ++..|+++ .     ++.|++||+.+.........|...+.++.+.+..  +++++.||.|.+||+.
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~-----~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-T-----RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR  154 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-E-----SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred             eCCC-eeEEEE--CCCEEEEE-c-----CCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence            4666 999999  89999998 3     6899999998766555566677788888887653  8889999999999998


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc--eeeeee---cC---CCCCceEEEEE
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS--VKQILA---LP---PFNSSVTALSW  205 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~---~~---~~~~~v~~~~~  205 (298)
                      ...       ...    +...|.+++|+|+|  ++.|..||++++|+......  ...+..   +.   ++...|.++.|
T Consensus       155 ~~~-------~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w  221 (388)
T 1xip_A          155 TKS-------TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI  221 (388)
T ss_dssp             TCC-------EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred             CCc-------ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence            632       221    34579999999999  78899999999998887663  332200   01   36788999999


Q ss_pred             eeccccCCccEEEE
Q 037555          206 VGLDRQKNHGFLAV  219 (298)
Q Consensus       206 ~~~~~~~~~~~l~~  219 (298)
                      .+++     .++++
T Consensus       222 l~~~-----~flv~  230 (388)
T 1xip_A          222 LSPQ-----DFLAV  230 (388)
T ss_dssp             SSSS-----EEEEE
T ss_pred             ecCC-----eEEEE
Confidence            9987     56665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=6.6e-10  Score=99.23  Aligned_cols=203  Identities=10%  Similarity=0.103  Sum_probs=128.0

Q ss_pred             EEEEEcCCCCEEEeEeccCCC---------CceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCC-
Q 037555           60 FSLCCDHQGKLVASSCKAQST---------AAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-  125 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~---------~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  125 (298)
                      ..++|+|| +.|+.++.+...         ....|++|++.++..    +.....+...+..+.|+|||++|+..+.++ 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            57889999 988888653211         134699999977652    222223334588999999999888777544 


Q ss_pred             ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCc-ceeeeeecCCC
Q 037555          126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKS-SVKQILALPPF  196 (298)
Q Consensus       126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~-~~~~~~~~~~~  196 (298)
                          .|++||+..+.     ......+..+...+.... .|+++.|+..+.+    +.|.+||+.+.. ....  .+..+
T Consensus       291 ~~~~~l~~~d~~~~~-----~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--l~~~~  362 (741)
T 1yr2_A          291 DPVNTVHVARVTNGK-----IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPES  362 (741)
T ss_dssp             CSCCEEEEEEEETTE-----ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE--EECCC
T ss_pred             CCcceEEEEECCCCC-----CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE--EecCC
Confidence                89999987631     110233444444444443 4888888887753    459999998752 2232  22334


Q ss_pred             CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  276 (298)
                      ...+..+++. .+     .++++...|+..+||.+....            .....+. + .+...|..+.++|+++   
T Consensus       363 ~~~l~~~~~~-~~-----~lv~~~~~dg~~~l~~~~~~g------------~~~~~l~-~-~~~~~v~~~~~s~d~~---  419 (741)
T 1yr2_A          363 KDNLESVGIA-GN-----RLFASYIHDAKSQVLAFDLDG------------KPAGAVS-L-PGIGSASGLSGRPGDR---  419 (741)
T ss_dssp             SSEEEEEEEE-BT-----EEEEEEEETTEEEEEEEETTS------------CEEEECB-C-SSSCEEEEEECCBTCS---
T ss_pred             CCeEEEEEEE-CC-----EEEEEEEECCEEEEEEEeCCC------------Cceeecc-C-CCCeEEEEeecCCCCC---
Confidence            4556677776 33     678888889988888765210            2223322 1 1356788999999872   


Q ss_pred             CcceEEEeee---CCCcEEEeEec
Q 037555          277 SRTMQLASCG---ADNTVRVFQVN  297 (298)
Q Consensus       277 ~~~~~l~s~~---~d~~i~iw~~~  297 (298)
                         .++++.+   ..++|++||+.
T Consensus       420 ---~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          420 ---HAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             ---CEEEEEEETTEEEEEEEEETT
T ss_pred             ---EEEEEEcCCCCCCEEEEEECC
Confidence               3333332   35788888863

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.35  E-value=2.7e-09  Score=91.67  Aligned_cols=208  Identities=9%  Similarity=0.066  Sum_probs=137.3

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEc----CCCCEEEEEe
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFS----HDDNLLLSVS  122 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~  122 (298)
                      +.++. ....+..+.|+|+|+++++++     .++.|.+||+.  +++.+..+.... ....++|+    |||++++++.
T Consensus       190 ~~~i~-~g~~p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          190 KTVLD-TGYAVHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEE
T ss_pred             EEEEe-CCCCccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEE
Confidence            44443 234577999999999999985     48899999995  777777776433 45789999    6999887766


Q ss_pred             C-CCeEEEEEeccCCCCccceeeeEEeec----------cCC-ceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceee
Q 037555          123 R-DRQFSVFAIQRTGTGEIDYQLIARQEA----------HKR-IIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQ  189 (298)
Q Consensus       123 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~  189 (298)
                      . ++.+.++|..+       .+.+..+..          |.. .+..+..++++..+ +....+|.|.++|....+.+. 
T Consensus       263 ~~~~~v~ViD~~t-------~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-  334 (567)
T 1qks_A          263 YWPPQYVIMDGET-------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-  334 (567)
T ss_dssp             EETTEEEEEETTT-------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-
T ss_pred             ccCCeEEEEECCC-------CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-
Confidence            5 69999999776       334443321          222 57788888876544 445567999999998754332 


Q ss_pred             eeecCCCCCceEEEEEeeccccCCccEEEE-eecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CCcccceEEEE
Q 037555          190 ILALPPFNSSVTALSWVGLDRQKNHGFLAV-GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FACHVAAVNRM  266 (298)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~  266 (298)
                      +..+. .......+.|+|++     .++++ ...++.|.++|+.++             +....+..  ...|.+.-..+
T Consensus       335 v~~i~-~~~~~~d~~~~pdg-----r~~~va~~~sn~V~ViD~~t~-------------kl~~~i~vgg~~Phpg~g~~~  395 (567)
T 1qks_A          335 TTEIS-AERFLHDGGLDGSH-----RYFITAANARNKLVVIDTKEG-------------KLVAIEDTGGQTPHPGRGANF  395 (567)
T ss_dssp             EEEEE-CCSSEEEEEECTTS-----CEEEEEEGGGTEEEEEETTTT-------------EEEEEEECSSSSBCCTTCEEE
T ss_pred             eeeee-ccccccCceECCCC-----CEEEEEeCCCCeEEEEECCCC-------------cEEEEEeccCcCCCCccceee
Confidence            11222 34456788999998     45554 446789999999876             33333321  12343222122


Q ss_pred             EeecCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555          267 AWKTHEKPKNSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       267 ~~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                       ++|++.      ..++++. .++.|.++|..
T Consensus       396 -~~p~~g------~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          396 -VHPTFG------PVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             -EETTTE------EEEEEEBSSSSEEEEEECC
T ss_pred             -ECCCCC------cEEEeCCCCCCeEEEecCC
Confidence             578741      4555553 46889998863

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=2.6e-09  Score=84.58  Aligned_cols=204  Identities=10%  Similarity=0.084  Sum_probs=126.6

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      +..-.-+..|++++..|+...    ..++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..+
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d----~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVD----IPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEE----TTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             CCccccCCeEECCCCEEEEEE----CCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            334566889999655544443    3478999999987654 2333 4567899999999995554 3 56888999875


Q ss_pred             CCCCccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCC---------CeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          135 TGTGEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRD---------KTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      ..     ...+.....  ....+..++++|+++++++....         ..-.+|.+........   +.........+
T Consensus        83 g~-----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pngi  154 (297)
T 3g4e_A           83 QS-----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISNGL  154 (297)
T ss_dssp             TE-----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEEEE
T ss_pred             Cc-----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeeccccccce
Confidence            32     122221111  12357889999999976654321         2334555543222221   11123446789


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEee--ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSIS--VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      +|+|++.    .++++.+.++.|.+|++.  ++..           .....+..+..+...+..+++.+++       ++
T Consensus       155 ~~spdg~----~lyv~~~~~~~i~~~~~d~~~G~~-----------~~~~~~~~~~~~~~~p~g~~~d~~G-------~l  212 (297)
T 3g4e_A          155 DWSLDHK----IFYYIDSLSYSVDAFDYDLQTGQI-----------SNRRSVYKLEKEEQIPDGMCIDAEG-------KL  212 (297)
T ss_dssp             EECTTSC----EEEEEEGGGTEEEEEEECTTTCCE-----------EEEEEEEECCGGGCEEEEEEEBTTS-------CE
T ss_pred             EEcCCCC----EEEEecCCCCcEEEEeccCCCCcc-----------cCcEEEEECCCCCCCCCeeEECCCC-------CE
Confidence            9999983    344556667899999984  2210           1111222233345677899999998       77


Q ss_pred             EEeeeCCCcEEEeEe
Q 037555          282 LASCGADNTVRVFQV  296 (298)
Q Consensus       282 l~s~~~d~~i~iw~~  296 (298)
                      .++...++.|..||.
T Consensus       213 wva~~~~~~v~~~d~  227 (297)
T 3g4e_A          213 WVACYNGGRVIRLDP  227 (297)
T ss_dssp             EEEEETTTEEEEECT
T ss_pred             EEEEcCCCEEEEEcC
Confidence            777777788988875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=2.5e-09  Score=84.44  Aligned_cols=199  Identities=8%  Similarity=0.022  Sum_probs=136.5

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      .....+.++++.++|.+.++.     ..++.|.+|+.. ++... .+......+..+++.++++++++...++.|..+|.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~-----~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQ-----HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCCCcceeeECCCCCEEEEc-----CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            345678999999999988776     347889999987 54432 12233467899999999998887777889999987


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      . ..     . ...........+..+++.++++++++...++.|..+|.. ++... + .+......+..+++.+++   
T Consensus        91 ~-g~-----~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~-~~~~~~~~~~~i~~d~~g---  157 (300)
T 2qc5_A           91 K-GG-----F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-Y-DLPNKGSYPAFITLGSDN---  157 (300)
T ss_dssp             T-SC-----E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTS---
T ss_pred             C-CC-----e-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-c-cCCCCCCCceeEEECCCC---
Confidence            6 21     1 111222234568899999999888777778899999987 44322 1 233344568899999987   


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                        .+.++...++.|..++. ++             ... .+. ...+...+..+++.+++       .++++....+.|.
T Consensus       158 --~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~d~~g-------~l~v~~~~~~~i~  212 (300)
T 2qc5_A          158 --ALWFTENQNNSIGRITN-TG-------------KLE-EYP-LPTNAAAPVGITSGNDG-------ALWFVEIMGNKIG  212 (300)
T ss_dssp             --SEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECTTS-------SEEEEETTTTEEE
T ss_pred             --CEEEEecCCCeEEEECC-CC-------------cEE-Eee-CCCCCCCcceEEECCCC-------CEEEEccCCCEEE
Confidence              66666656788999887 33             111 111 22334567889999988       6777666667787


Q ss_pred             EeEe
Q 037555          293 VFQV  296 (298)
Q Consensus       293 iw~~  296 (298)
                      +|+.
T Consensus       213 ~~~~  216 (300)
T 2qc5_A          213 RITT  216 (300)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            7764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=3.1e-09  Score=83.90  Aligned_cols=198  Identities=8%  Similarity=-0.022  Sum_probs=134.5

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +...+.++++.+++.++++.     ..++.|.++|.. ++... .+......+.++++.++++++++...++.|..++..
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~-----~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTE-----NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCcceeEEECCCCCEEEEe-----cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            34678999999999887776     346789999987 54432 222234678999999999988887778889988875


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                       ..     .. ...+......+..+++.++++.+++...++.|..+|. +++... + ........+..+++.+++    
T Consensus       134 -g~-----~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~d~~g----  199 (300)
T 2qc5_A          134 -GT-----IY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-Y-PLPTNAAAPVGITSGNDG----  199 (300)
T ss_dssp             -SC-----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS----
T ss_pred             -CC-----EE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-e-eCCCCCCCcceEEECCCC----
Confidence             21     11 1122223456889999999997766666788999998 444322 2 233344568899999887    


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       .+.++....+.|.+|+. ++             ... .+. ...+...+.++++++++       .++++...++.|..
T Consensus       200 -~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~d~~g-------~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          200 -ALWFVEIMGNKIGRITT-TG-------------EIS-EYD-IPTPNARPHAITAGKNS-------EIWFTEWGANQIGR  255 (300)
T ss_dssp             -SEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECSTT-------CEEEEETTTTEEEE
T ss_pred             -CEEEEccCCCEEEEEcC-CC-------------cEE-EEE-CCCCCCCceEEEECCCC-------CEEEeccCCCeEEE
Confidence             56666656678999987 22             111 111 12345668899999998       66666666778887


Q ss_pred             eEe
Q 037555          294 FQV  296 (298)
Q Consensus       294 w~~  296 (298)
                      |+.
T Consensus       256 ~~~  258 (300)
T 2qc5_A          256 ITN  258 (300)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.31  E-value=3.4e-09  Score=86.57  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=58.9

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDDN  116 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~  116 (298)
                      +.++.....+  .++++|+|++|+++...     ++..++.|.+||..+++.+..+...       ......++|+|||+
T Consensus        60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~  137 (373)
T 2mad_H           60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence            4444433333  99999999999988521     0012578999999988777665421       12345899999999


Q ss_pred             EEEEEeC--CCeEEEEEecc
Q 037555          117 LLLSVSR--DRQFSVFAIQR  134 (298)
Q Consensus       117 ~l~~~~~--dg~i~iwd~~~  134 (298)
                      +|+++..  ++.|.++| .+
T Consensus       138 ~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CC
Confidence            9998874  57899999 76

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=2.3e-09  Score=85.29  Aligned_cols=193  Identities=8%  Similarity=0.016  Sum_probs=119.2

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc---c-ccccEEEEEEcCCCCEEEE----
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ---S-HSLTVTQIRFSHDDNLLLS----  120 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~----  120 (298)
                      ...+..+...+..++++++|+++++.     ..++.|.+|+.+ ++......   + ....+.+++++++|+++++    
T Consensus        78 ~~~~~~~~~~~~gl~~d~dG~l~v~~-----~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~  151 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDAQQRLVHCE-----HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPF  151 (305)
T ss_dssp             EEEEEESCSCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSG
T ss_pred             EEEEeCCCCccceeeECCCCCEEEEE-----CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCC
Confidence            44555566778999999999977665     335789999986 54322111   1 1134678999999998886    


Q ss_pred             EeC-------------CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEc
Q 037555          121 VSR-------------DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAV  181 (298)
Q Consensus       121 ~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~  181 (298)
                      +..             .+.|..+|.....     ...+   . .......++|+|+++.|+.+...      +.|.+|++
T Consensus       152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          152 GLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             GGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             CccccccccccccccCCCeEEEEcCCCCc-----EEEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            332             2456666654321     1111   1 23456789999999988877665      78999998


Q ss_pred             cCCcceeeeeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555          182 ENKSSVKQILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV  260 (298)
Q Consensus       182 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (298)
                      .... +.....+ ......+..+++.+++     . |.++..++ |.+|+.. +             +.+..+..   +.
T Consensus       223 ~~~~-l~~~~~~~~~~~~~pdgi~~d~~G-----~-lwv~~~~g-v~~~~~~-g-------------~~~~~~~~---~~  277 (305)
T 3dr2_A          223 RDGA-LHDRRHFASVPDGLPDGFCVDRGG-----W-LWSSSGTG-VCVFDSD-G-------------QLLGHIPT---PG  277 (305)
T ss_dssp             ETTE-EEEEEEEECCSSSCCCSEEECTTS-----C-EEECCSSE-EEEECTT-S-------------CEEEEEEC---SS
T ss_pred             cCCC-ccCCeEEEECCCCCCCeEEECCCC-----C-EEEecCCc-EEEECCC-C-------------CEEEEEEC---CC
Confidence            7644 2111111 1123445678888887     5 44555444 8888874 2             33333331   22


Q ss_pred             ceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          261 AAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                       .+.+++|.+++       ..|..++.++
T Consensus       278 -~~~~~~f~~d~-------~~L~it~~~~  298 (305)
T 3dr2_A          278 -TASNCTFDQAQ-------QRLFITGGPC  298 (305)
T ss_dssp             -CCCEEEECTTS-------CEEEEEETTE
T ss_pred             -ceeEEEEeCCC-------CEEEEEcCCe
Confidence             47889999887       5666666554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=1.6e-09  Score=87.64  Aligned_cols=209  Identities=8%  Similarity=0.021  Sum_probs=126.3

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-------ccccccEEEEEEcCCCCEEEEEeC-----C
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QSHSLTVTQIRFSHDDNLLLSVSR-----D  124 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d  124 (298)
                      ..+..++++++|+++++...   ..++.++||.+.+++.. .+       ..+-..+..++++++++++++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~---~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQ---FYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECG---GGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCC---CCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            67999999999999988643   11232555555445433 22       234567999999999876665443     5


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeec------cCCceEEEEEccCCCEE-EEee---CCCeEEEEEccCCcceeeeeecC
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEA------HKRIIWSCSWNPFGHEF-ATGS---RDKTVKIWAVENKSSVKQILALP  194 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~wd~~~~~~~~~~~~~~  194 (298)
                      +.|.+||+.+       .+.+..+..      +...+..+++++++..+ ++-.   .++.|.+||+.+++....   +.
T Consensus        93 ~~i~~~d~~t-------g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~---~~  162 (343)
T 2qe8_A           93 PKLVAWDTLN-------NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV---LQ  162 (343)
T ss_dssp             CEEEEEETTT-------TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE---CT
T ss_pred             CeEEEEECCC-------CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE---ec
Confidence            7899999876       333333322      22356889999865555 4444   578899999987654431   11


Q ss_pred             CC-----------------------------CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          195 PF-----------------------------NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       195 ~~-----------------------------~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                      .|                             ...+..++|+|++     ..|+.+..++. ++|.+........   ...
T Consensus       163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-----~~ly~~~~~~~-~l~~~~~~~~~~~---~~~  233 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-----EWLYLSPMHST-SMYRIKSADLSNL---QLT  233 (343)
T ss_dssp             TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-----CEEEEEESSCS-EEEEEEHHHHTCT---TCC
T ss_pred             CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-----CEEEEEeCCCC-eEEEEEHHHhcCC---CCC
Confidence            10                             1235789999988     67777766553 4444432110000   000


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .......+. ..++......+++++++       .++++...++.|.+||.
T Consensus       234 ~~~~~~~~~-~~g~~g~pdgia~d~~G-------~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          234 DAELGSKIE-RYSEKPICDGISIDKDH-------NIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHHHHTTCE-EEEECCSCSCEEECTTC-------CEEEEEGGGTEEEEEET
T ss_pred             hhhhhcceE-ecccCCCCceEEECCCC-------CEEEEccCCCeEEEEEC
Confidence            000000000 01223345678999988       88888888899999985

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1.3e-08  Score=81.60  Aligned_cols=181  Identities=9%  Similarity=0.030  Sum_probs=114.9

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCCCCEEEEEeCC----Ce
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSVSRD----RQ  126 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d----g~  126 (298)
                      ....+.++.|+++|+++++.       ...|.+||..+++......    .....+.+++++|+|+++++...+    +.
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~  160 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA  160 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred             CCCcceEEEEeCCCeEEEEE-------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCc
Confidence            34679999999999888765       2349999988776432211    112468899999999977665422    23


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEcc--CC-cce--eeeeecCCCCCce
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVE--NK-SSV--KQILALPPFNSSV  200 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~--~~-~~~--~~~~~~~~~~~~v  200 (298)
                      ..||.+..       .... .+.........++|+|+++.++.+ +.++.|.+||+.  ++ ...  ..+..+......+
T Consensus       161 ~~l~~~~~-------g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p  232 (326)
T 2ghs_A          161 GSIYHVAK-------GKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM  232 (326)
T ss_dssp             EEEEEEET-------TEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred             eEEEEEeC-------CcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC
Confidence            34444442       1111 122233456789999999877555 457899999986  44 211  1122333334556


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCC
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THE  272 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  272 (298)
                      ..+++.+++     .+.++...++.|.+|+.. +             +....+.   .+...+.+++|. +++
T Consensus       233 ~gi~~d~~G-----~lwva~~~~~~v~~~d~~-g-------------~~~~~i~---~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          233 DGSVCDAEG-----HIWNARWGEGAVDRYDTD-G-------------NHIARYE---VPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             EEEEECTTS-----CEEEEEETTTEEEEECTT-C-------------CEEEEEE---CSCSBEEEEEEESTTS
T ss_pred             CeeEECCCC-----CEEEEEeCCCEEEEECCC-C-------------CEEEEEE---CCCCCcEEEEEecCCC
Confidence            788898887     566666567889999873 3             3333332   244579999998 876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=2.6e-09  Score=84.96  Aligned_cols=205  Identities=12%  Similarity=0.005  Sum_probs=127.2

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      .+..+...........|+|+++.|+...    ..++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d----~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSD----LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAI  109 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEE----TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEE----CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEE
Confidence            3555666666788999999998444443    457889999984 44 34455566778999999999977666666889


Q ss_pred             EEEEeccCCCCccceeeeE-Eeec-cCCceEEEEEccCCCEEEE----eeC-------------CCeEEEEEccCCccee
Q 037555          128 SVFAIQRTGTGEIDYQLIA-RQEA-HKRIIWSCSWNPFGHEFAT----GSR-------------DKTVKIWAVENKSSVK  188 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~  188 (298)
                      .+|+.. +.     ...+. .... ....+..++++|+++++++    |..             .+.|..+|..+++...
T Consensus       110 ~~~~~~-g~-----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          110 TRSDAD-GQ-----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             EEECTT-SC-----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             EEECCC-CC-----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            999865 21     11111 1111 1234678999999998886    332             2467777776655433


Q ss_pred             eeeecCCCCCceEEEEEeeccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555          189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA  262 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (298)
                      .  .   .......++|+|++     ..|+.+...      +.|++|++.... .          .....+...  ....
T Consensus       184 ~--~---~~~~p~gl~~spdg-----~~lyv~~~~~~~~~~~~i~~~~~~~~~-l----------~~~~~~~~~--~~~~  240 (305)
T 3dr2_A          184 M--A---DLDHPNGLAFSPDE-----QTLYVSQTPEQGHGSVEITAFAWRDGA-L----------HDRRHFASV--PDGL  240 (305)
T ss_dssp             E--E---EESSEEEEEECTTS-----SEEEEEECCC---CCCEEEEEEEETTE-E----------EEEEEEECC--SSSC
T ss_pred             E--e---cCCCCcceEEcCCC-----CEEEEEecCCcCCCCCEEEEEEecCCC-c----------cCCeEEEEC--CCCC
Confidence            1  1   22456789999998     566666554      689999987531 0          111111111  1233


Q ss_pred             EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ...+++.+++       ++.++. .++ |.+|+.
T Consensus       241 pdgi~~d~~G-------~lwv~~-~~g-v~~~~~  265 (305)
T 3dr2_A          241 PDGFCVDRGG-------WLWSSS-GTG-VCVFDS  265 (305)
T ss_dssp             CCSEEECTTS-------CEEECC-SSE-EEEECT
T ss_pred             CCeEEECCCC-------CEEEec-CCc-EEEECC
Confidence            4567888887       644444 343 777753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=3.8e-09  Score=87.49  Aligned_cols=212  Identities=10%  Similarity=0.070  Sum_probs=127.1

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc----ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL----QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      ++|+++++.|+++..   .....|.+++...+.....+    ......+.+++++|++..|+.+..++.|..||..... 
T Consensus       176 ia~~~~g~~l~~~d~---~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGW---EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-  251 (409)
T ss_dssp             CEECTTSSEEEEEBS---STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-
T ss_pred             eeEecCCCcEEEEec---CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-
Confidence            899999998888853   11228999998755433333    2144567889999954455557778999999987532 


Q ss_pred             CccceeeeEE--eeccCCc--eEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecC---C---------CCCce
Q 037555          138 GEIDYQLIAR--QEAHKRI--IWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALP---P---------FNSSV  200 (298)
Q Consensus       138 ~~~~~~~~~~--~~~~~~~--v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~---------~~~~v  200 (298)
                          ......  .......  ...++|+|+ +.++++-..++.|+.|+....  ...+....   +         .-...
T Consensus       252 ----~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P  325 (409)
T 3hrp_A          252 ----VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQP  325 (409)
T ss_dssp             ----EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred             ----EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCC
Confidence                111111  1111111  138999995 555555566789999987643  22111110   0         01347


Q ss_pred             EEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          201 TALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      ..++++|++     .++++-. .++.|+.|++.++.......... ......- ......-.....|++++++       
T Consensus       326 ~gia~d~dG-----~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~-~~g~~~g-~~~~~~~~~P~giavd~~g-------  391 (409)
T 3hrp_A          326 NGMTVDEDG-----NFYIVDGFKGYCLRKLDILDGYVSTVAGQVD-VASQIDG-TPLEATFNYPYDICYDGEG-------  391 (409)
T ss_dssp             EEEEECTTC-----CEEEEETTTTCEEEEEETTTTEEEEEEECTT-CBSCCCB-STTTCCBSSEEEEEECSSS-------
T ss_pred             eEEEEeCCC-----CEEEEeCCCCCEEEEEECCCCEEEEEeCCCC-CCCcCCC-ChhceEeCCceEEEEcCCC-------
Confidence            899999988     6777776 78899999965442110000000 0000000 0000113457899999998       


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      .++++-..++.|+.++++
T Consensus       392 ~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          392 GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEEESTTCEEEEEEEC
T ss_pred             CEEEEECCCCeEEEEEeC
Confidence            888888889999988763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.21  E-value=4.1e-09  Score=81.04  Aligned_cols=199  Identities=9%  Similarity=-0.000  Sum_probs=131.0

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      ...+.|++++.++++.+.   ..++.|.++|+.+++.+..+.... .....+++.. +.+.++.-.++.+.++|..+   
T Consensus        23 ~~Gl~~~~dg~Lyvstg~---~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t---   95 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGL---YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT---   95 (266)
T ss_dssp             EEEEEECSTTEEEEEECS---TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTT---
T ss_pred             cccEEEeCCCeEEEECCC---CCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCC---
Confidence            679999998765555432   236899999999999887764211 1223455542 23444455689999999887   


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---CceEEEEEeeccccCCc
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---SSVTALSWVGLDRQKNH  214 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~  214 (298)
                          .+.+..+......  ...+++++..++++..++.|.++|..+.+....+..-. ..   ..+..+.|. ++     
T Consensus        96 ----~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~-dg-----  162 (266)
T 2iwa_A           96 ----LSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI-NG-----  162 (266)
T ss_dssp             ----TEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-----
T ss_pred             ----CcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE-CC-----
Confidence                5556655432111  23355677777777678999999999988776443211 11   135677877 55     


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-----------ccceEEEEEeecCCCCCCCcceEEE
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-----------HVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      .+.+....++.|.+.|..++             +....+. +.+           .....+.|+|+|+++      .+++
T Consensus       163 ~lyvn~~~~~~V~vID~~tg-------------~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~------~lfV  222 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDG-------------TLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENK------RIFV  222 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTC-------------CEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTT------EEEE
T ss_pred             EEEEecCCCCeEEEEECCCC-------------cEEEEEE-CCCcccccccccccccCceEEEEEcCCCC------EEEE
Confidence            45555556789999999887             4444443 111           113568999999984      7888


Q ss_pred             eeeCCCcEEEeEec
Q 037555          284 SCGADNTVRVFQVN  297 (298)
Q Consensus       284 s~~~d~~i~iw~~~  297 (298)
                      ++...+.|...++.
T Consensus       223 Tgk~~~~v~~i~l~  236 (266)
T 2iwa_A          223 TGKLWPKLFEIKLH  236 (266)
T ss_dssp             EETTCSEEEEEEEE
T ss_pred             ECCCCCeEEEEEEe
Confidence            88888888887763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=1.5e-08  Score=81.29  Aligned_cols=197  Identities=9%  Similarity=-0.051  Sum_probs=120.5

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      -..+..|+|++..++...    ..++.|.+|+..+++.. .+. ....+.+++|+++++++++. .+ .|.+||..... 
T Consensus        50 ~~egp~~~~~~~~l~~~d----~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFN----ILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEE----GGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-
T ss_pred             CCcCCeEeCCCCEEEEEE----CCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-
Confidence            457889999765554443    34789999999876543 233 34678999999999877754 34 48889876532 


Q ss_pred             CccceeeeEEeec--cCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          138 GEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       138 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                          ...+.....  ....+..++++|+++++++...      .+.|..++  +++. ..+   .........++|+|++
T Consensus       121 ----~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~---~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          121 ----LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL---FADISIPNSICFSPDG  190 (326)
T ss_dssp             ----EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE---EEEESSEEEEEECTTS
T ss_pred             ----EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe---eCCCcccCCeEEcCCC
Confidence                111111111  1235889999999987665542      24455555  3332 211   1122346789999998


Q ss_pred             ccCCccEE-EEeecCCcEEEEEee--ec-ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          210 RQKNHGFL-AVGMESGVIELWSIS--VN-RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       210 ~~~~~~~l-~~g~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                           ..+ ++...++.|.+|++.  ++ .....        .....   +......+..+++.+++       .+.++.
T Consensus       191 -----~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--------~~~~~---~~~~~~~p~gi~~d~~G-------~lwva~  247 (326)
T 2ghs_A          191 -----TTGYFVDTKVNRLMRVPLDARTGLPTGKA--------EVFID---STGIKGGMDGSVCDAEG-------HIWNAR  247 (326)
T ss_dssp             -----CEEEEEETTTCEEEEEEBCTTTCCBSSCC--------EEEEE---CTTSSSEEEEEEECTTS-------CEEEEE
T ss_pred             -----CEEEEEECCCCEEEEEEcccccCCcccCc--------eEEEE---CCCCCCCCCeeEECCCC-------CEEEEE
Confidence                 555 444567899999986  32 11000        11111   22234556788999888       676666


Q ss_pred             eCCCcEEEeEe
Q 037555          286 GADNTVRVFQV  296 (298)
Q Consensus       286 ~~d~~i~iw~~  296 (298)
                      ..++.|.+|+.
T Consensus       248 ~~~~~v~~~d~  258 (326)
T 2ghs_A          248 WGEGAVDRYDT  258 (326)
T ss_dssp             ETTTEEEEECT
T ss_pred             eCCCEEEEECC
Confidence            56677888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=7.3e-09  Score=85.43  Aligned_cols=212  Identities=7%  Similarity=0.008  Sum_probs=126.7

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccC-----CCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQ-----STAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDD  115 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~  115 (298)
                      .+.++.--..+  .+.++|+|+.|+++....     +..++.|.++|..+++.+..+.-.       ......+.|+|||
T Consensus       111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG  188 (426)
T 3c75_H          111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN  188 (426)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred             EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC
Confidence            34445433445  899999999888885200     012678999999999888776421       1234578999999


Q ss_pred             CEEEEEeC--CCeEEEEEeccCCCCccceeeeEEeeccCC-------ceEEE----------------------------
Q 037555          116 NLLLSVSR--DRQFSVFAIQRTGTGEIDYQLIARQEAHKR-------IIWSC----------------------------  158 (298)
Q Consensus       116 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~v~~~----------------------------  158 (298)
                      ++++++..  ++.|.+.|+.+.       +.+..+.....       .-..+                            
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~-------kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v  261 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGK-------TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT  261 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTT-------EEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred             CEEEEEecCCCCeEEEEECCCC-------eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence            99998874  578999999873       33332221000       00011                            


Q ss_pred             ---------EEccCCCEEEEeeCCCeEEEEEccCCcce--eeeeecCC-------CCCceEEEEEeeccccCCccEEEEe
Q 037555          159 ---------SWNPFGHEFATGSRDKTVKIWAVENKSSV--KQILALPP-------FNSSVTALSWVGLDRQKNHGFLAVG  220 (298)
Q Consensus       159 ---------~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~l~~g  220 (298)
                               .+.+++..++..+..+.|.+.|+......  ..+.....       .......++++|++     ..+++.
T Consensus       262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-----~rlyVa  336 (426)
T 3c75_H          262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-----DRIYLL  336 (426)
T ss_dssp             TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-----TEEEEE
T ss_pred             CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC-----CEEEEE
Confidence                     22344444444444555666665433211  00000000       01112236788887     445544


Q ss_pred             ec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeee-CC
Q 037555          221 ME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCG-AD  288 (298)
Q Consensus       221 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~-~d  288 (298)
                      ..          ++.|.++|..+.             +.+..+.    -......|.|+|++       + ++++.. .+
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~-------------kvv~~I~----vg~~P~gia~spDg-------~~~lyv~n~~s  392 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETG-------------ERINKIE----LGHEIDSINVSQDA-------EPLLYALSAGT  392 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEE----EEEEECEEEECCSS-------SCEEEEEETTT
T ss_pred             ecccccccccCCCCEEEEEECCCC-------------eEEEEEE----CCCCcCeEEEccCC-------CEEEEEEcCCC
Confidence            32          357999999877             5555553    23358899999999       6 777776 58


Q ss_pred             CcEEEeEec
Q 037555          289 NTVRVFQVN  297 (298)
Q Consensus       289 ~~i~iw~~~  297 (298)
                      +.|.++|+.
T Consensus       393 ~~VsVID~~  401 (426)
T 3c75_H          393 QTLHIYDAA  401 (426)
T ss_dssp             TEEEEEETT
T ss_pred             CeEEEEECC
Confidence            999999964

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.17  E-value=2.7e-08  Score=81.22  Aligned_cols=146  Identities=15%  Similarity=0.102  Sum_probs=102.2

Q ss_pred             EcCCCCEEEeEeccCCCCce---EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 037555           64 CDHQGKLVASSCKAQSTAAA---EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVF  130 (298)
Q Consensus        64 ~s~~~~~l~~~~~~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw  130 (298)
                      ..|+++++.+....   ...   .|.++|..+++.+..+.....+  .++++||+++++++.          .++.|.+|
T Consensus        28 ~~~~~~~~yv~~~~---~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           28 PGADGRRSYINLPA---HHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCEEEEeCCc---ccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence            34677777776310   122   8999999999988777644443  899999999988886          36789999


Q ss_pred             EeccCCCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeee-cCCCCCce
Q 037555          131 AIQRTGTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILA-LPPFNSSV  200 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~v  200 (298)
                      |..+       .+.+..+...       ......+.|+|++++|+++..  ++.|.++| .+++...   . +. ...  
T Consensus       103 D~~t-------~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~---~~i~-~~~--  168 (373)
T 2mad_H          103 DPVT-------FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD---QLLS-SPT--  168 (373)
T ss_pred             ECCC-------CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe---EEcC-CCc--
Confidence            9876       3333333211       123457899999999998874  57899999 8887765   3 33 222  


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                       ++.+.|.+.    ..+++.+.||.+.+++. ++
T Consensus       169 -~~~~~~~~~----~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          169 -CYHIHPGAP----STFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             -eEEEEeCCC----ceEEEEcCCCCEEEEEC-CC
Confidence             245566653    56677778999999999 65

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.12  E-value=4.3e-09  Score=85.11  Aligned_cols=202  Identities=6%  Similarity=-0.035  Sum_probs=124.0

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCE-EEEEe---C
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNL-LLSVS---R  123 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~---~  123 (298)
                      +|-..+..++++++++++++-.......+..|.+||+.+++.+..+..      +...+..+++++++.. +++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            355689999999998866654210000146899999998886655432      2245688999986544 45544   6


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeec-----------------------------cCCceEEEEEccCCCEEEEeeCCC
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEA-----------------------------HKRIIWSCSWNPFGHEFATGSRDK  174 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~dg  174 (298)
                      ++.|.+||+....       ....+..                             ....+..++|+|+++.|+++..++
T Consensus       144 ~~~i~v~d~~~g~-------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          144 KAALIRVDLQTGL-------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             GCEEEEEETTTCC-------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             CCeEEEEECCCCC-------EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence            7899999987532       1111110                             012368899999999888887665


Q ss_pred             -eEEEEEccC---Cc-----ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          175 -TVKIWAVEN---KS-----SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       175 -~i~~wd~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                       .|..++...   ..     ....+ ...++......+++++++     .++++...++.|.+||..++           
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~~g~pdgia~d~~G-----~l~va~~~~~~V~~~d~~~G-----------  279 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKI-ERYSEKPICDGISIDKDH-----NIYVGDLAHSAIGVITSADR-----------  279 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTC-EEEEECCSCSCEEECTTC-----CEEEEEGGGTEEEEEETTTT-----------
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcce-EecccCCCCceEEECCCC-----CEEEEccCCCeEEEEECCCC-----------
Confidence             455554321   10     00000 000122345678999887     78888888899999998333           


Q ss_pred             CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                        +. ..+... .+...+.+++|.+++       .++++.+..+.
T Consensus       280 --~~-~~~~~~-~~~~~p~~va~~~~g-------~l~v~~~~~~~  313 (343)
T 2qe8_A          280 --AY-KLLVTD-EKLSWTDSFNFGSDG-------YLYFDCNQLHH  313 (343)
T ss_dssp             --EE-EEEEEC-GGGSCEEEEEECTTS-------CEEEEECCGGG
T ss_pred             --CE-EEEEEC-CceecCCeeEECCCC-------cEEEEeCcccc
Confidence              21 111111 134568899999988       67777664443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=2.4e-08  Score=88.45  Aligned_cols=197  Identities=11%  Similarity=0.077  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCEEEeEeccCC--------CCceEEEEEEcCCcee----eecccc-ccccEEEEEEcCCCCEEEEEeC---
Q 037555           60 FSLCCDHQGKLVASSCKAQS--------TAAAEIWLWEVGSWKA----MGRLQS-HSLTVTQIRFSHDDNLLLSVSR---  123 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~--------~~d~~i~vw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---  123 (298)
                      ..++|+ |++.|+.+..+..        .....|++|++.+...    +..... |...+..+.|+|||++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            567899 9999998876421        1235699999976542    222333 4456788999999998755432   


Q ss_pred             -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc--eeeeeecCCC
Q 037555          124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS--VKQILALPPF  196 (298)
Q Consensus       124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~--~~~~~~~~~~  196 (298)
                       ...|+++|+..+..      ....+..+....... |++++..|+..+.    .+.|..+|+.+...  ..   .+..+
T Consensus       257 ~~~~i~~~d~~~~~~------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~---~l~~~  326 (693)
T 3iuj_A          257 SGNRLYVKDLSQENA------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR---DLIPE  326 (693)
T ss_dssp             SCCEEEEEETTSTTC------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE---EEECC
T ss_pred             CCcEEEEEECCCCCC------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE---EEecC
Confidence             35899999876421      133344455555554 6666666655543    26799999987654  22   22234


Q ss_pred             CCceEEEEEeeccccCCccEEEEe-ecCC--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC
Q 037555          197 NSSVTALSWVGLDRQKNHGFLAVG-MESG--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK  273 (298)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  273 (298)
                      ...+.  .|++++     ..|+.. ..++  .|++|++...              ....+. + .....+..+.++++++
T Consensus       327 ~~~~~--~~s~~g-----~~lv~~~~~~g~~~l~~~d~~g~--------------~~~~l~-~-p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          327 RQQVL--TVHSGS-----GYLFAEYMVDATARVEQFDYEGK--------------RVREVA-L-PGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             CSSCE--EEEEET-----TEEEEEEEETTEEEEEEECTTSC--------------EEEEEC-C-SSSSEEEECCCCTTCS
T ss_pred             CCCEE--EEEEEC-----CEEEEEEEECCeeEEEEEECCCC--------------eeEEee-c-CCCceEEeeecCCCCC
Confidence            44444  888887     455544 4455  5778876532              222221 1 1345677778887772


Q ss_pred             CCCCcceEEEeeeC---CCcEEEeEe
Q 037555          274 PKNSRTMQLASCGA---DNTVRVFQV  296 (298)
Q Consensus       274 ~~~~~~~~l~s~~~---d~~i~iw~~  296 (298)
                            .++++.+.   -+.|..||+
T Consensus       384 ------~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          384 ------ALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ------CEEEEEECSSSCCEEEEECT
T ss_pred             ------EEEEEecCCCCCCEEEEEEC
Confidence                  33333332   166777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=2.2e-08  Score=82.04  Aligned_cols=196  Identities=12%  Similarity=0.174  Sum_probs=126.5

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccc-------cccccEEEEEEcCCCCEEEEEeCC------CeEE
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQ-------SHSLTVTQIRFSHDDNLLLSVSRD------RQFS  128 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~  128 (298)
                      +++++|++.+.    .++.|+|+|+.+.    +..+++.       .....-..+...|+| +++++..+      |.|.
T Consensus        93 ~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence            78888888764    5789999998755    5555552       112245677889999 77776655      7899


Q ss_pred             EEEeccCCCCccceeeeEEeeccCC---ceEEEEEccCCCEEEEee-------------------CCCeEEEEEccCCcc
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKR---IIWSCSWNPFGHEFATGS-------------------RDKTVKIWAVENKSS  186 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~dg~i~~wd~~~~~~  186 (298)
                      ++|..+       .+.+..+.....   .-..+.|+|+++.+++..                   .+.+|.+||+.+.+.
T Consensus       168 vlD~~T-------~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          168 MLDHYS-------FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             EECTTT-------CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred             EEECCC-------CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence            999887       455665542222   234688899999888885                   368999999998766


Q ss_pred             eeeeeecCCCCCceEEEEE--eeccccCCccEEEEee------cCCcEEEEEeeecccccccCCCCCCcceeeee--cc-
Q 037555          187 VKQILALPPFNSSVTALSW--VGLDRQKNHGFLAVGM------ESGVIELWSISVNRTNDVSTPAPSTANIIIRF--DP-  255 (298)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~-  255 (298)
                      ...+ .+.........+.|  +|++     .++.+++      .++.|.+|....+..           .....+  .. 
T Consensus       241 ~~tI-~vg~~g~~P~~i~f~~~Pdg-----~~aYV~~e~~~~~Lss~V~v~~~d~g~~-----------~~~~vIdi~~~  303 (462)
T 2ece_A          241 IHSL-TLGEENRMALELRPLHDPTK-----LMGFINMVVSLKDLSSSIWLWFYEDGKW-----------NAEKVIEIPAE  303 (462)
T ss_dssp             EEEE-ESCTTEEEEEEEEECSSTTC-----CEEEEEEEEETTTCCEEEEEEEEETTEE-----------EEEEEEEECCE
T ss_pred             eeEE-ecCCCCCccceeEeeECCCC-----CEEEEEEeeeccCCCceEEEEEecCCce-----------eEEEEEeCCCc
Confidence            6533 22112234455655  8888     5666555      567888887754311           111111  10 


Q ss_pred             ------------CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          256 ------------FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       256 ------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                                  +.+-......|.+++|++      .+.++.-..+.|.+||+
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr------fLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDK------FLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSC------EEEEEETTTTEEEEEEC
T ss_pred             cccccccccccccccCCCceeEEEECCCCC------EEEEEeCCCCEEEEEEe
Confidence                        000124578899999993      44455556789999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.11  E-value=3.2e-08  Score=80.27  Aligned_cols=202  Identities=10%  Similarity=0.080  Sum_probs=123.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      ...+.|+|||++|+++..   ..++.|.++|+.+++.+.++....  . ...+....+.+++.+.||.+.+.++......
T Consensus       139 P~~~a~spDGk~lyVan~---~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQF---SPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             GGGEEECTTSSEEEEEEC---SSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CceEEEcCCCCEEEEEEc---CCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            446899999999998853   236899999999999988875321  1 1223224456778888898888888652211


Q ss_pred             ccceeeeEEeeccCCceE-EEEEc-cCCCEEEEeeCCCeEEEEEccCCcc--eeeeeecC-------CCCCceEEEEEee
Q 037555          139 EIDYQLIARQEAHKRIIW-SCSWN-PFGHEFATGSRDKTVKIWAVENKSS--VKQILALP-------PFNSSVTALSWVG  207 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~-------~~~~~v~~~~~~~  207 (298)
                      .  ......+.....++. ...|. +++++++ .+.+|.|.+.|+.+...  ...+..+.       ........+++++
T Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          213 E--ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             E--EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             E--EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            0  000011111112222 24554 5665444 56689999999976542  22111010       0123344577788


Q ss_pred             ccccCCccEEEEeec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCC
Q 037555          208 LDRQKNHGFLAVGME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNS  277 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  277 (298)
                      ++     ..++....          ...|.++|+.+.             +.+..+.    -...+.+|.+++|++    
T Consensus       290 ~~-----~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-------------kv~~~i~----vg~~~~~lavs~D~~----  343 (386)
T 3sjl_D          290 AL-----DRIYLLVDQRDEWRHKTASRFVVVLDAKTG-------------ERLAKFE----MGHEIDSINVSQDEK----  343 (386)
T ss_dssp             TT-----TEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEE----EEEEECEEEECSSSS----
T ss_pred             CC-----CeEEEEeccccccccCCCCCEEEEEECCCC-------------eEEEEEE----CCCCcceEEECCCCC----
Confidence            76     45555432          247999999887             5556554    235788999999982    


Q ss_pred             cceEEEe-eeCCCcEEEeEec
Q 037555          278 RTMQLAS-CGADNTVRVFQVN  297 (298)
Q Consensus       278 ~~~~l~s-~~~d~~i~iw~~~  297 (298)
                        .+|++ ...++.|.++|..
T Consensus       344 --~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          344 --PLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             --CEEEEEETTTTEEEEEETT
T ss_pred             --eEEEEEcCCCCeEEEEECC
Confidence              25544 5668999999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=2.3e-08  Score=81.05  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFA  131 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd  131 (298)
                      ....|+++.+++........++.|.++|..+++.+..+.....+ . ++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            34568898888885310012679999999999999888754555 4 99999999887775          367899999


Q ss_pred             eccCCCCccceeeeEEeeccC-------CceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          132 IQRTGTGEIDYQLIARQEAHK-------RIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      ..+       .+.+..+.-..       .....+.|+|++++++++..  ++.|.++|+.+.+.+..+ ...+      +
T Consensus       116 ~~t-------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g------~  181 (386)
T 3sjl_D          116 PVT-------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD------C  181 (386)
T ss_dssp             TTT-------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS------E
T ss_pred             CCC-------CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC------c
Confidence            987       44455443211       23457899999999988864  689999999999887744 2221      1


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ....|.+.    ..+++.+.||.+.+.++..
T Consensus       182 ~~~~P~g~----~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          182 YHIFPTAP----DTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEEEEEET----TEEEEEETTSCEEEEECCS
T ss_pred             ceeecCCC----ceeEEECCCCCEEEEECCC
Confidence            22335442    5667888899999998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=9.7e-12  Score=101.66  Aligned_cols=142  Identities=11%  Similarity=0.040  Sum_probs=76.3

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ++..+++++     .|+.|+.||..+|+.+..+..  ..+.+..+..++..+++++.||.|+.||..+++       .+.
T Consensus         8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-------~~w   73 (369)
T 2hz6_A            8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-------GLT   73 (369)
T ss_dssp             CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-------CSE
T ss_pred             eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-------eee
Confidence            467788884     489999999999998877764  455555556677788888899999999987643       222


Q ss_pred             EeeccC-CceE-EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555          147 RQEAHK-RIIW-SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG  224 (298)
Q Consensus       147 ~~~~~~-~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg  224 (298)
                      ....+. ..+. ...+. .+..+++++.|+.|+.||.++++...   .+..+.    ...++|.+     ..+++++.++
T Consensus        74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~-----~~v~~~~~dg  140 (369)
T 2hz6_A           74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPST-----SLLYLGRTEY  140 (369)
T ss_dssp             ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEE
T ss_pred             eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCCC----cccccccC-----CEEEEEecCC
Confidence            221111 0110 00111 34578888889999999999988766   333222    23445555     6888889999


Q ss_pred             cEEEEEeeecc
Q 037555          225 VIELWSISVNR  235 (298)
Q Consensus       225 ~i~vwd~~~~~  235 (298)
                      .|+.||.++++
T Consensus       141 ~v~a~d~~tG~  151 (369)
T 2hz6_A          141 TITMYDTKTRE  151 (369)
T ss_dssp             EEECCCSSSSS
T ss_pred             EEEEEECCCCC
Confidence            99999998873

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.01  E-value=1.3e-07  Score=71.88  Aligned_cols=194  Identities=11%  Similarity=0.113  Sum_probs=121.1

Q ss_pred             eEEeccCCCc--eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEE--EEEEcCCCCEEEEE-eC
Q 037555           49 SHKLYGHGNE--LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT--QIRFSHDDNLLLSV-SR  123 (298)
Q Consensus        49 ~~~~~~h~~~--v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~-~~  123 (298)
                      ++++ .|...  ...+.|+ ++.++.+++.   .....|+++|+.+++.+..+.... ...  .+++  +++.|... -.
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~---~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~~ly~ltw~  105 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGL---NGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKDKIVGLTWK  105 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEE---TTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETTEEEEEESS
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCC---CCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCCEEEEEEee
Confidence            4444 45544  4788998 6666666643   224589999999999888765322 222  3444  34444444 45


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCC-CceE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFN-SSVT  201 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~-~~v~  201 (298)
                      ++.+.++|..+       .+.+.++....   ....+.+++..|+....++.|.++|..+.+....+..-. +.. ..++
T Consensus       106 ~~~v~v~D~~t-------~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          106 NGLGFVWNIRN-------LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             SSEEEEEETTT-------CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             CCEEEEEECcc-------CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            89999999987       55666665432   222334567777777668889999999988777443211 111 2344


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CC-------cccceEEEEEeecCC
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FA-------CHVAAVNRMAWKTHE  272 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~v~~~~~~~~~  272 (298)
                      .+.|. ++     .+.+..-.+..|.+.|..++             +....+.-  +.       .-....+.|+|+|++
T Consensus       176 ELe~~-~G-----~lyan~w~~~~I~vIDp~tG-------------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~  236 (262)
T 3nol_A          176 ELEWV-DG-----EIFANVWQTNKIVRIDPETG-------------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH  236 (262)
T ss_dssp             EEEEE-TT-----EEEEEETTSSEEEEECTTTC-------------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred             eeEEE-CC-----EEEEEEccCCeEEEEECCCC-------------cEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence            57775 44     45555556889999999887             34333321  10       112467899999987


Q ss_pred             CCCCCcceEEEee
Q 037555          273 KPKNSRTMQLASC  285 (298)
Q Consensus       273 ~~~~~~~~~l~s~  285 (298)
                      +      .+++||
T Consensus       237 ~------~lfVTG  243 (262)
T 3nol_A          237 H------RLFVTG  243 (262)
T ss_dssp             T------EEEEEE
T ss_pred             C------EEEEEC
Confidence            3      555555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.98  E-value=5.4e-08  Score=80.28  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=103.3

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccC
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRT  135 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~  135 (298)
                      ++++.+++.........+.|.++|..+++.+.++.....+  .++++||+++++++.          .++.|.++|..+ 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence            5677666664310000179999999999999888755555  899999999888776          467899999887 


Q ss_pred             CCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          136 GTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                            .+.+..+.-.       ......+.|+|++++++++..  ++.|.+.|+.+.+....+. ..   .   +....
T Consensus       159 ------~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~---g---~~~~~  225 (426)
T 3c75_H          159 ------FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VP---D---CYHIF  225 (426)
T ss_dssp             ------CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CC---S---EEEEE
T ss_pred             ------CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cC---C---ceeec
Confidence                  4445444321       123457899999999999874  5789999999988877442 21   1   13445


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeee
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      |.+.    ..+++.+.||.+.+.+...
T Consensus       226 p~g~----~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          226 PASP----TVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             EEET----TEEEEEETTSSEEEEECCT
T ss_pred             cCCC----cEEEEEcCCCCEEEEECCC
Confidence            5543    4566677888888888843

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=3e-06  Score=65.76  Aligned_cols=197  Identities=8%  Similarity=-0.023  Sum_probs=119.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  135 (298)
                      ..+..++|++++..|..+.    ...+.|.+++.........+.........+++++++..| ++-...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d----~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTD----ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEE----TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEE----CCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            3578999999777666664    346899999987654333232222467899999975544 44455788999987632


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      .     ...+  ..........++++|++..|+.+..   .+.|..+++.... ...+..  ........+++++++.  
T Consensus       112 ~-----~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~--~~~~~P~gia~d~~~~--  179 (267)
T 1npe_A          112 Q-----RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ--DNLGLPNGLTFDAFSS--  179 (267)
T ss_dssp             S-----CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC--TTCSCEEEEEEETTTT--
T ss_pred             C-----EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE--CCCCCCcEEEEcCCCC--
Confidence            1     1111  1111245688999997666665553   3688888876433 221111  1234578999999762  


Q ss_pred             CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555          213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR  292 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  292 (298)
                        .++++-...+.|.+++....             .....+.   . ......++.. .+       .++++....+.|.
T Consensus       180 --~lyv~d~~~~~I~~~~~~g~-------------~~~~~~~---~-~~~P~gi~~d-~~-------~lyva~~~~~~v~  232 (267)
T 1npe_A          180 --QLCWVDAGTHRAECLNPAQP-------------GRRKVLE---G-LQYPFAVTSY-GK-------NLYYTDWKTNSVI  232 (267)
T ss_dssp             --EEEEEETTTTEEEEEETTEE-------------EEEEEEE---C-CCSEEEEEEE-TT-------EEEEEETTTTEEE
T ss_pred             --EEEEEECCCCEEEEEecCCC-------------ceEEEec---C-CCCceEEEEe-CC-------EEEEEECCCCeEE
Confidence              44455556788999998653             2111111   1 1223455554 33       5666665667888


Q ss_pred             EeEe
Q 037555          293 VFQV  296 (298)
Q Consensus       293 iw~~  296 (298)
                      .+|.
T Consensus       233 ~~d~  236 (267)
T 1npe_A          233 AMDL  236 (267)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            7775

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.96  E-value=5.4e-08  Score=78.91  Aligned_cols=219  Identities=5%  Similarity=-0.058  Sum_probs=125.6

Q ss_pred             CCceEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcC
Q 037555           46 WPESHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSH  113 (298)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~  113 (298)
                      +..+.++..-..+  .+.++|++++++++...     ++..++.|.+||+.+++.+..+...       ......++++|
T Consensus        56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp  133 (368)
T 1mda_H           56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence            3455666544556  79999999999888521     0013689999999999998887533       12356799999


Q ss_pred             CCCEEEEEeC--CCeEEE--EEeccCCCCccceeeeEEeec---------cCCceEEEE---------------------
Q 037555          114 DDNLLLSVSR--DRQFSV--FAIQRTGTGEIDYQLIARQEA---------HKRIIWSCS---------------------  159 (298)
Q Consensus       114 ~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~---------------------  159 (298)
                      ||++++++..  +..+.+  +|..+...-.. .........         ..+.+..+.                     
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v-~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v  212 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhhceEEEC-CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence            9999998874  467888  88754000000 000000000         000000000                     


Q ss_pred             -----EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeeccccCCccEEEEeec--
Q 037555          160 -----WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGLDRQKNHGFLAVGME--  222 (298)
Q Consensus       160 -----~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~l~~g~~--  222 (298)
                           ..+++..++..+. +.|.+.|+....... +..+..          .......++++|++     ..++.+..  
T Consensus       213 g~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-----~~lyV~~~~~  285 (368)
T 1mda_H          213 SSQAAQANYPGMLVWAVA-SSILQGDIPAAGATM-KAAIDGNESGRKADNFRSAGFQMVAKLKNT-----DGIMILTVEH  285 (368)
T ss_dssp             CSCCEEETTTTEEEECBS-SCCEEEECCSSCCEE-ECCCCSSCTHHHHTTEEECSSSCEEEETTT-----TEEEEEEEEC
T ss_pred             CCCccccccCCEEEEEcC-CEEEEEECCCCcceE-EEEEEeccccccccccccCcceeeEEcCCC-----CEEEEEeccc
Confidence                 0333344444444 667777765422110 001110          01112226788887     45555432  


Q ss_pred             -------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CCCcEEEe
Q 037555          223 -------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-ADNTVRVF  294 (298)
Q Consensus       223 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw  294 (298)
                             ++.+.++|+.+.             +.+..+.    -......|+|+||++      .++++.. .++.|.++
T Consensus       286 ~~~~~~~~~~~~ViD~~t~-------------~vv~~i~----vg~~p~gi~~s~Dg~------~l~va~~~~~~~VsVI  342 (368)
T 1mda_H          286 SRSCLAAAENTSSVTASVG-------------QTSGPIS----NGHDSDAIIAAQDGA------SDNYANSAGTEVLDIY  342 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSC-------------CEEECCE----EEEEECEEEECCSSS------CEEEEEETTTTEEEEE
T ss_pred             cCcccccCCCEEEEECCCC-------------eEEEEEE----CCCCcceEEECCCCC------EEEEEccCCCCeEEEE
Confidence                   235669999876             4444432    223688999999983      4777777 69999999


Q ss_pred             Eec
Q 037555          295 QVN  297 (298)
Q Consensus       295 ~~~  297 (298)
                      |+.
T Consensus       343 D~~  345 (368)
T 1mda_H          343 DAA  345 (368)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            974

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.92  E-value=3.8e-06  Score=64.19  Aligned_cols=209  Identities=12%  Similarity=0.135  Sum_probs=132.3

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      +.+.+-...+..++|+|++..|++..    ..++.|...|.. ++.+..+. ........+++.+++.++++.-.++.+.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~----d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTI----NKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEE----ETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEE----CCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            46667777899999999877666654    348899999998 77776653 1224578889998887777766778999


Q ss_pred             EEEeccCCCCccceeeeEEe------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC---Ccceeeeee----cCC
Q 037555          129 VFAIQRTGTGEIDYQLIARQ------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN---KSSVKQILA----LPP  195 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~----~~~  195 (298)
                      ++++......    ......      ...+.....++|+|.++.|+++.......+|.++.   ...+..+..    -..
T Consensus        95 ~~~v~~~~~i----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           95 VISLTPNSEV----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             EEEECTTCCE----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             EEEcCCCCee----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            9988764320    111111      12345578999999987777776555555555541   111111100    011


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC-cc------cceEEEEEe
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA-CH------VAAVNRMAW  268 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~v~~~~~  268 (298)
                      ....+.+++++|...    .+++....+..|.++|....              ....+. +. +.      -..-..|+|
T Consensus       171 ~~~d~S~l~~dp~tg----~lliLS~~s~~L~~~d~~g~--------------~~~~~~-L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKN----TLLVLSHESRALQEVTLVGE--------------VIGEMS-LTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             CSSCCCEEEEETTTT----EEEEEETTTTEEEEECTTCC--------------EEEEEE-CSTTGGGCSSCCCSEEEEEE
T ss_pred             ccCCceeEEEcCCCC----eEEEEECCCCeEEEEcCCCC--------------EEEEEE-cCCccCCcccccCCCCeeEE
Confidence            234578999999763    67777777888888886532              222221 22 11      125678999


Q ss_pred             ecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          269 KTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       269 ~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      .+++       +++++ ++-+.++.+
T Consensus       232 d~~G-------~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          232 DASG-------NIYIV-SEPNRFYRF  249 (255)
T ss_dssp             CTTC-------CEEEE-ETTTEEEEE
T ss_pred             CCCC-------CEEEE-cCCceEEEE
Confidence            9999       65555 555655544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=5.1e-07  Score=74.06  Aligned_cols=162  Identities=14%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             ceEEEEEcCCCCEEEeEecc-CCCCceEEEEEEcCCceeeeccccc--c-ccEEEEEEcCCCCEEEEEe-----------
Q 037555           58 ELFSLCCDHQGKLVASSCKA-QSTAAAEIWLWEVGSWKAMGRLQSH--S-LTVTQIRFSHDDNLLLSVS-----------  122 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~-~~~~d~~i~vw~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~~-----------  122 (298)
                      ....+.+.|+| +++++..+ .+...+.|.++|..+.+.+.++...  . ..-..+.|+|+++.+++..           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            45567888999 66655331 1122378999999999988887622  1 2234688899999988885           


Q ss_pred             --------CCCeEEEEEeccCCCCccceeeeEEeecc--CCceEEEEE--ccCCCEEEEee------CCCeEEEEEccCC
Q 037555          123 --------RDRQFSVFAIQRTGTGEIDYQLIARQEAH--KRIIWSCSW--NPFGHEFATGS------RDKTVKIWAVENK  184 (298)
Q Consensus       123 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~------~dg~i~~wd~~~~  184 (298)
                              ....|.+||+..       .+.+..+...  ......+.|  +|++++++++.      .+++|.+|....+
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~-------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRK-------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTT-------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             chhhhhhccCCEEEEEECCC-------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence                    368999999986       3444444432  123445555  99998887776      4668877666542


Q ss_pred             cceeeeee--cCC----------------CCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeee
Q 037555          185 SSVKQILA--LPP----------------FNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISV  233 (298)
Q Consensus       185 ~~~~~~~~--~~~----------------~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~  233 (298)
                      . ......  +..                .......+.+++++     ++|.++. ..+.|.+||+..
T Consensus       291 ~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-----rfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          291 K-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-----KFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             E-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-----CEEEEEETTTTEEEEEECSS
T ss_pred             c-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-----CEEEEEeCCCCEEEEEEecC
Confidence            2 111111  110                02457889999999     5666665 468999999864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=7.5e-07  Score=67.81  Aligned_cols=188  Identities=9%  Similarity=0.003  Sum_probs=119.6

Q ss_pred             cCCCc--eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccE--EEEEEcCCCCEEEEEeCCCeEEE
Q 037555           54 GHGNE--LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV--TQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        54 ~h~~~--v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      .|...  ...+.|+. +.++.+.     +.++.|+++|+.+++.+..+ -. ...  ..+++.. +++.+..-.++.+.+
T Consensus        50 phd~~~ftqGL~~~~-~~Ly~st-----G~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           50 PHATNAFTQGLVFHQ-GHFFEST-----GHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFT  120 (268)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEE-----TTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred             cCCCccccceEEEEC-CEEEEEc-----CCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence            45443  46888873 4455555     45778999999999988776 22 222  3355543 344555556899999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEe
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWV  206 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~  206 (298)
                      ||..+       .+.+.++..... -..++  +++..|+.+..++.|.++|..+.+....+..- ....   .++.+.|.
T Consensus       121 ~D~~T-------l~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          121 WSGMP-------PQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA  189 (268)
T ss_dssp             EETTT-------TEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE
T ss_pred             EECCc-------CcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe
Confidence            99987       566666654322 23444  56777777777899999999998877744321 1222   34566766


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--C--------CcccceEEEEEeecCCCCCC
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--F--------ACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~v~~~~~~~~~~~~~  276 (298)
                       ++     .+.+....+..|.+.|..++             +.+..+.-  +        ..-....+.|+++|+++   
T Consensus       190 -dG-----~lyanvw~s~~I~vIDp~TG-------------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~---  247 (268)
T 3nok_A          190 -NG-----VIYANIWHSSDVLEIDPATG-------------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG---  247 (268)
T ss_dssp             -TT-----EEEEEETTCSEEEEECTTTC-------------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC---
T ss_pred             -CC-----EEEEEECCCCeEEEEeCCCC-------------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCC---
Confidence             44     45554446789999999887             44333321  0        11234678999999873   


Q ss_pred             CcceEEEeee
Q 037555          277 SRTMQLASCG  286 (298)
Q Consensus       277 ~~~~~l~s~~  286 (298)
                         ++++||-
T Consensus       248 ---rlfVTGK  254 (268)
T 3nok_A          248 ---RIFMTGK  254 (268)
T ss_dssp             ---CEEEEET
T ss_pred             ---EEEEeCC
Confidence               6666663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.89  E-value=1.2e-06  Score=66.14  Aligned_cols=192  Identities=14%  Similarity=0.114  Sum_probs=119.0

Q ss_pred             cCCC--ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-EEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555           54 GHGN--ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSHDDNLLLSVSRDRQFSVF  130 (298)
Q Consensus        54 ~h~~--~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iw  130 (298)
                      .|..  -...+.|++ +.++.+.+.   .....|+++|+.+++.+..+...... -..+++. .+++....-.++.+.+|
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~---~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGE---TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECC---TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred             CCCCccccccEEEEC-CEEEEECCC---CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEE
Confidence            4554  366899986 555555543   22468999999999988776532221 1233443 23344445568999999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---CceEEEEEee
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---SSVTALSWVG  207 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~v~~~~~~~  207 (298)
                      |..+       .+.+.++...... ..++  +++..|+.+..++.|.++|..+.+....+..- .+.   ..++.+.+. 
T Consensus        91 D~~t-------l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           91 DLAT-------LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV-  158 (243)
T ss_dssp             ETTT-------TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-
T ss_pred             ECCc-------CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe-
Confidence            9987       5666666643322 3444  55666666667889999999998877644321 122   234556655 


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--C--------CcccceEEEEEeecCCCCCCC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--F--------ACHVAAVNRMAWKTHEKPKNS  277 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~v~~~~~~~~~~~~~~  277 (298)
                      ++     .+.+..-.+..|.+.|..++             +.+..+.-  +        ..-....+.|+++|++.    
T Consensus       159 ~G-----~lyanvw~s~~I~vIDp~tG-------------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~----  216 (243)
T 3mbr_X          159 NG-----ELLANVWLTSRIARIDPASG-------------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD----  216 (243)
T ss_dssp             TT-----EEEEEETTTTEEEEECTTTC-------------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT----
T ss_pred             CC-----EEEEEECCCCeEEEEECCCC-------------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC----
Confidence            33     44444446788999999887             33333321  1        01234678999999873    


Q ss_pred             cceEEEeee
Q 037555          278 RTMQLASCG  286 (298)
Q Consensus       278 ~~~~l~s~~  286 (298)
                        ++++||-
T Consensus       217 --~lfVTGK  223 (243)
T 3mbr_X          217 --RLFVTGK  223 (243)
T ss_dssp             --EEEEEET
T ss_pred             --EEEEECC
Confidence              5666653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.89  E-value=8.8e-07  Score=79.13  Aligned_cols=166  Identities=12%  Similarity=0.060  Sum_probs=96.8

Q ss_pred             cCCC-ceEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCC-----C
Q 037555           54 GHGN-ELFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----R  125 (298)
Q Consensus        54 ~h~~-~v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g  125 (298)
                      +|.. .+...+|| |||++||.+....+.+...|+++|+.++ +.+...  -......+.|+||++.|+....+     .
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            3443 67889999 9999998775432233457999999988 632210  11223568899999877776654     2


Q ss_pred             eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCc-ce--eeeeecCCCCCc
Q 037555          126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKS-SV--KQILALPPFNSS  199 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~-~~--~~~~~~~~~~~~  199 (298)
                      .|.++++.+....   ...+.. .........+.|+|++++|+..+.   ...|.++|+.++. ..  ..  ........
T Consensus       248 ~v~~~~lgt~~~~---~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~  321 (751)
T 2xe4_A          248 KVWRHVMGKLQSE---DVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI--VRPREKGV  321 (751)
T ss_dssp             EEEEEETTSCGGG---CEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE--SSCCCTTC
T ss_pred             EEEEEECCCCchh---cEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE--eecCCCCc
Confidence            5666676543210   111211 122344567899999998877653   3468888988752 12  21  12223344


Q ss_pred             eEEEEEeeccccCCccEEEEeecC--C--cEEEEEee
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMES--G--VIELWSIS  232 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~d--g--~i~vwd~~  232 (298)
                      ..++.|+..+     .+++....+  +  .|..+++.
T Consensus       322 ~~s~~~~~g~-----~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          322 RYDVQMHGTS-----HLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             CEEEEEETTT-----EEEEEECTTTCTTCEEEEEETT
T ss_pred             eEEEeeeeCC-----EEEEEeCCCCCCCcEEEEEcCC
Confidence            5555554433     455555444  3  44455543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=1.9e-07  Score=79.19  Aligned_cols=200  Identities=11%  Similarity=0.060  Sum_probs=131.1

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEE-c-CCCCEEEEEe------------------CC
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRF-S-HDDNLLLSVS------------------RD  124 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~d  124 (298)
                      +||++|.....    .+..|.+.|+.+.+....+.- .......+++ + |++.++++++                  .+
T Consensus        99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            48888888764    477899999999987774432 2245778887 5 8999988885                  24


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC------------------------------
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK------------------------------  174 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------  174 (298)
                      +.+.+.|..+       .+...++.-.. ....++++|+++++++.+.+.                              
T Consensus       175 ~~vtvID~~t-------~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          175 NVFTAVDADK-------WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             EEEEEEETTT-------TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ceEEEEECCC-------CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence            5788888876       44455444222 346678999999988887543                              


Q ss_pred             --------eEEEEEccC--Ccc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555          175 --------TVKIWAVEN--KSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA  243 (298)
Q Consensus       175 --------~i~~wd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  243 (298)
                              .|.+.|.++  ++. +.   .++ ......++.++|++.    .+++++..+..|.++|+.+......-.. 
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~---~Ip-vg~~PhGv~~sPDGk----~v~V~~~~s~~VsVid~~~~~~~~~~~l-  317 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTR---YIP-IANNPHGCNMAPDKK----HLCVAGKLSPTVTVLDVTRFDAVFYENA-  317 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEE---EEE-EESSCCCEEECTTSS----EEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred             CCCeeEECcEEEEeCcccCCceeEE---EEe-cCCCceEEEEcCCCC----EEEEeCCCCCeEEEEECccccccccccc-
Confidence                    366666665  322 22   222 223457899999994    4555555788999999986421000000 


Q ss_pred             CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .........+    .-......++|+|++       ...++.-.|+.|.+||++
T Consensus       318 ~~~~~v~~~v----~vG~gP~h~aF~~dG-------~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          318 DPRSAVVAEP----ELGLGPLHTAFDGRG-------NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             CGGGGEEECC----BCCSCEEEEEECTTS-------EEEEEETTTTEEEEEEHH
T ss_pred             CcccceEEEc----CCCCCcceEEECCCC-------eEEEEEecCCcEEEEEhh
Confidence            0000111222    134567889999999       888888899999999974

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.75  E-value=1.1e-06  Score=77.56  Aligned_cols=182  Identities=10%  Similarity=0.046  Sum_probs=115.3

Q ss_pred             EEEEEcCCCCEEEeEeccCCC----------Cc----eEEEEEEcCCceeeecccc--cc-------ccEEEEEEcCCC-
Q 037555           60 FSLCCDHQGKLVASSCKAQST----------AA----AEIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFSHDD-  115 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~----------~d----~~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~-  115 (298)
                      ..++++|++..++.+..+...          .+    +.|..+|..+++.+-.++.  |.       .....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            367888988888877431100          00    2599999999988766542  21       122223333467 


Q ss_pred             --CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-----------CCce------------------------EEE
Q 037555          116 --NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-----------KRII------------------------WSC  158 (298)
Q Consensus       116 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~v------------------------~~~  158 (298)
                        ..++.++.+|.++++|..+++       ++......           ..++                        ..+
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~-------~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~  398 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGK-------FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM  398 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCC-------EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred             EeeEEEEECCCCEEEEEECCCCC-------EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence              678999999999999988743       22222110           0111                        146


Q ss_pred             EEccCCCEEEEeeC-------------------------------------------CCeEEEEEccCCcceeeeeecCC
Q 037555          159 SWNPFGHEFATGSR-------------------------------------------DKTVKIWAVENKSSVKQILALPP  195 (298)
Q Consensus       159 ~~~~~~~~l~~~~~-------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~  195 (298)
                      +++|+..++++...                                           .|.|..||+.+++......    
T Consensus       399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----  474 (677)
T 1kb0_A          399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----  474 (677)
T ss_dssp             EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----
T ss_pred             eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC----
Confidence            78888888877543                                           2789999999988776432    


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (298)
                      +..++....+...+     .+++.++.||.+++||.+++             +.+..+..  ++...-.-+.+..++
T Consensus       475 ~~~~~~~g~~~~~g-----~~v~~g~~dg~l~a~D~~tG-------------~~lw~~~~--~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          475 HVSPWNGGTLTTAG-----NVVFQGTADGRLVAYHAATG-------------EKLWEAPT--GTGVVAAPSTYMVDG  531 (677)
T ss_dssp             ESSSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC-------------CEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             CCCCCcCcceEeCC-----CEEEEECCCCcEEEEECCCC-------------ceeeeeeC--CCCcccCCEEEEeCC
Confidence            23344455566666     68888999999999999988             55555542  122222335566777

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.74  E-value=1.1e-06  Score=77.74  Aligned_cols=176  Identities=10%  Similarity=0.080  Sum_probs=111.7

Q ss_pred             EEEEcCCCCEEEeEeccCCCCce-------------------EEEEEEcCCceeeecccc--cc-------ccEEEEEEc
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAA-------------------EIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFS  112 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~  112 (298)
                      .++++|++.+++.+..     ++                   .|..+|..+|+.+-.++.  |.       ..+......
T Consensus       239 ~~~~d~~~~~vy~~~~-----~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~  313 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVG-----NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP  313 (689)
T ss_dssp             CEEEETTTTEEEEECC-----CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ceeEcCCCCEEEEeCC-----CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec
Confidence            6788898888888843     44                   499999999998866553  21       122222222


Q ss_pred             CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEeec----------------------------cCC--------
Q 037555          113 HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA----------------------------HKR--------  153 (298)
Q Consensus       113 ~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~--------  153 (298)
                      .+|+   .++.++.+|.++++|..+++.       +.....                            ...        
T Consensus       314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~-------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          314 IDGKPRKVLMQAPKNGFFYVIDRATGEL-------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCE-------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             cCCcEEEEEEEECCCCeEEEEECCCCCE-------eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            3554   788899999999999887432       211000                            000        


Q ss_pred             ---ceEEEEEccCCCEEEEeeC---------------------------------------------CCeEEEEEccCCc
Q 037555          154 ---IIWSCSWNPFGHEFATGSR---------------------------------------------DKTVKIWAVENKS  185 (298)
Q Consensus       154 ---~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~~wd~~~~~  185 (298)
                         .-..++++|+..++++...                                             +|.|+.||+.+++
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence               0112678888777776532                                             3779999999998


Q ss_pred             ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555          186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR  265 (298)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  265 (298)
                      .......    ..+.....+...+     .+++.|+.||.|+.||.+++             +.+..+..  ++...-.-
T Consensus       467 ~~W~~~~----~~~~~~g~~~tag-----glvf~gt~dg~l~a~D~~tG-------------~~lw~~~~--~~~~~~~p  522 (689)
T 1yiq_A          467 AAWEVPY----VTIFNGGTLSTAG-----NLVFEGSADGRVIAYAADTG-------------EKLWEQPA--ASGVMAAP  522 (689)
T ss_dssp             EEEEEEE----SSSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC-------------CEEEEEEC--SSCCCSCC
T ss_pred             eEeEccC----CCCccCccceECC-----CEEEEECCCCcEEEEECCCC-------------ccceeeeC--CCCcccCc
Confidence            7764322    2233334555555     68999999999999999998             55555432  11111223


Q ss_pred             EEeecCC
Q 037555          266 MAWKTHE  272 (298)
Q Consensus       266 ~~~~~~~  272 (298)
                      +.|..++
T Consensus       523 ~ty~~~G  529 (689)
T 1yiq_A          523 VTYSVDG  529 (689)
T ss_dssp             EEEEETT
T ss_pred             eEEEECC
Confidence            5667887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.71  E-value=2.3e-05  Score=60.65  Aligned_cols=185  Identities=6%  Similarity=-0.041  Sum_probs=109.3

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceee-----eccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCccce
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGEIDY  142 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~  142 (298)
                      ++|..+.      .+.|+.++++.....     ..+......+..++|++++..|+ +-..++.|..+++....      
T Consensus         2 ~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~------   69 (267)
T 1npe_A            2 THLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------   69 (267)
T ss_dssp             EEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------
T ss_pred             cEEEEEc------CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC------
Confidence            4555552      357888988754321     11222234578999999665554 44557899999986421      


Q ss_pred             eeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          143 QLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                       ..............+++++++..|+.+ ...+.|.++++..... ..+  ..........++++|++     ..|..+.
T Consensus        70 -~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~--~~~~~~~P~~i~vd~~~-----g~lyv~~  140 (267)
T 1npe_A           70 -PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL--FDTGLVNPRGIVTDPVR-----GNLYWTD  140 (267)
T ss_dssp             -CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSSCSSEEEEEEETTT-----TEEEEEE
T ss_pred             -cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEE--EECCCCCccEEEEeeCC-----CEEEEEE
Confidence             111222222457899999976655555 4567899999875432 211  11122456899999965     3444443


Q ss_pred             c---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          222 E---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       222 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .   .+.|..+++....              ...+..  ........+++++++.      .++++....+.|..+++
T Consensus       141 ~~~~~~~I~~~~~dg~~--------------~~~~~~--~~~~~P~gia~d~~~~------~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTN--------------RRILAQ--DNLGLPNGLTFDAFSS------QLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             CCSSSCEEEEEETTSCC--------------CEEEEC--TTCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred             CCCCCcEEEEEecCCCC--------------cEEEEE--CCCCCCcEEEEcCCCC------EEEEEECCCCEEEEEec
Confidence            3   3678777765321              111110  1224578899999762      55566666788888875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.63  E-value=1.5e-06  Score=73.77  Aligned_cols=164  Identities=10%  Similarity=0.096  Sum_probs=110.8

Q ss_pred             CceEEEEE-c-CCCCEEEeEeccC-------------CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555           57 NELFSLCC-D-HQGKLVASSCKAQ-------------STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        57 ~~v~~~~~-s-~~~~~l~~~~~~~-------------~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      ..+..+++ + |++.++++++...             ...++.+.+.|..+.+.+.++.-.. ....++++|+|+++++.
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            45788888 5 8999998885211             1346799999999998887766322 34668899999999888


Q ss_pred             eCCC---------------e-----------------------EEEEEeccCCCCccceee-eEEeeccCCceEEEEEcc
Q 037555          122 SRDR---------------Q-----------------------FSVFAIQRTGTGEIDYQL-IARQEAHKRIIWSCSWNP  162 (298)
Q Consensus       122 ~~dg---------------~-----------------------i~iwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~  162 (298)
                      +.+.               .                       |.+.|..+..     ... +..+. ......++.++|
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~-----~~~~~~~Ip-vg~~PhGv~~sP  286 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-----SSLFTRYIP-IANNPHGCNMAP  286 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG-----CCSSEEEEE-EESSCCCEEECT
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC-----CceeEEEEe-cCCCceEEEEcC
Confidence            8653               2                       4444443310     011 12222 123456799999


Q ss_pred             CCCEEEEee-CCCeEEEEEccCCcce---------eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          163 FGHEFATGS-RDKTVKIWAVENKSSV---------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       163 ~~~~l~~~~-~dg~i~~wd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ||+++++++ .+.+|.++|+.+.+..         ...... ........++|+|++     ...++...|+.|.+||+.
T Consensus       287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-----~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-----NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-----EEEEEETTTTEEEEEEHH
T ss_pred             CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-----eEEEEEecCCcEEEEEhh
Confidence            999877766 5789999999965310         011122 244568899999998     566677789999999997


Q ss_pred             e
Q 037555          233 V  233 (298)
Q Consensus       233 ~  233 (298)
                      .
T Consensus       361 ~  361 (595)
T 1fwx_A          361 D  361 (595)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=3.7e-06  Score=74.12  Aligned_cols=102  Identities=7%  Similarity=-0.021  Sum_probs=66.8

Q ss_pred             ceEEEEEEcCCceeeeccccccc--------------------------------cEEEEEEcCCCCEEEEEeCCC----
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSL--------------------------------TVTQIRFSHDDNLLLSVSRDR----  125 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg----  125 (298)
                      ++.|+.+|..+++.+-.+.....                                ....++++|++.+++.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            68999999999988755432111                                113567888888888877664    


Q ss_pred             ---------------eEEEEEeccCCCCccceeeeEEee--ccC-------CceEEEEEccCC---CEEEEeeCCCeEEE
Q 037555          126 ---------------QFSVFAIQRTGTGEIDYQLIARQE--AHK-------RIIWSCSWNPFG---HEFATGSRDKTVKI  178 (298)
Q Consensus       126 ---------------~i~iwd~~~~~~~~~~~~~~~~~~--~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~~  178 (298)
                                     .|..+|..++       +.+-.+.  .|.       ....-+....++   ..++.++.+|.|++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG-------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~  341 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTG-------KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV  341 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTC-------CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCC-------CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence                           4777887763       2222222  121       112223333466   67899999999999


Q ss_pred             EEccCCcceeee
Q 037555          179 WAVENKSSVKQI  190 (298)
Q Consensus       179 wd~~~~~~~~~~  190 (298)
                      +|.++++.+...
T Consensus       342 lD~~tG~~l~~~  353 (677)
T 1kb0_A          342 LDRTNGKFISAK  353 (677)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEeccc
Confidence            999999887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.58  E-value=1.3e-06  Score=69.75  Aligned_cols=188  Identities=6%  Similarity=-0.059  Sum_probs=114.7

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      +...+.++...+++.+++ +     ..++.|..+|.. ++....+......+.++...+++.+++..   +.|..+| ..
T Consensus       135 ~~~~~~~~~~~~~g~l~v-g-----t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~  203 (330)
T 3hxj_A          135 KKAIYATPIVSEDGTIYV-G-----SNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PD  203 (330)
T ss_dssp             SSCCCSCCEECTTSCEEE-E-----CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TT
T ss_pred             CCceeeeeEEcCCCEEEE-E-----cCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CC
Confidence            333455566666676444 4     236889999988 77665555445566777777777755544   7788888 43


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                             .............+.++...+++. +..++.++.|..+|. +++.....   ......+.++...+++     
T Consensus       204 -------g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g-----  266 (330)
T 3hxj_A          204 -------GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRF---KTGKRIESSPVIGNTD-----  266 (330)
T ss_dssp             -------SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEE---ECSSCCCSCCEECTTS-----
T ss_pred             -------CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEe---eCCCCccccceEcCCC-----
Confidence                   223333333445677788887765 555677788888875 34444322   2222333345554443     


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                       .|..++.+|.|..+|. ++             +....+.   .....+.++...+++        .|..++.+|.+++.
T Consensus       267 -~l~v~t~~ggl~~~d~-~g-------------~~~~~~~---~~~~~~~~~~~d~~g--------~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          267 -TIYFGSYDGHLYAINP-DG-------------TEKWNFE---TGSWIIATPVIDENG--------TIYFGTRNGKFYAL  320 (330)
T ss_dssp             -CEEEECTTCEEEEECT-TS-------------CEEEEEE---CSSCCCSCCEECTTC--------CEEEECTTSCEEEE
T ss_pred             -eEEEecCCCCEEEECC-CC-------------cEEEEEE---cCCccccceEEcCCC--------EEEEEcCCCeEEEE
Confidence             5777888888999985 33             2222222   123456666776776        46668889999887


Q ss_pred             Ee
Q 037555          295 QV  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       321 ~~  322 (330)
T 3hxj_A          321 FN  322 (330)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.56  E-value=5.5e-06  Score=73.18  Aligned_cols=101  Identities=6%  Similarity=0.010  Sum_probs=66.3

Q ss_pred             CceEEEEEEcCCceeeeccccc-------------------------------cccEEEEEEcCCCCEEEEEeCCCe---
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSH-------------------------------SLTVTQIRFSHDDNLLLSVSRDRQ---  126 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~---  126 (298)
                      .++.|+.||..+|+.+-.+...                               ...-..++++|+..+++.++.++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            3789999999999877554310                               001125778888888888887764   


Q ss_pred             ----------------EEEEEeccCCCCccceeeeEEeec--cC-------CceEEEEEccCCC---EEEEeeCCCeEEE
Q 037555          127 ----------------FSVFAIQRTGTGEIDYQLIARQEA--HK-------RIIWSCSWNPFGH---EFATGSRDKTVKI  178 (298)
Q Consensus       127 ----------------i~iwd~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~  178 (298)
                                      |..+|..+++       .+-.+..  |.       .+........++.   .++.++.+|.+++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~-------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~  333 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGE-------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV  333 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCC-------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCc-------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence                            8889988743       3322221  21       1222222223454   7889999999999


Q ss_pred             EEccCCccee
Q 037555          179 WAVENKSSVK  188 (298)
Q Consensus       179 wd~~~~~~~~  188 (298)
                      +|.++++.+.
T Consensus       334 lD~~tG~~l~  343 (689)
T 1yiq_A          334 IDRATGELLS  343 (689)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCCEec
Confidence            9999998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.55  E-value=6.1e-05  Score=60.07  Aligned_cols=194  Identities=5%  Similarity=-0.024  Sum_probs=112.7

Q ss_pred             ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----c-ccccEEEEEEcC-CCCEEEEEeC-------
Q 037555           58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----S-HSLTVTQIRFSH-DDNLLLSVSR-------  123 (298)
Q Consensus        58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~l~~~~~-------  123 (298)
                      .+..+++.+ ++.++++..      .+.|..+|..+++. ..+.    + .......+++.+ +|++.++-..       
T Consensus        81 ~p~gi~~~~~~g~l~v~d~------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDC------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             CEEEEEEETTTTEEEEEET------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred             CCceEEEcCCCCcEEEEEC------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence            578999997 665555432      33488888775532 2221    1 113468899999 9987776432       


Q ss_pred             ----------CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcc--eeee
Q 037555          124 ----------DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSS--VKQI  190 (298)
Q Consensus       124 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~--~~~~  190 (298)
                                ++.|..+|....       .. ..+...-.....++++|+++.|+++ +..+.|.+|++.....  ...+
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~-------~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTK-------ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTT-------EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred             cceehcccCCCceEEEEeCCCC-------EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence                      366777776542       11 1111112334679999999876665 4568999999875321  1111


Q ss_pred             eecCCCCCceEEEEEeeccccCCccEEEEeec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-
Q 037555          191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-  259 (298)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  259 (298)
                      ..+   .. ...+++.+++     .+.++...          .+.|..+|.. +             +.+..+....+. 
T Consensus       226 ~~~---~g-P~gi~~d~~G-----~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-------------~~~~~~~~~~g~~  282 (322)
T 2fp8_A          226 VKI---PN-PGNIKRNADG-----HFWVSSSEELDGNMHGRVDPKGIKFDEF-G-------------NILEVIPLPPPFA  282 (322)
T ss_dssp             EEC---SS-EEEEEECTTS-----CEEEEEEEETTSSTTSCEEEEEEEECTT-S-------------CEEEEEECCTTTT
T ss_pred             EeC---CC-CCCeEECCCC-----CEEEEecCcccccccCCCccEEEEECCC-C-------------CEEEEEECCCCCc
Confidence            122   23 6788888887     55555433          3556666643 2             333333321111 


Q ss_pred             cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          260 VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       260 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ...+..+++ .++       .++++....+.|..+++.
T Consensus       283 ~~~~~~~~~-~~g-------~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          283 GEHFEQIQE-HDG-------LLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSCCCEEEE-ETT-------EEEEECSSCSEEEEEEC-
T ss_pred             cccceEEEE-eCC-------EEEEeecCCCceEEEecc
Confidence            234566666 455       677777778889888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.54  E-value=1.2e-08  Score=83.37  Aligned_cols=139  Identities=11%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec
Q 037555          114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL  193 (298)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  193 (298)
                      ++..+++++.||.|+.||..++       +.+-.+..  ..+.+..+..++..+++++.||.|+.||.++++.+.   ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG-------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w---~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG-------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT---KL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC-------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE---EC
T ss_pred             eCCEEEEEcCCCEEEEEECCCC-------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee---ee
Confidence            5778999999999999998873       34433333  344444455667778888899999999998887654   22


Q ss_pred             CCCC-CceE-EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          194 PPFN-SSVT-ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       194 ~~~~-~~v~-~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                      ..+. ..+. +..+. .+     ..+++++.++.|+.||..+++             ....+.   .+.    ...++|+
T Consensus        76 ~~~~~~~~~~sp~~~-~~-----~~v~~g~~dg~v~a~D~~tG~-------------~~w~~~---~~~----~~~~~p~  129 (369)
T 2hz6_A           76 PFTIPELVQASPCRS-SD-----GILYMGKKQDIWYVIDLLTGE-------------KQQTLS---SAF----ADSLSPS  129 (369)
T ss_dssp             SCCHHHHHTTCSCC-----------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred             eccCccccccCceEe-cC-----CEEEEEeCCCEEEEEECCCCc-------------EEEEec---CCC----ccccccc
Confidence            2111 1110 00111 12     467888889999999999873             332222   121    1334566


Q ss_pred             CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          272 EKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +       ..+++++.|+.|+.||.+
T Consensus       130 ~-------~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A          130 T-------SLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             ----------EEEEEEEEEEECCCSS
T ss_pred             C-------CEEEEEecCCEEEEEECC
Confidence            6       688888889999998863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.53  E-value=4.1e-06  Score=64.40  Aligned_cols=148  Identities=8%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +..|..+.    ..++.+.++|..+.+.+.++......  ...+++|++.++++..++.|.++|..+       .+....
T Consensus        75 g~~lyv~t----~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t-------~~v~~~  141 (266)
T 2iwa_A           75 NEKLYQVV----WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHT-------FKLIKK  141 (266)
T ss_dssp             TTEEEEEE----TTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTT-------CCEEEE
T ss_pred             CCEEEEEE----ecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCC-------CcEEEE
Confidence            55666654    35889999999999988887532111  233556788777777789999999876       333444


Q ss_pred             eecc-----CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-----------CCCceEEEEEeecccc
Q 037555          148 QEAH-----KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-----------FNSSVTALSWVGLDRQ  211 (298)
Q Consensus       148 ~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~  211 (298)
                      +.-.     -..++.+.|. ++..++....++.|.+.|..+++....+. +.+           .......++|+|++. 
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-  218 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENK-  218 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTT-
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCC-
Confidence            3321     1236678888 66555555567899999999998877553 211           113568999999874 


Q ss_pred             CCccEEEEeecCCcEEEEEeeec
Q 037555          212 KNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                         .+++++...+.|.+.++...
T Consensus       219 ---~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          219 ---RIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ---EEEEEETTCSEEEEEEEEEC
T ss_pred             ---EEEEECCCCCeEEEEEEecc
Confidence               67777778899999999865

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.52  E-value=0.00017  Score=59.04  Aligned_cols=160  Identities=10%  Similarity=-0.035  Sum_probs=97.8

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  134 (298)
                      ...+..++|++.+..|..+.    ...+.|..+++........+.........+++.+.+ +++++-...+.|.+.++..
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             CCccEEEEEecCCCeEEEEe----CCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            34578899998666666553    346789999987654333333222345678888754 4455555677888877653


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      ..       ........-.....++++|.+..|+.... . +.|..+++.......   .....-.....|+++|.+.  
T Consensus       191 ~~-------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGlavd~~~~--  258 (386)
T 3v65_B          191 AH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGR--  258 (386)
T ss_dssp             CS-------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSCEEEEEEEGGGT--
T ss_pred             Cc-------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCeeeEEEeCCCC--
Confidence            21       11112222345688999997766666553 3 678888886543322   1122234578999998762  


Q ss_pred             CccEEEEeecCCcEEEEEeee
Q 037555          213 NHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~  233 (298)
                        .+.++-...+.|..+++..
T Consensus       259 --~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          259 --RMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             --EEEEEETTTTEEEEECTTS
T ss_pred             --EEEEEECCCCEEEEEeCCC
Confidence              4445545567888888754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=3.8e-05  Score=61.26  Aligned_cols=156  Identities=12%  Similarity=0.049  Sum_probs=94.8

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------------------cccccEEEEEEcC-CC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------------------SHSLTVTQIRFSH-DD  115 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~  115 (298)
                      ....+++|+++++++.++     ..++.|..|+..+++.. .+.                    .....+..+++.+ ++
T Consensus        19 ~~p~~i~~d~~g~~l~v~-----~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTS-----VQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             SCCCCEECCTTCSSEEEE-----CTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             CCceEEEEcCCCCEEEEE-----cCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            456788899999877777     34788999988754332 111                    0123578899997 55


Q ss_pred             CEEEEEeCCCeEEEEEeccCCCCccceeeeEE-ee-ccCCceEEEEEcc-CCCEEEEeeC-----------------CCe
Q 037555          116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR-QE-AHKRIIWSCSWNP-FGHEFATGSR-----------------DKT  175 (298)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~  175 (298)
                      + |+.+...+.|..+|.....     ...+.. .. ........+++.+ +++.+++-..                 ++.
T Consensus        93 ~-l~v~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           93 Q-LYIVDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             E-EEEEETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             c-EEEEECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence            4 5555445557777755311     111111 11 1113467899999 8876665432                 367


Q ss_pred             EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555          176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MESGVIELWSISV  233 (298)
Q Consensus       176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~  233 (298)
                      |..+|..+++.......    ......++++|++     .+|..+ ...+.|.+|++..
T Consensus       167 v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg-----~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          167 LIKYDPSTKETTLLLKE----LHVPGGAEVSADS-----SFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEETTTTEEEEEEEE----ESCCCEEEECTTS-----SEEEEEEGGGTEEEEEESSS
T ss_pred             EEEEeCCCCEEEEeccC----CccCcceEECCCC-----CEEEEEeCCCCeEEEEECCC
Confidence            88888766543221111    1334679999987     555444 5568899999874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.45  E-value=0.00035  Score=56.36  Aligned_cols=160  Identities=11%  Similarity=-0.025  Sum_probs=99.0

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ...+..++|++....|..+.    ...+.|..+++........+.........+++.+. ++++++-...+.|.+.++..
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEeccccEEEEEe----ccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            34578999998766666553    34678999998765433323222234567888874 44555556678899988764


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CC-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RD-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      ..       ........-.....++++|.+..|+... .. +.|...++.......   .....-.....++++|.+.  
T Consensus       148 ~~-------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGla~d~~~~--  215 (349)
T 3v64_C          148 AH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGR--  215 (349)
T ss_dssp             CS-------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEEEEEETTTT--
T ss_pred             Cc-------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcceEEEeCCCC--
Confidence            21       1111222234568899999666665554 34 778888887543222   1122234578999998662  


Q ss_pred             CccEEEEeecCCcEEEEEeee
Q 037555          213 NHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~  233 (298)
                        .+.++-...+.|..+++..
T Consensus       216 --~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          216 --RMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             --EEEEEETTTTEEEEEETTS
T ss_pred             --EEEEEECCCCEEEEEeCCC
Confidence              4444545567898888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.43  E-value=6.4e-06  Score=65.76  Aligned_cols=136  Identities=11%  Similarity=-0.013  Sum_probs=87.1

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +..|..+     ..++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.. +.       ....
T Consensus       107 ~~~l~v~-----t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-------~~~~  171 (330)
T 3hxj_A          107 EDILYVT-----SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-------EKWR  171 (330)
T ss_dssp             TTEEEEE-----CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------EEEE
T ss_pred             CCEEEEE-----ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------EeEE
Confidence            4455666     347889999988 666555554445556667776776 5557778899999876 22       2222


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      .......+.++...+++..++. +  +.|..+| .+++...   ........+.++...+++      .|..++.++.|.
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g------~l~v~t~~~gl~  238 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKW---NFYAGYWTVTRPAISEDG------TIYVTSLDGHLY  238 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEE---EECCSSCCCSCCEECTTS------CEEEEETTTEEE
T ss_pred             EecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEE---EEccCCcceeceEECCCC------eEEEEcCCCeEE
Confidence            2333445666777777765544 4  7799999 6655544   333334567778887765      466677778888


Q ss_pred             EEEe
Q 037555          228 LWSI  231 (298)
Q Consensus       228 vwd~  231 (298)
                      .++.
T Consensus       239 ~~~~  242 (330)
T 3hxj_A          239 AINP  242 (330)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=4.3e-06  Score=67.82  Aligned_cols=127  Identities=12%  Similarity=-0.009  Sum_probs=92.2

Q ss_pred             EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEEeecc--
Q 037555           84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIARQEAH--  151 (298)
Q Consensus        84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--  151 (298)
                      .|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||..+       .+.+..+...  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------FLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------CCEEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------CCEEEEEECCCc
Confidence            8999999999999988755555  799999999888886          478999999988       5556665432  


Q ss_pred             -----CCceEEEEEccCCCEEEEeeC--CCeEEE--EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          152 -----KRIIWSCSWNPFGHEFATGSR--DKTVKI--WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       152 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                           ......+.++|++++++++..  +..|.+  +|..+   ...+ ...   ..   +.+.|++.    ..+++.+.
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i-~v~---~~---~~~~p~g~----~~~~~~~~  183 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLT-KSA---SC---FHIHPGAA----ATHYLGSC  183 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEE-ECS---SC---CCCEEEET----TEEECCCC
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEE-ECC---Cc---eEEccCCC----eEEEEEcC
Confidence                 123467999999999998874  467888  89877   3322 111   11   22445553    45667778


Q ss_pred             CCcEEEEEeee
Q 037555          223 SGVIELWSISV  233 (298)
Q Consensus       223 dg~i~vwd~~~  233 (298)
                      |+.+.+.++.+
T Consensus       184 dg~~~~vd~~~  194 (368)
T 1mda_H          184 PASLAASDLAA  194 (368)
T ss_dssp             TTSCEEEECCS
T ss_pred             CCCEEEEECcc
Confidence            89988888876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.41  E-value=0.00039  Score=55.26  Aligned_cols=160  Identities=8%  Similarity=-0.092  Sum_probs=96.4

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVF  130 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw  130 (298)
                      ...+..++|++.+..|..+.    ...+.|..+++..    ......+...-.....+++.+.+ +++++-...+.|.++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D----~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEE----TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEE----CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence            34578999998766666553    3468999999875    22222222222345788888644 455555668899999


Q ss_pred             EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC--CeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      ++....       ..............++++|.+..|+.+...  +.|...++.... ...+  ....-.....++++++
T Consensus       105 ~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~--~~~~~~~P~gla~d~~  174 (316)
T 1ijq_A          105 DTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL--VTENIQWPNGITLDLL  174 (316)
T ss_dssp             ETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE--ECSSCSCEEEEEEETT
T ss_pred             eCCCCc-------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE--EECCCCCceEEEEecc
Confidence            876321       111122223456899999976666655543  688888876433 2211  1112345789999987


Q ss_pred             cccCCccEEEEeecCCcEEEEEeee
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +.    .+.++-...+.|..+|+..
T Consensus       175 ~~----~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          175 SG----RLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             TT----EEEEEETTTTEEEEEETTS
T ss_pred             CC----EEEEEECCCCeEEEEecCC
Confidence            62    4444545567899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.40  E-value=0.00023  Score=57.49  Aligned_cols=196  Identities=8%  Similarity=-0.064  Sum_probs=112.9

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRT  135 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~  135 (298)
                      +..+|.+..++. +|+.+.      ...|+..++........+.. ...+..++|++.+..|. +-...+.|..+++...
T Consensus        34 d~~~C~~~~~~~-~ll~~~------~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN------RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC------BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCcccccccCc-eeEeec------ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            445566666644 444442      45688888875544333333 34478999998655555 4445788888887642


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                      .       ..............+++.+.+..|+ +-...+.|.+.++.......   .+...-.....+++.|.+.    
T Consensus       106 ~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g----  171 (349)
T 3v64_C          106 N-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEG----  171 (349)
T ss_dssp             S-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTT----
T ss_pred             C-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcC----
Confidence            2       1111222223456788987555554 44556889999987544322   1222335578999998652    


Q ss_pred             cEEEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          215 GFLAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       215 ~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                      .++++-... +.|..+++....             . ..+  ....-...+.|+++|++.      .++++-...+.|..
T Consensus       172 ~ly~td~~~~~~I~r~~~dG~~-------------~-~~~--~~~~~~~PnGla~d~~~~------~lY~aD~~~~~I~~  229 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDGSG-------------R-RII--ADTHLFWPNGLTIDYAGR------RMYWVDAKHHVIER  229 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS-------------C-EES--CCSSCSCEEEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             eEEEeccCCCCEEEEEeCCCCC-------------c-EEE--EECCCCCcceEEEeCCCC------EEEEEECCCCEEEE
Confidence            444444444 678777765431             1 111  111234567899998652      45555555667777


Q ss_pred             eEe
Q 037555          294 FQV  296 (298)
Q Consensus       294 w~~  296 (298)
                      +++
T Consensus       230 ~~~  232 (349)
T 3v64_C          230 ANL  232 (349)
T ss_dssp             EET
T ss_pred             EeC
Confidence            664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.37  E-value=0.00066  Score=55.87  Aligned_cols=162  Identities=7%  Similarity=-0.101  Sum_probs=99.5

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFS  128 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  128 (298)
                      .....+..++|++.+..|..+.    ...+.|+.+++...    .....+.........+++.+ .++++++-...+.|.
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD----~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~  184 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  184 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEE----TTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccCcceEEeeeeccCceEEEe----cCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEE
Confidence            3445788999998766666653    34678999988642    12222232334567899987 455555656678888


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      +.+++...       ....+...-.....|++.|.+.+|+....  .+.|...++.......   .....-.....|+++
T Consensus       185 ~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~~~l~~P~glavd  254 (400)
T 3p5b_L          185 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLD  254 (400)
T ss_dssp             EECTTTCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EECSSCSCEEEEEEE
T ss_pred             EEeCCCCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEECCCCceEEEEEE
Confidence            88876421       11222223345689999997766666553  3678888887544322   112223567899999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeee
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +.+.    .+.++-...+.|..+|+..
T Consensus       255 ~~~~----~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          255 LLSG----RLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             TTTT----EEEEEETTTTEEEEEETTS
T ss_pred             eCCC----EEEEEECCCCEEEEEeCCC
Confidence            8762    3444444567888888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.35  E-value=6.7e-05  Score=61.15  Aligned_cols=178  Identities=8%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeeccccccc-------cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL-------TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      ..++.+     ..++.|..+|..+++.+........       .+..+.-.|  .+..++.++.++.+..+|..++    
T Consensus       189 ~~v~~g-----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG----  259 (376)
T 3q7m_A          189 GAAVVG-----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG----  259 (376)
T ss_dssp             TEEEEC-----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC----
T ss_pred             CEEEEE-----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC----
Confidence            345555     3478999999998887655432110       000011112  3457777888999999998763    


Q ss_pred             cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV  219 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  219 (298)
                         +.+-...  ......+..  ++..++.++.++.|..+|.++++........  ....+......  +     ..|+.
T Consensus       260 ---~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~--~-----~~l~v  323 (376)
T 3q7m_A          260 ---QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVLY--N-----GNLVV  323 (376)
T ss_dssp             ---CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEEE--T-----TEEEE
T ss_pred             ---cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEEE--C-----CEEEE
Confidence               2232222  122333333  4678888888999999999998876532211  11222223332  2     47888


Q ss_pred             eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          220 GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       220 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ++.+|.|+++|..++             +.......   ....+.+.....+        ..|+.++.+|.|..|+
T Consensus       324 ~~~~g~l~~~d~~tG-------------~~~~~~~~---~~~~~~~~~~~~~--------~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          324 GDSEGYLHWINVEDG-------------RFVAQQKV---DSSGFQTEPVAAD--------GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECTTSEEEEEETTTC-------------CEEEEEEC---CTTCBCSCCEEET--------TEEEEEBTTSCEEEEE
T ss_pred             EeCCCeEEEEECCCC-------------cEEEEEec---CCCcceeCCEEEC--------CEEEEEeCCCEEEEEe
Confidence            889999999999877             33333221   1112211111123        4677788899999887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.30  E-value=0.0007  Score=53.47  Aligned_cols=206  Identities=8%  Similarity=-0.008  Sum_probs=111.8

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--e
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--Q  126 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~  126 (298)
                      +..+... .....++|+++++++++-     ..++.|..||... +....+. .......+++.++++++++.....  .
T Consensus        25 ~~~~p~~-~~pegia~~~~g~lyv~d-----~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           25 ITSFPVN-TFLENLASAPDGTIFVTN-----HEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEECTT-CCEEEEEECTTSCEEEEE-----TTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             eEeCCCC-CCcceEEECCCCCEEEEe-----CCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            4444322 467899999999866665     3478899999874 3333232 234688999999999766554332  4


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-eeeee------ecCCCCCc
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VKQIL------ALPPFNSS  199 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~------~~~~~~~~  199 (298)
                      |..++...+.     ...+... ........++..+.+..+++-..++.|..+|...+.. +....      .....-..
T Consensus        97 v~~~d~~~g~-----~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           97 VVSLVKSDGT-----VETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEECTTSC-----EEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEcCCCCe-----EEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            5556654422     1111111 1122234455555554444444588899998765321 11000      00011123


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT  279 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  279 (298)
                      ...+  +|++.    .++++-...+.|..|++......          .....+...    .....|++++++       
T Consensus       171 pngi--s~dg~----~lyv~d~~~~~I~~~~~~~~g~~----------~~~~~~~~~----~~P~gi~vd~dG-------  223 (306)
T 2p4o_A          171 ANGL--KRFGN----FLYVSNTEKMLLLRIPVDSTDKP----------GEPEIFVEQ----TNIDDFAFDVEG-------  223 (306)
T ss_dssp             EEEE--EEETT----EEEEEETTTTEEEEEEBCTTSCB----------CCCEEEEES----CCCSSEEEBTTC-------
T ss_pred             CCCc--CcCCC----EEEEEeCCCCEEEEEEeCCCCCC----------CccEEEecc----CCCCCeEECCCC-------
Confidence            4455  77762    34455556788999998641000          001111111    234567788877       


Q ss_pred             eEEEeeeCCCcEEEeE
Q 037555          280 MQLASCGADNTVRVFQ  295 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~  295 (298)
                      +++++....+.|.+++
T Consensus       224 ~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          224 NLYGATHIYNSVVRIA  239 (306)
T ss_dssp             CEEEECBTTCCEEEEC
T ss_pred             CEEEEeCCCCeEEEEC
Confidence            6666666666777765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.30  E-value=7.5e-05  Score=60.86  Aligned_cols=146  Identities=8%  Similarity=-0.046  Sum_probs=86.2

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccc---------cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH---------SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG  138 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (298)
                      +..++++     ..++.|..+|..+++.+-.+...         ...+.+.. ..++..++.++.++.|..+|..++   
T Consensus        53 ~~~v~~~-----~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG---  123 (376)
T 3q7m_A           53 DNVVYAA-----DRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDG---  123 (376)
T ss_dssp             TTEEEEE-----CTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTC---
T ss_pred             CCEEEEE-----cCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCC---
Confidence            4566666     34789999999999877554431         12222211 124567888888999999998873   


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC--CceEEEEEeeccccCCccE
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN--SSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~  216 (298)
                          +..-..............  .+..+++++.++.|..+|.++++............  .........  +     ..
T Consensus       124 ----~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-----~~  190 (376)
T 3q7m_A          124 ----TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-----GA  190 (376)
T ss_dssp             ----CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-----TE
T ss_pred             ----CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-----CE
Confidence                223222222111111122  24578888889999999999988766332111000  000111222  2     46


Q ss_pred             EEEeecCCcEEEEEeeecc
Q 037555          217 LAVGMESGVIELWSISVNR  235 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~  235 (298)
                      ++.+..++.|..+|..+++
T Consensus       191 v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          191 AVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             EEECCTTTEEEEEETTTCC
T ss_pred             EEEEcCCCEEEEEECCCCc
Confidence            7788888999999987663

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.30  E-value=0.00029  Score=57.74  Aligned_cols=194  Identities=8%  Similarity=-0.060  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCC
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~  137 (298)
                      -.|.+..+. .+|+.+.      ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...  
T Consensus        79 ~~C~~~~~~-~~l~~~~------~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~--  148 (386)
T 3v65_B           79 RSCKALGPE-PVLLFAN------RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS--  148 (386)
T ss_dssp             SCEEECSSC-CEEEEEC------BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--
T ss_pred             CeECCcccc-ceeEeec------CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC--
Confidence            345555553 3444442      4568888887655433333 234578999998555544 4456788888887642  


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                           ...............+++.+.+..|+. -...+.|.+.++.......   .+.........+++.|.+.    .+
T Consensus       149 -----~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g----~l  216 (386)
T 3v65_B          149 -----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEG----TI  216 (386)
T ss_dssp             -----CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTT----EE
T ss_pred             -----CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCC----eE
Confidence                 111222222234467888875555544 4456788888887543222   1222335678999998762    34


Q ss_pred             EEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          217 LAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       217 l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      +++-... +.|..+++...             .....+.   ..-...+.|+|+|++.      .++++-+..+.|..++
T Consensus       217 y~td~~~~~~I~r~~~dG~-------------~~~~~~~---~~~~~PnGlavd~~~~------~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          217 YWTDWGNTPRIEASSMDGS-------------GRRIIAD---THLFWPNGLTIDYAGR------RMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEEECSSSCEEEEEETTSC-------------SCEEEEC---SSCSCEEEEEEEGGGT------EEEEEETTTTEEEEEC
T ss_pred             EEeccCCCCEEEEEeCCCC-------------CcEEEEE---CCCCCeeeEEEeCCCC------EEEEEECCCCEEEEEe
Confidence            4444344 67777776533             1111111   1233567899997652      5555555566777766


Q ss_pred             e
Q 037555          296 V  296 (298)
Q Consensus       296 ~  296 (298)
                      +
T Consensus       275 ~  275 (386)
T 3v65_B          275 L  275 (386)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.28  E-value=4.7e-05  Score=57.96  Aligned_cols=135  Identities=10%  Similarity=0.116  Sum_probs=88.5

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ++..|....    ..++.+.+||..+.+.+.++...... ..+  ++++..|+.+..++.|.++|..+       .+...
T Consensus        95 ~g~~ly~lt----w~~~~v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T-------~~v~~  160 (262)
T 3nol_A           95 WKDKIVGLT----WKNGLGFVWNIRNLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPES-------LTPVR  160 (262)
T ss_dssp             ETTEEEEEE----SSSSEEEEEETTTCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTT-------CSEEE
T ss_pred             eCCEEEEEE----eeCCEEEEEECccCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCC-------CeEEE
Confidence            345555554    35889999999999998888742221 233  35777777776688899999887       33344


Q ss_pred             Eeecc--C---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeecccc
Q 037555          147 RQEAH--K---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGLDRQ  211 (298)
Q Consensus       147 ~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~  211 (298)
                      .+.-.  .   ..++.+.|. ++..++..-.++.|.+.|.++++....+. +.+          .....+.++|+|... 
T Consensus       161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id-~~~L~~~~~~~~~~~~vlNGIA~dp~~~-  237 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIID-LNGILAEAGPLPSPIDVLNGIAWDKEHH-  237 (262)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEE-CTTGGGGSCSCCSSCCCEEEEEEETTTT-
T ss_pred             EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEE-CCcCccccccccCcCCceEEEEEcCCCC-
Confidence            33321  1   334567776 67655555568899999999998877553 211          123568999999873 


Q ss_pred             CCccEEEEee
Q 037555          212 KNHGFLAVGM  221 (298)
Q Consensus       212 ~~~~~l~~g~  221 (298)
                         .++++|-
T Consensus       238 ---~lfVTGK  244 (262)
T 3nol_A          238 ---RLFVTGK  244 (262)
T ss_dssp             ---EEEEEET
T ss_pred             ---EEEEECC
Confidence               4555553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.27  E-value=0.00051  Score=54.89  Aligned_cols=197  Identities=11%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +...+..+.+.+++..++.+.      ++.|.. ..+.++.-.. .......+..+.+.+++.+++.+...+..+-.|-.
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~~------~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g  192 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMITN------VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG  192 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEET------TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred             CCCCeEEEEEECCCCEEEEeC------CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence            345678888877777776662      343322 1222322211 12345578899999988877666544333333310


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC--CCCCceEEEEEeecccc
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP--PFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  211 (298)
                       +..    +..+.  ......+..+.+.+++..+ .++.+|.+++.+...++....+ ...  .....+.++++.+.+  
T Consensus       193 -G~t----W~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~-~~~~~~~~~~~~~v~~~~~~--  261 (327)
T 2xbg_A          193 -QTA----WEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGEL-LSPLRRNSVGFLDLAYRTPN--  261 (327)
T ss_dssp             -CSS----CEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCC-BCTTSSCCSCEEEEEESSSS--
T ss_pred             -CCc----eeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEec-cCCcccCCcceEEEEecCCC--
Confidence             110    33332  2345678889998887655 4556788777643323322211 111  122357888888765  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .+++++ .++.| ++....+             .....+.........+.++.|.+++        .++.++.+|.|
T Consensus       262 ---~~~~~g-~~g~i-~~S~DgG-------------~tW~~~~~~~~~~~~~~~v~~~~~~--------~~~~~G~~G~i  315 (327)
T 2xbg_A          262 ---EVWLAG-GAGAL-LCSQDGG-------------QTWQQDVDVKKVPSNFYKILFFSPD--------QGFILGQKGIL  315 (327)
T ss_dssp             ---CEEEEE-STTCE-EEESSTT-------------SSCEECGGGTTSSSCCCEEEEEETT--------EEEEECSTTEE
T ss_pred             ---EEEEEe-CCCeE-EEeCCCC-------------cccEEcCccCCCCCCeEEEEEECCC--------ceEEEcCCceE
Confidence               555554 46666 3333333             1112221111123557788887655        46677778877


Q ss_pred             EEeE
Q 037555          292 RVFQ  295 (298)
Q Consensus       292 ~iw~  295 (298)
                      .-++
T Consensus       316 ~~~~  319 (327)
T 2xbg_A          316 LRYV  319 (327)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.25  E-value=0.00055  Score=51.62  Aligned_cols=135  Identities=10%  Similarity=0.063  Sum_probs=88.6

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +..|....    ..++.+.+||..+.+.+.++...... ..++  +++..|+.+..++.|.++|..+       .+.+..
T Consensus        74 ~~~ly~lt----w~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t-------~~~~~~  139 (243)
T 3mbr_X           74 RDRLIQLT----WRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDT-------LQQVGS  139 (243)
T ss_dssp             TTEEEEEE----SSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTT-------CCEEEE
T ss_pred             CCEEEEEE----eeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCC-------CeEEEE
Confidence            44555543    35889999999999999888743222 3444  4677777777789999999887       344444


Q ss_pred             eecc--C---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----------CCCCCceEEEEEeeccccC
Q 037555          148 QEAH--K---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----------PPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       148 ~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~  212 (298)
                      +.-.  .   ..++.+.|. ++..++..-.+..|.+.|.++++....+..-          .......+.|+++|.+.  
T Consensus       140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--  216 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--  216 (243)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--
T ss_pred             EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--
Confidence            3321  1   345667766 5665555556789999999998877654311          01223568999999873  


Q ss_pred             CccEEEEee
Q 037555          213 NHGFLAVGM  221 (298)
Q Consensus       213 ~~~~l~~g~  221 (298)
                        .++++|-
T Consensus       217 --~lfVTGK  223 (243)
T 3mbr_X          217 --RLFVTGK  223 (243)
T ss_dssp             --EEEEEET
T ss_pred             --EEEEECC
Confidence              5666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.20  E-value=0.00099  Score=53.01  Aligned_cols=186  Identities=12%  Similarity=0.165  Sum_probs=108.1

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCC----CC---EEEEEeC---CCeEEEEEeccCCCCccceeeeEEee--
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD----DN---LLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQE--  149 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~--  149 (298)
                      .+-+.+||+ +++.++.+..  +.++.+..-|+    |+   ++++...   +++|.+|++.....      .+..+.  
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~------~l~~i~~~  119 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG------TLQSMTDP  119 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC------CEEECSCT
T ss_pred             CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC------ceeecccc
Confidence            568999999 6888887763  45666666552    22   2333333   57899998853211      122221  


Q ss_pred             -----ccCCceEEEEE--ccC-CC-EEEEeeCCCeEEEEEccC---C-cceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555          150 -----AHKRIIWSCSW--NPF-GH-EFATGSRDKTVKIWAVEN---K-SSVKQILALPPFNSSVTALSWVGLDRQKNHGF  216 (298)
Q Consensus       150 -----~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~wd~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (298)
                           .....+..+++  +|. +. ++++...+|.+..|++..   + .....+..+. ..+.+..+...+..     ..
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~-----g~  193 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEY-----GR  193 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTT-----TE
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCC-----Ce
Confidence                 11145667777  664 43 677778889999999843   2 1112223444 45678888888876     68


Q ss_pred             EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee--cCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK--THEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      |+.+-++.-|..|+.+......        ...+..+. ...-...+..|+.-  ++++     +.+|+++-.+++..+|
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~-~g~l~aDvEGLai~~~~~g~-----gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSN--------GTVIDRAD-GRHLTRDIEGLTIYYAADGK-----GYLMASSQGNSSYAIY  259 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSC--------CEEEEEBS-SSSBCSCEEEEEEEECGGGC-----EEEEEEEGGGTEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCC--------ceEEEEec-CCccccCcceEEEEecCCCC-----EEEEEEcCCCCEEEEE
Confidence            9999888655555533221000        02333322 12223467888874  4431     1345555467789999


Q ss_pred             Ee
Q 037555          295 QV  296 (298)
Q Consensus       295 ~~  296 (298)
                      |.
T Consensus       260 dr  261 (355)
T 3amr_A          260 DR  261 (355)
T ss_dssp             ES
T ss_pred             EC
Confidence            86

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.20  E-value=0.00089  Score=55.69  Aligned_cols=156  Identities=7%  Similarity=0.047  Sum_probs=92.6

Q ss_pred             ceEEEEEcCC--CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---Ce-EEEEE
Q 037555           58 ELFSLCCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQ-FSVFA  131 (298)
Q Consensus        58 ~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~-i~iwd  131 (298)
                      ....++|+|+  ...|..+..     .+.|+.++..+++...... .......++++++++++++....   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~-----~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ-----RDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB-----TSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeC-----CCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence            4678999984  455666622     2789999997776554333 44557899999999954444321   12 22233


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ....      ......+. .-.....++++| ++.++++-..++.|+.+|..++.....+.... .......++|+|++ 
T Consensus       214 ~~~~------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG-  284 (433)
T 4hw6_A          214 RASG------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTG-  284 (433)
T ss_dssp             GGGT------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTS-
T ss_pred             CCCC------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCC-
Confidence            2211      10001111 223346788999 66655555567889999988665422222222 12233579999998 


Q ss_pred             cCCcc-EEEEeecCCcEEEEEee
Q 037555          211 QKNHG-FLAVGMESGVIELWSIS  232 (298)
Q Consensus       211 ~~~~~-~l~~g~~dg~i~vwd~~  232 (298)
                          . ++++-...+.|+.+++.
T Consensus       285 ----~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          285 ----DWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             ----SEEEEEETTTTEEEEEEBC
T ss_pred             ----CEEEEEeCCCCEEEEEeCC
Confidence                5 44555566789988865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.19  E-value=0.00017  Score=54.98  Aligned_cols=136  Identities=9%  Similarity=-0.004  Sum_probs=90.0

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA  146 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (298)
                      ++..|....    ..++.+.+||..+.+.+.++..... -..++  ++++.|+.+..++.|.++|..+       .+.+.
T Consensus       104 ~g~~Ly~lt----w~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T-------~~v~~  169 (268)
T 3nok_A          104 DGERLYQLT----WTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDG-------FALVG  169 (268)
T ss_dssp             CSSCEEEEE----SSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTT-------CCEEE
T ss_pred             eCCEEEEEE----ccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCC-------CeEEE
Confidence            344444443    3589999999999999988874222 23444  5678888777789999999887       33444


Q ss_pred             Eeec--cC---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----------CCCCCceEEEEEeecccc
Q 037555          147 RQEA--HK---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----------PPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       147 ~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~  211 (298)
                      .+.-  +.   ..++.+.|. ++..++....+..|.+.|.++++....+..-          .......+.|+++|.+. 
T Consensus       170 ~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-  247 (268)
T 3nok_A          170 AVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-  247 (268)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-
T ss_pred             EEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-
Confidence            3332  11   245677777 6765555556889999999999877644221          01224568999999873 


Q ss_pred             CCccEEEEee
Q 037555          212 KNHGFLAVGM  221 (298)
Q Consensus       212 ~~~~~l~~g~  221 (298)
                         .+++||-
T Consensus       248 ---rlfVTGK  254 (268)
T 3nok_A          248 ---RIFMTGK  254 (268)
T ss_dssp             ---CEEEEET
T ss_pred             ---EEEEeCC
Confidence               5666664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=0.00018  Score=63.46  Aligned_cols=153  Identities=15%  Similarity=0.143  Sum_probs=97.6

Q ss_pred             EEEEcCCCCEEEeEeccCCCCce-------------------EEEEEEcCCceeeecccc--cc-------ccEEEEEEc
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAA-------------------EIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFS  112 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~  112 (298)
                      .+++.|+..+++.+..     ++                   .|..+|..+++.+-.++.  |.       .+.....+.
T Consensus       234 ~~a~d~~~~~vy~~~~-----~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~  308 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTG-----NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN  308 (668)
T ss_dssp             CEEEETTTTEEEEECC-----CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ceEEcCCCCEEEEeCC-----CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence            5688888888887743     33                   499999999998766553  22       222223333


Q ss_pred             CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC------------Cce----------------------
Q 037555          113 HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK------------RII----------------------  155 (298)
Q Consensus       113 ~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~v----------------------  155 (298)
                      .+|+   .++.++.+|.++++|..+++       ++.......            .++                      
T Consensus       309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~-------~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          309 IDGKPRKVLMQAPKNGFFYVLDRTNGK-------LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCC-------EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             cCCcEEEEEEEECCCCEEEEEECCCCC-------EeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            3665   68889999999999988743       221111000            000                      


Q ss_pred             --EEEEEccCCCEEEEe------------------------------------eCCCeEEEEEccCCcceeeeeecCCCC
Q 037555          156 --WSCSWNPFGHEFATG------------------------------------SRDKTVKIWAVENKSSVKQILALPPFN  197 (298)
Q Consensus       156 --~~~~~~~~~~~l~~~------------------------------------~~dg~i~~wd~~~~~~~~~~~~~~~~~  197 (298)
                        ..++++|+..++++.                                    ..+|.|..||+.+++.......    .
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~----~  457 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY----P  457 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE----S
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC----C
Confidence              125677766665542                                    1347899999999887664322    2


Q ss_pred             CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+.....+...+     .++++++.|+.|+.||.+++
T Consensus       458 ~~~~~~~~~t~g-----g~vf~g~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          458 THWNGGTLSTAG-----NLVFQGTAAGQMHAYSADKG  489 (668)
T ss_dssp             SSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             CCCcCceeEeCC-----CEEEEECCcccchhhhhhcC
Confidence            233333444455     68889999999999999887

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.002  Score=53.47  Aligned_cols=125  Identities=6%  Similarity=0.050  Sum_probs=73.8

Q ss_pred             EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555           51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF  127 (298)
Q Consensus        51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  127 (298)
                      .+.........++|+++++.|+.+..........+.+.+.. +...  ..+.. ......++++| ++.++++-..++.|
T Consensus       173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V  250 (430)
T 3tc9_A          173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQV  250 (430)
T ss_dssp             EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEE
Confidence            33334456889999999996666643111112244445533 3222  12221 22356788999 67777776678899


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccC
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVEN  183 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~  183 (298)
                      ..++.....     ...+.... .......++|+|++++|+.+ ...+.|..++...
T Consensus       251 ~~~~~~~~~-----~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          251 FRYDFTTQE-----TTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEETTTTE-----EEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEECCCCc-----EEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            999987421     11111111 12345789999999965555 4578899988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.00025  Score=58.94  Aligned_cols=155  Identities=8%  Similarity=0.048  Sum_probs=96.2

Q ss_pred             ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC----eEEEEE
Q 037555           58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR----QFSVFA  131 (298)
Q Consensus        58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd  131 (298)
                      ....++++| ++..|..+..     .+.|+.+|+..+....... .......++|+++++.|+++.. ++    .+.+++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~-----~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE-----QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB-----TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeC-----CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            457889998 4566666632     3789999998665443333 4456789999999996666554 22    233334


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      .. ..     ......+.. ......++++| ++.++++-..++.|..++........ +.... .......++|+|++ 
T Consensus       212 ~~-g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~~-~~~~P~gia~~pdG-  281 (430)
T 3tc9_A          212 RE-SG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTIQ-DSGWEFHIQFHPSG-  281 (430)
T ss_dssp             GG-GT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEECS-SSSCCEEEEECTTS-
T ss_pred             CC-Cc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEcC-CCCcceeEEEcCCC-
Confidence            32 21     110111111 23356788999 66666665577899999988654321 21222 22456899999998 


Q ss_pred             cCCcc-EEEEeecCCcEEEEEee
Q 037555          211 QKNHG-FLAVGMESGVIELWSIS  232 (298)
Q Consensus       211 ~~~~~-~l~~g~~dg~i~vwd~~  232 (298)
                          . ++++-...+.|..++..
T Consensus       282 ----~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          282 ----NYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             ----SEEEEEETTTTEEEEEEEE
T ss_pred             ----CEEEEEECCCCEEEEEeCC
Confidence                5 45555567889998876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.14  E-value=0.0018  Score=51.51  Aligned_cols=159  Identities=9%  Similarity=-0.060  Sum_probs=97.3

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEecc
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      ..+.+++|++.+..|..+.    ...+.|..+++....... .+...-.....+++.+ .++++++-...+.|.++++..
T Consensus        35 ~~~~~ld~d~~~~~lyw~D----~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSD----VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEE----TTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEeCCCEEEEEE----CCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence            3567899998665555553    346789999987653211 1222223456788887 445555556678899998764


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      ..     .  .............+++.|.+..|+.+..  .+.|...++....... +  ....-.....++++|++.  
T Consensus       111 ~~-----~--~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~--~~~~l~~Pnglavd~~~~--  178 (318)
T 3sov_A          111 SL-----R--KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I--INSEIYWPNGLTLDYEEQ--  178 (318)
T ss_dssp             CS-----C--EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSCEEEEEEETTTT--
T ss_pred             Cc-----E--EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-E--EECCCCCccEEEEeccCC--
Confidence            21     1  1111123345688999997666666653  5788888876433221 1  111234568999998662  


Q ss_pred             CccEEEEeecCCcEEEEEeee
Q 037555          213 NHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd~~~  233 (298)
                        .+.++-...+.|..+++..
T Consensus       179 --~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          179 --KLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             --EEEEEETTTTEEEEEETTS
T ss_pred             --EEEEEECCCCEEEEEcCCC
Confidence              4445545667899988764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.14  E-value=0.00079  Score=53.10  Aligned_cols=166  Identities=7%  Similarity=0.034  Sum_probs=105.2

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-cccc----c--cccEEEEEE---cCCCCEEEEEe
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQS----H--SLTVTQIRF---SHDDNLLLSVS  122 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~~  122 (298)
                      .....-..+++|.+....|..++    -..+.|..|+...+.... .+..    .  ...+..+.|   .|+++++++..
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~----l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSN----LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEE----TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             cCcccCCcCccCcCCCCEEEEEe----ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            33344455889988666666664    357999999997553322 2332    1  124689999   68877777544


Q ss_pred             -------------CCCeEEEEEec---cCCCCccceeeeEEeecc-----------CCceEEEEEccCCCEEEEeeCC-C
Q 037555          123 -------------RDRQFSVFAIQ---RTGTGEIDYQLIARQEAH-----------KRIIWSCSWNPFGHEFATGSRD-K  174 (298)
Q Consensus       123 -------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-g  174 (298)
                                   .+..|..||+.   +...     .....+...           ......++..++|+..++++.. +
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~  159 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP  159 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence                         26789999988   4321     111111111           1247899999999999998888 8


Q ss_pred             eEEEEEccCCcceeeee-ec--CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          175 TVKIWAVENKSSVKQIL-AL--PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       175 ~i~~wd~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .|...+..... ..... ..  .......+.|+++|++     ..|++....|.|..+|+..
T Consensus       160 ~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg-----~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          160 AIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHS-----NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTT-----TEEEEESSSSSEEEEECSS
T ss_pred             eEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCC-----CEEEEEcCCCeEEEEcCCC
Confidence            87777766442 22111 11  1112336799999998     5666665699999999873

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.002  Score=51.17  Aligned_cols=182  Identities=9%  Similarity=-0.056  Sum_probs=103.0

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      ...|+..++.+.+....+. .......++|++.+..| ++-...+.|..+++.......   .....+...-.....+++
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc---ccEEEEeCCCCCcCEEEE
Confidence            4568999998766544444 33457899999866544 444557899999876411000   001112212234578889


Q ss_pred             ccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeeccccc
Q 037555          161 NPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTND  238 (298)
Q Consensus       161 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~  238 (298)
                      .+.+..|+ +-...+.|.+.|+....... +..  ........+++.|.+.    .++++.... +.|..+++...    
T Consensus        85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~--~~~~~P~~iavdp~~g----~ly~~d~~~~~~I~~~~~dG~----  153 (316)
T 1ijq_A           85 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-LFR--ENGSKPRAIVVDPVHG----FMYWTDWGTPAKIKKGGLNGV----  153 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEE-EEE--CTTCCEEEEEEETTTT----EEEEEECSSSCEEEEEETTSC----
T ss_pred             eecCCeEEEEECCCCEEEEEeCCCCceEE-EEE--CCCCCcceEEeCCCCC----EEEEEccCCCCeEEEEcCCCC----
Confidence            87555554 44567889999987543222 211  1234578999998652    344443333 67777776432    


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                               . ...+..  ..-...+.|++++++.      .++++-+..+.|..+|+
T Consensus       154 ---------~-~~~~~~--~~~~~P~gla~d~~~~------~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          154 ---------D-IYSLVT--ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             ---------C-EEEEEC--SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred             ---------C-eEEEEE--CCCCCceEEEEeccCC------EEEEEECCCCeEEEEec
Confidence                     1 111110  1234567899998762      45555556667777765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.08  E-value=0.0008  Score=54.77  Aligned_cols=153  Identities=16%  Similarity=0.071  Sum_probs=96.5

Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc----cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI  140 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (298)
                      +.+|..++.+-      ++.||.-++......+.+...    -..|..+..+|+|++|+..+ +..|.|..+..+.....
T Consensus        29 ~~n~t~i~~a~------~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQ------DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEE------TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEE------CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc
Confidence            45666666662      678888887643333333321    12577899999999999887 56899998874332111


Q ss_pred             c-----eeeeEEeec------cCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCcce-eeee------ecCCCCCc
Q 037555          141 D-----YQLIARQEA------HKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSV-KQIL------ALPPFNSS  199 (298)
Q Consensus       141 ~-----~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~-~~~~------~~~~~~~~  199 (298)
                      .     ....+.+.-      ...+|..+.|+|-   +..|++-..|+.|++||+...... ..+.      .+......
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND  181 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence            0     011122221      2567999999994   468999999999999999862211 1110      11222366


Q ss_pred             eEEEEEeeccccCCccEEEE--eecCCcEEEE
Q 037555          200 VTALSWVGLDRQKNHGFLAV--GMESGVIELW  229 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~--g~~dg~i~vw  229 (298)
                      |.+++|.+++     -.|..  .+..|.|+-.
T Consensus       182 v~S~~Fg~~~-----lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          182 ITDLEFSKDG-----LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEEECTTS-----SCEEEEECTTSCEEEEE
T ss_pred             EEEEEEcCCC-----cEEEEEecCCCCCEEEE
Confidence            8899999866     45555  4477887644

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.05  E-value=0.0062  Score=54.54  Aligned_cols=163  Identities=7%  Similarity=-0.114  Sum_probs=98.0

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEE
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFS  128 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  128 (298)
                      .....+..|+|++....|+.+.    ...+.|+.+++...    .....+.........|++.+.+. ++++-...+.|.
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD----~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~  496 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  496 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEE----TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCceEEEeecccCCeeEEee----ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence            3445678999998666555553    34678988888642    12222332334566788887664 555556678899


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      +.++....       ....+.........|++.|...+|+....  .+.|...++.......   .+...-.....|++.
T Consensus       497 v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~~~l~~P~GLavD  566 (791)
T 3m0c_C          497 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLD  566 (791)
T ss_dssp             EEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSCEEEEEEE
T ss_pred             EEeCCCCe-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEeCCCCCceEEEEe
Confidence            99887421       11112223345789999997666666653  2678888887544322   122233567899999


Q ss_pred             eccccCCccEEEEeecCCcEEEEEeeec
Q 037555          207 GLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +...    .++++-.....|..+++...
T Consensus       567 ~~~~----~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          567 LLSG----RLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             TTTT----EEEEEETTTTEEEEEETTSC
T ss_pred             cCCC----eEEEEeCCCCcEEEEecCCC
Confidence            7762    34444345567888887543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.04  E-value=0.00028  Score=63.10  Aligned_cols=115  Identities=10%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             cEEEEEEc-CCCCEEEEEeC-CC----eEEEEEeccC-CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----
Q 037555          105 TVTQIRFS-HDDNLLLSVSR-DR----QFSVFAIQRT-GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----  173 (298)
Q Consensus       105 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  173 (298)
                      .+...+|+ |||++|+-+.. +|    .|+++|+..+ ...      ...+.   .....+.|+|+++.|+....+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------CCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------Ccccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            67889999 99998775433 33    5999998864 210      00111   113468899999888777654    


Q ss_pred             -CeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeec
Q 037555          174 -KTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVN  234 (298)
Q Consensus       174 -g~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~  234 (298)
                       ..|..+++.+..... .+.... .......+.|+|++     .+|+....   ...|+++|+.++
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg-----~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADT-----NTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECC-CTTCEEEEEECTTS-----SEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCEEEEEECCCCchhcEEEEecC-CCceEEEEEECCCC-----CEEEEEecCCCCceEEEEECCCC
Confidence             257888887654321 111112 23346688999998     56655442   346777777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.04  E-value=0.0023  Score=52.63  Aligned_cols=181  Identities=9%  Similarity=-0.048  Sum_probs=103.3

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      ...|+..++........+. ....+..++|++.+..|..+ ...+.|..+++......   ................+++
T Consensus        91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEEE
Confidence            5689999988655443333 34567899999865555544 45788888887642100   0111222223345678999


Q ss_pred             ccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-c-CCcEEEEEeeecccc
Q 037555          161 NPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-E-SGVIELWSISVNRTN  237 (298)
Q Consensus       161 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~-dg~i~vwd~~~~~~~  237 (298)
                      .+.+..|+ +-...+.|.+.++....... +  +.........+++.|.+     ..|+... . .+.|...++....  
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~-l--~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~~~~dG~~--  236 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-L--FRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVD--  236 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEE-E--EECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEEEETTSCS--
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEE-E--EeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEEEeCCCCc--
Confidence            88554444 44567889999987654322 1  11233457899999965     3444443 2 3677777765431  


Q ss_pred             cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                                 ....+.   ..-...+.|++++++.      .++++-...+.|..+|+
T Consensus       237 -----------~~~~~~---~~l~~P~glavd~~~~------~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          237 -----------IYSLVT---ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             -----------CEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred             -----------cEEEEE---CCCCceEEEEEEeCCC------EEEEEECCCCEEEEEeC
Confidence                       111111   1224567889997662      44444445566776664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.03  E-value=0.003  Score=50.16  Aligned_cols=178  Identities=11%  Similarity=0.021  Sum_probs=102.6

Q ss_pred             ceEEEEEEcCCce--eeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555           82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC  158 (298)
Q Consensus        82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  158 (298)
                      ...|+..++....  ....+. ....+..+.|++.+. ++.+-...+.|..+++.....      ........-.....+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l~~p~gl   84 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECCSCCCEE
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCCCCccEE
Confidence            5789999998653  112222 234567899998544 445555678888888765321      011111122345678


Q ss_pred             EEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee--cCCcEEEEEeeecc
Q 037555          159 SWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM--ESGVIELWSISVNR  235 (298)
Q Consensus       159 ~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~  235 (298)
                      ++.+.+..|+ +-...+.|.++++....... +  ..........+++.|.+     ..|+...  ..+.|...++... 
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~-l--~~~~~~~P~giavdp~~-----g~ly~td~~~~~~I~r~~~dG~-  155 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSS-----GFMYWTDWGEVPKIERAGMDGS-  155 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEE-E--ECSSCSSEEEEEEEGGG-----TEEEEEECSSSCEEEEEETTSC-
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEE-E--EeCCCCCccEEEEeCCC-----CEEEEEecCCCCEEEEEEcCCC-
Confidence            8887555454 44557889999987543222 1  22234557899999876     3555444  2467777776532 


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                                  .....+.   ..-...+.|++++++.      .++++-+..+.|..+++
T Consensus       156 ------------~~~~~~~---~~l~~Pnglavd~~~~------~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          156 ------------SRFIIIN---SEIYWPNGLTLDYEEQ------KLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             ------------SCEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred             ------------CeEEEEE---CCCCCccEEEEeccCC------EEEEEECCCCEEEEEcC
Confidence                        1111111   1123467899998652      45555556677777765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.02  E-value=0.00023  Score=62.74  Aligned_cols=100  Identities=9%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             ceEEEEEEcCCceeeeccccc---c----------------------------ccEEEEEEcCCCCEEEEEeCCCe----
Q 037555           82 AAEIWLWEVGSWKAMGRLQSH---S----------------------------LTVTQIRFSHDDNLLLSVSRDRQ----  126 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg~----  126 (298)
                      ++.|..+|..+|+.+-.+...   .                            .....+++.|+..+++.++.++.    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            689999999999887655311   0                            01123678887788888877663    


Q ss_pred             ---------------EEEEEeccCCCCccceeeeEEeec--cC-------CceEEEEEccCCC---EEEEeeCCCeEEEE
Q 037555          127 ---------------FSVFAIQRTGTGEIDYQLIARQEA--HK-------RIIWSCSWNPFGH---EFATGSRDKTVKIW  179 (298)
Q Consensus       127 ---------------i~iwd~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~w  179 (298)
                                     |..+|..++       +.+-.+..  |.       .+.....+..+++   .++.++.+|.++++
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG-------~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTG-------KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTC-------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCC-------ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence                           777887763       22322221  21       2222223333554   68899999999999


Q ss_pred             EccCCccee
Q 037555          180 AVENKSSVK  188 (298)
Q Consensus       180 d~~~~~~~~  188 (298)
                      |.++++.+.
T Consensus       330 D~~tG~~l~  338 (668)
T 1kv9_A          330 DRTNGKLIS  338 (668)
T ss_dssp             ETTTCCEEE
T ss_pred             ECCCCCEec
Confidence            999988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.01  E-value=5.1e-05  Score=67.10  Aligned_cols=159  Identities=8%  Similarity=-0.086  Sum_probs=92.8

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  131 (298)
                      ..+..++|++.+..|+.+.    ...+.|+.+++..    ......+.........+++.+ .++++++-...+.|.+++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD----~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECC----TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEe----cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            4566889998777776663    2357899999875    222222221222345688875 445555555678898888


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      +...       .....+.........++++|.+.+|+.+.. . +.|..+++.......   .....-.....|+|+|.+
T Consensus       482 ~dg~-------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          482 TKGV-------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             SSSC-------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---ESCSSCSSCCCEEECTTT
T ss_pred             cCCC-------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---EEeCCCCCccEEEEeccC
Confidence            7642       111111212234577899997666655543 2 678887776433221   111122446789999876


Q ss_pred             ccCCccEEEEeecCCcEEEEEeee
Q 037555          210 RQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       210 ~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      .    .++++-...+.|.++++..
T Consensus       552 ~----~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          552 G----RLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             C----CEEEEETTTTEEEEECSSS
T ss_pred             C----EEEEEecCCCeEEEEccCC
Confidence            2    4555555667899998864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.99  E-value=0.0086  Score=53.97  Aligned_cols=177  Identities=11%  Similarity=0.037  Sum_probs=109.6

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------cccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------SHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      ..|.++...++|.+-+..      .++-|..|+..+++......        .....|.++...+++++|..|+.++-|.
T Consensus       357 ~~V~~i~~d~~g~lWiGt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~  430 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGT------NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLS  430 (795)
T ss_dssp             SSEEEEEECTTSCEEEEE------SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CeeEEEEECCCCCEEEEE------CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence            469999998888765543      25568899987654432211        1235789999988888566677777789


Q ss_pred             EEEeccCCCCccceeeeEEee-----ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCc
Q 037555          129 VFAIQRTGTGEIDYQLIARQE-----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSS  199 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~  199 (298)
                      .+|..+..        ...+.     .....|.++...+++++.+.. .+| |.+||..+.+... +...    ......
T Consensus       431 ~~d~~~~~--------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~  499 (795)
T 4a2l_A          431 ILHRNSGQ--------VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTT-IEKEKDGTPVVSKQ  499 (795)
T ss_dssp             EEETTTCC--------EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEE-CCBCTTCCBCCCCC
T ss_pred             EEeCCCCc--------EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEE-ccccccccccCCce
Confidence            99977532        11111     134578899888877755544 444 8889987654322 1111    012356


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec----cCCcccceEEEEEeecCC
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD----PFACHVAAVNRMAWKTHE  272 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~  272 (298)
                      |.++...+++     . |..|+. +-|..|+..+..             .  .+.    ........|.++...+++
T Consensus       500 i~~i~~d~~g-----~-lWigt~-~Gl~~~~~~~~~-------------~--~~~~~~~~~~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          500 ITTLFRDSHK-----R-LWIGGE-EGLSVFKQEGLD-------------I--QKASILPVSNVTKLFTNCIYEASNG  554 (795)
T ss_dssp             EEEEEECTTC-----C-EEEEES-SCEEEEEEETTE-------------E--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred             EEEEEECCCC-----C-EEEEeC-CceEEEeCCCCe-------------E--EEecCCCCCCCCCCeeEEEEECCCC
Confidence            8888888776     3 444555 458888887542             1  111    011234578888888887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.98  E-value=0.0036  Score=49.36  Aligned_cols=159  Identities=9%  Similarity=0.029  Sum_probs=88.0

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCc-eEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAA-AEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d-~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      ...+..+++.++|+++++...    .+ ..|..++..+++...... ........++..+++..+++-..++.|.++|..
T Consensus        71 ~~~p~gia~~~dG~l~vad~~----~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A           71 EGKVSGLAFTSNGDLVATGWN----ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             SSEEEEEEECTTSCEEEEEEC----TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             CCCceeEEEcCCCcEEEEecc----CCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence            346889999999996665421    12 357777777665432221 111223445555555445554468888888865


Q ss_pred             cCCCCccceeeeE--------EeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC-CcceeeeeecCCCCCceEEE
Q 037555          134 RTGTGEIDYQLIA--------RQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN-KSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       134 ~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~  203 (298)
                      ...     .....        .....-.....+  +|+++.|+.+. ..+.|..+|+.. +.. .....+. .......+
T Consensus       147 ~~~-----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~-~~~~P~gi  217 (306)
T 2p4o_A          147 QPS-----GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFV-EQTNIDDF  217 (306)
T ss_dssp             TTE-----EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEE-ESCCCSSE
T ss_pred             CCc-----EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEe-ccCCCCCe
Confidence            311     01110        000011223445  77887665554 568899999875 221 1000111 11235668


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      ++.+++     .++++....+.|.+++..
T Consensus       218 ~vd~dG-----~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          218 AFDVEG-----NLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEBTTC-----CEEEECBTTCCEEEECTT
T ss_pred             EECCCC-----CEEEEeCCCCeEEEECCC
Confidence            888887     676666667889998864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00073  Score=59.47  Aligned_cols=119  Identities=11%  Similarity=0.154  Sum_probs=74.5

Q ss_pred             EEEEcC-CCCEEEeEeccCCC------CceEEEEEEcCCceeee--ccc-cccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555           61 SLCCDH-QGKLVASSCKAQST------AAAEIWLWEVGSWKAMG--RLQ-SHSLTVTQIRFSHDDNLLLSVSR-DRQFSV  129 (298)
Q Consensus        61 ~~~~s~-~~~~l~~~~~~~~~------~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  129 (298)
                      ++++.+ ++++++.|+.+...      ....+.+||..+++...  .+. .+.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566677 88888888753210      11368899998765332  221 12333445677889999999884 568999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CC-----CeEEEEEccCCc
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RD-----KTVKIWAVENKS  185 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~~  185 (298)
                      ||..+..     +..+..+.. ...-.+++..++++.++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~-----W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDS-----WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTE-----EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCc-----eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9987642     333322221 12223455667888888888 34     468999987654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.0053  Score=51.03  Aligned_cols=228  Identities=7%  Similarity=-0.029  Sum_probs=113.9

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF  127 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  127 (298)
                      ..+.........++++++|+++++-.... .....+...+...+.. ...+. .-.....++++| ++.++++-..++.|
T Consensus       175 ~~~~~~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V  252 (433)
T 4hw6_A          175 DIKTTNIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMI  252 (433)
T ss_dssp             EEECCCCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEE
T ss_pred             EEeecCCCCccEEEECCCCCEEEEcCCCC-cccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEE
Confidence            33434445688999999999444442100 0012233333321111 01111 123346688999 67766666677889


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC--Ccc--eeeeeecCC-------
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN--KSS--VKQILALPP-------  195 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~--~~~--~~~~~~~~~-------  195 (298)
                      +.++......    ...+.... ....-..++|+|++++|+.+. ..+.|+.++...  +..  ...+....+       
T Consensus       253 ~~~d~~~g~~----~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg  327 (433)
T 4hw6_A          253 SSYDPATGTL----TEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDG  327 (433)
T ss_dssp             EEECTTTCCE----EEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCE
T ss_pred             EEEECCCCeE----EEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCC
Confidence            8888764210    01111111 112234699999998665554 567899988653  211  011111000       


Q ss_pred             -----CCCceEEEEE---------eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-CCcceeeeeccCCccc
Q 037555          196 -----FNSSVTALSW---------VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-STANIIIRFDPFACHV  260 (298)
Q Consensus       196 -----~~~~v~~~~~---------~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  260 (298)
                           .-.....+++         .+.+     .++++-...+.|+.++.. +.......... .......-.......-
T Consensus       328 ~~~~a~~~~P~giav~~n~~y~~dd~~g-----~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~  401 (433)
T 4hw6_A          328 MGTGARLWGPNQGIFVKNEAYAGEEDEY-----DFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALF  401 (433)
T ss_dssp             EGGGSBCSSEEEEEEEECGGGTTSSCCE-----EEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBC
T ss_pred             cccceEEcCCccEEEEccccccccCCCC-----cEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEe
Confidence                 1123567888         4444     555555566788888742 21100000000 0000000000000112


Q ss_pred             ceEEEEEee-cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          261 AAVNRMAWK-THEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       261 ~~v~~~~~~-~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .....|+++ +++       .++++-.....|+.++++
T Consensus       402 ~~P~giavd~~~g-------~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          402 NHPTSIAYDMKRK-------CFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             SSEEEEEEETTTT-------EEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEECCCC-------EEEEEeCCCCEEEEEecC
Confidence            346789999 666       777777778889988764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.96  E-value=0.0059  Score=55.02  Aligned_cols=179  Identities=12%  Similarity=0.068  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      ..|.++...+++..|..|.     .++-|.++|..+++......    .....|.++...+++++.+... + -+.+|+.
T Consensus       406 ~~v~~i~~d~~g~~lWigt-----~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~  478 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGT-----HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNP  478 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEE-----TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEe-----CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeC
Confidence            5689999988898455553     24569999988765432211    2345789999988887665544 4 4777887


Q ss_pred             ccCCCCccceeeeEEe----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEE
Q 037555          133 QRTGTGEIDYQLIARQ----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALS  204 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~  204 (298)
                      .+..     .......    ......|.++...++++..+...  +-|..||..+.+. . +...    ......|.++.
T Consensus       479 ~~~~-----~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~  549 (795)
T 4a2l_A          479 EQRS-----FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIY  549 (795)
T ss_dssp             TTTE-----EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEE
T ss_pred             CCCe-----EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEE
Confidence            6421     1111100    11235688998888887665544  4488888876543 1 1110    01234688888


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-ccceEEEEEeecCC
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-HVAAVNRMAWKTHE  272 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  272 (298)
                      ..+++     . |..|+.. -|..||..+.              ....+....+ ....|.++...+++
T Consensus       550 ~d~~g-----~-lWigT~~-Gl~~~d~~~~--------------~~~~~~~~~gl~~~~i~~i~~d~~g  597 (795)
T 4a2l_A          550 EASNG-----I-IWVGTRE-GFYCFNEKDK--------------QIKRYNTTNGLPNNVVYGILEDSFG  597 (795)
T ss_dssp             ECTTS-----C-EEEEESS-CEEEEETTTT--------------EEEEECGGGTCSCSCEEEEEECTTS
T ss_pred             ECCCC-----C-EEEEeCC-CceeECCCCC--------------cEEEeCCCCCCchhheEEEEECCCC
Confidence            88776     3 4445544 4778886543              1122211111 23457788877777

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.00083  Score=52.96  Aligned_cols=164  Identities=10%  Similarity=0.053  Sum_probs=98.5

Q ss_pred             ccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccceeeeEEeec----c--CCceEEEEE---ccCCCEEEEee--
Q 037555          104 LTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEIDYQLIARQEA----H--KRIIWSCSW---NPFGHEFATGS--  171 (298)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~--  171 (298)
                      ..-.+++|++....|..++ ..+.|..|+.....     ...+ .+..    .  ...+..|.|   .|+++++++..  
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-----~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-----HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-----EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-----EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3345788988555555555 78999999986321     1112 2221    0  124578999   68877776543  


Q ss_pred             -----------CCCeEEEEEcc---CCcceeeeeecCC-----------CCCceEEEEEeeccccCCccEEEEeecC-Cc
Q 037555          172 -----------RDKTVKIWAVE---NKSSVKQILALPP-----------FNSSVTALSWVGLDRQKNHGFLAVGMES-GV  225 (298)
Q Consensus       172 -----------~dg~i~~wd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~  225 (298)
                                 .+..|..||+.   +++..... .+..           .......++..+++     +..++++.. +.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~G-----naYVt~s~~~~~  160 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDG-----NSYVAFALGMPA  160 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTS-----CEEEEEEESSCE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCC-----CEEEeCCCCCCe
Confidence                       26779999998   66655422 2221           11247789999988     777777777 76


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |..++......           .....-.+........+.|+++|++       ..|+.....+.|..+|++
T Consensus       161 I~rV~pdG~~~-----------~~~~~~~~~~~~~~G~nGIv~~pdg-------~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          161 IARVSADGKTV-----------STFAWESGNGGQRPGYSGITFDPHS-------NKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECTTSCCE-----------EEEEECCCCSSSCCSCSEEEEETTT-------TEEEEESSSSSEEEEECS
T ss_pred             EEEEeCCCCEE-----------eeeeecCCCcccccCcceEEEeCCC-------CEEEEEcCCCeEEEEcCC
Confidence            65555442200           0000000011123346789999999       666666669999888863

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.91  E-value=0.0011  Score=58.32  Aligned_cols=85  Identities=12%  Similarity=0.069  Sum_probs=52.6

Q ss_pred             CCCceEEecc-CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcCCCCEEEEE
Q 037555           45 LWPESHKLYG-HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSV  121 (298)
Q Consensus        45 ~~~~~~~~~~-h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~  121 (298)
                      .|..+..+.. +.....++++..++++++.|+.    .+..+.+||..+.+-...  +... ..-.+++..+++++++.|
T Consensus       230 ~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~G  304 (656)
T 1k3i_A          230 IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIG  304 (656)
T ss_dssp             CBCCCEEEECSCCCSSCEEEECTTSCEEEECSS----STTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEEC
T ss_pred             cEEeCcccCCCCCCccccccCCCCCCEEEeCCC----CCCceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEe
Confidence            3444444322 2233445777889999999975    245799999887653322  2211 112345566789999988


Q ss_pred             e-CC-----CeEEEEEecc
Q 037555          122 S-RD-----RQFSVFAIQR  134 (298)
Q Consensus       122 ~-~d-----g~i~iwd~~~  134 (298)
                      + .+     ..+.+||..+
T Consensus       305 G~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          305 GSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             CCCCSSSCCCCEEEEETTT
T ss_pred             CcccCCcccccceEeCCCC
Confidence            8 34     4688898765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.91  E-value=0.0013  Score=56.81  Aligned_cols=157  Identities=11%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             EEEEcCCCCEEEeEeccCC-------CC----ceEEEEEEcCCceeeecccc--c--------cccEEEEEEcCCCC---
Q 037555           61 SLCCDHQGKLVASSCKAQS-------TA----AAEIWLWEVGSWKAMGRLQS--H--------SLTVTQIRFSHDDN---  116 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~-------~~----d~~i~vw~~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~---  116 (298)
                      .+++.++...+..+.....       ..    .+.|..+|..+++.+-.++.  |        ..++. +....+|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            3566676666665532100       01    13699999999988766542  2        12221 22224674   


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC-------------Cce--------------------------EE
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-------------RII--------------------------WS  157 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~v--------------------------~~  157 (298)
                      .++.++.+|.+.++|..+++       .+-......             .++                          ..
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~-------~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGN-------LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCC-------EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             EEEEeCCCcEEEEEECCCCC-------EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            57778889999999987643       221111000             111                          23


Q ss_pred             EEEccCCCEEEEee-------------------------------------CCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555          158 CSWNPFGHEFATGS-------------------------------------RDKTVKIWAVENKSSVKQILALPPFNSSV  200 (298)
Q Consensus       158 ~~~~~~~~~l~~~~-------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v  200 (298)
                      ++++|+..++++..                                     .+|.|..||..+++.......    ...+
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~----~~~~  466 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE----KFAA  466 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE----SSCC
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC----CCCc
Confidence            56778777776653                                     347899999998887663322    1222


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+..+...+     ..++.++.|+.|+.+|.+++
T Consensus       467 ~~~~~~t~g-----g~v~~g~~dg~l~a~D~~tG  495 (571)
T 2ad6_A          467 WGGTLYTKG-----GLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             CSBCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             cceeEEECC-----CEEEEEcCCCeEEEEECCCC
Confidence            222223333     57778899999999999888

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.0064  Score=54.66  Aligned_cols=193  Identities=13%  Similarity=0.115  Sum_probs=111.9

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      ..|.++...++|.+.+..      .++-|.+|+..+++.....   ......|.++...+++.+.+ |+.++-|..++..
T Consensus       363 ~~v~~i~~d~~g~lWigt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGT------DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             SCEEEEEECTTSCEEEEE------BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred             cceEEEEEcCCCCEEEEe------CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence            468999988888765543      2445888998765432211   12346789999888876555 5666668788765


Q ss_pred             cCCCCccceeeeEEee---ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC---CCCCceEEEEEee
Q 037555          134 RTGTGEIDYQLIARQE---AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVG  207 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~  207 (298)
                      +.       . ...+.   .....|.++...+++++. .|+. +-|..+|..+.+... +....   .....|.++...+
T Consensus       436 ~~-------~-~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~  504 (781)
T 3v9f_A          436 LK-------K-FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDS  504 (781)
T ss_dssp             SC-------E-EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECT
T ss_pred             CC-------c-EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEe-cccCcccccccceeEEEEEcC
Confidence            42       1 12221   134578888888777644 4555 458889987655432 11111   1135688888877


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                      .+      .|..|+.++-|..||..+.              ....+.. .......|.++...+++       .+.++ +
T Consensus       505 ~g------~lWigt~~~Gl~~~~~~~~--------------~~~~~~~~~~l~~~~i~~i~~d~~g-------~lWi~-T  556 (781)
T 3v9f_A          505 EG------RFWIGTFGGGVGIYTPDMQ--------------LVRKFNQYEGFCSNTINQIYRSSKG-------QMWLA-T  556 (781)
T ss_dssp             TC------CEEEEESSSCEEEECTTCC--------------EEEEECTTTTCSCSCEEEEEECTTS-------CEEEE-E
T ss_pred             CC------CEEEEEcCCCEEEEeCCCC--------------eEEEccCCCCCCCCeeEEEEECCCC-------CEEEE-E
Confidence            76      3555665444777776543              1112211 11124568888887777       44333 3


Q ss_pred             CCCcEEEeE
Q 037555          287 ADNTVRVFQ  295 (298)
Q Consensus       287 ~d~~i~iw~  295 (298)
                      .+|.|..||
T Consensus       557 ~~Glv~~~d  565 (781)
T 3v9f_A          557 GEGLVCFPS  565 (781)
T ss_dssp             TTEEEEESC
T ss_pred             CCCceEEEC
Confidence            355435554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.01  Score=49.85  Aligned_cols=162  Identities=13%  Similarity=0.064  Sum_probs=96.2

Q ss_pred             ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEE-------cCCCCEEEEEeCCC-
Q 037555           58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRF-------SHDDNLLLSVSRDR-  125 (298)
Q Consensus        58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~dg-  125 (298)
                      ....|+|+| ++..|..+..    ..+.|++.|+.++........   .......++|       +++++.|+++...+ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            366899998 4555555532    246799999987665443322   2235789999       99999676666544 


Q ss_pred             ----e--EEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEcc-------CCcc---
Q 037555          126 ----Q--FSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVE-------NKSS---  186 (298)
Q Consensus       126 ----~--i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~-------~~~~---  186 (298)
                          .  |.+++........  .....+..+    .....++++|++ .++++-..++.|..+|+.       ++..   
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence                2  5555532211100  001122221    233567889954 555555677889999997       4443   


Q ss_pred             --------eeeeeecCCCCCceEEEEEeeccccCCccE-EEEeecCCcEEEEEeee
Q 037555          187 --------VKQILALPPFNSSVTALSWVGLDRQKNHGF-LAVGMESGVIELWSISV  233 (298)
Q Consensus       187 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-l~~g~~dg~i~vwd~~~  233 (298)
                              ...+.... .......++|+|++     .+ +++-.....|+.++...
T Consensus       292 ~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G-----~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIA-DPSWEFQIFIHPTG-----KYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             BGGGCTTTEEEEEECS-SSSCCEEEEECTTS-----SEEEEEETTTTEEEEEEEET
T ss_pred             cccccccccceeEecC-CCCCceEEEEcCCC-----CEEEEEeCCCCEEEEEecCC
Confidence                    11222232 33456899999998     64 44445667888877653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.80  E-value=0.0012  Score=57.10  Aligned_cols=53  Identities=8%  Similarity=-0.009  Sum_probs=35.7

Q ss_pred             CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          173 DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       173 dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +|.|..||+.+++..-.....    .++..-.....+     .+++.|+.|+.|+.||.+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tag-----glvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAG-----NLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             cceEEEEECCCCCEEEEecCC----CCCcccceEeCC-----CEEEEECCCCcEEEEECCCC
Confidence            578999999998876533221    122111122223     57888999999999999988

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.78  E-value=0.0068  Score=46.26  Aligned_cols=172  Identities=12%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             ccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCe
Q 037555           98 RLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKT  175 (298)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (298)
                      .+.+-...+..++|+|++..| ++...++.|...|..        ...+..+. .-......+++.+++.++++.-.++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--------g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~   92 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--------GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA   92 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--------CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--------CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence            345555679999999976655 456677888888876        22333332 11245678888888876666556788


Q ss_pred             EEEEEccCCccee--eeeecC----CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555          176 VKIWAVENKSSVK--QILALP----PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI  249 (298)
Q Consensus       176 i~~wd~~~~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  249 (298)
                      +.++++.....+.  ....+.    ..+.....++|+|.+     ..|.++.+.....+|.+... .. .     .....
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-----~~L~va~E~~p~~i~~~~g~-~~-~-----~~l~i  160 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-----HTFWFFKEKNPIEVYKVNGL-LS-S-----NELHI  160 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-----TEEEEEEESSSEEEEEEEST-TC-S-----SCCEE
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-----CEEEEEECcCCceEEEEccc-cc-C-----Cceee
Confidence            9999887654321  111111    234557899999987     56777777666677776521 00 0     00011


Q ss_pred             eee--eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          250 IIR--FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       250 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ...  +. -..+...+.+++++|...      .+++.......|..+|.
T Consensus       161 ~~~~~~~-~~~~~~d~S~l~~dp~tg------~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          161 SKDKALQ-RQFTLDDVSGAEFNQQKN------TLLVLSHESRALQEVTL  202 (255)
T ss_dssp             EECHHHH-HTCCSSCCCEEEEETTTT------EEEEEETTTTEEEEECT
T ss_pred             ecchhhc-cccccCCceeEEEcCCCC------eEEEEECCCCeEEEEcC
Confidence            100  00 011233568899999762      66666667777777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.0093  Score=53.44  Aligned_cols=181  Identities=9%  Similarity=-0.045  Sum_probs=99.6

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      ...|+..++...+....+. ....+..++|.+... ++++-...+.|+.+++......   ......+.........|++
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEecCCCCcceeee
Confidence            4567888887554433333 345577899998554 4455555678888887642110   0112222223345678999


Q ss_pred             ccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cC-CcEEEEEeeecccc
Q 037555          161 NPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ES-GVIELWSISVNRTN  237 (298)
Q Consensus       161 ~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~d-g~i~vwd~~~~~~~  237 (298)
                      .+.++.|+.+ ...+.|.+.++....... +  +.........|++.|..     ..|+... .. +.|.+.++...   
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~-l--~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~~~~dG~---  547 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-L--FRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGV---  547 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEE-E--EECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEEEETTSC---
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEE-E--EeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEEEecCCC---
Confidence            8877555555 457889999987544322 2  11233457899999975     3444443 33 67777776543   


Q ss_pred             cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                                .....+.   ..-...+.|++++.+.      .++++-.....|...++
T Consensus       548 ----------~~~~lv~---~~l~~P~GLavD~~~~------~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          548 ----------DIYSLVT---ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             ----------CEEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred             ----------ceEEEEe---CCCCCceEEEEecCCC------eEEEEeCCCCcEEEEec
Confidence                      1111111   1224567788886551      34444344455655554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=0.019  Score=51.68  Aligned_cols=202  Identities=10%  Similarity=0.020  Sum_probs=112.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-------cccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-------SHSLTVTQIRFSHDDNLLLSVSRDRQFSV  129 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (298)
                      ..|.++...+++.+.+..     . + -|.+||..+++......       .....|.++...++|.+. .|+..+-|.+
T Consensus       211 ~~i~~i~~d~~g~lwigt-----~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~  282 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-----S-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMI  282 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-----T-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEE
T ss_pred             CceeEEEEcCCCCEEEEe-----C-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEE
Confidence            468889888888877655     1 3 58899987665432211       124568999988887644 4555455777


Q ss_pred             EEeccCCCCccce---eeeEE----eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-------cCC
Q 037555          130 FAIQRTGTGEIDY---QLIAR----QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-------LPP  195 (298)
Q Consensus       130 wd~~~~~~~~~~~---~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~  195 (298)
                      ++...........   ..+..    .......|.++...+++++ -.|+.++-|..++........ +..       ...
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l  360 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSL  360 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEE-EC----CCCSSCC
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCccee-eccCccccccCCC
Confidence            8876532100000   00000    0113457899988888764 456656668888876543221 100       011


Q ss_pred             CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555          196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK  275 (298)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  275 (298)
                      ....|.++...+++      .|..|+.++-|..|+..+....             ............|.++...+++   
T Consensus       361 ~~~~v~~i~~d~~g------~lWigt~~~Gl~~~~~~~~~~~-------------~~~~~~~~~~~~v~~i~~d~~g---  418 (781)
T 3v9f_A          361 SNKVVSSVCDDGQG------KLWIGTDGGGINVFENGKRVAI-------------YNKENRELLSNSVLCSLKDSEG---  418 (781)
T ss_dssp             SSSCEEEEEECTTS------CEEEEEBSSCEEEEETTEEEEE-------------CC-----CCCSBEEEEEECTTS---
T ss_pred             CCcceEEEEEcCCC------CEEEEeCCCcEEEEECCCCeEE-------------EccCCCCCCCcceEEEEECCCC---
Confidence            23568888887766      4667776666888887653111             0000011234568888877766   


Q ss_pred             CCcceEEEeeeCCCcEEEeE
Q 037555          276 NSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       276 ~~~~~~l~s~~~d~~i~iw~  295 (298)
                          .+.+ ++.++-|..++
T Consensus       419 ----~lWi-gt~~~Gl~~~~  433 (781)
T 3v9f_A          419 ----NLWF-GTYLGNISYYN  433 (781)
T ss_dssp             ----CEEE-EETTEEEEEEC
T ss_pred             ----CEEE-EeccCCEEEEc
Confidence                3333 44444455554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.70  E-value=0.005  Score=53.35  Aligned_cols=74  Identities=14%  Similarity=0.062  Sum_probs=46.0

Q ss_pred             EEEEcCCCCEEEeEeccCC-----------CCceEEEEEEcCCceeeecccc--cc--------ccEEEEEEc-CCC---
Q 037555           61 SLCCDHQGKLVASSCKAQS-----------TAAAEIWLWEVGSWKAMGRLQS--HS--------LTVTQIRFS-HDD---  115 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~-----------~~d~~i~vw~~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~---  115 (298)
                      .+++.+...+++.+..+..           .....|..+|..+++.+-.++.  |.        .++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            3456666677776643100           0024799999999988766543  21        1222 2222 467   


Q ss_pred             CEEEEEeCCCeEEEEEeccC
Q 037555          116 NLLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~  135 (298)
                      ..++.++.+|.+.++|..++
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEECCCcEEEEEECCCC
Confidence            46777889999999998764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.70  E-value=0.0033  Score=54.29  Aligned_cols=29  Identities=14%  Similarity=0.039  Sum_probs=22.6

Q ss_pred             cCCC---EEEEeeCCCeEEEEEccCCcceeee
Q 037555          162 PFGH---EFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       162 ~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      ++++   .++.++.+|.+.++|.++++.+...
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            4563   5777888999999999998876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.59  E-value=0.031  Score=48.70  Aligned_cols=160  Identities=9%  Similarity=-0.078  Sum_probs=96.6

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEec
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~  133 (298)
                      -..+..++|++.+..|..+-    ...+.|..++++.... ...+...-.....+++.+.+. ++++-...+.|.+.+++
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD----~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSD----VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEE----TTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEE----CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence            44578999999777776663    2467899998875432 222332234678999998555 55555567899999987


Q ss_pred             cCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          134 RTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ...        ...+. ..-.....|++.|.+.+|+....  .+.|...++....... +  ....-.....+++++.+.
T Consensus       115 G~~--------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~-l--~~~~~~~P~Glald~~~~  183 (619)
T 3s94_A          115 GSL--------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I--INSEIYWPNGLTLDYEEQ  183 (619)
T ss_dssp             SCS--------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSSEEEEEEETTTT
T ss_pred             CCC--------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE-E--EeCCCCCCcEEEEEccCC
Confidence            421        11111 22344678999997666666653  3677777776433322 1  112234578999998762


Q ss_pred             cCCccEEEEeecCCcEEEEEeeec
Q 037555          211 QKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                          .+.++-...+.|..+++...
T Consensus       184 ----~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          184 ----KLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             ----EEEEEETTTCCEEEESSSCC
T ss_pred             ----EEEEEeCCCCeEEEecCCCC
Confidence                44444445677888887643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.56  E-value=0.02  Score=45.59  Aligned_cols=150  Identities=8%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      ...+.++.|.+ +..++++      ..+.|.. ..+.++.-..+   ..+...+..+.+.+++..++++ .+|.|  |..
T Consensus        79 ~~~~~~i~~~~-~~~~~~g------~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S  147 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVG------EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRT  147 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEE------ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEE
T ss_pred             CccEEEEEecC-CeEEEEE------CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEE
Confidence            44789999986 4555544      2454443 33333322221   1233456778877766655554 45543  322


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                      .....   .+..+.  ......+..+.+.+++.+++.+...+..+-.|- .+.....+ .. .....+..+.+.+++   
T Consensus       148 ~DgG~---tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~-~~-~~~~~~~~~~~~~~g---  216 (327)
T 2xbg_A          148 KDSGK---NWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPH-NR-TTSRRLHNMGFTPDG---  216 (327)
T ss_dssp             SSTTS---SEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEE-EC-CSSSCEEEEEECTTS---
T ss_pred             cCCCC---CCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeEC-CC-CCCCccceeEECCCC---
Confidence            22111   033322  234557889999998887776654443343442 12222222 11 245678888888876   


Q ss_pred             CccEEEEeecCCcEEEEE
Q 037555          213 NHGFLAVGMESGVIELWS  230 (298)
Q Consensus       213 ~~~~l~~g~~dg~i~vwd  230 (298)
                        .++ .++.+|.+++.+
T Consensus       217 --~~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          217 --RLW-MIVNGGKIAFSD  231 (327)
T ss_dssp             --CEE-EEETTTEEEEEE
T ss_pred             --CEE-EEeCCceEEEec
Confidence              444 445678777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.53  E-value=0.0084  Score=51.97  Aligned_cols=101  Identities=9%  Similarity=-0.003  Sum_probs=61.3

Q ss_pred             ceEEEEEEcCCceeeecccccccc-------------------------------------E-EEEEEcCCCCEEEEEeC
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLT-------------------------------------V-TQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~  123 (298)
                      ++.|+.+|..+++.+-.+......                                     + ...++.++..+++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            789999999999877554321100                                     0 13455566667777665


Q ss_pred             C----------------CeEEEEEeccCCCCccceeeeEEee--ccC--------CceEEEEEc-cCC---CEEEEeeCC
Q 037555          124 D----------------RQFSVFAIQRTGTGEIDYQLIARQE--AHK--------RIIWSCSWN-PFG---HEFATGSRD  173 (298)
Q Consensus       124 d----------------g~i~iwd~~~~~~~~~~~~~~~~~~--~~~--------~~v~~~~~~-~~~---~~l~~~~~d  173 (298)
                      +                +.|.-+|..+++       .+-.+.  .|.        .++. +... .++   ..++.++.+
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~-------~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~  332 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGE-------AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRN  332 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCC-------EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCc-------eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCC
Confidence            5                367778877632       222222  221        1222 2222 356   467778899


Q ss_pred             CeEEEEEccCCcceeee
Q 037555          174 KTVKIWAVENKSSVKQI  190 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~  190 (298)
                      |.+.++|.++++.+...
T Consensus       333 G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          333 GIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEE
T ss_pred             cEEEEEECCCCCEeecc
Confidence            99999999998877643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.53  E-value=0.0027  Score=51.75  Aligned_cols=116  Identities=14%  Similarity=0.149  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------------eecccc------ccccEEEEEEcC---CCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------------MGRLQS------HSLTVTQIRFSH---DDN  116 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------------~~~~~~------~~~~v~~~~~~~---~~~  116 (298)
                      .|..+..||+|++||..+      +..|.|-.+..+..            .+.+.-      ...+|..+.|+|   .+.
T Consensus        67 ~i~qlvlSpsG~lLAl~g------~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds  140 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN------DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDS  140 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC------SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGC
T ss_pred             ceeEEEECCCCCEEEEec------CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCC
Confidence            678899999999999985      57899988863210            111221      246799999999   456


Q ss_pred             EEEEEeCCCeEEEEEeccCCCCcccee---eeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEE
Q 037555          117 LLLSVSRDRQFSVFAIQRTGTGEIDYQ---LIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIW  179 (298)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~w  179 (298)
                      .|++-..|+.|++||+......+...+   ...........|.+++|.+++-.|+..+  ..|.|+-.
T Consensus       141 ~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          141 CIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             eEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            899999999999999987332211000   0011112336788999999887777755  77877643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.48  E-value=0.023  Score=44.48  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGE  139 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  139 (298)
                      ++.+++.|+.+....-..+.+||..+.+-.  ..+.........+.+  ++.+++.|+.++     .+.+||+.+..   
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~---  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE---  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE---
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe---
Confidence            677777776533223356889998765432  222211111222222  567777777553     46677766532   


Q ss_pred             cceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                        +..+..+...... .+++. -++..++.|+.+       ..+.+||+.+.+-.. +..++..... .+++.. ++   
T Consensus       136 --W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~-~~---  205 (302)
T 2xn4_A          136 --WFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY-IAEMSTRRSG-AGVGVL-NN---  205 (302)
T ss_dssp             --EEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE-ECCCSSCCBS-CEEEEE-TT---
T ss_pred             --EeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE-CCCCcccccc-ccEEEE-CC---
Confidence              3333222211111 12222 256666666542       358889987754322 2122211111 222222 33   


Q ss_pred             CccEEEEeecC-----CcEEEEEeeec
Q 037555          213 NHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       213 ~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                        .+++.|+.+     ..+.+||+.+.
T Consensus       206 --~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          206 --LLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             --EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             --EEEEECCCCCCcccceEEEEeCCCC
Confidence              577777654     36888887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.45  E-value=0.0089  Score=44.14  Aligned_cols=110  Identities=9%  Similarity=-0.007  Sum_probs=65.7

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc--------EEEEEEcCCCCEEEEEeCCCeEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT--------VTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      ..+..++|+|+|.+.++.       ++.++-.+..+.....-+. ....        ..++.|.|+|.+.++  .||.|.
T Consensus        41 ~~~~~laf~P~G~LYaV~-------~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVL-------NDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECTTSCEEEEE-------TTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred             ccceeEEECCCccEEEEe-------CCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEE
Confidence            367799999999977773       6777766664422211111 1222        378999999988887  569887


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI  178 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  178 (298)
                      -++..+.....-...-...-..--..+..|.+.|+|.+.++.  |+.++-
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            666433221110000011111112467999999999877776  777543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.45  E-value=0.026  Score=44.18  Aligned_cols=151  Identities=9%  Similarity=0.104  Sum_probs=77.1

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCce-----eeeccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTG  136 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  136 (298)
                      ++.+++.|+.+.......+.+||..+.+     .+..+.........+.+  ++++++.|+.+     ..+.+||+.+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            5677777765322234578999987654     22222211112222222  56677777654     357788876532


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                           +..+......... .+++. -++..++.|+.+     ..+.+||+.+.+-.. +..++.... -.+++.. ++  
T Consensus       140 -----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~-~~~~~~~-~~--  207 (301)
T 2vpj_A          140 -----WSMLGDMQTAREG-AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VTPMATKRS-GAGVALL-ND--  207 (301)
T ss_dssp             -----EEEEEECSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-ECCCSSCCB-SCEEEEE-TT--
T ss_pred             -----EEECCCCCCCccc-ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe-CCCCCcccc-cceEEEE-CC--
Confidence                 3333332221111 12222 256677777654     458899988754322 212221111 1222222 33  


Q ss_pred             CCccEEEEeecC-----CcEEEEEeeec
Q 037555          212 KNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       212 ~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                         .+++.|+.+     ..+.+||+.+.
T Consensus       208 ---~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          208 ---HIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ---EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ---EEEEEeCCCCCcccceEEEEeCCCC
Confidence               577777654     46888888654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.34  E-value=0.042  Score=44.16  Aligned_cols=162  Identities=9%  Similarity=0.038  Sum_probs=86.2

Q ss_pred             cEEEEEEcCCCCEEEEE------------eCCCeEEEEEeccCCCCccceeeeEEe----eccCCceEEEEEcc--CCC-
Q 037555          105 TVTQIRFSHDDNLLLSV------------SRDRQFSVFAIQRTGTGEIDYQLIARQ----EAHKRIIWSCSWNP--FGH-  165 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~--~~~-  165 (298)
                      ...++...|+|..++++            ..+|.|.++|+......   ...+...    ....-....+.+.+  ++. 
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            34566677777555554            26899999998743221   1112111    11223566777765  343 


Q ss_pred             EEEEee-C--CCeEEEEEccCCcc-eeeeeecCCC-CCceEEEEEeeccccCCccEEEEeec---C------------Cc
Q 037555          166 EFATGS-R--DKTVKIWAVENKSS-VKQILALPPF-NSSVTALSWVGLDRQKNHGFLAVGME---S------------GV  225 (298)
Q Consensus       166 ~l~~~~-~--dg~i~~wd~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~g~~---d------------g~  225 (298)
                      +|+++. .  +.+|.+|++..... ...+..+.+. -...+.+.+.+++     .+.++...   |            ..
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-----~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-----HFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-----EEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-----CEEecCCcEeCCcccccchhhccCCc
Confidence            444443 2  46788888765422 2222233322 2457889999988     56665431   1            11


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      =.+|.+..+             ......    ..-...+.++|+||++      .++++-+..+.|..|+++
T Consensus       203 g~vyr~d~~-------------~~~~~~----~~l~~pNGia~spDg~------~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          203 SFVTYYSPN-------------DVRVVA----EGFDFANGINISPDGK------YVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEEEECTT-------------CCEEEE----EEESSEEEEEECTTSS------EEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEEECC-------------eEEEee----cCCcccCcceECCCCC------EEEEEeCCCCeEEEEEEC
Confidence            233333221             111111    1223468899999983      445555567888888864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.26  E-value=0.044  Score=42.94  Aligned_cols=150  Identities=9%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccCCCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRTGTG  138 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~  138 (298)
                      ++.+++.|+.+ ...-..+.+||..+.+-.  ..+.........+.+  ++++++.|+.+      ..+.+||+.+..  
T Consensus        55 ~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--  129 (306)
T 3ii7_A           55 DNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--  129 (306)
T ss_dssp             TTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred             CCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence            56677777653 223467889998876432  222211111222222  66677777765      457888877532  


Q ss_pred             ccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                         +..+..+...... .+++. -++..++.|+.         -..+.+||+.+.+-. .+..++. ...-.+++.. .+
T Consensus       130 ---W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~~~~~~~-~~  201 (306)
T 3ii7_A          130 ---WHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIE-ARKNHGLVFV-KD  201 (306)
T ss_dssp             ---EEEECCCSSCCBS-CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSS-CCBSCEEEEE-TT
T ss_pred             ---eEeCCCCcCCcce-eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccc-hhhcceEEEE-CC
Confidence               3333222211111 12222 25666666653         345889998876432 2212221 1111223322 33


Q ss_pred             ccCCccEEEEeecC-----CcEEEEEeeec
Q 037555          210 RQKNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       210 ~~~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                           .+++.|+.+     ..+.+||+.+.
T Consensus       202 -----~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          202 -----KIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             -----EEEEECCEETTEEBCCEEEEETTTT
T ss_pred             -----EEEEEeCCCCCCCCceEEEeeCCCC
Confidence                 566666643     35778887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.25  E-value=0.086  Score=46.03  Aligned_cols=159  Identities=9%  Similarity=-0.043  Sum_probs=99.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRT  135 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  135 (298)
                      ..+..++|++.+..|..+.    ..++.|..++++.......+.........+++.+.+. ++++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD----~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTD----ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEE----CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            4578999999777666654    3478899999875433322332223466888887554 4455555788988887642


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .     ...+  ....-.....+++.|....|+....  .+.|...++....... +  .. .-.....+++++.+.   
T Consensus       113 ~-----~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l--~~-~~~~P~GlalD~~~~---  178 (628)
T 4a0p_A          113 H-----RQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-L--VP-NVGRANGLTIDYAKR---  178 (628)
T ss_dssp             T-----CEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--EC-SCSSEEEEEEETTTT---
T ss_pred             c-----EEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-E--EC-CCCCcceEEEccccC---
Confidence            1     1111  1122344689999996666666653  5678888876544322 1  12 335578999999762   


Q ss_pred             ccEEEEeecCCcEEEEEeeec
Q 037555          214 HGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~  234 (298)
                       .+.++-...+.|..+++...
T Consensus       179 -~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          179 -RLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             -EEEEEETTTTEEEEEETTSC
T ss_pred             -EEEEEECCCCEEEEEcCCCC
Confidence             34444455678888888643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.22  E-value=0.057  Score=43.36  Aligned_cols=163  Identities=12%  Similarity=0.027  Sum_probs=91.7

Q ss_pred             ceEEEEEcCCCCEEEeEeccC-------CCCceEEEEEEcCC--ceeee-cccc-----ccccEEEEEEcC--CCC-EEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQ-------STAAAEIWLWEVGS--WKAMG-RLQS-----HSLTVTQIRFSH--DDN-LLL  119 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~-------~~~d~~i~vw~~~~--~~~~~-~~~~-----~~~~v~~~~~~~--~~~-~l~  119 (298)
                      ..-.+...|+|..+++++.-.       ...+|.|.++|.++  .+... .+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            445666788776655542100       01488999999873  22211 1222     234567777755  454 344


Q ss_pred             EE-eC--CCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeC-----------------CCeEEE
Q 037555          120 SV-SR--DRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSR-----------------DKTVKI  178 (298)
Q Consensus       120 ~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~~  178 (298)
                      ++ ..  +..|.+|++......   ...+..+... -...+.+.+.++|+++++...                 .|.|.-
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~---~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKS---LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE---EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCE---EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            44 33  568889988764321   2333343322 235789999999987776541                 244555


Q ss_pred             EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +|.  ++. .   .+...-...+.++|+|++.    .+.++-+..+.|..|++..
T Consensus       208 ~d~--~~~-~---~~~~~l~~pNGia~spDg~----~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          208 YSP--NDV-R---VVAEGFDFANGINISPDGK----YVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             ECT--TCC-E---EEEEEESSEEEEEECTTSS----EEEEEEGGGTEEEEEEECT
T ss_pred             EEC--CeE-E---EeecCCcccCcceECCCCC----EEEEEeCCCCeEEEEEECC
Confidence            544  222 2   1111224568999999983    3444445678999999863

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.19  E-value=0.00058  Score=60.46  Aligned_cols=182  Identities=8%  Similarity=-0.084  Sum_probs=96.4

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW  160 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  160 (298)
                      ...|++.++.+.+....+.. ...+..++|++.+..|+.+ ...+.|+.+++.......   .....+.........|++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~---~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C---CCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc---ceEEEEeCCCCCcceEEE
Confidence            45788888876655444443 2346688999866666555 446788888876411000   001111111123456788


Q ss_pred             ccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeeccccc
Q 037555          161 NPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTND  238 (298)
Q Consensus       161 ~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~  238 (298)
                      .+.+..| ++-...+.|.++++.......   .+.........+++.|.+.    .++++-... +.|.++++.....  
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g----~ly~td~~~~~~I~~~~~dG~~~--  531 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHG----FMYWTDWGTPAKIKKGGLNGVDI--  531 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSS----CCEECCCSSSCCEEBCCSSSCCC--
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCC----cEEEcccCCCCeEEEEeCCCCCe--
Confidence            7644444 444456889999987543322   2222234467888988652    333333222 6777776643211  


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                                  ..+.  ...-...+.|+|+|++.      .++++-+..+.|..+++
T Consensus       532 ------------~~l~--~~~l~~PnGlavd~~~~------~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          532 ------------YSLV--TENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             ------------CEES--CSSCSSCCCEEECTTTC------CEEEEETTTTEEEEECS
T ss_pred             ------------eEEE--eCCCCCccEEEEeccCC------EEEEEecCCCeEEEEcc
Confidence                        1110  01123456788887652      45555555667776665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.01  E-value=0.091  Score=41.90  Aligned_cols=167  Identities=10%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             CceEEEEEcCC----CCE--EEeEeccCCCC--ceEEEEEEcC--Cceeeecccc------cc-ccEEEEEE--cCC-CC
Q 037555           57 NELFSLCCDHQ----GKL--VASSCKAQSTA--AAEIWLWEVG--SWKAMGRLQS------HS-LTVTQIRF--SHD-DN  116 (298)
Q Consensus        57 ~~v~~~~~s~~----~~~--l~~~~~~~~~~--d~~i~vw~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~  116 (298)
                      +.++.+..-|.    |+.  ++.++.   ..  +++|.+|++.  +++ +..+..      .. ..+..+++  +|. +.
T Consensus        68 g~~nnVD~r~~~~l~g~~~dla~as~---R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~  143 (355)
T 3amr_A           68 GKLNNVDIRYDFPLNGKKVDIAAASN---RSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGK  143 (355)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEE---CSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCC
T ss_pred             CCcccEEEecccccCCceEeEEEEeC---CCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCc
Confidence            45666666552    222  344432   34  6789999773  332 333311      11 45666777  674 44


Q ss_pred             -EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc--ceeeeeec
Q 037555          117 -LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS--SVKQILAL  193 (298)
Q Consensus       117 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~  193 (298)
                       ++++...+|.+..|++.....+....+.++.+.. .+.+..+...+....|+.+-.+.-|..++.+...  ....+..+
T Consensus       144 ~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~  222 (355)
T 3amr_A          144 YYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA  222 (355)
T ss_dssp             EEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred             EEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe
Confidence             6888888999999999754443333566777664 4678899999988999999998777666754211  11112122


Q ss_pred             --CCCCCceEEEEEee--ccccCCccEEEEee-cCCcEEEEEee
Q 037555          194 --PPFNSSVTALSWVG--LDRQKNHGFLAVGM-ESGVIELWSIS  232 (298)
Q Consensus       194 --~~~~~~v~~~~~~~--~~~~~~~~~l~~g~-~dg~i~vwd~~  232 (298)
                        ......+..|++.+  ++.    .+|++++ .+..+.+||..
T Consensus       223 ~~g~l~aDvEGLai~~~~~g~----gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          223 DGRHLTRDIEGLTIYYAADGK----GYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             SSSSBCSCEEEEEEEECGGGC----EEEEEEEGGGTEEEEEESS
T ss_pred             cCCccccCcceEEEEecCCCC----EEEEEEcCCCCEEEEEECC
Confidence              22335688888854  331    3566666 56799999986

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.99  E-value=0.08  Score=41.56  Aligned_cols=151  Identities=12%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CCCEEEeEec----cCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccC
Q 037555           67 QGKLVASSCK----AQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRT  135 (298)
Q Consensus        67 ~~~~l~~~~~----~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  135 (298)
                      ++.+++.|+.    +.......+.+||+.+.+-..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777754    111112468889987654322  22211112222223  56677776643     35778887653


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      .     +..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+.+-.. +..++.... -.+++.. ++ 
T Consensus       148 ~-----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~-~~~~~~~-~~-  216 (308)
T 1zgk_A          148 E-----WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRS-GAGVCVL-HN-  216 (308)
T ss_dssp             E-----EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCB-SCEEEEE-TT-
T ss_pred             e-----EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCCCccc-cceEEEE-CC-
Confidence            2     2322222211111122222  56677777654     458899987654321 112221111 1222222 33 


Q ss_pred             cCCccEEEEeecC-----CcEEEEEeeec
Q 037555          211 QKNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                          .+++.|+.+     ..+.+||+.+.
T Consensus       217 ----~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          217 ----CIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             ----EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ----EEEEEeCCCCCCccceEEEEeCCCC
Confidence                577777654     46888887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.86  E-value=0.13  Score=41.33  Aligned_cols=114  Identities=10%  Similarity=0.086  Sum_probs=64.0

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eecc---ccccccEEEEEEcCC---CCEEEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRL---QSHSLTVTQIRFSHD---DNLLLS  120 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~l~~  120 (298)
                      +..+...-.....++|.|+|+++++-      ..+.|++++  .++.  +..+   .........++|+|+   +..|..
T Consensus        23 ~~~va~~l~~P~~ia~~pdG~l~V~e------~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv   94 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDGGMLIAE------RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA   94 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTSCEEEEE------TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEe------CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence            33443334567899999999966654      258899998  3332  2211   122456789999998   444444


Q ss_pred             EeC-C-----CeEEEEEeccCCCCccceeeeEEee---ccCCceEEEEEccCCCEEEEee
Q 037555          121 VSR-D-----RQFSVFAIQRTGTGEIDYQLIARQE---AHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       121 ~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      +.. .     +.|..++...... ......+..+.   ........++|.|++.++++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEecCCCCCccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            433 2     5677777653210 00011122222   1112236899999997666643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.83  E-value=0.019  Score=49.69  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      .+.+++.++.||.++.||.++++.+..+..-.+  ....-+.+..++.    .++++.+.
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g--~~a~P~~y~~~G~----qYv~~~~G  549 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG--IVSPPITWEQDGE----QYLGVTVG  549 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTE----EEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCC--cccCceEEEECCE----EEEEEEcc
Confidence            466788899999999999999998875432111  1112255556663    45555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.82  E-value=0.12  Score=40.39  Aligned_cols=106  Identities=6%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccc
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEID  141 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~  141 (298)
                      +.+++.|+.   .....+.+||..+.+-.  ..+.........+.+  ++.+++.|+.+    ..+.+||+.+..     
T Consensus        12 ~~l~~~GG~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~-----   81 (306)
T 3ii7_A           12 DYRIALFGG---SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS-----   81 (306)
T ss_dssp             CEEEEEECC---SSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE-----
T ss_pred             ceEEEEeCC---CCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe-----
Confidence            345666654   22567889998876532  222211112222222  56677777754    567888877542     


Q ss_pred             eeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCc
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKS  185 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~  185 (298)
                      +..+..+......-..+.+  ++..++.|+.+      ..+.+||..+.+
T Consensus        82 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           82 WYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             EEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             EEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            3333322221111122222  56677777654      458899988765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.80  E-value=0.35  Score=45.48  Aligned_cols=176  Identities=11%  Similarity=0.136  Sum_probs=104.4

Q ss_pred             eEEEEEEcCCceeeeccc-cccccEEEEE---EcCC-CCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEE
Q 037555           83 AEIWLWEVGSWKAMGRLQ-SHSLTVTQIR---FSHD-DNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIAR  147 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~-~~~~~v~~~~---~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  147 (298)
                      +.|++.|..+.+.+..+. .....+.+++   |..+ ..++++|+          ..|.|.+|++...+     .+.+..
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-----L~lv~~  881 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-----LQTVAE  881 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-----EEEEEE
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-----EEEEEE
Confidence            457788877777665543 1234445554   3322 35788776          35889999997321     333333


Q ss_pred             eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                       ...++++++++-- +| +|++|- ..+|++|++...+.+......  .. .+..+.....+     ++++.|..-..|.
T Consensus       882 -~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~--~~-~i~~~~l~~~~-----~~I~vgD~~~Sv~  949 (1158)
T 3ei3_A          882 -KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH--YN-NIMALYLKTKG-----DFILVGDLMRSVL  949 (1158)
T ss_dssp             -EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE--CC-CSCEEEEEEET-----TEEEEEESSBCEE
T ss_pred             -EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec--cc-cEEEEEEeccC-----CEEEEEEhhheEE
Confidence             2357888888644 35 455444 478999999866544311111  11 13333333344     6899998877888


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ++.++...            ..+..+. -.-+...++++.+-.++        .++.+..+|.|.+...
T Consensus       950 ~~~y~~~~------------~~L~~~a-~D~~~~~vta~~~ld~~--------t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          950 LLAYKPME------------GNFEEIA-RDFNPNWMSAVEILDDD--------NFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEEEETTT------------TEEEEEE-ECCSCBCEEEEEEEETT--------EEEEEETTSEEEEEEE
T ss_pred             EEEEEcCC------------CeEEEEE-eecccccEEEEEEEccC--------cEEEEcCCCcEEEEec
Confidence            88766431            2223222 12245678888887665        6677888898888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.80  E-value=0.13  Score=40.37  Aligned_cols=150  Identities=12%  Similarity=0.042  Sum_probs=73.0

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeC----C-----CeEEEEEeccC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSR----D-----RQFSVFAIQRT  135 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~  135 (298)
                      ++.+++.|+.. ...-..+.+||..+.+-..  .+.........+.+  ++.+++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBS-SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcC-CCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            56677777641 1223568899987665332  22211111122222  5667777665    2     35778887653


Q ss_pred             CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      .     +..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+.+-.. +..++..... .+++.. ++ 
T Consensus       101 ~-----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~-~~-  169 (308)
T 1zgk_A          101 Q-----WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPMLTRRIG-VGVAVL-NR-  169 (308)
T ss_dssp             E-----EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE-CCCCSSCCBS-CEEEEE-TT-
T ss_pred             e-----EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE-CCCCCccccc-eEEEEE-CC-
Confidence            2     2222222211111122222  56666776643     358889987654322 1122211111 222222 33 


Q ss_pred             cCCccEEEEeecC-----CcEEEEEeeec
Q 037555          211 QKNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       211 ~~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                          .+++.|+.+     ..+.+||+.+.
T Consensus       170 ----~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          170 ----LLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             ----EEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             ----EEEEEeCCCCCCcCceEEEEeCCCC
Confidence                566676654     45788887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.73  E-value=0.088  Score=41.06  Aligned_cols=151  Identities=9%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCCc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTGE  139 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  139 (298)
                      ++++++.|+.+.......+.+||+.+.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+..   
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~---  186 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH---  186 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE---
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc---
Confidence            567777776543222457899998765432  222211111122222  66777777654     457788876532   


Q ss_pred             cceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                        +..+..+.........+.+  ++..++.|+.+     ..+.+||+.+.+-. .+..++..... .+++.. ++     
T Consensus       187 --W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~-~~~~~~-~~-----  254 (301)
T 2vpj_A          187 --WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPRCY-VGATVL-RG-----  254 (301)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCCBS-CEEEEE-TT-----
T ss_pred             --EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcccc-eeEEEE-CC-----
Confidence              3333222211111122222  56677777653     46899999876532 22222211111 222222 33     


Q ss_pred             cEEEEeecC-----CcEEEEEeeec
Q 037555          215 GFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       215 ~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                      .+++.|+.+     ..|.+||..+.
T Consensus       255 ~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          255 RLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEEEEcCcCCCcccccEEEEcCCCC
Confidence            567777654     35667776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.22  Score=41.89  Aligned_cols=124  Identities=6%  Similarity=0.063  Sum_probs=70.8

Q ss_pred             ceEEEEE-------cCCCCEEEeEeccCCC--CceEEEEEEcCC-ceee-----eccccccccEEEEEEcC-CCCEEEEE
Q 037555           58 ELFSLCC-------DHQGKLVASSCKAQST--AAAEIWLWEVGS-WKAM-----GRLQSHSLTVTQIRFSH-DDNLLLSV  121 (298)
Q Consensus        58 ~v~~~~~-------s~~~~~l~~~~~~~~~--~d~~i~vw~~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~  121 (298)
                      ....++|       ++++..|+++......  ....|.+.+... +...     ..+... .....++++| ++.++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence            5889999       9999966666431100  123466665433 2221     122211 2345778899 45566666


Q ss_pred             eCCCeEEEEEec-------cCCCCcc---c----eeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC
Q 037555          122 SRDRQFSVFAIQ-------RTGTGEI---D----YQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN  183 (298)
Q Consensus       122 ~~dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~  183 (298)
                      ..++.|..+|+.       .......   .    ...+... ........++|+|++++|+.+. ....|+.++...
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            678889999987       3321000   0    0111111 1233457899999999665554 567888866543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.66  E-value=0.073  Score=41.58  Aligned_cols=151  Identities=15%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC-------CeEEEEEeccCCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD-------RQFSVFAIQRTGT  137 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~  137 (298)
                      ++.+++.|+.+....-..+.+||+.+.+-.  ..+.........+.+  ++++++.|+.+       ..+.+||+.+.. 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE-  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE-
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc-
Confidence            567777777533222356888998765432  222211111122222  56666766543       347788876532 


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK  212 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (298)
                          +..+.......... ++... ++.+++.|+.+     ..+.+||+.+.+-. .+..+..... -.+++.. ++   
T Consensus       185 ----W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~-~~~~~~~-~~---  252 (302)
T 2xn4_A          185 ----WTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRR-NAGVCAV-NG---  252 (302)
T ss_dssp             ----EEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCB-SCEEEEE-TT---
T ss_pred             ----EEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccc-cCeEEEE-CC---
Confidence                33332222111111 22222 56777777654     36889999875432 2222221111 1122222 33   


Q ss_pred             CccEEEEeecCC-----cEEEEEeeec
Q 037555          213 NHGFLAVGMESG-----VIELWSISVN  234 (298)
Q Consensus       213 ~~~~l~~g~~dg-----~i~vwd~~~~  234 (298)
                        .+++.|+.++     .+.+||+.+.
T Consensus       253 --~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          253 --LLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             --EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             --EEEEECCcCCCcccccEEEEcCCCC
Confidence              5777776543     4788887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.56  E-value=0.22  Score=39.89  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=68.1

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eec----cccccccEEEEEEcCC----CCEE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGR----LQSHSLTVTQIRFSHD----DNLL  118 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~----~~~l  118 (298)
                      +..+...-.....|+|.|+|+++++-     ...|.|++++...++.  +..    +.........++++|+    +.+.
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVte-----r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSS-----RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEE-----ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence            44455555678899999999988877     3378999998665543  221    1234567899999995    4343


Q ss_pred             EEEe--CCCeEEEEEeccCC----CCccceeeeEEee-ccCCceEEEEEccCCCEEEEee
Q 037555          119 LSVS--RDRQFSVFAIQRTG----TGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       119 ~~~~--~dg~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      ++-+  .++.|.-|.+....    .......++..+. .....-..|.|.|++.++++.+
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            4322  34455555554311    0000011122222 1112346799999998777754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.52  E-value=0.24  Score=39.84  Aligned_cols=109  Identities=8%  Similarity=0.074  Sum_probs=58.3

Q ss_pred             CCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeec---c----ccccccEEEEEEcCC---CCEEEEE-eC
Q 037555           56 GNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGR---L----QSHSLTVTQIRFSHD---DNLLLSV-SR  123 (298)
Q Consensus        56 ~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~-~~  123 (298)
                      -.....|+|.|+|+ ++++-      ..+.|++++.. ++....   +    .........++++|+   +..|..+ +.
T Consensus        17 l~~P~~i~~~pdG~~l~V~e------~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~   89 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITL------RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE   89 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEE------TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEe------CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence            34578999999999 66554      26889999854 332211   1    122346789999995   4444433 32


Q ss_pred             -------CCeEEEEEeccCCCCccceeee-EEeec---cCCceEEEEEccCCCEEEEee
Q 037555          124 -------DRQFSVFAIQRTGTGEIDYQLI-ARQEA---HKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       124 -------dg~i~iwd~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~  171 (298)
                             ...|..+++..........+.+ ..+..   ....-..+.|.|++.++++.+
T Consensus        90 ~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           90 VGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             ECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             CCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence                   2345556654321110001111 11110   111235799999996555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.51  E-value=0.29  Score=40.86  Aligned_cols=117  Identities=8%  Similarity=-0.019  Sum_probs=64.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccc------cccccEEEEEEcCC---CCEE
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQ------SHSLTVTQIRFSHD---DNLL  118 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~------~~~~~v~~~~~~~~---~~~l  118 (298)
                      ..+...-.....|+|.|+|+++++-     ...+.|++++..+++.  +..+.      .....+..++|+|+   +..|
T Consensus        20 ~~~a~~l~~P~~~a~~pdG~l~V~e-----~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           20 KVILSNLNKPHALLWGPDNQIWLTE-----RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             EEEECCCCCceEEEEcCCCcEEEEE-----cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            3343334567799999999988876     2245788887654432  22222      12456789999995   4444


Q ss_pred             EEEe-C------------CCeEEEEEeccCCCCccceeeeE-Eeec-cCCceEEEEEccCCCEEEEee
Q 037555          119 LSVS-R------------DRQFSVFAIQRTGTGEIDYQLIA-RQEA-HKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       119 ~~~~-~------------dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      ..+. .            ...|.-++...........+.+. .+.. .......|+|.|++.++++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            4433 2            13455555543211100011121 1211 123468899999998777654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.47  E-value=0.39  Score=41.92  Aligned_cols=157  Identities=10%  Similarity=-0.007  Sum_probs=93.5

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCC-EEEEEeCCCeEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDN-LLLSVSRDRQFSV  129 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i  129 (298)
                      ..+.+++|.+....|..+-    ...+.|+.++.+.......+..      ....+..+++...+. +..+-+..+.|.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD----~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v  415 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWID----SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV  415 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEecCCCeEEEEe----cCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEE
Confidence            4577899988766666653    2367888888764332222221      233578999988655 4556666788988


Q ss_pred             EEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEee-CCC--eEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555          130 FAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGS-RDK--TVKIWAVENKSSVKQILALPPFNSSVTALSW  205 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~  205 (298)
                      .+++.        .....+ .........|++.|...+|+... ...  .|...++..... ..+  ....-.....+++
T Consensus       416 ~~~~G--------~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l--~~~~l~~P~gla~  484 (628)
T 4a0p_A          416 TRLDG--------RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL--FFSGLSKPIALAL  484 (628)
T ss_dssp             EETTS--------CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE--ECSSCSCEEEEEE
T ss_pred             EECCC--------CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE--EeccCCCccEEEE
Confidence            88763        222222 22345678999999544444443 222  566666654332 212  1222345689999


Q ss_pred             eeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555          206 VGLDRQKNHGFLAVG-MESGVIELWSISV  233 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g-~~dg~i~vwd~~~  233 (298)
                      .+..     ..|..+ ...+.|..+++..
T Consensus       485 D~~~-----~~LYw~D~~~~~I~~~~~dG  508 (628)
T 4a0p_A          485 DSRL-----GKLFWADSDLRRIESSDLSG  508 (628)
T ss_dssp             ETTT-----TEEEEEETTTTEEEEEETTS
T ss_pred             eCCC-----CEEEEEeCCCCEEEEEeCCC
Confidence            9876     345544 4457888888754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.45  E-value=0.61  Score=43.87  Aligned_cols=227  Identities=10%  Similarity=0.026  Sum_probs=118.6

Q ss_pred             CCCCceEEec-cCCCceEEEEE---cCC-CCEEEeEecc-----CCCCceEEEEEEcCCceeeecc-ccccccEEEEEEc
Q 037555           44 TLWPESHKLY-GHGNELFSLCC---DHQ-GKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRL-QSHSLTVTQIRFS  112 (298)
Q Consensus        44 ~~~~~~~~~~-~h~~~v~~~~~---s~~-~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~  112 (298)
                      ..|..+..+. .....+.|++.   ..+ ..+|++|..-     .....|.|.+|++..++..... ....++|++++--
T Consensus       815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~  894 (1158)
T 3ei3_A          815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF  894 (1158)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE
T ss_pred             CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee
Confidence            3455444433 22234555553   322 4678777531     1124689999999744332221 1245678887644


Q ss_pred             CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeee
Q 037555          113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQIL  191 (298)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~  191 (298)
                       +|.++++.  ...|++|++...+.    ..  ........ |..+.....++++++|..-..|.++..+... .+..+ 
T Consensus       895 -~g~Lla~i--g~~l~vy~l~~~~~----L~--~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~-  963 (1158)
T 3ei3_A          895 -NGKLLASI--NSTVRLYEWTTEKE----LR--TECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI-  963 (1158)
T ss_dssp             -TTEEEEEE--TTEEEEEEECTTSC----EE--EEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE-
T ss_pred             -CCEEEEEc--CCEEEEEECCCCce----EE--EEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE-
Confidence             45444333  57899999975321    11  11111111 2222333357899999877777766554322 22222 


Q ss_pred             ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE---e
Q 037555          192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA---W  268 (298)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~  268 (298)
                      .-......++++.+-.++      .++.+..+|.|.+..........   ...........++    ....|+++.   +
T Consensus       964 a~D~~~~~vta~~~ld~~------t~l~aD~~gNl~vl~~~~~~~~~---~~~~~L~~~~~fh----lG~~vt~~~~~sl 1030 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD------NFLGAENAFNLFVCQKDSAATTD---EERQHLQEVGLFH----LGEFVNVFCHGSL 1030 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT------EEEEEETTSEEEEEEECTTCCST---TGGGBEEEEEEEE----CSSCEEEEEECCS
T ss_pred             EeecccccEEEEEEEccC------cEEEEcCCCcEEEEecCCCCCCc---cccceeeeEEEEe----CCCcEeeEEeeee
Confidence            223356678888887654      67888999999999876531110   0001111222222    244566665   2


Q ss_pred             ecCCC--CCCCcceEEEeeeCCCcEEEe
Q 037555          269 KTHEK--PKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       269 ~~~~~--~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      .+.+.  ........++.++.+|.|-+.
T Consensus      1031 ~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1031 VMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             CCC-------CEEEEEEEEETTSCEEEE
T ss_pred             ecCCCccccccccceEEEEecCCEEEEE
Confidence            32210  000112567888889988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.38  E-value=0.45  Score=41.50  Aligned_cols=157  Identities=10%  Similarity=-0.035  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      .+.+++|.+.+..|..+.    ...+.|+.++++.......+...-.....+++.+ .+++.++-+..+.|.+.++....
T Consensus       350 ~~~~ld~d~~~~~ly~sD----~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTD----DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             SEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccEEEEEEcCCCeEEEEe----CCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            466888887555555543    2367888888764333222322234566888886 44555555667889988876421


Q ss_pred             CCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          137 TGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                              ...+ ...-.....+++.|....|+....  .+.|...++....... +  ....-.....+++.+..    
T Consensus       426 --------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~-l--~~~~l~~P~GlalD~~~----  490 (619)
T 3s94_A          426 --------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV-L--VNTSLGWPNGLALDYDE----  490 (619)
T ss_dssp             --------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSCEEEEEEETTT----
T ss_pred             --------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE-E--EeCCCCCCeeeEEcccC----
Confidence                    1122 222345689999997555655543  3667777776433222 1  12233567899999866    


Q ss_pred             ccEEEEe-ecCCcEEEEEeeec
Q 037555          214 HGFLAVG-MESGVIELWSISVN  234 (298)
Q Consensus       214 ~~~l~~g-~~dg~i~vwd~~~~  234 (298)
                       ..|..+ ...+.|..+++...
T Consensus       491 -~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          491 -GKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             -TEEEEEETTTTEEEEEESSSC
T ss_pred             -CEEEEEECCCCEEEEEecCCC
Confidence             344444 45577888887543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.35  E-value=0.3  Score=39.20  Aligned_cols=67  Identities=10%  Similarity=0.061  Sum_probs=37.7

Q ss_pred             CCceEEEEEcCC---CCEEEeEeccCC-CCceEEEEEEcCCc-----eee-eccc---cccccEEEEEEcCCCCEEEEEe
Q 037555           56 GNELFSLCCDHQ---GKLVASSCKAQS-TAAAEIWLWEVGSW-----KAM-GRLQ---SHSLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        56 ~~~v~~~~~s~~---~~~l~~~~~~~~-~~d~~i~vw~~~~~-----~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  122 (298)
                      ......|+|+|+   +..|.++..... .....|..++...+     +.+ ..+.   ........++|.|||.+.++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            356889999998   555555432000 00167888887643     111 1122   1112236899999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.01  E-value=0.68  Score=41.00  Aligned_cols=157  Identities=11%  Similarity=0.097  Sum_probs=81.2

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceee--e-c-----cccccccEEEEEEcCCCCEEEEEeCCC------eEEEEE
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--G-R-----LQSHSLTVTQIRFSHDDNLLLSVSRDR------QFSVFA  131 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd  131 (298)
                      .++.+++.|+.+. ..-..+.+||..+++-.  . .     +......-..+.+..++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            4677888886532 23456888998765432  2 1     111111122233322677777776543      477788


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEEccCCcceeeeee---cCCCCCceEEEEEe
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWAVENKSSVKQILA---LPPFNSSVTALSWV  206 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~---~~~~~~~v~~~~~~  206 (298)
                      ..+..     +..+..+..... -.+++...++..++.|+.++  .+.+||..+..-.. +..   .+.......++.+.
T Consensus       475 ~~t~~-----W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          475 MKTRE-----WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTTTE-----EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGSCCBSCEEEEE
T ss_pred             CCCCc-----EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCcccceeEEEEe
Confidence            76532     333322221111 12233323677888887644  68999998754322 111   11111222334555


Q ss_pred             ec-cccCCccEEEEeec--C-----CcEEEEEeeecc
Q 037555          207 GL-DRQKNHGFLAVGME--S-----GVIELWSISVNR  235 (298)
Q Consensus       207 ~~-~~~~~~~~l~~g~~--d-----g~i~vwd~~~~~  235 (298)
                      .. +     .+++.|+.  +     ..+.+||+.+..
T Consensus       548 ~~~~-----~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          548 PVSK-----QGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTT-----EEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCC-----EEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            43 3     57777765  2     458888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.83  E-value=0.49  Score=37.08  Aligned_cols=153  Identities=7%  Similarity=0.013  Sum_probs=73.7

Q ss_pred             cCCCCEEEeEecc----C--CCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC--------CeEE
Q 037555           65 DHQGKLVASSCKA----Q--STAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD--------RQFS  128 (298)
Q Consensus        65 s~~~~~l~~~~~~----~--~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~  128 (298)
                      ..++.+++.|+..    .  ......+.+||..+.+-..  .+.........+.+  ++.+++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            4577888888731    0  0112348888987765322  22211111112222  56666776632        3577


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-----CeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-----KTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      +||+.+..     +..+..+...... .+++. -++..++.|+. +     ..+.+||..+.+-.. +..++. ...-.+
T Consensus       121 ~~d~~~~~-----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~-~r~~~~  191 (315)
T 4asc_A          121 CYDRLSFK-----WGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQT-ARSLFG  191 (315)
T ss_dssp             EEETTTTE-----EEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSS-CCBSCE
T ss_pred             EECCCCCc-----EeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCC-chhceE
Confidence            88876532     3333222211111 12222 35667777765 2     458899988754322 112221 111122


Q ss_pred             EEEeeccccCCccEEEEeecCC-----cEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLAVGMESG-----VIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~  234 (298)
                      ++.. ++     .+++.|+.++     .+.+||+.+.
T Consensus       192 ~~~~-~~-----~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          192 ATVH-DG-----RIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEE-TT-----EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEEE-CC-----EEEEEeccCCCCccceEEEEECCCC
Confidence            2222 33     5667766543     4677777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.18  E-value=0.97  Score=36.27  Aligned_cols=115  Identities=8%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeecc---ccccccEEEEEEcCC---CCEEEEEe
Q 037555           50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRL---QSHSLTVTQIRFSHD---DNLLLSVS  122 (298)
Q Consensus        50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~  122 (298)
                      ..+...-.....++|.|+|+++++-      .++.|++++. +++ .+..+   .........++++|+   +..|.++.
T Consensus        22 ~~va~~l~~P~~ia~~pdG~l~V~e------~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLGGGRYLVTE------RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEECSCSCEEEEEEEETTEEEEEE------TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEeCCCCCCeEEEEcCCCeEEEEe------CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            3333334567899999999866654      2588998874 444 22211   122356889999997   44444433


Q ss_pred             C----C----CeEEEEEeccCCCCccceee-eEEeec-cCCceEEEEEccCCCEEEEee
Q 037555          123 R----D----RQFSVFAIQRTGTGEIDYQL-IARQEA-HKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       123 ~----d----g~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      .    +    ..|..|+...........+. +..+.. .......++|.|++.++++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            2    3    56777776542111000111 111221 112346799999998766643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.04  E-value=0.92  Score=40.17  Aligned_cols=157  Identities=11%  Similarity=0.196  Sum_probs=82.0

Q ss_pred             CCCEEEeEeccCCC-CceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccc
Q 037555           67 QGKLVASSCKAQST-AAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEID  141 (298)
Q Consensus        67 ~~~~l~~~~~~~~~-~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  141 (298)
                      ++++++.|+.+... .-..+.+||..+.+-  +..+...... .+++...++++++.|+.++  .+.+||..+..     
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-----  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-----  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-----
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-----
Confidence            67788888764321 124688999887543  2222211111 2233323778888887654  68888887643     


Q ss_pred             eeeeEE---eeccCCceEEEEEccC-CCEEEEeeC--C-----CeEEEEEccCCcc-----eeeeeecCCCCCceEEEEE
Q 037555          142 YQLIAR---QEAHKRIIWSCSWNPF-GHEFATGSR--D-----KTVKIWAVENKSS-----VKQILALPPFNSSVTALSW  205 (298)
Q Consensus       142 ~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~~wd~~~~~~-----~~~~~~~~~~~~~v~~~~~  205 (298)
                      +..+..   .......-..+.+..+ +..++.|+.  +     ..+.+||+.+...     ...+...+.....-.+++.
T Consensus       525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~  604 (695)
T 2zwa_A          525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY  604 (695)
T ss_dssp             EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred             eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence            333322   1111222233455544 566777765  2     4588999988762     2222121111111223333


Q ss_pred             eeccccCCccEEEEeec--------CCcEEEEEeeec
Q 037555          206 VGLDRQKNHGFLAVGME--------SGVIELWSISVN  234 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~--------dg~i~vwd~~~~  234 (298)
                      ..++     .+++.|+.        ...|.+||+.+.
T Consensus       605 ~~~~-----~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          605 ITPR-----KLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EETT-----EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             eCCC-----EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            3324     56777764        345888888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.85  E-value=1.2  Score=35.56  Aligned_cols=56  Identities=5%  Similarity=0.007  Sum_probs=28.4

Q ss_pred             CCCEEEeEec-cC----CCCceEEEEEEcCCceeee--ccc-cccccEEEEEEcCCCCEEEEEeCC
Q 037555           67 QGKLVASSCK-AQ----STAAAEIWLWEVGSWKAMG--RLQ-SHSLTVTQIRFSHDDNLLLSVSRD  124 (298)
Q Consensus        67 ~~~~l~~~~~-~~----~~~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d  124 (298)
                      ++++++.|+. +.    ...-..+.+||+.+.+-..  .+. .......++.  .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5677777754 10    0112468899987764322  222 1111122222  467777888754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.80  E-value=1.2  Score=35.48  Aligned_cols=95  Identities=9%  Similarity=0.061  Sum_probs=47.0

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCC--c--eeeeccc-cccccEEEEEEcCCCCEEEEEeC-C---------CeEEEEE
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGS--W--KAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSR-D---------RQFSVFA  131 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~--~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd  131 (298)
                      ++.+++.|+.+    ...+.+||+.+  .  +.+..+. ........+.+  ++++++.|+. +         ..+.+||
T Consensus        19 ~~~iyv~GG~~----~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd   92 (357)
T 2uvk_A           19 NDTVYIGLGSA----GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN   92 (357)
T ss_dssp             TTEEEEECGGG----TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEE
T ss_pred             CCEEEEEeCcC----CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEe
Confidence            56677777652    34788999863  2  2232222 11111222223  5667777765 2         3577888


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD  173 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (298)
                      +.+..     +..+....+....-.+++. .++..++.|+.+
T Consensus        93 ~~~~~-----W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           93 PKTNS-----WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTTTE-----EEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCCCc-----EEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            77533     3333222211111122222 467777777754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.66  E-value=1.2  Score=34.85  Aligned_cols=110  Identities=9%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             CCCEEEeEeccC--CCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeC------CCeEEEEEeccCC
Q 037555           67 QGKLVASSCKAQ--STAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSR------DRQFSVFAIQRTG  136 (298)
Q Consensus        67 ~~~~l~~~~~~~--~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~  136 (298)
                      ++++++.|+.+.  ...-..+.+||..+.+-..  .+.........+.  .++++++.|+.      -..+.+||+.+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            567777776531  1123568889987654322  2221111111222  36667677664      2358888887643


Q ss_pred             CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCc
Q 037555          137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKS  185 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  185 (298)
                           +..+......... .+++.. ++..++.|+.+     ..+.+||+.+.+
T Consensus       187 -----W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          187 -----WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             -----EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             -----EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence                 3333222211111 122222 56677777643     347788987754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.40  E-value=1.6  Score=35.02  Aligned_cols=205  Identities=14%  Similarity=0.078  Sum_probs=97.7

Q ss_pred             CceEEEEEcCC---CCEEEeEeccCCCCc----eEEEEEEcCCc-------eee-ecccc-ccccEEEEEEcCCCCEEEE
Q 037555           57 NELFSLCCDHQ---GKLVASSCKAQSTAA----AEIWLWEVGSW-------KAM-GRLQS-HSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        57 ~~v~~~~~s~~---~~~l~~~~~~~~~~d----~~i~vw~~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~  120 (298)
                      .....|+++|+   +..|.++.... ..+    ..|..++....       +.+ ..+.. .......++|.|||.++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~-~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYF-AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEE-CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEecc-CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            46889999997   44554442100 012    67777876543       111 11221 1112467999999987777


Q ss_pred             EeCC-------------CeEEEEEeccCCCCccce---eeeEEeeccCCceEEEEEcc-CCCEEEEeeCCC---eEEEEE
Q 037555          121 VSRD-------------RQFSVFAIQRTGTGEIDY---QLIARQEAHKRIIWSCSWNP-FGHEFATGSRDK---TVKIWA  180 (298)
Q Consensus       121 ~~~d-------------g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~~wd  180 (298)
                      .+..             |.|.-++...  ......   .......++. ....++|+| +++++++-....   .|.+. 
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG--~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i-  227 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEG--RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNII-  227 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTS--CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEE-
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCC--CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEe-
Confidence            5432             3444444321  100000   0011112333 346799999 566554433221   23332 


Q ss_pred             ccCCcc---------------eeeeeecCCCCCceEEEEEeeccc--cCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555          181 VENKSS---------------VKQILALPPFNSSVTALSWVGLDR--QKNHGFLAVGMESGVIELWSISVNRTNDVSTPA  243 (298)
Q Consensus       181 ~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  243 (298)
                       ..+..               ...+..+.........++|.....  ...+.++++....+.|...++......      
T Consensus       228 -~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------  300 (354)
T 3a9g_A          228 -LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------  300 (354)
T ss_dssp             -CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE------
T ss_pred             -cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc------
Confidence             21110               011112211223467777743211  012256666666677888887643110      


Q ss_pred             CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                          .....+  +.+-...+..+++.||+       .++++..
T Consensus       301 ----~~~~~~--~~~~~~rp~~v~~~pDG-------~lyv~~~  330 (354)
T 3a9g_A          301 ----RKISTF--FKNVFGRLRDVVIDDDG-------GILISTS  330 (354)
T ss_dssp             ----EEEEEE--CTTTSCCEEEEEECTTS-------CEEEEEC
T ss_pred             ----cceeee--ccCCCCCeeEEEECCCC-------cEEEEEe
Confidence                111122  11224578999999999       6666553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.31  E-value=2.3  Score=40.80  Aligned_cols=204  Identities=10%  Similarity=0.109  Sum_probs=113.7

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccc
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (298)
                      .-.+|..+.+|.-.      ..++.|+|+++...++.+. ....|.--.|-.+. .|+-.+ +..|..|++...      
T Consensus        71 AIMnP~~~iiALra------g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~------  135 (1630)
T 1xi4_A           71 AIMNPASKVIALKA------GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE------  135 (1630)
T ss_pred             hccCCCcceEEEec------CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCC------
Confidence            34567777776652      5789999999887777766 34567777776444 333333 467999999642      


Q ss_pred             eeeeEEeecc----CCceEEEEEccCCCEEEEee-------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          142 YQLIARQEAH----KRIIWSCSWNPFGHEFATGS-------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       142 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      ..+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|..+.....    .+.+|-.....+...... 
T Consensus       136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha~~F~~~~~~~~~-  210 (1630)
T 1xi4_A          136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNA-  210 (1630)
T ss_pred             CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhHhhhheeccCCCC-
Confidence            2223333323    45677777788888776544       2477888888765432    344554443333322111 


Q ss_pred             cCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          211 QKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       211 ~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                       ....++..+..   .+.++|.++.......    ++-+.+....+.+...-..-..+|..++..       ..+...+.
T Consensus       211 -~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~----~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-------g~iy~itk  278 (1630)
T 1xi4_A          211 -EESTLFCFAVRGQAGGKLHIIEVGTPPTGN----QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-------DVVFLITK  278 (1630)
T ss_pred             -CCceEEEEEEecCCCceEEEEecCCCccCC----CCCccccccccCCcccccCcceEEEecccc-------CEEEEEec
Confidence             11123333222   3688888885431100    000001111111111223334567777766       67777788


Q ss_pred             CCcEEEeEec
Q 037555          288 DNTVRVFQVN  297 (298)
Q Consensus       288 d~~i~iw~~~  297 (298)
                      -|.|.++|+.
T Consensus       279 ~G~~~~~d~~  288 (1630)
T 1xi4_A          279 YGYIHLYDLE  288 (1630)
T ss_pred             CceEEEEecc
Confidence            8899999874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.84  E-value=1.5  Score=32.57  Aligned_cols=103  Identities=12%  Similarity=0.018  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-------ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      .++.|.|+|.+.++.       ||.|+-++..+.....-+       +.-=..+..|.+.|+|.+.++.  |+.+.-.  
T Consensus        91 ~a~~fD~~G~LYav~-------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~--  159 (236)
T 1tl2_A           91 QFLFFDPNGYLYAVS-------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA--  159 (236)
T ss_dssp             SEEEECTTSCEEEEE-------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE--
T ss_pred             eEEEECCCCCEEEeC-------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec--
Confidence            788999999988884       788988876432111110       1112467999999999877777  7775432  


Q ss_pred             ccCCCCcccee-eeEEee-ccCCceEEEEEccCCCEEEEeeCCCe
Q 037555          133 QRTGTGEIDYQ-LIARQE-AHKRIIWSCSWNPFGHEFATGSRDKT  175 (298)
Q Consensus       133 ~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (298)
                      ..+........ ....+. ..-...+.+.|.+++.++++.  ++.
T Consensus       160 ~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          160 LPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             CCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            22211110010 011111 222234456688888777666  664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.72  E-value=2.6  Score=35.10  Aligned_cols=55  Identities=13%  Similarity=0.145  Sum_probs=35.4

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC------CCCceEEEEEeec
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP------FNSSVTALSWVGL  208 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~  208 (298)
                      ...+.|+|.|+++++++-...+.|++++..++.. ..+..+..      .......|+|+|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCC
Confidence            3457999999998776654445788887654432 22222221      2456779999995

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.64  E-value=2  Score=33.52  Aligned_cols=137  Identities=9%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             eEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeC----C-------CeEEEEEeccCCCCccceeeeEEeec
Q 037555           83 AEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSR----D-------RQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..+.+||..+.+-.. .+..............++.+++.|+.    +       ..+..||..+..     +..+..+..
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-----W~~~~~~p~   87 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-----WLGMPPLPS   87 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-----EEECCCBSS
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-----EEECCCCCc
Confidence            468899988766432 12111112222233347777777773    1       126677766532     222222111


Q ss_pred             cCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      .... .+++.. ++..++.|+.+        ..+.+||..+.+- ..+..++.... -.+++. ..+     .+++.|+.
T Consensus        88 ~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~-~~~~~~-~~~-----~iyv~GG~  157 (315)
T 4asc_A           88 PRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVY-GHTVLS-HMD-----LVYVIGGK  157 (315)
T ss_dssp             CEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEE-ETT-----EEEEECCB
T ss_pred             chhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCccc-ceeEEE-ECC-----EEEEEeCC
Confidence            1111 112222 56666666632        4588899887543 21212221111 122222 233     56666665


Q ss_pred             -C-----CcEEEEEeeec
Q 037555          223 -S-----GVIELWSISVN  234 (298)
Q Consensus       223 -d-----g~i~vwd~~~~  234 (298)
                       +     ..+.+||..+.
T Consensus       158 ~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             CTTSCBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCC
Confidence             2     46788887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.58  E-value=2.1  Score=33.49  Aligned_cols=154  Identities=10%  Similarity=0.091  Sum_probs=71.6

Q ss_pred             EcCCCCEEEeEeccCC------CCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC-------CeEE
Q 037555           64 CDHQGKLVASSCKAQS------TAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD-------RQFS  128 (298)
Q Consensus        64 ~s~~~~~l~~~~~~~~------~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~  128 (298)
                      ...++.+++.|+....      .....+.+||..+.+-..  .+.........+.+  ++.+++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            3456788888863100      011237788887654322  22211111122222  56677777654       2466


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      +||+.+..     +..+..+...... .+++. .++..++.|+.      -..+.+||+.+.+-.. +...+. ...-.+
T Consensus       131 ~yd~~~~~-----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~-~r~~~~  201 (318)
T 2woz_A          131 CYDPVAAK-----WSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD-LAPMKT-PRSMFG  201 (318)
T ss_dssp             EEETTTTE-----EEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE-ECCCSS-CCBSCE
T ss_pred             EEeCCCCC-----EeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE-CCCCCC-Ccccce
Confidence            77776532     3322221111111 11222 35666677653      2358899988754322 212221 111122


Q ss_pred             EEEeeccccCCccEEEEeecC-----CcEEEEEeeec
Q 037555          203 LSWVGLDRQKNHGFLAVGMES-----GVIELWSISVN  234 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~  234 (298)
                      ++.. ++     .+++.|+.+     ..+.+||+.+.
T Consensus       202 ~~~~-~~-----~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          202 VAIH-KG-----KIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEE-TT-----EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEE-CC-----EEEEEcCcCCCCccceEEEEECCCC
Confidence            3322 33     566666543     24667776554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.30  E-value=2.3  Score=33.20  Aligned_cols=146  Identities=11%  Similarity=0.008  Sum_probs=78.7

Q ss_pred             EEEEcCCCCEEEeEeccCC---------CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe--CCCeEEE
Q 037555           61 SLCCDHQGKLVASSCKAQS---------TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS--RDRQFSV  129 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~---------~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i  129 (298)
                      +--++++|..|+-+.....         .....|+..++...+... +...  .  ...|+++++.|+-..  .++.-.|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            3456788888887754210         014678888887664322 2211  1  225677888877665  4455555


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      |.+.....      ....+..+..    ..++++++.|+-.+. ...|.+.++....... +  +.   ... ...+.|.
T Consensus       132 y~~~~dGs------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l--~~---~~~-~~~~~P~  194 (302)
T 3s25_A          132 YRIRIDGE------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F--YD---CNC-YKPVVLD  194 (302)
T ss_dssp             EEEETTSC------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E--EC---SCE-EEEEEEE
T ss_pred             EEEECCCC------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E--eC---CCc-cceeeec
Confidence            55544321      1223333322    456778888876665 5678888876654322 1  22   122 2345687


Q ss_pred             cccCCccEEEEeecC--CcEEEEEeee
Q 037555          209 DRQKNHGFLAVGMES--GVIELWSISV  233 (298)
Q Consensus       209 ~~~~~~~~l~~g~~d--g~i~vwd~~~  233 (298)
                      +     .+|+-...+  ..|..-++..
T Consensus       195 g-----~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          195 D-----TNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             T-----TEEEEEEGGGTTEEEEECSSS
T ss_pred             C-----CEEEEEEcCCCcEEEEEECCC
Confidence            7     566554433  3455555544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.28  E-value=3  Score=34.48  Aligned_cols=158  Identities=13%  Similarity=0.151  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc----cccEEEEEEcCCCCEEEEEeC-------C
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSR-------D  124 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d  124 (298)
                      ..|.=-.|-.+. .|+...      +..|+-|+++. ..+++.|..|    ...|..-..+++.++++..+-       .
T Consensus       106 e~VvfWkWis~~-~l~lVT------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~  178 (494)
T 1bpo_A          106 DDVTFWKWISLN-TVALVT------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (494)
T ss_dssp             SCCCEEEEEETT-EEEEEC------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred             CCceEEEecCCC-eEEEEc------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence            445555664433 344432      57899999964 3455555544    356888888999998765442       4


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeC---CCeEEEEEccCC---ccee---eee-
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSR---DKTVKIWAVENK---SSVK---QIL-  191 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~~wd~~~~---~~~~---~~~-  191 (298)
                      |.+.+|..+.        ...+.+.+|-.....+...-+   ...|+.+..   .+++++-++...   ....   ... 
T Consensus       179 G~mQLYS~er--------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv  250 (494)
T 1bpo_A          179 GAMQLYSVDR--------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (494)
T ss_dssp             EEEEEEESTT--------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred             ceEEEeeccc--------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee
Confidence            7788998875        335556666554443333211   134444443   378999988543   1111   000 


Q ss_pred             ecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          192 ALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       192 ~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .++  ...+-..++..++..     .++..-+.-|.|++||+.++
T Consensus       251 ~fppe~~~DFPvamqvs~ky-----gviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          251 FFPPEAQNDFPVAMQISEKH-----DVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             CCCTTSTTCCEEEEEEETTT-----TEEEEEETTSEEEEEETTTC
T ss_pred             eCCcccccCceeEEEecccC-----CEEEEEecCceEEEEecccc
Confidence            111  123445678888876     68888889999999999988

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.28  E-value=0.9  Score=38.70  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCC-----C-ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEE
Q 037555          105 TVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGT-----G-EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVK  177 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (298)
                      ....+.++|||++++.++. +.++.++|++.-..     . ........... ..-.....+|.++|+-..+..-|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            3457889999998877665 88999999984211     0 00011122222 233457789999997667777899999


Q ss_pred             EEEccC
Q 037555          178 IWAVEN  183 (298)
Q Consensus       178 ~wd~~~  183 (298)
                      .|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999975

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.98  E-value=6.9  Score=37.74  Aligned_cols=160  Identities=11%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc----cccEEEEEEcCCCCEEEEEe-------CC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH----SLTVTQIRFSHDDNLLLSVS-------RD  124 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d  124 (298)
                      .+|.=-.|-....+-.++       +..|+-|++.. ..+++.|..|    ...|..-..+++.++++..|       -.
T Consensus       106 e~VvfWkWis~~~l~lVT-------~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~  178 (1630)
T 1xi4_A          106 DDVTFWKWISLNTVALVT-------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (1630)
T ss_pred             CCceEEEecCCCeeEEEc-------CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence            456666665444443444       57899999963 3455556555    45677778888888776544       35


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc--c-CCCEEEEeeC---CCeEEEEEccCC---cceeeee----
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN--P-FGHEFATGSR---DKTVKIWAVENK---SSVKQIL----  191 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---dg~i~~wd~~~~---~~~~~~~----  191 (298)
                      |.+.+|..+..        ..+.+.+|-.....+...  + ....|+.+..   .+++++-++...   .......    
T Consensus       179 G~mQLyS~er~--------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~  250 (1630)
T 1xi4_A          179 GAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (1630)
T ss_pred             ceeeeeecccc--------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence            78889988753        233444554433322221  1 1123332222   368888888543   1111000    


Q ss_pred             ecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555          192 ALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT  236 (298)
Q Consensus       192 ~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  236 (298)
                      .++  ....-..++..++..     .++..-+.-|.|++||+.++..
T Consensus       251 ~~~~~~~~Dfpv~~~vs~k~-----g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          251 FFPPEAQNDFPVAMQISEKH-----DVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             cCCcccccCcceEEEecccc-----CEEEEEecCceEEEEecccchh
Confidence            011  112334567777665     6788888899999999998843

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.90  E-value=2.7  Score=32.84  Aligned_cols=137  Identities=10%  Similarity=0.101  Sum_probs=70.1

Q ss_pred             CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC--------------CeEEEEE
Q 037555           66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD--------------RQFSVFA  131 (298)
Q Consensus        66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd  131 (298)
                      .++..+.....   ..++.|...+.+... ...+...  .  +--+++++.+|+-+...              ..|+..+
T Consensus        23 ~~g~~iy~~n~---~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           23 ESDGEVFFSNT---NDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EETTEEEEEEG---GGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EeCCEEEEEeC---CCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            45666666643   235677777765333 3334322  2  23457788877766543              3455555


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--C--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--R--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      +....        ...+..  ..  ...|++++++|+-..  .  ...|...++..... ..   +..+..    .++++
T Consensus        95 ~dg~~--------~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~---lt~~~~----~~~~~  154 (302)
T 3s25_A           95 RNGHG--------STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KK---IKNHYL----FTCNT  154 (302)
T ss_dssp             TTSCC--------CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EE---EESSCC----CCSEE
T ss_pred             CCCCc--------ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EE---EeCCCc----eEeeE
Confidence            55321        111221  11  236778888888776  3  34455556654332 21   211221    45677


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeec
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+.    .+..+......|.+.++...
T Consensus       155 ~g~----~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          155 SDR----YFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             ETT----EEEEECTTTCCEEEEETTTT
T ss_pred             ECC----EEEEEeCCCceEEEEECCCC
Confidence            763    34444433567777776543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.43  E-value=1.6  Score=37.26  Aligned_cols=110  Identities=13%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-------------eeccccccccEEEEEEcCCCCEEEEEeC
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-------------MGRLQSHSLTVTQIRFSHDDNLLLSVSR  123 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  123 (298)
                      .....+..+|||++++++++    .+.++.|+++.+...             ..... -.......+|.++|+...+..-
T Consensus       323 ksPHGv~vsPDGkyi~v~GK----LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfi  397 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGK----LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFI  397 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECT----TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETT
T ss_pred             CCCcceeeCCCCCEEEEcCC----CCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeee
Confidence            44567889999999999985    578999999875321             11222 2334577899999976677778


Q ss_pred             CCeEEEEEeccCC---CCccceeeeEEeeccCCceEEEE-----EccCCCEEEEee
Q 037555          124 DRQFSVFAIQRTG---TGEIDYQLIARQEAHKRIIWSCS-----WNPFGHEFATGS  171 (298)
Q Consensus       124 dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~  171 (298)
                      |..|..|++...-   .+......+..+.-|-.+-...+     -.|+|++|++..
T Consensus       398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            9999999997631   00111234555554443322211     135677777664

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.14  E-value=3.2  Score=31.97  Aligned_cols=129  Identities=11%  Similarity=0.048  Sum_probs=69.0

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      |+.|+.|-....-.+..-..-...|..++...+  ..+.-. +|.|..|-........       ........|..++..
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-------~~~~~~~~i~~i~~G  149 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-------VPAEAQSGVTALDGG  149 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-------CCGGGGSSEEEEEEC
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-------CCccCCCCeEEEEcc
Confidence            677888875432211111111346777766543  344445 9999999865432211       011123456667665


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ....  +.-. ||.|..|-......+.   ........|..++.....      .++.  .||.|+.|-....
T Consensus       150 ~~~~--~~l~-~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h------s~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          150 VYTA--LAVK-NGGVIAWGDNYFGQTT---VPAEAQSGVDDVAGGIFH------SLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             SSEE--EEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSE------EEEE--ETTEEEEEECCTT
T ss_pred             cCEE--EEEE-CCEEEEecCCCCCCCC---CceecCCCeEEEEecCCE------EEEE--ECCeEEEEECCCC
Confidence            3332  2234 7999999765433322   111123457777765543      3444  5999999976543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.00  E-value=4.8  Score=33.63  Aligned_cols=110  Identities=9%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             CceEEEEEcCCCC--EEEeEeccCCCCceEEEEEEcCCce---eeec----cc-----cccccEEEEEEcCC----CCEE
Q 037555           57 NELFSLCCDHQGK--LVASSCKAQSTAAAEIWLWEVGSWK---AMGR----LQ-----SHSLTVTQIRFSHD----DNLL  118 (298)
Q Consensus        57 ~~v~~~~~s~~~~--~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~----~~-----~~~~~v~~~~~~~~----~~~l  118 (298)
                      .....|+|.|+|.  +|++-      ..|.|++++.....   .+..    +.     ........|+|+|+    +.+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~e------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILE------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEE------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred             CCceEEEECCCCCeEEEEEe------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence            4567999999996  55554      37899999754221   1111    11     11456889999996    4444


Q ss_pred             EEEeCC------------CeEEEEEeccCCCC---ccceeeeEEee--ccCCceEEEEEccCCCEEEEeeC
Q 037555          119 LSVSRD------------RQFSVFAIQRTGTG---EIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSR  172 (298)
Q Consensus       119 ~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  172 (298)
                      ++-+.+            ..|.-|.+......   ....+.+..+.  .....-..|+|.||+.++++.+.
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            443321            13444555432111   00122222222  11234678999999987776554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.44  E-value=3.9  Score=31.50  Aligned_cols=128  Identities=15%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN  161 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (298)
                      |+.|+.|-....-.+..-......|..++...+- .++. . ||.|..|-.........   +    ......|..++..
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~---P----~~~~~~v~~ia~G  110 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV---P----AEARSGVDAIAAG  110 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC---C----GGGSSSEEEEEEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC---C----cccCCCeEEEECc
Confidence            5667777654322111111123356666665432 2333 4 89999998654322110   0    1113467777766


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ..  ..+.-. ||.|..|-......+.   ........|..++.....      .++. . ||.|+.|-...
T Consensus       111 ~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~~~~~i~~i~~G~~~------~~~l-~-~G~v~~wG~n~  168 (282)
T 3qhy_B          111 AW--ASYALK-DGKVIAWGDDSDGQTT---VPAEAQSGVTALDGGVYT------ALAV-K-NGGVIAWGDNY  168 (282)
T ss_dssp             TT--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSE------EEEE-E-TTEEEEEECCT
T ss_pred             CC--EEEEEe-CCeEEEecCCCCCcCC---CCccCCCCeEEEEcccCE------EEEE-E-CCEEEEecCCC
Confidence            43  333344 8999999765433322   111123457677665433      2332 3 79999997654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.79  E-value=5.3  Score=31.89  Aligned_cols=76  Identities=7%  Similarity=0.088  Sum_probs=41.2

Q ss_pred             ceEEEEEeecccc--CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555          199 SVTALSWVGLDRQ--KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN  276 (298)
Q Consensus       199 ~v~~~~~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  276 (298)
                      .+..++|.....-  -.+.++++....+.|...++..+..           .....+  +......+..|++.|++    
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-----------~~~~~~--~~~~~~rp~~v~~~pdG----  334 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-----------TEDGRI--LTDRGQRIRDVRTGPDG----  334 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----------EEEEEE--SGGGCCCEEEEEECTTS----
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-----------eeeEEc--ccCCCCceeEEEECCCC----
Confidence            4566777642210  1225666666677788777764310           001111  22234578999999999    


Q ss_pred             CcceEEEee-eCCCcEEEeEe
Q 037555          277 SRTMQLASC-GADNTVRVFQV  296 (298)
Q Consensus       277 ~~~~~l~s~-~~d~~i~iw~~  296 (298)
                         .++++. ..+|  +||.+
T Consensus       335 ---~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          335 ---YLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             ---CEEEEECSTTE--EEEEE
T ss_pred             ---cEEEEEeCCCC--EEEEE
Confidence               555543 3445  45544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.66  E-value=5.5  Score=31.80  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEEEeec
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALSWVGL  208 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~  208 (298)
                      -...+.|+|.|++.++++-...|.|++++...++. ..+..+    .........|+++|+
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccc
Confidence            34568999999998776665589999998655443 222122    123456789999995

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.58  E-value=6.5  Score=32.56  Aligned_cols=219  Identities=7%  Similarity=0.044  Sum_probs=123.9

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCcccccccC---CC------CceEEeccCC----CceEEEEEcCCCCEEE
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT---LW------PESHKLYGHG----NELFSLCCDHQGKLVA   72 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~------~~~~~~~~h~----~~v~~~~~s~~~~~l~   72 (298)
                      ++.|+.++...+....-..+.|.--..+ +..--+++.+   -|      .+++.+.-|.    ..|..-..+++.+.++
T Consensus        88 lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~  166 (494)
T 1bpo_A           88 LQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL  166 (494)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred             EEEEchHHhhhhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEE
Confidence            4455555555555554444444333333 2222222221   22      2445554443    3577777788888877


Q ss_pred             eEecc--CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEEEEEeC---CCeEEEEEeccCC--CCccce
Q 037555           73 SSCKA--QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLLLSVSR---DRQFSVFAIQRTG--TGEIDY  142 (298)
Q Consensus        73 ~~~~~--~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~~--~~~~~~  142 (298)
                      ..+-.  .+.-.|.+.+|..+. +.-+.+.+|......+.+..+.   +++.-+..   .+.+++.++....  ......
T Consensus       167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k  245 (494)
T 1bpo_A          167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK  245 (494)
T ss_dssp             EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred             EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence            65441  112357899999874 3445678887766555553221   23444443   2789999997541  111111


Q ss_pred             eeeEEeec---cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555          143 QLIARQEA---HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV  219 (298)
Q Consensus       143 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  219 (298)
                      +.+....+   ..+--.++..++....++..+.-|.|++||+.++.++..-+ +  ....|..-+.....     .=++.
T Consensus       246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-I--s~~~iF~t~~~~~~-----~Gi~~  317 (494)
T 1bpo_A          246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-I--SGETIFVTAPHEAT-----AGIIG  317 (494)
T ss_dssp             EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CSSCEEEEEEETTT-----TEEEE
T ss_pred             eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-c--cCCceEEecccCCC-----CcEEE
Confidence            11211111   23445678888888899999999999999999999887432 2  34555544444333     23444


Q ss_pred             eecCCcEEEEEeeec
Q 037555          220 GMESGVIELWSISVN  234 (298)
Q Consensus       220 g~~dg~i~vwd~~~~  234 (298)
                      -...|.|.-..+...
T Consensus       318 Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          318 VNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EETTCEEEEEEECTT
T ss_pred             EccCceEEEEEEccc
Confidence            457787776666543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.34  E-value=7.1  Score=32.60  Aligned_cols=55  Identities=13%  Similarity=0.013  Sum_probs=34.7

Q ss_pred             ceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecC---------CCCCceEEEEEeec
Q 037555          154 IIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALP---------PFNSSVTALSWVGL  208 (298)
Q Consensus       154 ~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~  208 (298)
                      .-+.|+|.|++. .|+++...|.|++++.........+..+.         ........|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            457899999986 56666788999999754321111111111         11456788999996

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.81  E-value=13  Score=34.33  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555          154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      .+.+++..++..++++.+.|+++|+|++.+++++...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4667777778889999999999999999998877643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.35  E-value=18  Score=32.30  Aligned_cols=148  Identities=13%  Similarity=0.095  Sum_probs=82.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-ccc----ccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQS----HSLTVTQIRFSHDDNLLLSVSRDRQFSVFA  131 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (298)
                      ..|.++....+|.+.+..       .+-|..++..+++.... ...    ....|.++...+++..|..++. +-+..++
T Consensus       146 ~~i~~i~~d~~g~lWigt-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~  217 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVGT-------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF  217 (758)
T ss_dssp             SCEEEEEECTTCCEEEEE-------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEe-------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence            457888888778766644       23477788766543221 111    1234888888777665555554 3567777


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-----CCCCceEEEEEe
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-----PFNSSVTALSWV  206 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~~~~~  206 (298)
                      .....     ......+  ....|.++....++.+.+ |+.+ -+.+++..+..... +....     -....|.++...
T Consensus       218 ~~~~~-----~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D  287 (758)
T 3ott_A          218 PSTGQ-----IKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFAD  287 (758)
T ss_dssp             TTTTE-----EEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEEC
T ss_pred             CCCCe-----EEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEc
Confidence            65421     1111111  234578888777776555 4444 47888876644321 11110     122457888776


Q ss_pred             eccccCCccEEEEeecCCcEEEE
Q 037555          207 GLDRQKNHGFLAVGMESGVIELW  229 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~dg~i~vw  229 (298)
                      ..+      .|-.|+..| +.++
T Consensus       288 ~~g------~lWiGT~~G-l~~~  303 (758)
T 3ott_A          288 QEH------NIWLGTDYG-ISLS  303 (758)
T ss_dssp             TTC------CEEEEESSS-EEEE
T ss_pred             CCC------CEEEEeCCc-cccc
Confidence            665      455666666 5443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.67  E-value=2.5  Score=33.65  Aligned_cols=109  Identities=7%  Similarity=-0.008  Sum_probs=61.5

Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEE--cC-CCCEEEEE-eCCCeEEEEEeccCCCCccceee
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRF--SH-DDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQL  144 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  144 (298)
                      +++.+     +.||.|.-.|..+|+.+-++... ..++....-  .+ ++..++.. +.||.|..++...+       ..
T Consensus        12 ~V~v~-----t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-------~~   79 (339)
T 2be1_A           12 ILIAA-----DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-------LQ   79 (339)
T ss_dssp             EEEEE-----ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-------EE
T ss_pred             EEEEE-----eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-------cE
Confidence            45556     34899999999999887766543 122222110  01 22333333 57999988887652       11


Q ss_pred             eEEeec----cCCceEE---EEE-c----cCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555          145 IARQEA----HKRIIWS---CSW-N----PFGHEFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       145 ~~~~~~----~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      ...+..    ...++..   ... .    ..+..+++|+.+|++...|+++++.+..+
T Consensus        80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            111111    1112221   000 0    14568899999999999999998877643

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=82.43  E-value=15  Score=28.21  Aligned_cols=124  Identities=12%  Similarity=0.004  Sum_probs=74.2

Q ss_pred             cccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555          103 SLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV  181 (298)
Q Consensus       103 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  181 (298)
                      ...|..+.... +...++..+.+|.++-..+..-. ..........++. .+.+..+........++..+..|.+..+..
T Consensus        67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~  144 (276)
T 3no0_A           67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV  144 (276)
T ss_dssp             TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred             CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence            45566654421 46789999999999999876532 1111122222333 345555555555667888899999888876


Q ss_pred             cCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          182 ENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       182 ~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ..-....      ....+. ....|..+...+.+     ..++..+..|.++...+..-
T Consensus       145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~-----~~ll~~T~~G~~kr~~~~e~  197 (276)
T 3no0_A          145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGE-----PYLLVITAKGRVKKISHEEI  197 (276)
T ss_dssp             GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSC-----SEEEEEETTSCEEEEEGGGS
T ss_pred             hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCC-----CEEEEEeCCCcEEEeEHHHc
Confidence            4322110      011233 23456665554444     57888889999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 2e-14
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 50  HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
               GH +++ ++C    G   A+     +     ++              +    +T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDAT---CRLFDLRADQELMTYSHDNIICGITSV 276

Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169
            FS    LLL+   D   +V+                    H   +        G   AT
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDAL-------KADRAGVLAGHDNRVSCLGVTDDGMAVAT 329

Query: 170 GSRDKTVKIW 179
           GS D  +KIW
Sbjct: 330 GSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 2e-13
 Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 18/189 (9%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
                 ++    GH  ++ SL      +L  S     S       LW+V           
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-----AKLWDVREGMCRQTFTG 224

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161
           H   +  I F  + N   + S D    +F ++          +    +     I S S++
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFS 279

Query: 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221
             G     G  D    +W             L   ++ V+ L         +   +A G 
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGV---LAGHDNRVSCLGV-----TDDGMAVATGS 331

Query: 222 ESGVIELWS 230
               +++W+
Sbjct: 332 WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 36/209 (17%)

Query: 86  WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI 145
            LW++ + +       H+  V  +  + D  L +S + D    ++ ++       +    
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-------EGMCR 219

Query: 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205
                H+  I +  + P G+ FATGS D T +++ +     +    +       +T++S+
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSF 278

Query: 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR 265
                 K+   L  G +     +W        D      +           A H   V+ 
Sbjct: 279 -----SKSGRLLLAGYDDFNCNVW--------DALKADRAGV--------LAGHDNRVSC 317

Query: 266 MAWKTHEKPKNSRTMQLASCGADNTVRVF 294
           +             M +A+   D+ ++++
Sbjct: 318 LGV-------TDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 149 EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205
             H   I++  W        + S+D  + IW         ++ A+P  +S V   ++
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAY 105

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (157), Expect = 1e-12
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 20/154 (12%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS-------TAAAEIWLWEVGSWK 94
              L  E+    GH + ++S+     G+ V S    +S        A  +       S  
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 95  AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI 154
                  H   V  +  + +D  +LS S+DR    +  +           +   + H+  
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-------SGNPLLMLQGHRNS 352

Query: 155 IWSC------SWNPFGHEFATGSRDKTVKIWAVE 182
           + S       S  P  + FATGS D   +IW  +
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 21/259 (8%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
              +W   ++      +             +       +    + +W++ + +    L  
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161
                T      D   + + S DR   V+  +     E           HK  ++S  + 
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG----LDRQKNHGFL 217
             G    +GS D++VK+W ++N ++             VT +        +   +N  ++
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNS 277
             G +   +  W                + N ++       H  +V  +A          
Sbjct: 324 LSGSKDRGVLFWDK-------------KSGNPLLMLQ---GHRNSVISVAVANGSSLGPE 367

Query: 278 RTMQLASCGADNTVRVFQV 296
             +  A+   D   R+++ 
Sbjct: 368 YNV-FATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 41/330 (12%), Positives = 90/330 (27%), Gaps = 72/330 (21%)

Query: 24  PDAVPAVFTEPPIEDQLAW-----HTLWPESHKLYGHGNELFSLCCDHQGKLVASSC--- 75
             +VP    +   +  + +       +  E HK   H + +  +   + G+ +A+ C   
Sbjct: 25  SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84

Query: 76  ---------KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126
                       +  + +    +           S  L +  + FS D   L + + DR 
Sbjct: 85  TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144

Query: 127 FSVFAIQRTGTGEIDYQLIARQEAHKRII------------------------------- 155
             ++ I+      I         +                                    
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204

Query: 156 ----WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI----LALPPFNSSVTALSWVG 207
                       G   A GS D+ V++W  E    V+++     +      SV ++ +  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-- 262

Query: 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267
               ++   +  G     ++LW++        S    S    +        H   V  +A
Sbjct: 263 ---TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI----GHKDFVLSVA 315

Query: 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297
              +++        + S   D  V  +   
Sbjct: 316 TTQNDE-------YILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 51  KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKAMGRLQSHSLTVTQ 108
           +   H   +     D   + V  + K Q+     ++   +       + +   H+  V  
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 109 IRFSHDDNLLLS----------VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
           ++FS+D   L +          VS     +  +       + +    +   +    I S 
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 159 SWNPFGHEFATGSRDKTVKIW 179
            ++P G   ATG+ D+ ++IW
Sbjct: 128 CFSPDGKFLATGAEDRLIRIW 148

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 39  QLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE---IWLWEVGSWKA 95
           +L  H    E        +              +        + +    I +W+V +   
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 96  MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155
           +  L  H   V  + F      +LS + D+   V+  +       + + +    AH+  +
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK-------NKRCMKTLNAHEHFV 292

Query: 156 WSCSWNPFGHEFATGSRDKTVKIW 179
            S  ++       TGS D+TVK+W
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 8e-11
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 26/204 (12%)

Query: 39  QLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR 98
           ++             GH   +  +  +  G L+AS    Q+     + +W V + +    
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-----VRVWVVATKECKAE 180

Query: 99  LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI---QRTGTGEIDY----------QLI 145
           L+ H   V  I ++ + +           +  +        +G  D             +
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205
                H   +    ++  G    + + DKT+++W  +NK  +K    L      VT+L +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT---LNAHEHFVTSLDF 297

Query: 206 VGLDRQKNHGFLAVGMESGVIELW 229
                 K   ++  G     +++W
Sbjct: 298 -----HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 44/298 (14%), Positives = 94/298 (31%), Gaps = 65/298 (21%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
           W    PE + L GH + +  +       ++ S+ +  +     I +W+  +      L+ 
Sbjct: 3   WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDAT-----IKVWDYETGDFERTLKG 57

Query: 102 HSLTVTQI------------------------------------------RFSHDDNLLL 119
           H+ +V  I                                              + + ++
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117

Query: 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
           S SRD+   ++ +Q           +     H+  +     N  G   A+ S D+TV++W
Sbjct: 118 SASRDKTIKMWEVQ-------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 180 AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV 239
            V  K    ++         + + +        +    +   +SG    + +S +R   +
Sbjct: 171 VVATKECKAELREHRHVVECI-SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 240 STPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297
                ST   ++       H   V  + + +  K        + SC  D T+RV+   
Sbjct: 230 KMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGK-------FILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 45/305 (14%), Positives = 96/305 (31%), Gaps = 63/305 (20%)

Query: 11  RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKL 70
           +   D +  +               +  +L     +     ++GH + + S+     G  
Sbjct: 56  KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115

Query: 71  VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130
           + S+ + ++     I +WEV +   +     H   V  +R + D  L+ S S D+   V+
Sbjct: 116 IVSASRDKT-----IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWN--------------------PFGHEFATG 170
            +          +  A    H+ ++   SW                       G    +G
Sbjct: 171 VVA-------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223

Query: 171 SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230
           SRDKT+K+W   + S+   ++ L   ++ V  + +          F+    +   + +W 
Sbjct: 224 SRDKTIKMW---DVSTGMCLMTLVGHDNWVRGVLF-----HSGGKFILSCADDKTLRVWD 275

Query: 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290
               R                       H   V  + +             + +   D T
Sbjct: 276 YKNKR----------------CMKTLNAHEHFVTSLDFHKTAP-------YVVTGSVDQT 312

Query: 291 VRVFQ 295
           V+V++
Sbjct: 313 VKVWE 317

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 8/63 (12%), Positives = 24/63 (38%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202
           Q++  ++A K  I      P        S D ++ ++  + ++    +L    +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 203 LSW 205
            ++
Sbjct: 62  CNF 64

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 99  LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
            Q+    ++ I+     +LLL  S D   +V+          +  L+     +K  +  C
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLR-YKHPLLCC 62

Query: 159 SWNPF-GHEFATGSRDKTVKIW 179
           ++      +   G+    +   
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201
           ++L  +       + S  ++P      T   D  +  W ++ +  +K          SV 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVV 298

Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSI 231
            ++        +   L +       +  + 
Sbjct: 299 KIAC-------SDNILCLATSDDTFKTNAA 321

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 1e-08
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 12/144 (8%)

Query: 47  PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV 106
           P+   L GH   + + C   +   V +    +      I +++  + K + +L  H   V
Sbjct: 3   PQRTTLRGHMTSVIT-CLQFEDNYVITGADDKM-----IRVYDSINKKFLLQLSGHDGGV 56

Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166
             ++++H   +L+S S DR   V+ I++          +                     
Sbjct: 57  WALKYAH-GGILVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVRCLDIVEYKNIKY 110

Query: 167 FATGSRDKTVKIWAVENKSSVKQI 190
             TGSRD T+ +W +  +SSV   
Sbjct: 111 IVTGSRDNTLHVWKLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 63  CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122
                  L+  S K   +AAA+  +    +     +   H   ++ I   +  + +L   
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG 300

Query: 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
            + QF+++ ++   +G+    + A        IWS ++       A   +D    + 
Sbjct: 301 SENQFNIYNLR---SGK---LVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH 165
           ++   ++ D   +     + +  ++           +  +   + H   +    W P  +
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 166 EFATGSRDKTVKIW 179
              T   D+   +W
Sbjct: 65  RIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 14/215 (6%)

Query: 61  SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS 120
               +     +A            I+      W  +  L+ H+  VT + ++ D N +++
Sbjct: 12  CHAWNKDRTQIAICPNNHE---VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180
              DR   V+ ++        ++         R      W P   +FA GS  + + I  
Sbjct: 69  CGTDRNAYVWTLKG-----RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 181 VENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240
            E ++                  + + LD   N   LA G       ++S  +    +  
Sbjct: 124 FEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 241 TPAPSTANIIIRFDP--FACHVAAVNRMAWKTHEK 273
            P P  + +         +     V+ + +  +  
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 18/152 (11%)

Query: 46  WPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT 105
                 L      L ++    +  LVA+           ++ ++  + K           
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAG----HDCFPVLFTYDSAAGKL--SFGGRLDV 286

Query: 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG- 164
             Q             + D++ S       G G            HK  +   S    G 
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAG--------LDSLHKNSVSQISVLSGGK 338

Query: 165 ---HEFATGSRDKTVKIWAVENKSSVKQILAL 193
               +F T   D  + IW V +  S  + L +
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSLESALKDLKI 370

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 8/151 (5%), Positives = 30/151 (19%), Gaps = 13/151 (8%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV--GSWKAMGRL 99
              +  +   +              +     +     +          V  G ++ +  L
Sbjct: 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 272

Query: 100 QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
           +S  L  +                      + ++             +    K  +    
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-----------RKVTEVKNNLTDLR 321

Query: 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
            +           D  +  + +E     + +
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 25/213 (11%), Positives = 55/213 (25%), Gaps = 27/213 (12%)

Query: 99  LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
            ++H   +  +     ++  +S S D    V+  +     E           HK  +   
Sbjct: 10  GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHV 66

Query: 159 SW-------NPFGHEFATGSRDKTVKIWAVENKSSVK-------QILALPPFNSSVTALS 204
                           AT S    +  + +  +   K        +L       S  AL 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC--HVAA 262
           W   + +     L      G   +W          S     +  + ++    +       
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295
              +          S    +A+   + TV++ +
Sbjct: 187 ATSVDI--------SERGLIATGFNNGTVQISE 211

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 9/158 (5%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
              L               S+    +G +           +    L  + ++++   + +
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFA---------IQRTGTGEIDYQLIARQEAHK 152
           +S ++  ++FS   +LL        F             I          Q    + AH 
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289

Query: 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
             + S S+N  G    +   D  ++ W V+ K  +  +
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 22/190 (11%), Positives = 52/190 (27%), Gaps = 9/190 (4%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
                     +        +L    QG    +SC   S    ++W   + +      L+ 
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161
                     S   +L    + +               ++     +   H+  + S  + 
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274

Query: 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221
             G  F +  +D  +  W     +S+ Q       +SSV +          +  ++  G 
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDI-----SVDDKYIVTGS 325

Query: 222 ESGVIELWSI 231
                 ++ +
Sbjct: 326 GDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 28/284 (9%), Positives = 63/284 (22%), Gaps = 17/284 (5%)

Query: 24  PDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83
            D        PP                   HG  + ++   +  + V +  K       
Sbjct: 19  ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC----- 73

Query: 84  EIWLWEVGSWK-----AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138
            + +W++         +     +    +   +   D   L+        S++ +      
Sbjct: 74  -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132

Query: 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS 198
                  +    +   I   S   F            +    +  +       A     S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192

Query: 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC 258
           +     W G        +            ++  +             A  +   +    
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL-GYCPTGEWLAVGMESSNVEVL 251

Query: 259 HVAAVNRMAWKTHEKPKNSRTM-----QLASCGADNTVRVFQVN 297
           HV   ++     HE    S           S G DN +  ++  
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210
           H   ++  +W+P G + A+ S DKT+KIW V      K I            + W     
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW----- 291

Query: 211 QKNHGFLAVGMESGVIELW 229
                 L     +G I   
Sbjct: 292 --TKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 12/141 (8%), Positives = 33/141 (23%), Gaps = 6/141 (4%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
               +  +   +           D                                +  +
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 236

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161
           HS +V  + +S D   + S S D+   ++ +    T +++  +       +         
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVA---TLKVEKTI---PVGTRIEDQQLGII 290

Query: 162 PFGHEFATGSRDKTVKIWAVE 182
                  + S +  +     E
Sbjct: 291 WTKQALVSISANGFINFVNPE 311

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 25/204 (12%), Positives = 46/204 (22%), Gaps = 8/204 (3%)

Query: 82  AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID 141
           A +I L +  +++    L +    V   R S     L  + RD + ++  +         
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDL-WMKEPTTV 98

Query: 142 YQLIARQEAHKRIIWSCSWNPFGHE-FATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200
            ++    E  + I  S           A         I   E     K            
Sbjct: 99  AEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157

Query: 201 TALS----WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPF 256
                      L       F+    E+G I L   +       +  +          D  
Sbjct: 158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS 217

Query: 257 ACHVAAVNRMAWKTHEKPKNSRTM 280
             +         K          +
Sbjct: 218 HRYFITAANARNKLVVIDTKEGKL 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 26/201 (12%)

Query: 40  LAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL 99
           +         H L GH N ++       G  V S     S     I +W+V +   +  L
Sbjct: 161 VWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTS-----IRVWDVETGNCIHTL 213

Query: 100 QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
             H    + +     DN+L+S + D    ++ I+          L   Q  +K       
Sbjct: 214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTC 265

Query: 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL--PPFNSSVTALSWVGLDRQKNHGFL 217
                +   T S D TVK+W ++    ++ ++ L        V  +              
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-----SNTKLVC 320

Query: 218 AVGMESG----VIELWSISVN 234
           AVG  +G     + +    V+
Sbjct: 321 AVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 25/213 (11%), Positives = 49/213 (23%), Gaps = 11/213 (5%)

Query: 88  WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
           W  G  K+   L+ H   V         N ++S S D    V++           + +  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV-------TGKCLRT 52

Query: 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP--PFNSSVTALSW 205
              H   +WS           +  R   V                      +     +  
Sbjct: 53  LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-APSTANIIIRFDPFACHVAAVN 264
              D       +  G    V+     +V               + +++            
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297
                          + + S   D ++RV+ V 
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210
           H + I + S +  G    +   +  +  W +    S +    +    + +T +       
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH--ATMITGIKTTSKGD 68

Query: 211 QKNHGF 216
                +
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210
           H   +   SW+P     ATGS D +V +W +   S    I+      SSV ++ W+    
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL---- 278

Query: 211 QKNHGFLAVGMESGVIELWSIS 232
             N   +    +   I+ W++ 
Sbjct: 279 --NETTIVSAGQDSNIKFWNVP 298

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 28/151 (18%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202
           + +     HKR I    +        +GS D T+++W +E  + ++ +            
Sbjct: 169 EFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVL----------EG 216

Query: 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
              +    + ++  +  G   G I++W +        +   P      +       H   
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLV-------AALDPRAPAGTLCLRTLVEHSGR 269

Query: 263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293
           V R+ +            Q+ S   D+T+ +
Sbjct: 270 VFRLQFDEF---------QIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 55  HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD 114
           +G++    C  ++ +LV S     +     I LW++     +  L+ H           D
Sbjct: 175 NGHKRGIACLQYRDRLVVSGSSDNT-----IRLWDIECGACLRVLEGH--EELVRCIRFD 227

Query: 115 DNLLLSVSRDRQFSVFAIQRTGTGEI--DYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
           +  ++S + D +  V+ +              +     H   ++   ++    +  + S 
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH 285

Query: 173 DKTVKIW 179
           D T+ IW
Sbjct: 286 DDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
           Q I  +    + ++   ++    +  +G RD T+KIW        + +
Sbjct: 6   QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL 51

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 23/190 (12%), Positives = 44/190 (23%), Gaps = 8/190 (4%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
                  S       ++  + C   Q + + S       +             +      
Sbjct: 144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK 203

Query: 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161
               V  + FS D                     G      + I   +   +        
Sbjct: 204 QGSFVRDVEFSPDSG---EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221
               +FAT   D T+++W V     V Q   L         +  V       +G +    
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCV-QKWTLDKQQLGNQQVGVVATG----NGRIISLS 315

Query: 222 ESGVIELWSI 231
             G +  + +
Sbjct: 316 LDGTLNFYEL 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 13/171 (7%), Positives = 29/171 (16%), Gaps = 10/171 (5%)

Query: 42  WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
                    K             D                       ++           
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 102 HSL------TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID---YQLIARQEAHK 152
                     +        D    S + +   +            D      I R     
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH 280

Query: 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
              +S + +  G     G     +  +  E      Q+      + S+ ++
Sbjct: 281 SY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
           +++     H + I + + NP      +GS D  +  W+  +
Sbjct: 4   EVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSS 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.39
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.24
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.99
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.98
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.97
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.4
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.8
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.46
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.13
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.1
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.03
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.89
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.77
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.7
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.01
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.95
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.55
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.75
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.75
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.12
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.82
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.75
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	85.39
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.61

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-38  Score=251.06  Aligned_cols=254  Identities=14%  Similarity=0.181  Sum_probs=211.0

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEE
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~   72 (298)
                      +..++..+++....+.+|.+.|.++.|. |.+..++++      .+|+       ....+.+|..+|.+++|+|++++|+
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~s-p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~  118 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA  118 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEe-CCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccc
Confidence            4456677888888999999999999998 567777765      4563       2356788999999999999999999


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCE-EEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNL-LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH  151 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  151 (298)
                      +++.   +.+..++||++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||++.       .........|
T Consensus       119 ~~~~---~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-------~~~~~~~~~~  188 (311)
T d1nr0a1         119 AVGE---GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------FKFKSTFGEH  188 (311)
T ss_dssp             EEEC---CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-------BEEEEEECCC
T ss_pred             cccc---cccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-------cccccccccc
Confidence            9975   44677999999999999999999999999999998874 78899999999999987       6677888889


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      ..+|+++.|+|++++|++++.|+.|++||+++......+.    ...+|...|++++|+|++     .+|++|+.||.|+
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-----~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-----TKIASASADKTIK  263 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----SEEEEEETTSEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC-----CEEEEEeCCCeEE
Confidence            9999999999999999999999999999999877655332    123578899999999998     7999999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |||++++             +++..+.....+...+.++.|+  +       ..|++++.||.|++||++
T Consensus       264 iwd~~t~-------------~~~~~l~~~~~~~~~~~~~~~~--~-------~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         264 IWNVATL-------------KVEKTIPVGTRIEDQQLGIIWT--K-------QALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTTT-------------EEEEEEECCSSGGGCEEEEEEC--S-------SCEEEEETTCCEEEEETT
T ss_pred             EEECCCC-------------cEEEEEECCCCccceEEEEEec--C-------CEEEEEECCCEEEEEeCC
Confidence            9999877             5666554322334455556554  4       578999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.8e-38  Score=250.91  Aligned_cols=214  Identities=15%  Similarity=0.243  Sum_probs=185.7

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..++|+||.++|++++|+|++++||+|+.     ||.|+|||+.+++.+..+..|...|.+++|+|+++++++++.|+.+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~-----Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQ-----DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEET-----TTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEEC-----CCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            56889999999999999999999999964     9999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCCcc-------------------------------------------------------------------
Q 037555          128 SVFAIQRTGTGEI-------------------------------------------------------------------  140 (298)
Q Consensus       128 ~iwd~~~~~~~~~-------------------------------------------------------------------  140 (298)
                      ++|+.........                                                                   
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9998654321100                                                                   


Q ss_pred             -------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          141 -------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       141 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                                   ....+..+..|...|++++|+|++++|++++.||.|++||++........ ....+...+.+++|+|
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSK  280 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECS
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc-ccccccCceEEEEECC
Confidence                         22334556678999999999999999999999999999999987766533 3345678899999999


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      ++     .+|++|+.||.|++||+.++             +.+..   +.+|..+|++++|+|++       .+|+||+.
T Consensus       281 ~~-----~~l~~g~~dg~i~iwd~~~~-------------~~~~~---~~~H~~~V~~l~~s~d~-------~~l~s~s~  332 (340)
T d1tbga_         281 SG-----RLLLAGYDDFNCNVWDALKA-------------DRAGV---LAGHDNRVSCLGVTDDG-------MAVATGSW  332 (340)
T ss_dssp             SS-----CEEEEEETTSCEEEEETTTC-------------CEEEE---ECCCSSCEEEEEECTTS-------SCEEEEET
T ss_pred             CC-----CEEEEEECCCEEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEeCCC-------CEEEEEcc
Confidence            98     79999999999999999876             55554   45799999999999999       89999999


Q ss_pred             CCcEEEeE
Q 037555          288 DNTVRVFQ  295 (298)
Q Consensus       288 d~~i~iw~  295 (298)
                      ||.|+|||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-37  Score=245.75  Aligned_cols=210  Identities=17%  Similarity=0.226  Sum_probs=180.7

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeC--
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSR--  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--  123 (298)
                      ..+.+.+|...|++++|+|+|++||+|+.     |+.|++||+.+++..  ..+..|..+|.+++|+|++++|++++.  
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDV-----HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEecccc-----CceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            56778899999999999999999999954     999999999887643  457789999999999999999999886  


Q ss_pred             CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555          124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA  202 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~  202 (298)
                      +..+++|+++.       ......+..|...|.+++|+|+++ .|++|+.|+.|++||+++.+...   .+..|...|++
T Consensus       125 ~~~~~v~~~~~-------~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~---~~~~~~~~i~~  194 (311)
T d1nr0a1         125 ERFGHVFLFDT-------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHS  194 (311)
T ss_dssp             SCSEEEEETTT-------CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEE
T ss_pred             ccccccccccc-------ccccccccccccccccccccccceeeeccccccccccccccccccccc---ccccccccccc
Confidence            45699999987       445667788999999999999887 48889999999999999887766   66678999999


Q ss_pred             EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec----cCCcccceEEEEEeecCCCCCCCc
Q 037555          203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD----PFACHVAAVNRMAWKTHEKPKNSR  278 (298)
Q Consensus       203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~  278 (298)
                      +.|+|++     .++++++.|+.|++||..+..             ....+.    ...+|...|++++|+|++      
T Consensus       195 v~~~p~~-----~~l~~~~~d~~v~~~d~~~~~-------------~~~~~~~~~~~~~~h~~~V~~~~~s~~~------  250 (311)
T d1nr0a1         195 VRYNPDG-----SLFASTGGDGTIVLYNGVDGT-------------KTGVFEDDSLKNVAHSGSVFGLTWSPDG------  250 (311)
T ss_dssp             EEECTTS-----SEEEEEETTSCEEEEETTTCC-------------EEEECBCTTSSSCSSSSCEEEEEECTTS------
T ss_pred             cccCccc-----ccccccccccccccccccccc-------------ccccccccccccccccccccccccCCCC------
Confidence            9999998     799999999999999998763             222221    245689999999999999      


Q ss_pred             ceEEEeeeCCCcEEEeEec
Q 037555          279 TMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       279 ~~~l~s~~~d~~i~iw~~~  297 (298)
                       .+|++++.||.|+|||++
T Consensus       251 -~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         251 -TKIASASADKTIKIWNVA  268 (311)
T ss_dssp             -SEEEEEETTSEEEEEETT
T ss_pred             -CEEEEEeCCCeEEEEECC
Confidence             899999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-36  Score=236.74  Aligned_cols=250  Identities=20%  Similarity=0.296  Sum_probs=217.2

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCE
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      .++.++.|+..+++.+.++.+|.+.|..+.+.+ .+..++..           ........+.+|...+.++.|+|++..
T Consensus        37 ~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (317)
T d1vyhc1          37 EDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH  115 (317)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-ccccccccccccccccccccccccccccccccccceeeeccCCCce
Confidence            367789999999999999999999999999984 44444443           112245566789999999999999999


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      +++++     .|+.+++||+++++.+..+.+|...+.+++|+|++++|++++.|+.|++|+...       ......+..
T Consensus       116 ~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~-------~~~~~~~~~  183 (317)
T d1vyhc1         116 IVSAS-----RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-------KECKAELRE  183 (317)
T ss_dssp             EEEEE-----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------CCEEEEECC
T ss_pred             EEeec-----cCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc-------ceeeEEEec
Confidence            99995     499999999999999999999999999999999999999999999999999987       556777788


Q ss_pred             cCCceEEEEEccCC--------------------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          151 HKRIIWSCSWNPFG--------------------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       151 ~~~~v~~~~~~~~~--------------------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                      |...+.++.|+|+.                    ..+++++.|+.|++||+++++.+.   .+.+|...|.+++|+|++ 
T Consensus       184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-  259 (317)
T d1vyhc1         184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGG-  259 (317)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSS-
T ss_pred             CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE---EEeCCCCCEEEEEECCCC-
Confidence            89999999988754                    468999999999999999988776   566789999999999998 


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          .+|++|+.||.|++||++++             +.+..   +.+|...|++++|+|++       .+|++++.||+
T Consensus       260 ----~~l~s~~~dg~i~iwd~~~~-------------~~~~~---~~~h~~~V~~~~~s~~~-------~~l~s~s~Dg~  312 (317)
T d1vyhc1         260 ----KFILSCADDKTLRVWDYKNK-------------RCMKT---LNAHEHFVTSLDFHKTA-------PYVVTGSVDQT  312 (317)
T ss_dssp             ----SCEEEEETTTEEEEECCTTS-------------CCCEE---EECCSSCEEEEEECSSS-------SCEEEEETTSE
T ss_pred             ----CEEEEEECCCeEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEeCCCe
Confidence                79999999999999999876             44444   34699999999999999       89999999999


Q ss_pred             EEEeE
Q 037555          291 VRVFQ  295 (298)
Q Consensus       291 i~iw~  295 (298)
                      |+|||
T Consensus       313 i~iWd  317 (317)
T d1vyhc1         313 VKVWE  317 (317)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=236.39  Aligned_cols=248  Identities=14%  Similarity=0.218  Sum_probs=207.6

Q ss_pred             ccccceeeeecCcccc-----cccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEE
Q 037555            3 AATRETVERHGNDGLD-----TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCC   64 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~   64 (298)
                      ++.++.|+..++....     ...+|.+.|.++.|. |.+..++++      .+|+       ....+.+|...|.+++|
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s-~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  149 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-CCCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence            3456667655544322     335788999999998 556666655      3553       24567789999999999


Q ss_pred             cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceee
Q 037555           65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL  144 (298)
Q Consensus        65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  144 (298)
                      +|++.++++++     .++.|++|++.+++.......|...|.+++|++++..+++++.|+.+++||++.       .+.
T Consensus       150 ~~~~~~l~s~~-----~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~-------~~~  217 (337)
T d1gxra_         150 SPDSKVCFSCC-----SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-------GRQ  217 (337)
T ss_dssp             CTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEE
T ss_pred             ccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cee
Confidence            99999999995     489999999999998888889999999999999999999999999999999987       444


Q ss_pred             eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555          145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG  224 (298)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg  224 (298)
                      +..+ .|...|.+++|+|++++|++++.|+.+++||++..+...    ...|...|++++|+|++     .+|++++.|+
T Consensus       218 ~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~i~~v~~s~~g-----~~l~s~s~Dg  287 (337)
T d1gxra_         218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----LHLHESCVLSLKFAYCG-----KWFVSTGKDN  287 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE----ECCCSSCEEEEEECTTS-----SEEEEEETTS
T ss_pred             eccc-ccccceEEEEEcccccccceecccccccccccccccccc----ccccccccceEEECCCC-----CEEEEEeCCC
Confidence            4443 478899999999999999999999999999999877543    34588999999999998     7999999999


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|++||+.++             +.+..+    .|...|.+++|+|++       .+|++++.||+|+|||+-
T Consensus       288 ~i~iwd~~~~-------------~~~~~~----~~~~~v~~~~~s~d~-------~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         288 LLNAWRTPYG-------------ASIFQS----KESSSVLSCDISVDD-------KYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEETTTC-------------CEEEEE----ECSSCEEEEEECTTS-------CEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCC-------------CEEEEc----cCCCCEEEEEEeCCC-------CEEEEEeCCCeEEEEEEE
Confidence            9999999876             444443    378899999999999       899999999999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=236.87  Aligned_cols=236  Identities=19%  Similarity=0.263  Sum_probs=200.6

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc-----CCCCc----------eEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE----------SHKLYGHGNELFSLCCDHQGKLVASSCKAQS   79 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~----------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~   79 (298)
                      +.+..+ .|.+.|.++.|+ |.++.++++     ++|+.          .....+|.+.|++++|+|++++|++++    
T Consensus        43 ~~~~~~-~H~~~V~~v~fs-~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~----  116 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTIS-NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----  116 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEEC-SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----
T ss_pred             eEEEEC-CCCCcEEEEEEC-CCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee----
Confidence            444555 799999999999 677777775     46631          223457999999999999999999995    


Q ss_pred             CCceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555           80 TAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS  157 (298)
Q Consensus        80 ~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  157 (298)
                       .|+.|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++|++..       .........|...|.+
T Consensus       117 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-------~~~~~~~~~~~~~v~~  188 (337)
T d1gxra_         117 -EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASC  188 (337)
T ss_dssp             -SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccc
Confidence             4999999998744  45566778999999999999999999999999999999987       5667777889999999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555          158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN  237 (298)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  237 (298)
                      ++|++++..+++++.|+.|++||+++++.+.   .+ .+...|.+++|+|++     .+|++|+.|+.|++||++..   
T Consensus       189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~---~~-~~~~~i~~l~~~~~~-----~~l~~~~~d~~i~i~d~~~~---  256 (337)
T d1gxra_         189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQ---QH-DFTSQIFSLGYCPTG-----EWLAVGMESSNVEVLHVNKP---  256 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTSS---
T ss_pred             ccccccccccccccccccccccccccceeec---cc-ccccceEEEEEcccc-----cccceecccccccccccccc---
Confidence            9999999999999999999999999887765   33 377899999999998     79999999999999999865   


Q ss_pred             cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                                ....    ...|...|++++|+|++       .+|++++.|+.|++||+.
T Consensus       257 ----------~~~~----~~~~~~~i~~v~~s~~g-------~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         257 ----------DKYQ----LHLHESCVLSLKFAYCG-------KWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ----------CEEE----ECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEETT
T ss_pred             ----------cccc----ccccccccceEEECCCC-------CEEEEEeCCCeEEEEECC
Confidence                      2222    23588999999999999       899999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.4e-35  Score=230.27  Aligned_cols=219  Identities=19%  Similarity=0.286  Sum_probs=173.2

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQ  126 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (298)
                      ..+.+.||.++|++++|+|++++|++|+     .|+.|++||+++++.+..+. .|...|++++|+|++. +++++.|+.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSAD-----AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEc-----CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            4678999999999999999999999995     48999999999998888774 6899999999999986 456677899


Q ss_pred             EEEEEeccCCCCcc------------------------------------------------------------------
Q 037555          127 FSVFAIQRTGTGEI------------------------------------------------------------------  140 (298)
Q Consensus       127 i~iwd~~~~~~~~~------------------------------------------------------------------  140 (298)
                      +++|+.........                                                                  
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998654221000                                                                  


Q ss_pred             ---------cee-eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555          141 ---------DYQ-LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       141 ---------~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (298)
                               ... .......|...|.+++|+|++++|++++.|+.|++||+.+.........+..|...|++++|+|++ 
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-  236 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-  236 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence                     000 011223577889999999999999999999999999999877766555677789999999999998 


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          .+|++|+.|+.|++||+++...             ...+.....+...|..+.|.+ +       .+|++++.|++
T Consensus       237 ----~~l~sgs~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~-~-------~~l~s~s~D~~  291 (299)
T d1nr0a2         237 ----VRLATGSLDNSVIVWNMNKPSD-------------HPIIIKGAHAMSSVNSVIWLN-E-------TTIVSAGQDSN  291 (299)
T ss_dssp             ----SEEEEEETTSCEEEEETTCTTS-------------CCEEETTSSTTSCEEEEEEEE-T-------TEEEEEETTSC
T ss_pred             ----cceEEEcCCCEEEEEECCCCCc-------------ceEEEecCCCCCcEEEEEECC-C-------CEEEEEeCCCE
Confidence                7999999999999999987532             111221233456677776654 4       58999999999


Q ss_pred             EEEeEecC
Q 037555          291 VRVFQVNV  298 (298)
Q Consensus       291 i~iw~~~~  298 (298)
                      |++||+.|
T Consensus       292 i~iWdl~~  299 (299)
T d1nr0a2         292 IKFWNVPF  299 (299)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeccC
Confidence            99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-35  Score=237.03  Aligned_cols=221  Identities=18%  Similarity=0.231  Sum_probs=177.8

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI  132 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (298)
                      ..++|+|++|+|+|++||+++     .|+.|+||++.+++  .+..+.+|..+|.+++|+|++++|++++.|+.|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~-----~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEe-----CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            357899999999999999994     58999999997664  56678899999999999999999999999999999999


Q ss_pred             ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee-eecCCCCCceEEEEEeecccc
Q 037555          133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI-LALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  211 (298)
                      ....     ......+..|...|.+++|+|+++.|++++.|+.|++|++......... .....|...|.+++|+|++  
T Consensus        81 ~~~~-----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--  153 (371)
T d1k8kc_          81 KGRT-----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--  153 (371)
T ss_dssp             ETTE-----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--
T ss_pred             cccc-----cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccc--
Confidence            8642     3445556678899999999999999999999999999999876554322 2345688899999999998  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCC--CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAP--STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN  289 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  289 (298)
                         .+|++|+.|+.|++|+..............  ........+.....|...|.+++|+|++       .+|++++.|+
T Consensus       154 ---~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~s~~~d~  223 (371)
T d1k8kc_         154 ---VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-------SRVAWVSHDS  223 (371)
T ss_dssp             ---SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-------SEEEEEETTT
T ss_pred             ---cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-------ccccccccCC
Confidence               799999999999999987653222111100  0000111222355789999999999999       8999999999


Q ss_pred             cEEEeEec
Q 037555          290 TVRVFQVN  297 (298)
Q Consensus       290 ~i~iw~~~  297 (298)
                      .|++||++
T Consensus       224 ~i~iwd~~  231 (371)
T d1k8kc_         224 TVCLADAD  231 (371)
T ss_dssp             EEEEEEGG
T ss_pred             cceEEeee
Confidence            99999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-34  Score=232.77  Aligned_cols=235  Identities=12%  Similarity=0.145  Sum_probs=189.0

Q ss_pred             CCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc
Q 037555           24 PDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV   90 (298)
Q Consensus        24 ~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~   90 (298)
                      .++|.+++|+ |++..++.+      .+|+       .+..+.+|.++|++++|+|++++|++++     .|+.|+|||+
T Consensus         7 ~~pIt~~~~s-~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-----~D~~i~vWd~   80 (371)
T d1k8kc_           7 VEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-----TDRNAYVWTL   80 (371)
T ss_dssp             SSCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-----TTSCEEEEEE
T ss_pred             CCCeEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-----CCCeEEEEee
Confidence            4678899998 566666554      3553       3567889999999999999999999995     4899999999


Q ss_pred             CCcee--eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555           91 GSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA  168 (298)
Q Consensus        91 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (298)
                      .++..  ...+..|...|.+++|+|+++.|++++.|+.+++|++......   .........|...|.+++|+|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeeccccc---cccccccccccccccccccccccccee
Confidence            86653  4446678999999999999999999999999999998864421   223344567889999999999999999


Q ss_pred             EeeCCCeEEEEEccCCcce---------------eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          169 TGSRDKTVKIWAVENKSSV---------------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       169 ~~~~dg~i~~wd~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      +|+.|+.|++||.......               ..+.....|...|.+++|+|++     .+|++++.|+.|++||+..
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-----SRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-----SEEEEEETTTEEEEEEGGG
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-----ccccccccCCcceEEeeec
Confidence            9999999999998653211               1223456788889999999998     7999999999999999987


Q ss_pred             cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .             ..+..+   ..|..+|.+++|+|++       .+|++ +.|+.+++|..
T Consensus       233 ~-------------~~~~~~---~~~~~~v~s~~fs~d~-------~~la~-g~d~~~~~~~~  271 (371)
T d1k8kc_         233 K-------------MAVATL---ASETLPLLAVTFITES-------SLVAA-GHDCFPVLFTY  271 (371)
T ss_dssp             T-------------TEEEEE---ECSSCCEEEEEEEETT-------EEEEE-ETTSSCEEEEE
T ss_pred             c-------------cceeee---ecccccceeeeecCCC-------CEEEE-EcCCceEEEEe
Confidence            6             454543   3588999999999998       66665 55888888765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-33  Score=227.81  Aligned_cols=260  Identities=18%  Similarity=0.210  Sum_probs=194.3

Q ss_pred             cccceeeeecCccccccc------------------CCCCCceeeeccCCCccccccc------CCCC-----ceEEecc
Q 037555            4 ATRETVERHGNDGLDTLE------------------SVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYG   54 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~   54 (298)
                      +.++.|+..+++.+..+.                  .|...|.+++|. |.+..++++      ++|+     .+..+.+
T Consensus        83 ~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~  161 (388)
T d1erja_          83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQG  161 (388)
T ss_dssp             SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC-CCCCcceeccccccccccccccccccccccc
Confidence            445566666666555443                  456668889998 556666665      3442     4677788


Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      |...|.++.|++++..+++++     .++.+++||..+.........+...+....+.+++++|++++.||.|++|+...
T Consensus       162 h~~~v~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         162 HEQDIYSLDYFPSGDKLVSGS-----GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccccccccccc-----cceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence            999999999999999999995     489999999998887776665555444444445889999999999999999987


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee---------eeeecCCCCCceEEEEE
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK---------QILALPPFNSSVTALSW  205 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---------~~~~~~~~~~~v~~~~~  205 (298)
                      ................|...|.+++|+|++++|++++.||.|++||+++.....         .......|...|.+++|
T Consensus       237 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  316 (388)
T d1erja_         237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT  316 (388)
T ss_dssp             CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred             CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE
Confidence            432111011122334688899999999999999999999999999998654322         11133357788999999


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe------ecCCCCCCCcc
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW------KTHEKPKNSRT  279 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~  279 (298)
                      +|++     .+|++|+.||.|++||++++             +++..   +.+|...|.++++      +|++       
T Consensus       317 s~~~-----~~l~sg~~dg~i~vwd~~~~-------------~~~~~---l~~H~~~V~~~~~~~~~~~spd~-------  368 (388)
T d1erja_         317 TQND-----EYILSGSKDRGVLFWDKKSG-------------NPLLM---LQGHRNSVISVAVANGSSLGPEY-------  368 (388)
T ss_dssp             CGGG-----CEEEEEETTSEEEEEETTTC-------------CEEEE---EECCSSCEEEEEECSSCTTCTTC-------
T ss_pred             CCCC-----CEEEEEeCCCEEEEEECCCC-------------cEEEE---EeCCCCCEEEEEEecCcccCCCC-------
Confidence            9998     79999999999999999877             55555   4479999999975      4566       


Q ss_pred             eEEEeeeCCCcEEEeEec
Q 037555          280 MQLASCGADNTVRVFQVN  297 (298)
Q Consensus       280 ~~l~s~~~d~~i~iw~~~  297 (298)
                      .+|+||+.||+|+||+++
T Consensus       369 ~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         369 NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeee
Confidence            899999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-33  Score=220.04  Aligned_cols=245  Identities=23%  Similarity=0.397  Sum_probs=213.4

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA   82 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d   82 (298)
                      .....+|.+|.+.|.++.|. |.+..++++      ++|+     .+..+.+|...|.+++|+|++.++++++     .+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~s-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~-----~~   80 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS-----AD   80 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE-----TT
T ss_pred             CCccEEEcCCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc-----cc
Confidence            44567899999999999999 566777776      4663     5788899999999999999999999995     48


Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP  162 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (298)
                      +.+.+|+....+....+..|...+.++.|+|+++.+++++.|+.+++||++.       ......+..|...+.+++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-------GYCVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc-------ceeeeEEccCCCcceeeeccc
Confidence            8899999998888888889999999999999999999999999999999987       556778888999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc---------------cCCccEEEEeecCCcEE
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR---------------QKNHGFLAVGMESGVIE  227 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~l~~g~~dg~i~  227 (298)
                      ++++|++++.|+.|++|++.+.+...   .+..+...+.++.|+|...               ...+.++++++.|+.|+
T Consensus       154 ~~~~l~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         154 DGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CCCEEEEEeCCCeEEEEeeccceeeE---EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            99999999999999999999988776   6667888999999998764               22346899999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +|+++++             .++..+   .+|...|.+++|+|++       .+|++++.||.|++||++
T Consensus       231 ~~~~~~~-------------~~~~~~---~~~~~~v~~~~~~~~~-------~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         231 MWDVSTG-------------MCLMTL---VGHDNWVRGVLFHSGG-------KFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             EEETTTT-------------EEEEEE---ECCSSCEEEEEECSSS-------SCEEEEETTTEEEEECCT
T ss_pred             EEECCCC-------------cEEEEE---eCCCCCEEEEEECCCC-------CEEEEEECCCeEEEEECC
Confidence            9999876             555554   4699999999999999       899999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-33  Score=221.73  Aligned_cols=245  Identities=10%  Similarity=0.116  Sum_probs=188.5

Q ss_pred             cccccccCCC-CCceeeeccCC-Cccccccc------CCCCc-------------eEEeccCCCceEEEEEcCCCCEEEe
Q 037555           15 DGLDTLESVP-DAVPAVFTEPP-IEDQLAWH------TLWPE-------------SHKLYGHGNELFSLCCDHQGKLVAS   73 (298)
Q Consensus        15 ~~~~~~~~~~-~~v~~~~~~~~-~~~~~~~~------~~~~~-------------~~~~~~h~~~v~~~~~s~~~~~l~~   73 (298)
                      ..+..+.+|. ..|.++.|.|. .+..++++      ++|+.             ...+..|.++|.+++|++++++|++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            3455667775 57999999964 44566655      46742             1234578899999999999999998


Q ss_pred             EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCE-EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNL-LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      ++.   +.++.+.+|+.++++.+..+.+|...|.+++|+|++.. +++++.|+.+++|+......    .........|.
T Consensus       133 ~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~----~~~~~~~~~~~  205 (325)
T d1pgua1         133 VGE---GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQG  205 (325)
T ss_dssp             EEC---CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTT
T ss_pred             eec---cccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc----ceecccccCCC
Confidence            876   45788999999999999999999999999999998764 77899999999999875221    11222334567


Q ss_pred             CceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe---eccccCCccEEEEeecCCcEEE
Q 037555          153 RIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV---GLDRQKNHGFLAVGMESGVIEL  228 (298)
Q Consensus       153 ~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~l~~g~~dg~i~v  228 (298)
                      ..|.+++|+|+ +.+|++++.|+.|++||+++++.+.   .+..|..++.++.|+   |++     .+|++++.|+.|+|
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg-----~~l~s~s~D~~i~i  277 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWLDS-----QKFATVGADATIRV  277 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEESSS-----SEEEEEETTSEEEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccccccc---cccccccccccceeeeeccCC-----CEEEEEeCCCeEEE
Confidence            88999999996 6889999999999999999988776   666777777666666   444     69999999999999


Q ss_pred             EEeeecccccccCCCCCCcceeeeeccCCcccceEEE--EEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          229 WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR--MAWKTHEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      ||++++             +++..+. ...|...+..  +.|.++        .+|++++.||.|++|||
T Consensus       278 wd~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTS-------------KCVQKWT-LDKQQLGNQQVGVVATGN--------GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTTT-------------EEEEEEE-CCTTCGGGCEEEEEEEET--------TEEEEEETTSCEEEEET
T ss_pred             EECCCC-------------CEEEEEE-ecCCcccCeEEEEEECCC--------CEEEEEECCCEEEEEEC
Confidence            999876             5555543 2334434444  444444        48899999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=222.88  Aligned_cols=247  Identities=17%  Similarity=0.213  Sum_probs=189.1

Q ss_pred             cCCCCCceeeeccCCCccccccc-----CCCCc-----eEE------------------eccCCCceEEEEEcCCCCEEE
Q 037555           21 ESVPDAVPAVFTEPPIEDQLAWH-----TLWPE-----SHK------------------LYGHGNELFSLCCDHQGKLVA   72 (298)
Q Consensus        21 ~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~-----~~~------------------~~~h~~~v~~~~~s~~~~~l~   72 (298)
                      .+|.+.|.++.|+ |+++.++++     ++|+.     +..                  ..+|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs-~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEEC-CCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            4699999999999 567777776     35531     222                  235777899999999999999


Q ss_pred             eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555           73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK  152 (298)
Q Consensus        73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +|+.     |+.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||...       .........+.
T Consensus       138 s~~~-----dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~  205 (388)
T d1erja_         138 TGAE-----DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-------GQCSLTLSIED  205 (388)
T ss_dssp             EEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEEEEEEECSS
T ss_pred             eccc-----ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-------ccccccccccc
Confidence            9954     89999999999999999999999999999999999999999999999999986       44444444444


Q ss_pred             CceEEEEEc-cCCCEEEEeeCCCeEEEEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555          153 RIIWSCSWN-PFGHEFATGSRDKTVKIWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       153 ~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      .. ..+.+. +++++|++++.|+.|++||.+++.....+.    ...+|...|.+++|+|++     .+|++|+.|+.|+
T Consensus       206 ~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l~s~~~d~~i~  279 (388)
T d1erja_         206 GV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-----QSVVSGSLDRSVK  279 (388)
T ss_dssp             CE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-----SEEEEEETTSEEE
T ss_pred             cc-ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-----CEEEEEECCCcEE
Confidence            44 445555 488999999999999999999877655332    223578899999999998     7999999999999


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +||++............ .......   ...|...|.+++|+|++       .+|++++.||.|++||++
T Consensus       280 iwd~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~v~~~~~s~~~-------~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         280 LWNLQNANNKSDSKTPN-SGTCEVT---YIGHKDFVLSVATTQND-------EYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             EEEC----------------CEEEE---EECCSSCEEEEEECGGG-------CEEEEEETTSEEEEEETT
T ss_pred             EEeccCCcccccccccc-ccceeee---cccccceEEEEEECCCC-------CEEEEEeCCCEEEEEECC
Confidence            99998764332211110 1111222   33588999999999999       899999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-31  Score=213.38  Aligned_cols=212  Identities=15%  Similarity=0.138  Sum_probs=172.0

Q ss_pred             CceEEeccCC-CceEEEEEcC--CCCEEEeEeccCCCCceEEEEEEcCCceeee--------ccccccccEEEEEEcCCC
Q 037555           47 PESHKLYGHG-NELFSLCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--------RLQSHSLTVTQIRFSHDD  115 (298)
Q Consensus        47 ~~~~~~~~h~-~~v~~~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--------~~~~~~~~v~~~~~~~~~  115 (298)
                      +.+..+.+|. ..|++++|+|  ++.+|++|+     .||+|+|||+..++...        .+..|..+|.+++|++++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs-----~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~  127 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-----ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG  127 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-----TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe-----CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC
Confidence            3567788885 6799999998  578999995     49999999987554322        244578899999999999


Q ss_pred             CEEEEEeC--CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE-EEEeeCCCeEEEEEccCCcceeeeee
Q 037555          116 NLLLSVSR--DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE-FATGSRDKTVKIWAVENKSSVKQILA  192 (298)
Q Consensus       116 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~  192 (298)
                      +++++++.  ++.+++|+.+.       ...+..+..|...|.+++|+|++.+ +++++.|+.+++||.+..+.......
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         128 RRLCVVGEGRDNFGVFISWDS-------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             SEEEEEECCSSCSEEEEETTT-------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             CccceeeccccceEEEEeecc-------cccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence            99887764  67899999886       5667788899999999999998764 77899999999999988777665556


Q ss_pred             cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee---
Q 037555          193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK---  269 (298)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---  269 (298)
                      ...+...|.+++|+|+..    .++++++.|+.|++||++++             +.+..   +.+|..++.++.|+   
T Consensus       201 ~~~~~~~v~~v~~~pd~~----~~l~s~~~d~~i~iwd~~~~-------------~~~~~---l~~~~~~v~~~~~s~~~  260 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSG----EFVITVGSDRKISCFDGKSG-------------EFLKY---IEDDQEPVQGGIFALSW  260 (325)
T ss_dssp             SSCTTCCEEEEEECSTTC----CEEEEEETTCCEEEEETTTC-------------CEEEE---CCBTTBCCCSCEEEEEE
T ss_pred             ccCCCCccEEeeeccccc----eeccccccccceeeeeeccc-------------ccccc---ccccccccccceeeeec
Confidence            667888999999999753    78999999999999998876             44444   44577766665555   


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      |++       .+|++++.|+.|+|||++
T Consensus       261 ~dg-------~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         261 LDS-------QKFATVGADATIRVWDVT  281 (325)
T ss_dssp             SSS-------SEEEEEETTSEEEEEETT
T ss_pred             cCC-------CEEEEEeCCCeEEEEECC
Confidence            566       799999999999999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-31  Score=211.06  Aligned_cols=243  Identities=18%  Similarity=0.285  Sum_probs=181.7

Q ss_pred             cCcccccccCCCCCcee-eeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCC-
Q 037555           13 GNDGLDTLESVPDAVPA-VFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS-   79 (298)
Q Consensus        13 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~-   79 (298)
                      .-+....|++|.+.|.. +.+   .++.++++      ++|+     ++.++.+|.+.|.+++|+|+  +|++++.|.. 
T Consensus         5 ~~~~~~~l~GH~~~V~s~~~~---~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             CCCCCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             CCCcCEEECCcCCceEEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            34566778999998853 333   35667765      4663     57788899999999999874  7888865330 


Q ss_pred             --------------------------------------------------------------------------CCceEE
Q 037555           80 --------------------------------------------------------------------------TAAAEI   85 (298)
Q Consensus        80 --------------------------------------------------------------------------~~d~~i   85 (298)
                                                                                                ..++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence                                                                                      123334


Q ss_pred             EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555           86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH  165 (298)
Q Consensus        86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (298)
                      ++||....+.+..+.+|...+..+  .+++.++++++.||.|++||++.       ...+..+..|...+.++.++  ++
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~~--~~  228 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVET-------GNCIHTLTGHQSLTSGMELK--DN  228 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTT-------CCEEEEECCCCSCEEEEEEE--TT
T ss_pred             EEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeeccc-------ceeeeEecccccceeEEecC--CC
Confidence            444444444444445555554444  44678999999999999999987       56678888899999888776  56


Q ss_pred             EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555          166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS  245 (298)
Q Consensus       166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  245 (298)
                      +|++++.|+.|++||+...+....+.....|...+.++.+++       .++++|+.||.|++||++++           
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~s~Dg~i~iwd~~tg-----------  290 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-------NFVITSSDDGTVKLWDLKTG-----------  290 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-------SEEEEEETTSEEEEEETTTC-----------
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC-------CeeEEEcCCCEEEEEECCCC-----------
Confidence            999999999999999998887775545555667777777765       68999999999999999887           


Q ss_pred             Ccceeeeec--cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc----EEEeEecC
Q 037555          246 TANIIIRFD--PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT----VRVFQVNV  298 (298)
Q Consensus       246 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~----i~iw~~~~  298 (298)
                        +.+..+.  ...+|...|++++|+|++       .+|++|+.||+    |++||+++
T Consensus       291 --~~i~~~~~~~~~~~~~~v~~v~~s~~~-------~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         291 --EFIRNLVTLESGGSGGVVWRIRASNTK-------LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             --CEEEEEEECTTGGGTCEEEEEEECSSE-------EEEEEECSSSSSCCEEEEEECCC
T ss_pred             --CEEEEEecccCCCCCCCEEEEEECCCC-------CEEEEEeCCCCCeeEEEEEeCCC
Confidence              4444442  234688899999999999       89999999985    99999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-31  Score=214.72  Aligned_cols=200  Identities=17%  Similarity=0.213  Sum_probs=174.2

Q ss_pred             cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCC----
Q 037555           15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS----   79 (298)
Q Consensus        15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~----   79 (298)
                      +...+|.||.+.|.++.|. |.+..++++      ++|+     .+..+..|..+|.+++|+|++.++++++.+..    
T Consensus        46 ~~~~tL~GH~~~I~~l~~s-~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeEEECCCCCCEEEEEEC-CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            4456789999999999999 567777776      4664     46778899999999999999999999877641    


Q ss_pred             ------------------------------------------------------------------------------CC
Q 037555           80 ------------------------------------------------------------------------------TA   81 (298)
Q Consensus        80 ------------------------------------------------------------------------------~~   81 (298)
                                                                                                    ..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence                                                                                          35


Q ss_pred             ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE--eeccCCceEEEE
Q 037555           82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR--QEAHKRIIWSCS  159 (298)
Q Consensus        82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~v~~~~  159 (298)
                      |+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++|++...       .....  ...+...|.+++
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-------~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-------QELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCTTCCSCEEEEE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-------ccccccccccccCceEEEE
Confidence            789999999999999999999999999999999999999999999999999863       33332  345667899999


Q ss_pred             EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      |+|++++|++|+.||.|++||+.+++.+.   .+.+|..+|++++|+|++     .+|++|+.||.|+|||
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~H~~~V~~l~~s~d~-----~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKADRAG---VLAGHDNRVSCLGVTDDG-----MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCC-----CEEEEEccCCEEEEeC
Confidence            99999999999999999999999988777   777899999999999998     7999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.2e-30  Score=202.58  Aligned_cols=237  Identities=17%  Similarity=0.224  Sum_probs=179.8

Q ss_pred             CcccccccCCCCCceeeeccCCCccccccc------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEE
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL   87 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~v   87 (298)
                      ++.+.++.+|...|.++.++|     ++++      ++|+......+|...|.++++++++ .+++++.     |++|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~-----D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISW-----DDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEET-----TTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCC-eEEEEee-----cccccc
Confidence            467889999999999999984     5554      5888877888999999999998765 5677754     778888


Q ss_pred             EEcCCce----------------------------------eeeccccccccEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Q 037555           88 WEVGSWK----------------------------------AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-QFSVFAI  132 (298)
Q Consensus        88 w~~~~~~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~  132 (298)
                      |++...+                                  .+..+. +..  ...+++++++.+++++.++ .+++|++
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNS--PGSAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccc--eeeeeeccCcceeeeccccceeeeeec
Confidence            8764321                                  111111 111  2245566777888777764 7999998


Q ss_pred             ccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc-
Q 037555          133 QRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR-  210 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  210 (298)
                      ..       ....... ..+...+++++|+|++.+|++|+.||.|++||+.+.....  ..+..|...|.+++|+|.+. 
T Consensus       149 ~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         149 SD-------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             TE-------EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC--
T ss_pred             cc-------cceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc--ccccccccccceeeecccccc
Confidence            75       3333333 3577889999999999999999999999999998876543  23567889999999998653 


Q ss_pred             ----cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          211 ----QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       211 ----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                          ..++.++++|+.|+.|++||++...            ..+..   +.+|...|++++|+|++        .|++++
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~------------~~~~~---~~~h~~~V~~v~~~~~~--------~l~s~g  276 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPM------------KIIKA---LNAHKDGVNNLLWETPS--------TLVSSG  276 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTT------------CCEEE---TTSSTTCEEEEEEEETT--------EEEEEE
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCC------------eEEEE---eCCCCCCeEEEEECCCC--------EEEEEE
Confidence                2344799999999999999987542            22222   55799999999999987        689999


Q ss_pred             CCCcEEEeEe
Q 037555          287 ADNTVRVFQV  296 (298)
Q Consensus       287 ~d~~i~iw~~  296 (298)
                      .|++|++|++
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-29  Score=203.39  Aligned_cols=226  Identities=19%  Similarity=0.241  Sum_probs=168.5

Q ss_pred             CceEEeccCCCce-EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555           47 PESHKLYGHGNEL-FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR  125 (298)
Q Consensus        47 ~~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (298)
                      |+..+|+||.+.| +|++|  ++++|++|+     .|+.|+|||+.+++.+.++.+|...|.+++|+|+ .+|++++.|+
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~~~l~tgs-----~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEE-----TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             CCcEEECCcCCCcEEEEEE--CCCEEEEEe-----CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            4678899999886 66665  578999995     4999999999999999999999999999999985 5889999999


Q ss_pred             eEEEEEeccCCCCcc-----------------------------------------------------------------
Q 037555          126 QFSVFAIQRTGTGEI-----------------------------------------------------------------  140 (298)
Q Consensus       126 ~i~iwd~~~~~~~~~-----------------------------------------------------------------  140 (298)
                      .|++|+.........                                                                 
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999888764321000                                                                 


Q ss_pred             -----------------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555          141 -----------------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS  185 (298)
Q Consensus       141 -----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  185 (298)
                                                         ..+.+.....+...+.++.|+|++.++++++.|+.|++||++++.
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                                               001112223345567788899999999999999999999999988


Q ss_pred             ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC---------CC-------Ccce
Q 037555          186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA---------PS-------TANI  249 (298)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---------~~-------~~~~  249 (298)
                      .+.   .+.+|...|.++++++       .+|++|+.||.|++||+++..........         +.       ....
T Consensus       235 ~~~---~~~~h~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~  304 (355)
T d1nexb2         235 LMY---TLQGHTALVGLLRLSD-------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ  304 (355)
T ss_dssp             EEE---EECCCSSCCCEEEECS-------SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTE
T ss_pred             ccc---cccccccccccccccc-------ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCE
Confidence            777   6678999999999876       58999999999999998765322110000         00       0011


Q ss_pred             eee--------e-ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555          250 IIR--------F-DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV  298 (298)
Q Consensus       250 ~~~--------~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~  298 (298)
                      +..        + ..+.+|..+|.+++|+|+        .++++++.||.++||.++|
T Consensus       305 i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--------~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKDADQIWSVNFKGK--------TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTTCSEEEEEEEETT--------EEEEEEESSSCEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEecCCCCCEEEEEEcCC--------eEEEEEECCCcEEEEEEeC
Confidence            111        1 124578899999999986        4888999999988877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=200.75  Aligned_cols=208  Identities=18%  Similarity=0.341  Sum_probs=162.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ..+.|+||.+.|.+ +++++|++||+|+.     |+.|+|||+.+++++.++.+|...|.+++|+|+  +|++++.|+.+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~-----Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSD-----DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEET-----TSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeC-----CCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            56789999999865 35667899999954     999999999999999999999999999999874  89999999999


Q ss_pred             EEEEeccCCCCcc-------------------------------------------------------------------
Q 037555          128 SVFAIQRTGTGEI-------------------------------------------------------------------  140 (298)
Q Consensus       128 ~iwd~~~~~~~~~-------------------------------------------------------------------  140 (298)
                      ++|+.........                                                                   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            9998754221000                                                                   


Q ss_pred             ------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          141 ------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       141 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                            ....+..+..|...+  ..+.+++.++++++.||.|++||++..+.+.   .+..|...+.++++++       
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~-------  227 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKD-------  227 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEE---EECCCCSCEEEEEEET-------
T ss_pred             EEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeee---EecccccceeEEecCC-------
Confidence                  011122223333333  3345578899999999999999999888776   6667888888887765       


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      .+|++|+.|+.|++||+...             +....+.....|...+.++.+++         .++++++.||+|++|
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTG-------------QCLQTLQGPNKHQSAVTCLQFNK---------NFVITSSDDGTVKLW  285 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTC-------------CEEEEECSTTSCSSCEEEEEECS---------SEEEEEETTSEEEEE
T ss_pred             CEEEEEcCCCEEEEEecccc-------------cccccccccceeeeceeecccCC---------CeeEEEcCCCEEEEE
Confidence            68999999999999999876             44455554556778888877764         689999999999999


Q ss_pred             Eec
Q 037555          295 QVN  297 (298)
Q Consensus       295 ~~~  297 (298)
                      |++
T Consensus       286 d~~  288 (342)
T d2ovrb2         286 DLK  288 (342)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.6e-30  Score=199.31  Aligned_cols=211  Identities=17%  Similarity=0.327  Sum_probs=153.3

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      .+..+.+|...|+|++|  ++++||+|+.     |+.|+|||+++++++.++.+|...|.+++|  ++++|++++.|+.|
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~-----Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLR-----DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEES-----SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc
Confidence            34556678889998765  7899999954     999999999999999999999999999887  57899999999999


Q ss_pred             EEEEeccCCCCcc-------------------------------------------------------------------
Q 037555          128 SVFAIQRTGTGEI-------------------------------------------------------------------  140 (298)
Q Consensus       128 ~iwd~~~~~~~~~-------------------------------------------------------------------  140 (298)
                      ++|++........                                                                   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            9999865431100                                                                   


Q ss_pred             ---------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555          141 ---------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ  211 (298)
Q Consensus       141 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (298)
                               ..+.+..+..+...+..+.++  +..+++++.||.|++||+++...+.   ....+...+..+.  ++.  
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~~~--~~~--  228 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIR--FDN--  228 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEE--CCS--
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeee---eecccceeeeecc--ccc--
Confidence                     111222333344444444443  5678888888888888888777665   5555666665443  344  


Q ss_pred             CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555          212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV  291 (298)
Q Consensus       212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  291 (298)
                         .+|++|+.||.|++||+.........    .....+..   +.+|...|++++|+  +       .+|+|++.||+|
T Consensus       229 ---~~l~sg~~dg~i~iwd~~~~~~~~~~----~~~~~~~~---~~~H~~~V~~v~~d--~-------~~l~s~s~Dg~i  289 (293)
T d1p22a2         229 ---KRIVSGAYDGKIKVWDLVAALDPRAP----AGTLCLRT---LVEHSGRVFRLQFD--E-------FQIVSSSHDDTI  289 (293)
T ss_dssp             ---SEEEEEETTSCEEEEEHHHHTSTTSC----TTTTEEEE---ECCCSSCCCCEEEC--S-------SCEEECCSSSEE
T ss_pred             ---eEEEEEcCCCEEEEEECCCCcccccc----CCceeeEE---ecCCCCCEEEEEEc--C-------CEEEEEecCCEE
Confidence               68999999999999998765332210    01122333   45799999999995  4       689999999999


Q ss_pred             EEeE
Q 037555          292 RVFQ  295 (298)
Q Consensus       292 ~iw~  295 (298)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-28  Score=201.78  Aligned_cols=131  Identities=17%  Similarity=0.175  Sum_probs=98.9

Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee---ecCCCCCceEEEEEeeccccCCccEEEEeecCC---
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL---ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG---  224 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg---  224 (298)
                      +...+.+++|+|++ +|++|+.||.|++||+++++.+..+.   .+.+|..+|++++|+|++     .+|++|+.|+   
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-----~~l~sgs~D~t~~  256 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-----SLLAIAHDSNSFG  256 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-----TEEEEEEEETTEE
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-----ceeeeecCCCCcc
Confidence            34567899999987 89999999999999999887765332   345688999999999998     7999999887   


Q ss_pred             cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .|++||+.++..........   ........+.+|...|++++|+|++       ++|+|++.|++|++||++
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~---~~~~~~~~~~gH~~~V~~l~fspd~-------~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPT---HSSQASLGEFAHSSWVMSLSFNDSG-------ETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSSS-------SEEEEEETTSEEEEEETT
T ss_pred             eeeecccccceeeeeecccc---ccccceeeeecccCceeeeccCCCC-------CeeEEECCCCEEEEEECC
Confidence            48999998763222111110   1111122256899999999999999       899999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.2e-28  Score=194.42  Aligned_cols=233  Identities=6%  Similarity=-0.028  Sum_probs=163.6

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCC-CCEEEEEeC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHD-DNLLLSVSR  123 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~  123 (298)
                      .++...+|.+.|++|+|+|++++||+|+.     |++|+|||++++...   ....+|..+|.+++|+|+ +.+|++|+.
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~-----Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSW-----DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEEC-----CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            45667899999999999999999999964     999999998765432   223369999999999986 458999999


Q ss_pred             CCeEEEEEeccCCCCcc------ce----------------------------------eeeEEeec--cCCceEEEEEc
Q 037555          124 DRQFSVFAIQRTGTGEI------DY----------------------------------QLIARQEA--HKRIIWSCSWN  161 (298)
Q Consensus       124 dg~i~iwd~~~~~~~~~------~~----------------------------------~~~~~~~~--~~~~v~~~~~~  161 (298)
                      ||.|++|++........      ..                                  ........  .......+.+.
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            99999999875432110      00                                  00000000  01122344566


Q ss_pred             cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555          162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST  241 (298)
Q Consensus       162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  241 (298)
                      +.+..+++++.|+.|++||++.................+.+..+.+...    ..+++++.||.+.+|+...........
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ----EGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG----CEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC----CEEEeecCCCeEEEEEecCCcceeecc
Confidence            7788999999999999999987766554434444556677777766543    789999999999999987543222110


Q ss_pred             CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      . ...............|...|++++|+|++       .+|+||+.||.|++||++
T Consensus       234 ~-~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-------~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         234 K-RFAFRCHRLNLKDTNLAYPVNSIEFSPRH-------KFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             T-CEEEECCCCCTTCCSSCCCEEEEEECTTT-------CCEEEEETTSCEEEEETT
T ss_pred             c-cceeeeeeeccCCCcccccceeEEecCCc-------cEEEEECCCCEEEEEECC
Confidence            0 00001111122245677889999999999       899999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.3e-26  Score=181.32  Aligned_cols=214  Identities=14%  Similarity=0.236  Sum_probs=159.8

Q ss_pred             ccccceeeeecCcccccc-cCCCCCceeeeccCCCccccccc-----CCCCc----------------------------
Q 037555            3 AATRETVERHGNDGLDTL-ESVPDAVPAVFTEPPIEDQLAWH-----TLWPE----------------------------   48 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~----------------------------   48 (298)
                      ++.++.|+..+|+.+..+ .+|...|.++.+.| .+..++.+     .+|+.                            
T Consensus        33 Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  111 (299)
T d1nr0a2          33 EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG  111 (299)
T ss_dssp             TSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cceeecccceeeEEEeccCCcccccccccccccccccccccccccc
Confidence            566788888888888887 47888999998884 34333222     11110                            


Q ss_pred             ----------eE-------EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEE
Q 037555           49 ----------SH-------KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIR  110 (298)
Q Consensus        49 ----------~~-------~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~  110 (298)
                                +.       .-......+.+++|+|++++|++++     .|+.|++||+++++... ....|...|.+++
T Consensus       112 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~  186 (299)
T d1nr0a2         112 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG-----QDSKVHVYKLSGASVSEVKTIVHPAEITSVA  186 (299)
T ss_dssp             SCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE-----TTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc
Confidence                      00       0011334678888999999999985     48999999998776543 2446899999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555          111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  190 (298)
                      |+|++++|++++.|+.|++||+.....    ......+..|...|++++|+|++++|++|+.||.|++||+++.......
T Consensus       187 ~~~~~~~l~~~~~d~~i~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         187 FSNNGAFLVATDQSRKVIPYSVANNFE----LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTE----ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             ccccccccccccccccccccccccccc----ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence            999999999999999999999986432    2233455678999999999999999999999999999999887654433


Q ss_pred             eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      .....+...+.++.|.+ +     .+|++++.|+.|++||+.
T Consensus       263 ~~~~~~~~~v~~~~~~~-~-----~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         263 IKGAHAMSSVNSVIWLN-E-----TTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTSSTTSCEEEEEEEE-T-----TEEEEEETTSCEEEEECC
T ss_pred             EecCCCCCcEEEEEECC-C-----CEEEEEeCCCEEEEEecc
Confidence            23333445677666654 4     589999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.9e-27  Score=184.20  Aligned_cols=210  Identities=18%  Similarity=0.259  Sum_probs=155.0

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF  127 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (298)
                      ++++|.||..+|++++|+|    |++|+     .||+|++||+.++.     ..|...|.++.+++++ .+++++.|+++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs-----~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGS-----YDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEE-----TTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEe-----CCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccc
Confidence            5789999999999999987    88995     49999999987643     4689999999998754 67899999999


Q ss_pred             EEEEeccCCCCcc---------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-eEEEE
Q 037555          128 SVFAIQRTGTGEI---------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-TVKIW  179 (298)
Q Consensus       128 ~iwd~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w  179 (298)
                      ++|++........                           ....+..+. +..  ...+++++++.+++++.++ .+++|
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNS--PGSAVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccc--eeeeeeccCcceeeeccccceeeee
Confidence            9998765321110                           001111111 112  2345677788888888765 69999


Q ss_pred             EccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc
Q 037555          180 AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH  259 (298)
Q Consensus       180 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (298)
                      ++...+....  ....+...+++++|+|++     .+|++|+.||.|++||+.+.             ....  ..+.+|
T Consensus       147 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~-----~~l~~g~~dg~i~i~d~~~~-------------~~~~--~~~~~h  204 (287)
T d1pgua2         147 KLSDLEVSFD--LKTPLRAKPSYISISPSE-----TYIAAGDVMGKILLYDLQSR-------------EVKT--SRWAFR  204 (287)
T ss_dssp             ETTEEEEEEE--CSSCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT-------------EEEE--CCSCCC
T ss_pred             eccccceeee--eeeccCCceeEEEeccCc-----cccccccccccccceeeccc-------------cccc--cccccc
Confidence            9876554432  223467889999999998     79999999999999999765             2222  125579


Q ss_pred             cceEEEEEeecCCCC---CCCcceEEEeeeCCCcEEEeEec
Q 037555          260 VAAVNRMAWKTHEKP---KNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       260 ~~~v~~~~~~~~~~~---~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..+|.+++|+|.+..   ...++.+|++++.|++|++||++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            999999999987531   12234789999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-26  Score=190.41  Aligned_cols=230  Identities=12%  Similarity=0.148  Sum_probs=155.1

Q ss_pred             CCCceEEEEEcCC-----CCEEEeEeccCCCCceEEEEEEcCCce------------------eeeccccccccEEEEEE
Q 037555           55 HGNELFSLCCDHQ-----GKLVASSCKAQSTAAAEIWLWEVGSWK------------------AMGRLQSHSLTVTQIRF  111 (298)
Q Consensus        55 h~~~v~~~~~s~~-----~~~l~~~~~~~~~~d~~i~vw~~~~~~------------------~~~~~~~~~~~v~~~~~  111 (298)
                      +...+..++|.++     +.++++++     .|+.+++|++....                  .......+...+.+++|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATD-----VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI  192 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEE-----TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred             CCCceEEEEEecCCCcccccEEEEEc-----CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEE
Confidence            4556778888775     45778884     48999999974221                  11112335566889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC---eEEEEEccCCccee
Q 037555          112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK---TVKIWAVENKSSVK  188 (298)
Q Consensus       112 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~  188 (298)
                      +|++ +|++|+.||.|++||+.+...... ......+.+|..+|.+++|+|++++|++|+.|+   .|++||+++++.+.
T Consensus       193 s~dg-~lasgs~Dg~i~iwd~~~~~~~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~  270 (393)
T d1sq9a_         193 SERG-LIATGFNNGTVQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG  270 (393)
T ss_dssp             CTTS-EEEEECTTSEEEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CCCC-EEEEEeCCCcEEEEeecccccccc-cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeee
Confidence            9987 889999999999999986321110 122334567899999999999999999999887   49999999887665


Q ss_pred             eee----------ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce---eeeecc
Q 037555          189 QIL----------ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI---IIRFDP  255 (298)
Q Consensus       189 ~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~  255 (298)
                      .+.          .+.+|...|++++|+|++     .+|++|+.|+.|+|||+++++.......+......   ...+.+
T Consensus       271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-----~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~  345 (393)
T d1sq9a_         271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE  345 (393)
T ss_dssp             EECBC--------CCBSBSSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             eeccccccccceeeeecccCceeeeccCCCC-----CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECC
Confidence            332          223688999999999998     79999999999999999887332221111110000   000000


Q ss_pred             --CCcccceEEEEEeecCCCC---CCCcceEEEeeeCCCcEEEeEe
Q 037555          256 --FACHVAAVNRMAWKTHEKP---KNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       256 --~~~~~~~v~~~~~~~~~~~---~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                        .......+.++.|.+.+..   .......|++++.|+.|++|.-
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         346 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence              0001234667777665421   1112356899999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=185.49  Aligned_cols=159  Identities=8%  Similarity=-0.025  Sum_probs=134.1

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ  133 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (298)
                      +|...|.+++|+|||++|++++.   ..+..|++||.++++.. .+..|...|.+++|+|++++|++++.++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~---~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGT---REGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEE---TTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEc---CCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccc
Confidence            69999999999999999998865   23458999999877654 566799999999999999999999999999999998


Q ss_pred             cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee----------CCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS----------RDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      .       ......+..|...+.+++|+|++++|+.+.          .++.+++||+.+++...    +..+...+..+
T Consensus       116 ~-------~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~----~~~~~~~~~~~  184 (360)
T d1k32a3         116 T-------GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA----ATTENSHDYAP  184 (360)
T ss_dssp             T-------CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE----CSCSSSBEEEE
T ss_pred             c-------cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee----ecccccccccc
Confidence            7       555667778888999999999999998653          34569999999876543    33467788899


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                      +|+|++     ..|++++.++.+.+|+..
T Consensus       185 ~~spdg-----~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         185 AFDADS-----KNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EECTTS-----CEEEEEESCCCCCEECSS
T ss_pred             cccCCC-----CEEEEEeCCCceEccccc
Confidence            999999     799999999999999753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=173.72  Aligned_cols=241  Identities=13%  Similarity=0.095  Sum_probs=157.5

Q ss_pred             ccccccCCCCCceeeeccCCCccccccc------CCCC--------ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCC
Q 037555           16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQST   80 (298)
Q Consensus        16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~   80 (298)
                      .++..++|.+.|.++.|. |.+..++++      ++|+        ......+|..+|++++|+|++ .+|++|+     
T Consensus         3 ~v~~~~~h~d~I~~l~fs-p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~-----   76 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-----   76 (342)
T ss_dssp             EEECSSCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-----
T ss_pred             eEEcCCCCCCCEEEEEEe-CCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc-----
Confidence            466788999999999999 677777776      5674        133444799999999999864 5788885     


Q ss_pred             CceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEE---------------------------------------
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLS---------------------------------------  120 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~---------------------------------------  120 (298)
                      .|+.|++|+............+. .......+.++...+++                                       
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            48999999987654443332222 22222233334444444                                       


Q ss_pred             ---------EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCccee--
Q 037555          121 ---------VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVK--  188 (298)
Q Consensus       121 ---------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~--  188 (298)
                               ++.|+.|++|++......    ........+...+.+..+.+ ++..+++++.||.+.+|+........  
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             eccCCceeeecCCCcEEEEecccCccc----ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence                     444455555544432211    11111222334455555544 67889999999999999987543211  


Q ss_pred             ----e------eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555          189 ----Q------ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC  258 (298)
Q Consensus       189 ----~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                          .      ......|...+++++|+|++     .+|++|+.||.|++||+++.             +.+..+..  .
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-----~~lasg~~Dg~v~vWD~~~~-------------~~l~~~~~--~  292 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-----KFLYTAGSDGIISCWNLQTR-------------KKIKNFAK--F  292 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTT-----CCEEEEETTSCEEEEETTTT-------------EEEEECCC--C
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCc-----cEEEEECCCCEEEEEECCCC-------------cEEEEecC--C
Confidence                0      01123456678999999998     79999999999999999876             55554421  2


Q ss_pred             ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      |  .+..++|+|++       .+|++++.|+.+++|.
T Consensus       293 ~--~~~~~~~s~~~-------~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         293 N--EDSVVKIACSD-------NILCLATSDDTFKTNA  320 (342)
T ss_dssp             S--SSEEEEEEECS-------SEEEEEEECTHHHHCS
T ss_pred             C--CCEEEEEEeCC-------CEEEEEEcCCcEEEee
Confidence            3  34457788888       7888888888877764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.3e-24  Score=175.31  Aligned_cols=188  Identities=10%  Similarity=0.085  Sum_probs=154.5

Q ss_pred             EEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCC
Q 037555           61 SLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGT  137 (298)
Q Consensus        61 ~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  137 (298)
                      .-.||| ||+++|+++      ++.|++||+.++..++ + .|...|.+++|+|||++|++++.+.  .|++||....  
T Consensus         7 ~~~fSP~dG~~~a~~~------~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~--   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG--   76 (360)
T ss_dssp             EEEEEECGGGCEEEEE------TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC--
T ss_pred             cccccCCCCCEEEEEE------CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC--
Confidence            467999 999999985      5799999998877655 3 5899999999999999988776553  7999999863  


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEE
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL  217 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  217 (298)
                            ....+..|...|.+++|+|++++|++++.++.+++|++.+.+...   .+..+...+.+++|+|++     .+|
T Consensus        77 ------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg-----~~l  142 (360)
T d1k32a3          77 ------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNS-----RFI  142 (360)
T ss_dssp             ------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTS-----CEE
T ss_pred             ------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhccce-----eee
Confidence                  245667899999999999999999999999999999999888766   445577888999999999     677


Q ss_pred             EEee----------cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555          218 AVGM----------ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA  287 (298)
Q Consensus       218 ~~g~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  287 (298)
                      +.+.          .++.+++|+..++             ....    ...+...+..++|+|++       .+|++++.
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~-------------~~~~----~~~~~~~~~~~~~spdg-------~~l~~~s~  198 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGR-------------KIFA----ATTENSHDYAPAFDADS-------KNLYYLSY  198 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTT-------------EEEE----CSCSSSBEEEEEECTTS-------CEEEEEES
T ss_pred             eeeccccccceeeccccceeeeccccC-------------ceee----ecccccccccccccCCC-------CEEEEEeC
Confidence            7543          3457899998765             2222    23467788899999999       89999999


Q ss_pred             CCcEEEeEe
Q 037555          288 DNTVRVFQV  296 (298)
Q Consensus       288 d~~i~iw~~  296 (298)
                      |+.+++|+.
T Consensus       199 ~~~~~~~d~  207 (360)
T d1k32a3         199 RSLDPSPDR  207 (360)
T ss_dssp             CCCCCEECS
T ss_pred             CCceEcccc
Confidence            999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-21  Score=153.02  Aligned_cols=201  Identities=16%  Similarity=0.250  Sum_probs=156.8

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC----------------------------
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------------------------   47 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------------------------   47 (298)
                      .++.++.|+..+++++.++.+|.+.|.++.+.   +..++++      .+|.                            
T Consensus        33 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (293)
T d1p22a2          33 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV  109 (293)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccccccccccccccccccccccccccee
Confidence            36778899999999999999999999988875   2334333      1110                            


Q ss_pred             --------------------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEE
Q 037555           48 --------------------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT  107 (298)
Q Consensus        48 --------------------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~  107 (298)
                                          ....+..|...|.++.+.+  ..+++++     .|+.|++||+.+++.+..+.++...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s-----~d~~i~~~d~~~~~~~~~~~~~~~~v~  182 (293)
T d1p22a2         110 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS-----GDRTIKVWNTSTCEFVRTLNGHKRGIA  182 (293)
T ss_dssp             EEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE-----TTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             ecccccceeEeeccccccccccccccccccccccceecc--ccccccc-----CCCceeeecCCCCcEEEEEcccccccc
Confidence                                1233456777787777765  3566664     489999999999999999999999998


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-
Q 037555          108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-  186 (298)
Q Consensus       108 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-  186 (298)
                      .+.++  +..+++++.||.|++||++.       ...+.....+...+..  +.+++.+|++++.||.|++||+..... 
T Consensus       183 ~~~~~--~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~  251 (293)
T d1p22a2         183 CLQYR--DRLVVSGSSDNTIRLWDIEC-------GACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDP  251 (293)
T ss_dssp             EEEEE--TTEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             cccCC--CCeEEEecCCCEEEEEeccc-------ceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccc
Confidence            88775  56899999999999999987       5567777778887765  456788999999999999999865322 


Q ss_pred             -----eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          187 -----VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       187 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                           ...+..+.+|...|++++|++       .+|++|+.||.|++||
T Consensus       252 ~~~~~~~~~~~~~~H~~~V~~v~~d~-------~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         252 RAPAGTLCLRTLVEHSGRVFRLQFDE-------FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCTTTTEEEEECCCSSCCCCEEECS-------SCEEECCSSSEEEEEC
T ss_pred             cccCCceeeEEecCCCCCEEEEEEcC-------CEEEEEecCCEEEEeC
Confidence                 123346678999999999964       5799999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.7e-21  Score=156.01  Aligned_cols=209  Identities=12%  Similarity=0.199  Sum_probs=150.0

Q ss_pred             cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEec--cCCCceEEEEEcCCC
Q 037555            2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLY--GHGNELFSLCCDHQG   68 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~--~h~~~v~~~~~s~~~   68 (298)
                      .++.++.|+..+++.+..+.+|.+.|.++.+.+ . ..++++      .+|.     ......  .+...+..+.+++++
T Consensus        31 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (355)
T d1nexb2          31 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  108 (355)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-C-CEEEEEeccccccccccccccccccccccccccccccccccccc
Confidence            356789999999999999999999999999985 3 344443      2332     111111  222234445556666


Q ss_pred             CEEEeEeccCCCCceEEEEEE-----------------------------------------------------------
Q 037555           69 KLVASSCKAQSTAAAEIWLWE-----------------------------------------------------------   89 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~-----------------------------------------------------------   89 (298)
                      ..+++++.     |+.|++|+                                                           
T Consensus       109 ~~~~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i  183 (355)
T d1nexb2         109 KYIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL  183 (355)
T ss_dssp             EEEEEEET-----TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             ceeeeecC-----CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee
Confidence            66666643     45555555                                                           


Q ss_pred             ----cCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555           90 ----VGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH  165 (298)
Q Consensus        90 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (298)
                          +.+++.+..+.++...+.++.|+|+++.+++++.|+.|++||+++       ...+..+..|...|.+++++  ++
T Consensus       184 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~h~~~v~~~~~~--~~  254 (355)
T d1nexb2         184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-------GELMYTLQGHTALVGLLRLS--DK  254 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCCCEEEEC--SS
T ss_pred             eeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc-------cccccccccccccccccccc--cc
Confidence                444444445556677788999999999999999999999999987       56778888999999999987  47


Q ss_pred             EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE-EeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555          166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS-WVGLDRQKNHGFLAVGMESGVIELWSISVNRTN  237 (298)
Q Consensus       166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  237 (298)
                      +|++++.||.|++||+++.....   .  .|...+.++. +++++     .++++| .|+.|++||+++++..
T Consensus       255 ~l~~~~~dg~i~iwd~~~~~~~~---~--~~~~~~~~~~~~~~~~-----~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         255 FLVSAAADGSIRGWDANDYSRKF---S--YHHTNLSAITTFYVSD-----NILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE---E--EECTTCCCCCEEEECS-----SEEEEE-ETTEEEEEETTTCCBC
T ss_pred             eeeeeecccccccccccccceec---c--cccCCceEEEEEcCCC-----CEEEEE-eCCEEEEEECCCCCEE
Confidence            99999999999999998776433   2  3445555554 45554     565555 5899999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=2e-20  Score=154.43  Aligned_cols=265  Identities=9%  Similarity=0.030  Sum_probs=173.1

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc----------eEEeccCCCceEEEEEcC
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE----------SHKLYGHGNELFSLCCDH   66 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~----------~~~~~~h~~~v~~~~~s~   66 (298)
                      ++.++.++..+++.+..+..|. .+..+.|+ |+++.++.+      .+|+.          +....+|.+.+.+++|+|
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS-PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGY-AVHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCS-SEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCEEEEEECCCCcEEEEEeCCC-CeeEEEEC-CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC
Confidence            4567889999999999999874 68899999 677776654      34431          122336777788889999


Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccE-----------EEEEEcCCCCEEEEEeC-CCeEEEEEecc
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV-----------TQIRFSHDDNLLLSVSR-DRQFSVFAIQR  134 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  134 (298)
                      ||++|++++.    .++.+.+||..+++.+..+..|...+           ..+.+++++..++.... .+.+.+++...
T Consensus       119 DG~~l~v~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~  194 (426)
T d1hzua2         119 EDRYTIAGAY----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  194 (426)
T ss_dssp             TTTEEEEEEE----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEeec----CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence            9999877753    48899999999988776665554443           44555555554444333 34444444433


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCccee-------------------------
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVK-------------------------  188 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~-------------------------  188 (298)
                      ..      ........+...+..+.|+|++++++++. .+..+.+++..+.+...                         
T Consensus       195 ~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         195 ID------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             SS------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             cc------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            21      11223335667788899999988777765 34556677666433211                         


Q ss_pred             --------------------------eeeecCCCCCceEEEEEeeccccCCccEEEE-------eecCCcEEEEEeeecc
Q 037555          189 --------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAV-------GMESGVIELWSISVNR  235 (298)
Q Consensus       189 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-------g~~dg~i~vwd~~~~~  235 (298)
                                                ....+.+|...+..++|+|++     .+|++       +..+++|+|||+.+++
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-----~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-----SHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-----SEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-----ceEEEeecCCCCcccCCEEEEEECCCCC
Confidence                                      112344566778899999998     67774       4567899999998874


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee----eCCCcEEEeEec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC----GADNTVRVFQVN  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~iw~~~  297 (298)
                      .....       ........+..|...|..++|+|||+      .+++++    +.++.|+|||.+
T Consensus       344 ~~~~~-------~~~~~~~~~~~~~~rv~~~~fSpDGk------~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         344 AKYQV-------LPIAEWADLGEGAKRVVQPEYNKRGD------EVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             SCCEE-------ECHHHHHCCCSSCCCEEEEEECSSSS------EEEEEECCCTTSCCEEEEEETT
T ss_pred             cCeEE-------eccchhcccCCCCccEEEEEECCCCC------EEEEEEecCCCCCCeEEEEECC
Confidence            32110       00011112344677899999999993      344543    468899999964

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=5.1e-18  Score=132.75  Aligned_cols=246  Identities=12%  Similarity=0.082  Sum_probs=177.8

Q ss_pred             ccccceeeeecCcccccccCCCCCceeeeccCCCccccc-cc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555            3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLA-WH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL   70 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~   70 (298)
                      +..+..++..+++.+.++... .....++++ |++..+. +.      .+|+     .+..+..+. .+..+.|++++..
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~g-~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~   87 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPVG-SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQ   87 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE
T ss_pred             CCEEEEEECCCCeEEEEEECC-CCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccc
Confidence            455778888999988888754 345678888 5555543 32      2342     355666555 4689999999998


Q ss_pred             EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555           71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGEIDYQLIARQE  149 (298)
Q Consensus        71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  149 (298)
                      +++++    ..++.+.+|+..+++....+.. .....++.|+|++..++ ++..++.+.+|+...       ......+.
T Consensus        88 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  155 (301)
T d1l0qa2          88 VYVTN----MASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-------KAVINTVS  155 (301)
T ss_dssp             EEEEE----TTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------TEEEEEEE
T ss_pred             ccccc----cccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccc-------cceeeecc
Confidence            77765    3578999999999888877774 45678899999998765 555688899999887       44455544


Q ss_pred             ccCCceEEEEEccCCCEEEEeeCC-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCc
Q 037555          150 AHKRIIWSCSWNPFGHEFATGSRD-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGV  225 (298)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~  225 (298)
                      . ...+..+.++|++..++++..+ +.+.+|+....+...   ... ....+..+++++++     ..++.+.   .++.
T Consensus       156 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~g-----~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         156 V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID---TVK-VEAAPSGIAVNPEG-----TKAYVTNVDKYFNT  225 (301)
T ss_dssp             C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSEEEEEEECTTS-----SEEEEEEECSSCCE
T ss_pred             c-CCCceEEEeeccccceeeecccccccccccccceeeee---ccc-ccCCcceeeccccc-----cccccccccceeee
Confidence            3 4557889999999888887765 567777777665544   222 34567889999988     4554443   3468


Q ss_pred             EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE-EEeeeCCCcEEEeEec
Q 037555          226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ-LASCGADNTVRVFQVN  297 (298)
Q Consensus       226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iw~~~  297 (298)
                      |++||..+.             +....+.    +...+.+++|+||+       ++ +++++.|+.|++||++
T Consensus       226 v~v~D~~t~-------------~~~~~~~----~~~~~~~va~spdg-------~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         226 VSMIDTGTN-------------KITARIP----VGPDPAGIAVTPDG-------KKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEEETTTT-------------EEEEEEE----CCSSEEEEEECTTS-------SEEEEEETTTTEEEEEETT
T ss_pred             eeeeecCCC-------------eEEEEEc----CCCCEEEEEEeCCC-------CEEEEEECCCCeEEEEECC
Confidence            999999876             4444443    34567899999999       55 5788889999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.7e-19  Score=147.62  Aligned_cols=189  Identities=14%  Similarity=0.023  Sum_probs=138.1

Q ss_pred             CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ..+++|.|||..+++.+..+..+ ..+..++|+|||+++++++.|+.+++||+.+.....  ...+.....|.+.+.+..
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i~~~~~~~~~~~s~~  115 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKIGSEARSIETSKM  115 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEECCSEEEEEEECCS
T ss_pred             cCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--EEEEecCCCCCCeEEecc
Confidence            46999999999999999999866 468999999999999999999999999998754211  112233345666677778


Q ss_pred             EccCCCEE-EEeeCCCeEEEEEccCCcceeeeeec--------CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555          160 WNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILAL--------PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS  230 (298)
Q Consensus       160 ~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd  230 (298)
                      |+|||++| ++++.++.|++||..+++....+...        .........+.++|++.    .++++...++.|.+|+
T Consensus       116 ~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~----~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP----EFIVNVKETGKILLVD  191 (432)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS----EEEEEETTTTEEEEEE
T ss_pred             cCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC----EEEEEEccCCeEEEEE
Confidence            89999976 67788999999999998876533210        01334566788898874    5566777889999999


Q ss_pred             eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555          231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-ADNTVRVFQVN  297 (298)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~~  297 (298)
                      ..+.+.           ..+..+    .+...+..++|+|++       +++++++ .++.+.++|.+
T Consensus       192 ~~~~~~-----------~~~~~i----~~g~~~~~~~~spdg-------~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         192 YTDLNN-----------LKTTEI----SAERFLHDGGLDGSH-------RYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             TTCSSE-----------EEEEEE----ECCSSEEEEEECTTS-------CEEEEEEGGGTEEEEEETT
T ss_pred             ccCCCc-----------ceEEEE----cccCccccceECCCC-------CEEEEeccccceEEEeecc
Confidence            876521           112222    245678899999999       6655555 55677777753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=5.8e-19  Score=140.87  Aligned_cols=113  Identities=7%  Similarity=0.054  Sum_probs=86.1

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCc
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~  139 (298)
                      ++|++++++|++++.     ++.|.+||+.+++.+.++. .+...+.+++|+|||++++ ++..++.|.+||+.+     
T Consensus         2 ~a~~~~~~~l~~~~~-----~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-----   71 (346)
T d1jmxb_           2 PALKAGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-----   71 (346)
T ss_dssp             CCCCTTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-----
T ss_pred             ccCCCCCcEEEEEcC-----CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-----
Confidence            478999999999954     8999999999999998876 3566788999999999874 556789999999987     


Q ss_pred             cceeeeEEeecc------CCceEEEEEccCCCEEEEee------------CCCeEEEEEccCCcc
Q 037555          140 IDYQLIARQEAH------KRIIWSCSWNPFGHEFATGS------------RDKTVKIWAVENKSS  186 (298)
Q Consensus       140 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~  186 (298)
                        .+.+..+...      ...+..++|+|+++++++++            .++.+.+||..+++.
T Consensus        72 --~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          72 --CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             --TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             --CeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence              3334333321      12356788999998887764            366788888776443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=6e-18  Score=134.36  Aligned_cols=205  Identities=12%  Similarity=0.085  Sum_probs=142.7

Q ss_pred             ceEEecc--CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-----ccEEEEEEcCCCCEEEE
Q 037555           48 ESHKLYG--HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-----LTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        48 ~~~~~~~--h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~  120 (298)
                      .+..+..  +...+.+++|+|||+++++++    ..++.|.+||+.+++.+..+..+.     ..+..++|+|+++++++
T Consensus        23 ~~~~i~~~~~~~~~~~i~~spDg~~l~v~~----~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~   98 (337)
T d1pbyb_          23 VDKVITIADAGPTPMVPMVAPGGRIAYATV----NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEE----TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             EEEEEECCCCCCCccEEEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEE
Confidence            3444543  445688999999999886543    358999999999999887765443     34557899999999888


Q ss_pred             EeC------------CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee
Q 037555          121 VSR------------DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       121 ~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      +..            +..+.+||...       ......+. +...+..++|+|+++++++++.+  +.+||..+.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~  168 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAET-------LSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVE  168 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTT-------TEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEE
T ss_pred             eecCCcceeeeccccccceeeccccC-------CeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEE
Confidence            763            56788888876       44455544 34567889999999999988754  6778877654332


Q ss_pred             eeee---------------------------------------------------------------cCCCCCceEEEEE
Q 037555          189 QILA---------------------------------------------------------------LPPFNSSVTALSW  205 (298)
Q Consensus       189 ~~~~---------------------------------------------------------------~~~~~~~v~~~~~  205 (298)
                      .+..                                                               +..+...+..+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T d1pbyb_         169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEe
Confidence            1100                                                               0001112223333


Q ss_pred             eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      +|++     .+++.+  ++.|++||+.+.             +.+..+.    +...+.+++|+||+       .+|+++
T Consensus       249 ~~~~-----~~~~~~--~~~i~v~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dG-------~~l~v~  297 (337)
T d1pbyb_         249 NPAK-----TRAFGA--YNVLESFDLEKN-------------ASIKRVP----LPHSYYSVNVSTDG-------STVWLG  297 (337)
T ss_dssp             CTTS-----SEEEEE--ESEEEEEETTTT-------------EEEEEEE----CSSCCCEEEECTTS-------CEEEEE
T ss_pred             cccc-----eEEEEc--cccEEEEECCCC-------------cEEEEEc----CCCCEEEEEECCCC-------CEEEEE
Confidence            3333     455443  578999999877             5555543    45678999999999       899999


Q ss_pred             eCCCcEEEeEec
Q 037555          286 GADNTVRVFQVN  297 (298)
Q Consensus       286 ~~d~~i~iw~~~  297 (298)
                      +.|+.|++||+.
T Consensus       298 ~~~~~i~v~D~~  309 (337)
T d1pbyb_         298 GALGDLAAYDAE  309 (337)
T ss_dssp             SBSSEEEEEETT
T ss_pred             eCCCcEEEEECC
Confidence            999999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=2.1e-18  Score=142.19  Aligned_cols=185  Identities=15%  Similarity=0.075  Sum_probs=123.8

Q ss_pred             CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      .+|+.|+|||+.+++.+.++..|. .+..++|+|||+++++++.|+.+++||+.+.+...  ...+.....|...+.+++
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~~~~~~~~~s~~  115 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKF  115 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEEEEEEECCS
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCCCCCcceEEeee
Confidence            469999999999999999998764 58999999999999999999999999998754211  111222335666777888


Q ss_pred             EccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCce-----------EEEEEeeccccCCccEEEEeecCCcEE
Q 037555          160 WNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSV-----------TALSWVGLDRQKNHGFLAVGMESGVIE  227 (298)
Q Consensus       160 ~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~l~~g~~dg~i~  227 (298)
                      |+|+|++++++ ..++.+++||..+......   +..+...+           ..+..++++.    .++.+....+.+.
T Consensus       116 ~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~d~~----~~~~~~~~~~~i~  188 (426)
T d1hzua2         116 KGYEDRYTIAGAYWPPQFAIMDGETLEPKQI---VSTRGMTVDTQTYHPEPRVAAIIASHEHP----EFIVNVKETGKVL  188 (426)
T ss_dssp             TTCTTTEEEEEEEESSEEEEEETTTCCEEEE---EECCEECSSSCCEESCCCEEEEEECSSSS----EEEEEETTTTEEE
T ss_pred             ecCCCCEEEEeecCCCeEEEEcCCccceeEE---eeccCCCccceeecCCCceeEEEECCCCC----EEEEecCCCCeEE
Confidence            89999987555 5789999999998877652   22233333           3444444442    2222233334444


Q ss_pred             EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE-eeeCCCcEEEeEe
Q 037555          228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA-SCGADNTVRVFQV  296 (298)
Q Consensus       228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iw~~  296 (298)
                      +++......           .....    ..+...+..+.|+|++       ++++ +...+..+.++++
T Consensus       189 ~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~g-------~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         189 LVNYKDIDN-----------LTVTS----IGAAPFLADGGWDSSH-------RYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             EEECSSSSS-----------CEEEE----EECCSSEEEEEECTTS-------CEEEEEETTCSEEEEEET
T ss_pred             EEEeccccc-----------eeeEE----eccCCccEeeeECCCC-------cEEEeeeecccceeeeec
Confidence            444433211           11111    2367788999999998       5554 4456667777765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=4.1e-17  Score=134.44  Aligned_cols=169  Identities=6%  Similarity=-0.020  Sum_probs=123.9

Q ss_pred             CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-----eccccccccEEEEEEcCCCCEE-EE
Q 037555           47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQSHSLTVTQIRFSHDDNLL-LS  120 (298)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l-~~  120 (298)
                      ..+..+..| ..+..++|||||++|++++.     |+.|++||+.+++..     .....|...+.+..|+|||++| ++
T Consensus        53 ~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~-----dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          53 EIKTVLDTG-YAVHISRLSASGRYLFVIGR-----DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             CEEEEEECS-SCEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             cEEEEEeCC-CCeeEEEECCCCCEEEEEcC-----CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            467777766 46999999999999999954     899999999876532     2234566777788889999976 67


Q ss_pred             EeCCCeEEEEEeccCCCCccceeeeEEeec-----------cCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCccee
Q 037555          121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEA-----------HKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVK  188 (298)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  188 (298)
                      ++.++.|++||..+.       .++..+..           +......+.++|++..+ ++...++.|.+||..+.+...
T Consensus       127 ~~~~~~v~i~d~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         127 AYWPPQYVIMDGETL-------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             EEETTEEEEEETTTC-------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             cCCCCeEEEEeCccc-------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            888999999999873       33333322           34556778899998776 455678999999998776543


Q ss_pred             eeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecc
Q 037555          189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNR  235 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~  235 (298)
                      .. .+. ....+..++|+|++     .++++++ .+..+.++|..+.+
T Consensus       200 ~~-~i~-~g~~~~~~~~spdg-----~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         200 TT-EIS-AERFLHDGGLDGSH-----RYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EE-EEE-CCSSEEEEEECTTS-----CEEEEEEGGGTEEEEEETTTTE
T ss_pred             EE-EEc-ccCccccceECCCC-----CEEEEeccccceEEEeecccce
Confidence            22 332 45668899999999     5555555 55678888876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.6e-17  Score=129.15  Aligned_cols=124  Identities=7%  Similarity=0.040  Sum_probs=92.1

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc---cccccEEEEEEcCCCCEEEEEeC-CCeEE
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ---SHSLTVTQIRFSHDDNLLLSVSR-DRQFS  128 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  128 (298)
                      ..|.+.|..++|+|||++|++++    ..++.|++|++........+.   .+...+..++|+|||++|++++. ++.+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~----~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~  108 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGV----RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS  108 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEE----TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEE----CCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCcee
Confidence            46889999999999999997765    358999999997654332222   23445678999999999988875 77899


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCc
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKS  185 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~  185 (298)
                      +|+.....     .........+...+.++.++|++++++.++. +..|.+|+.....
T Consensus       109 ~~~~~~~~-----~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_         109 VTRLEDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             EEEEETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             eecccccc-----ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            99887632     2223334456677889999999998887774 5678899886643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=3.2e-16  Score=126.43  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------  122 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------  122 (298)
                      ..+..++.+++++|+|+.+++.........+.|.+||..+++.+.++..+..+  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            45788999999999999988764322233568999999999999888765543  799999999998875          


Q ss_pred             CCCeEEEEEeccC
Q 037555          123 RDRQFSVFAIQRT  135 (298)
Q Consensus       123 ~dg~i~iwd~~~~  135 (298)
                      .++.|.+||..+.
T Consensus        95 ~~~~v~v~D~~t~  107 (373)
T d2madh_          95 RTDYVEVFDPVTF  107 (373)
T ss_pred             cceEEEEEECCCC
Confidence            4578999999874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=2.8e-15  Score=116.90  Aligned_cols=202  Identities=13%  Similarity=0.119  Sum_probs=144.5

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQF  127 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i  127 (298)
                      ++++. ....+..++|+|+|++|++++    ..++.|++||+.+++.+..+..+. .+..+.|++++..++ ++..++.+
T Consensus        25 ~~~i~-~g~~p~~va~spdG~~l~v~~----~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   98 (301)
T d1l0qa2          25 TATIP-VGSNPMGAVISPDGTKVYVAN----AHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTL   98 (301)
T ss_dssp             EEEEE-CSSSEEEEEECTTSSEEEEEE----GGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEE-CCCCceEEEEeCCCCEEEEEE----CCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccccccccee
Confidence            44443 335578999999999886554    348899999999999998887665 468899999998655 45567899


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV  206 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~  206 (298)
                      .+|+...       ......+.. ......+.|+|+++.++. +..++.+.+|+..+.....   .+. ....+..++++
T Consensus        99 ~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~  166 (301)
T d1l0qa2          99 SVIDTTS-------NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVS-VGRSPKGIAVT  166 (301)
T ss_dssp             EEEETTT-------TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CCSSEEEEEEC
T ss_pred             eeccccc-------ceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceee---ecc-cCCCceEEEee
Confidence            9999886       444555544 456788999999987754 4568889999999887766   333 34557889999


Q ss_pred             eccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555          207 GLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC  285 (298)
Q Consensus       207 ~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  285 (298)
                      |++     ..+++++. ++.+.+|+....             .....+.    ....+..++|++++       ..++.+
T Consensus       167 ~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----~~~~~~~~~~~~~g-------~~~~v~  217 (301)
T d1l0qa2         167 PDG-----TKVYVANFDSMSISVIDTVTN-------------SVIDTVK----VEAAPSGIAVNPEG-------TKAYVT  217 (301)
T ss_dssp             TTS-----SEEEEEETTTTEEEEEETTTT-------------EEEEEEE----CSSEEEEEEECTTS-------SEEEEE
T ss_pred             ccc-----cceeeecccccccccccccce-------------eeeeccc----ccCCcceeeccccc-------cccccc
Confidence            988     56666655 456667766543             3333322    34567889999998       555443


Q ss_pred             e---CCCcEEEeEec
Q 037555          286 G---ADNTVRVFQVN  297 (298)
Q Consensus       286 ~---~d~~i~iw~~~  297 (298)
                      +   .++.|++||+.
T Consensus       218 ~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EECSSCCEEEEEETT
T ss_pred             cccceeeeeeeeecC
Confidence            3   34789999964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.4e-15  Score=116.20  Aligned_cols=190  Identities=14%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             CCceEEEEEEcCCceeeecc--ccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555           80 TAAAEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW  156 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  156 (298)
                      .++++|++|++++...+..+  ..|...+..++|+|||++|++++ .|+.|++|++......   .... ....+...+.
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~---~~~~-~~~~~~~~p~   86 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA---LTFA-AESALPGSLT   86 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---EEEE-EEEECSSCCS
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc---EEEe-eecccCCCce
Confidence            45899999999754333322  24788899999999999886555 5899999999764321   1122 2223445577


Q ss_pred             EEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeec
Q 037555          157 SCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVN  234 (298)
Q Consensus       157 ~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~  234 (298)
                      .++|+|++++|++++. ++.|.+|+.......... ....+...+.++.++|++     .+++.++ .+..|.+|+....
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~v~~s~d~-----~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-DVVEGLDGCHSANISPDN-----RTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE-EEECCCTTBCCCEECTTS-----SEEEEEEGGGTEEEEEEECTT
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecc-cccCCCccceEEEeeecc-----eeeeccccccceeeEEEeccC
Confidence            8999999999998875 678999998876654433 233356678899999998     5555555 5667999998754


Q ss_pred             ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEe
Q 037555          235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQV  296 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~  296 (298)
                      .....        ......  ..........++|++++       ..+ .+....+...+|++
T Consensus       161 ~~~~~--------~~~~~~--~~~~g~~p~~i~~~~~~-------~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         161 GHLVA--------QDPAEV--TTVEGAGPRHMVFHPNE-------QYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             SCEEE--------EEEEEE--ECSTTCCEEEEEECTTS-------SEEEEEETTTTEEEEEES
T ss_pred             Cccee--------eeceee--eeecCCCccEEEEeccc-------eeEEeeccccCceEEEee
Confidence            22110        111111  11234556789999998       444 44445666777664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3e-15  Score=119.68  Aligned_cols=121  Identities=16%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEE
Q 037555           59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFS  128 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  128 (298)
                      +.-.+.+|+++.+++........+..|.+||..+++.+.++..+..+  .++|+|||++|++.+          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33445689999988764332234678999999999998888755444  699999999887643          478999


Q ss_pred             EEEeccCCCCccceeeeEEeeccC-------CceEEEEEccCCCEEEEee--CCCeEEEEEccCCccee
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHK-------RIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVK  188 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~  188 (298)
                      +||..+.       +....+..+.       .....++|+|+++++++++  .+..+.+||..+++...
T Consensus        82 v~D~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          82 VFDPVTL-------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             EECTTTC-------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EEECCCC-------CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence            9999873       3344333221       2235678999999887765  45779999998876554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=7.3e-15  Score=116.22  Aligned_cols=143  Identities=10%  Similarity=0.122  Sum_probs=108.7

Q ss_pred             CEEEeEeccCCCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeee
Q 037555           69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLI  145 (298)
Q Consensus        69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (298)
                      .+|++++     .|++|+|||+.+++.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+       .+.+
T Consensus         2 ~~~vt~~-----~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-------~~~~   69 (337)
T d1pbyb_           2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-------GETL   69 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-------CCEE
T ss_pred             eEEEEEc-----CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-------CcEE
Confidence            4788885     489999999999999888754  34567899999999987 4567799999999987       4445


Q ss_pred             EEeeccC-----CceEEEEEccCCCEEEEee------------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          146 ARQEAHK-----RIIWSCSWNPFGHEFATGS------------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       146 ~~~~~~~-----~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      ..+..+.     ..+..++|+|++++++++.            .+..+.+||..+.+...   .+. ....+..++|+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~-~~~~~~~~~~s~d  145 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK---AFE-APRQITMLAWARD  145 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE---EEE-CCSSCCCEEECTT
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE---ecc-ccCCceEEEEcCC
Confidence            5444332     2345789999999988776            35788999999887766   333 3456788999999


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeec
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +     .++++++.  .+.+||..+.
T Consensus       146 g-----~~l~~~~~--~~~~~d~~~~  164 (337)
T d1pbyb_         146 G-----SKLYGLGR--DLHVMDPEAG  164 (337)
T ss_dssp             S-----SCEEEESS--SEEEEETTTT
T ss_pred             C-----CEEEEEcC--CcceeeeecC
Confidence            8     67877764  4677887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1e-14  Score=115.79  Aligned_cols=173  Identities=6%  Similarity=0.006  Sum_probs=119.9

Q ss_pred             ceEEec-cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCEEEE
Q 037555           48 ESHKLY-GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        48 ~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~  120 (298)
                      .+.++. .|...+.+++|+|||+++++++    ..++.|.+||+.+++.+..+..      +...+..++|+|||+++++
T Consensus        30 ~~~t~~~~~~~~p~~l~~spDG~~l~v~~----~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v  105 (346)
T d1jmxb_          30 VYKSCVMPDKFGPGTAMMAPDNRTAYVLN----NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA  105 (346)
T ss_dssp             EEEEEECSSCCSSCEEEECTTSSEEEEEE----TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             EEEEEEcCCCCCcceEEECCCCCEEEEEE----CCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEE
Confidence            355554 4566788999999999886654    3589999999999988766542      2234567899999998877


Q ss_pred             Ee------------CCCeEEEEEeccCCCCcc----------------------------------c-------------
Q 037555          121 VS------------RDRQFSVFAIQRTGTGEI----------------------------------D-------------  141 (298)
Q Consensus       121 ~~------------~dg~i~iwd~~~~~~~~~----------------------------------~-------------  141 (298)
                      ++            .++.+.+|+.........                                  .             
T Consensus       106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (346)
T d1jmxb_         106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN  185 (346)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCC
T ss_pred             EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCc
Confidence            64            356667776654221000                                  0             


Q ss_pred             -------------------------------------------------------eeeeEEeeccCCceEEEEEccCCCE
Q 037555          142 -------------------------------------------------------YQLIARQEAHKRIIWSCSWNPFGHE  166 (298)
Q Consensus       142 -------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~  166 (298)
                                                                             .........+...+..+.+++++.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (346)
T d1jmxb_         186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN  265 (346)
T ss_dssp             CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred             cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE
Confidence                                                                   0000111234445566677777766


Q ss_pred             EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      ++... ++.|.+||..+++.+..   +. +...+.+++|+|++     .+|++++.|+.|++||..+.
T Consensus       266 ~~~~~-~~~v~v~d~~~~~~~~~---~~-~~~~~~~va~s~DG-----~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         266 QIYGV-LNRLAKYDLKQRKLIKA---AN-LDHTYYCVAFDKKG-----DKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EEEEE-ESEEEEEETTTTEEEEE---EE-CSSCCCEEEECSSS-----SCEEEESBSSEEEEEETTTT
T ss_pred             EEEec-CCeEEEEECCCCcEEEE---Ec-CCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECccC
Confidence            66655 46799999999887763   32 34568999999999     78999999999999999887

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=4.7e-13  Score=107.58  Aligned_cols=125  Identities=13%  Similarity=-0.006  Sum_probs=86.6

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CC
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RD  124 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d  124 (298)
                      +.++...++..++++.....-.........|.+||..+++.+..+..+...  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            344555556677887543321111133567888999999998887766554  589999999888764          46


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccC-------CceEEEEEccCCCEEEEee-CCCeEEEEEccCCccee
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHK-------RIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVK  188 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~  188 (298)
                      +.|.+||..+       .+.+..+..+.       .....++|+||+++++++. .++.+.+||+.+.+...
T Consensus        96 ~~v~v~D~~t-------~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          96 DYVEVFDPVT-------FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEEEECTTT-------CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             CeEEEEECCC-------CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            7899999987       34444443222       1234689999999998876 57999999999876554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.39  E-value=1.6e-10  Score=92.38  Aligned_cols=232  Identities=9%  Similarity=-0.068  Sum_probs=140.4

Q ss_pred             ccceeeeecCcccccccCCCCCceeeeccC------CCccccccc--------CCCC-ceEEeccCCCceEEEEEcCCCC
Q 037555            5 TRETVERHGNDGLDTLESVPDAVPAVFTEP------PIEDQLAWH--------TLWP-ESHKLYGHGNELFSLCCDHQGK   69 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~--------~~~~-~~~~~~~h~~~v~~~~~s~~~~   69 (298)
                      .++.++..+++.+..+..+..........|      +.++.+...        .+|+ .......+...+.++.++|+++
T Consensus        98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  177 (373)
T d2madh_          98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAP  177 (373)
T ss_pred             EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCC
Confidence            456777888888887777666554332221      222221111        1111 1122334556678899999998


Q ss_pred             EEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555           70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ  143 (298)
Q Consensus        70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (298)
                      .++.+.    ..|+.+.+|+...++.......      .......+.+.+++ .++..+.++.+.+|+......     .
T Consensus       178 ~~~v~~----~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-----~  247 (373)
T d2madh_         178 STFYLL----CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGA-----T  247 (373)
T ss_pred             cEEEEE----cCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeE-----E
Confidence            665443    3589999999988776654432      22223445566555 445666788999998776431     1


Q ss_pred             eeEEeec----------cCCceEEEEEccCCCEE----------EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          144 LIARQEA----------HKRIIWSCSWNPFGHEF----------ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       144 ~~~~~~~----------~~~~v~~~~~~~~~~~l----------~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      .......          .......+++++++..+          ++...++.+.+||..+++.+.   .+. +...+..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~---~~~-~~~~~~~~  323 (373)
T d2madh_         248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS---QIS-LGHDVDAI  323 (373)
T ss_pred             EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE---Eec-CCCCeeEE
Confidence            1111111          11223345555555443          445567789999999988776   443 56778999


Q ss_pred             EEeeccccCCcc-EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          204 SWVGLDRQKNHG-FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       204 ~~~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                      +|+|++.    . ++++++.|+.|++||+.++             +.+..+.   .+....+.|++.+
T Consensus       324 a~spDG~----~~l~vt~~~d~~v~v~D~~tg-------------~~~~~~~---~~g~~P~~l~~~~  371 (373)
T d2madh_         324 SVAQDGG----PDLYALSAGTEVLHIYDAGAG-------------DQDQSTV---ELGSGPQVLSVMN  371 (373)
T ss_pred             EECCCCC----EEEEEEeCCCCeEEEEECCCC-------------CEEEEEC---CCCCCCcEEEEec
Confidence            9999983    3 4567889999999999988             5555543   3555555555543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=3.1e-12  Score=101.83  Aligned_cols=210  Identities=6%  Similarity=0.031  Sum_probs=132.4

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCccccccc----------------CCCC-----ceEEeccCC-------C
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH----------------TLWP-----ESHKLYGHG-------N   57 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~-----~~~~~~~h~-------~   57 (298)
                      +..++..+|+.+..+..+.  .+.++++ |+++.+...                .+|+     ....+..+.       .
T Consensus        30 v~v~D~~tg~~~~~~~~g~--~~~~a~S-pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~  106 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGF--LPNPVVA-DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT  106 (355)
T ss_dssp             EEEEETTTTEEEEEEEECS--SCEEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             EEEEECCCCcEEEEEECCC--CCceEEc-CCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence            4456677888888776543  3467788 555554321                2343     223332221       2


Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc-------c-------------------------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL-------T-------------------------  105 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-------~-------------------------  105 (298)
                      ....++|+|+++.++.+..   ..+..+.+|+..+++.+..+..+..       .                         
T Consensus       107 ~~~~~~~s~dg~~~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~  183 (355)
T d2bbkh_         107 YPWMTSLTPDGKTLLFYQF---SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  183 (355)
T ss_dssp             CGGGEEECTTSSEEEEEEC---SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CCceEEEecCCCeeEEecC---CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEE
Confidence            2356799999999988765   4577899999988776554432111       0                         


Q ss_pred             -------------EEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc----------CCceEEEEEcc
Q 037555          106 -------------VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH----------KRIIWSCSWNP  162 (298)
Q Consensus       106 -------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~  162 (298)
                                   +....+.+++..++.++.++.+.+|++.....     ..+.....+          ......+++++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  258 (355)
T d2bbkh_         184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-----KFLPAVEALTEAERADGWRPGGWQQVAYHR  258 (355)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-----EECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             EecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-----EEEeccCCcccceEeeeeeccceEEEEEeC
Confidence                         11223444455667777788888888876431     111111111          12234578899


Q ss_pred             CCCEEEEeeCC----------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc-EEEEeecCCcEEEEEe
Q 037555          163 FGHEFATGSRD----------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG-FLAVGMESGVIELWSI  231 (298)
Q Consensus       163 ~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~g~~dg~i~vwd~  231 (298)
                      ++..++....+          ..|.+||..+++.+.   .+. ....+.+++|+|++.    . +++++..|+.|++||+
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~---~~~-~~~~~~~~a~spDG~----~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA---KFE-MGHEIDSINVSQDEK----PLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---EEE-EEEEECEEEECCSSS----CEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEE---Eec-CCCCEEEEEEcCCCC----eEEEEEECCCCEEEEEEC
Confidence            98887766533          469999999988776   333 345688999999983    3 4566778999999999


Q ss_pred             eec
Q 037555          232 SVN  234 (298)
Q Consensus       232 ~~~  234 (298)
                      .++
T Consensus       331 ~tg  333 (355)
T d2bbkh_         331 ESG  333 (355)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            887

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=8.9e-12  Score=103.31  Aligned_cols=152  Identities=15%  Similarity=0.190  Sum_probs=111.6

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-----ccccccccEEEEEEcCCCCEEEEEeC---------CCe
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-----RLQSHSLTVTQIRFSHDDNLLLSVSR---------DRQ  126 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~  126 (298)
                      .+.|.+++.++...       ++.|.+||+.+++...     .+..|...|.++.|+||+++|+.++.         ++.
T Consensus        21 ~~~W~~d~~~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEECSSSEEEEES-------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CCEeCCCCEEEEEc-------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            57799999877644       6789999999987654     34556678999999999999988753         567


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC------------
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP------------  194 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------------  194 (298)
                      +.+||+...        ....+..+...+..+.|+|+|+.+|... ++.+.+|+..+++.........            
T Consensus        94 ~~l~d~~~~--------~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~  164 (470)
T d2bgra1          94 YDIYDLNKR--------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV  164 (470)
T ss_dssp             EEEEETTTT--------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             EEEEECCCC--------cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCccccccccee
Confidence            889999863        2455677888899999999999999865 6789999998877654211000            


Q ss_pred             ---CCCCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeee
Q 037555          195 ---PFNSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISV  233 (298)
Q Consensus       195 ---~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~  233 (298)
                         ...+....+.|+|++     ..|+....| ..+..|.+..
T Consensus       165 ~~~~~~~~~~~~~wSPDG-----k~ia~~~~d~~~v~~~~~~~  202 (470)
T d2bgra1         165 YEEEVFSAYSALWWSPNG-----TFLAYAQFNDTEVPLIEYSF  202 (470)
T ss_dssp             HHHHTSSSSBCEEECTTS-----SEEEEEEEECTTCCEEEEEE
T ss_pred             eeeeecCCccccEECCCC-----CccceeEecCCcCceEEEEe
Confidence               011234568899999     677776654 4477776653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=3.1e-10  Score=93.87  Aligned_cols=113  Identities=8%  Similarity=0.003  Sum_probs=80.6

Q ss_pred             ccceeeeecCcccc-----cccCCCCCceeeeccCCCccccccc----CCC-----------C----ceEEeccCCCceE
Q 037555            5 TRETVERHGNDGLD-----TLESVPDAVPAVFTEPPIEDQLAWH----TLW-----------P----ESHKLYGHGNELF   60 (298)
Q Consensus         5 ~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~----~~~-----------~----~~~~~~~h~~~v~   60 (298)
                      .+..++..+|+...     .+..|...|..+.|+ |+++.++..    ++|           +    ....+..|...+.
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~  115 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ  115 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccc
Confidence            35567777887654     445566788999999 666666543    222           2    3555678889999


Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc------------------cccEEEEEEcCCCCEEEEEe
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH------------------SLTVTQIRFSHDDNLLLSVS  122 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~  122 (298)
                      .+.|||||+.+|...      ++.+++|+..+++..+....+                  .+....+.|+|||+.|+...
T Consensus       116 ~~~~SPDG~~ia~~~------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         116 WVTWSPVGHKLAYVW------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             EEEECSSTTCEEEEE------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ccccccCcceeeEee------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            999999999999874      678999999888765443211                  12245678999999998876


Q ss_pred             CC
Q 037555          123 RD  124 (298)
Q Consensus       123 ~d  124 (298)
                      .|
T Consensus       190 ~d  191 (470)
T d2bgra1         190 FN  191 (470)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.24  E-value=4.9e-10  Score=90.24  Aligned_cols=212  Identities=9%  Similarity=-0.009  Sum_probs=132.5

Q ss_pred             cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCE--EEEEeCCC-----
Q 037555           54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNL--LLSVSRDR-----  125 (298)
Q Consensus        54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg-----  125 (298)
                      .|.-......++|||++|++...    .+.+|.++|+.+++....+. .+...+..++|+|+++.  ++..+.+.     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~----~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDK----ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPN  144 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEET----TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSC
T ss_pred             ccCCCcceecccCCCCEEEEEcC----CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccC
Confidence            34455666677899999988764    57899999999998877654 35678899999999984  44444332     


Q ss_pred             ------------eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC--------------------
Q 037555          126 ------------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--------------------  173 (298)
Q Consensus       126 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------  173 (298)
                                  .+..+|..+       .....++.. ......+.|+|+++++++.+.+                    
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t-------~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v  216 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAET-------MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV  216 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTT-------CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE
T ss_pred             cccccccccccceEEeecCcc-------ceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe
Confidence                        123345443       233333332 3456789999999988877643                    


Q ss_pred             ---------------------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555          174 ---------------------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS  232 (298)
Q Consensus       174 ---------------------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~  232 (298)
                                           +.+.+++....+...   .++. ......+.++|++.    .+++++..+++|.|||+.
T Consensus       217 ~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~---~IPv-gksPhGv~vSPDGk----yl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         217 FNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR---YIPV-PKNPHGLNTSPDGK----YFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE---EECC-BSSCCCEEECTTSC----EEEEECTTSSBEEEEEGG
T ss_pred             CCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE---EEeC-CCCccCceECCCCC----EEEEeCCcCCcEEEEEee
Confidence                                 233333333333333   3333 23357899999993    345667789999999997


Q ss_pred             ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      +......  .......++...   ....-.....+|.+++       +.+.+...|..|..|++.
T Consensus       289 k~~~~~~--~~~~~~~~~~~~---~~~glgplh~~fd~~g-------~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         289 KLDDLFE--DKIELRDTIVAE---PELGLGPLHTTFDGRG-------NAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             GHHHHTT--TSSCGGGGEEEC---CBCCSCEEEEEECSSS-------EEEEEETTTTEEEEEEHH
T ss_pred             hhhhHhh--ccCCcceEEEee---cccccCcccceecCCc-------eEEEcccccceEEEeccc
Confidence            6432111  000000111110   0112234556799988       888999999999999863

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=5.6e-10  Score=89.24  Aligned_cols=86  Identities=9%  Similarity=0.049  Sum_probs=61.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccccc-------cEEEEEEcCCC
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSHSL-------TVTQIRFSHDD  115 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~  115 (298)
                      .+.++.++..+  .++|+|+|+.|++.+..     .+..++.|.+||..+++.+..+..+..       ....++|+|||
T Consensus        58 ~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence            34555555544  58999999998876431     113478899999999988776643321       23468999999


Q ss_pred             CEEEEEe-CCCeEEEEEeccC
Q 037555          116 NLLLSVS-RDRQFSVFAIQRT  135 (298)
Q Consensus       116 ~~l~~~~-~dg~i~iwd~~~~  135 (298)
                      ++++++. .++.+.+||+...
T Consensus       136 k~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEeCCCCeEEEEECCCC
Confidence            9888776 5799999997653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=5.4e-09  Score=81.09  Aligned_cols=200  Identities=10%  Similarity=0.023  Sum_probs=131.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .+..++++|+|+++++.     ..+++|..++.. ++ ...+......+.+++|+++|+++++...++.+..++......
T Consensus        29 ~~e~iAv~pdG~l~vt~-----~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTN-----HEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEE-----TTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEe-----CCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            47899999999999887     458889888865 33 233444667899999999999999988888888888765332


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-------cCCCCCceEEEEEeeccc
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-------LPPFNSSVTALSWVGLDR  210 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~  210 (298)
                      .   ...+.. .........+.+.++++++++-+.++.+..+|............       ..........+.+...  
T Consensus       102 ~---~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--  175 (302)
T d2p4oa1         102 T---VETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--  175 (302)
T ss_dssp             C---EEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--
T ss_pred             c---eeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--
Confidence            1   111111 22345678999999999888888888888888876543211100       1111223455655542  


Q ss_pred             cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555          211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT  290 (298)
Q Consensus       211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  290 (298)
                          .++++.+..+.|+.++........          ....+.    .......|++.+++       +++++...++.
T Consensus       176 ----~l~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~----~~~~pdgia~d~dG-------~l~va~~~~~~  230 (302)
T d2p4oa1         176 ----FLYVSNTEKMLLLRIPVDSTDKPG----------EPEIFV----EQTNIDDFAFDVEG-------NLYGATHIYNS  230 (302)
T ss_dssp             ----EEEEEETTTTEEEEEEBCTTSCBC----------CCEEEE----ESCCCSSEEEBTTC-------CEEEECBTTCC
T ss_pred             ----ceeeecCCCCeEEecccccccccc----------cccccc----CCCCCcceEECCCC-------CEEEEEcCCCc
Confidence                466666778888888776542111          111111    22345678999998       77777777888


Q ss_pred             EEEeE
Q 037555          291 VRVFQ  295 (298)
Q Consensus       291 i~iw~  295 (298)
                      |..++
T Consensus       231 V~~i~  235 (302)
T d2p4oa1         231 VVRIA  235 (302)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=8.9e-08  Score=72.49  Aligned_cols=208  Identities=8%  Similarity=0.026  Sum_probs=122.0

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeE
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQF  127 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i  127 (298)
                      .+.+..+...+...+|||||+.||.....  .....+.+.+...+... .+..+........|+|+|+.++.... ++..
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEee--ccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCcc
Confidence            45555667788999999999999987643  22456777787765543 34446777889999999998876554 3333


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCe--EEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKT--VKIWAVENKSSVKQILALPPFNSSVTALS  204 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~  204 (298)
                      .++......      .................+++++..++.. ..+|.  |.+.++......    .+...........
T Consensus       108 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----~~~~~~~~~~~~~  177 (269)
T d2hqsa1         108 NLYVMDLAS------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDAD  177 (269)
T ss_dssp             EEEEEETTT------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEE
T ss_pred             ceeeccccc------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce----eeecccccccccc
Confidence            344333221      1122222333444555677766655444 34554  555566554432    2333556677889


Q ss_pred             EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555          205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS  284 (298)
Q Consensus       205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  284 (298)
                      |+|++.    .++......+...+|......            ......    .+........|+|||       +.|+.
T Consensus       178 ~spdg~----~~~~~~~~~~~~~i~~~~~~~------------~~~~~~----~~~~~~~~p~~SPDG-------~~i~f  230 (269)
T d2hqsa1         178 VSSDGK----FMVMVSSNGGQQHIAKQDLAT------------GGVQVL----SSTFLDETPSLAPNG-------TMVIY  230 (269)
T ss_dssp             ECTTSS----EEEEEEECSSCEEEEEEETTT------------CCEEEC----CCSSSCEEEEECTTS-------SEEEE
T ss_pred             cccccc----eeEEEeecCCceeeeEeeccc------------ccceEe----ecCccccceEECCCC-------CEEEE
Confidence            999983    344444455566666555431            111111    134455678899999       56654


Q ss_pred             eeC---CCcEEEeEe
Q 037555          285 CGA---DNTVRVFQV  296 (298)
Q Consensus       285 ~~~---d~~i~iw~~  296 (298)
                      .+.   ...|.++++
T Consensus       231 ~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         231 SSSQGMGSVLNLVST  245 (269)
T ss_dssp             EEEETTEEEEEEEET
T ss_pred             EEcCCCCcEEEEEEC
Confidence            432   234566654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=4.1e-08  Score=74.22  Aligned_cols=194  Identities=7%  Similarity=-0.035  Sum_probs=126.8

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      ....+++++++.++++.     ...+.+++++..+...+..... .....++++.++++++++-..+..+..++..... 
T Consensus        58 ~p~gvav~~~g~i~v~d-----~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-  130 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTD-----FNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-  130 (260)
T ss_dssp             SCCCEEECTTCCEEEEE-----TTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-
T ss_pred             CceEEEEcCCCCEEEee-----eeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccce-
Confidence            46788999999887776     3467777776655554444332 3456899999999988877667777777654321 


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEE
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL  217 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  217 (298)
                           ...... ........++++++++.+++...++.|..+|........   .....-.....+++.+++     .++
T Consensus       131 -----~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~---~~~~~~~~p~gi~~d~~g-----~l~  196 (260)
T d1rwia_         131 -----QTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAG-----TVY  196 (260)
T ss_dssp             -----CEECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTC-----CEE
T ss_pred             -----eeeeee-cccCCcceeeecCCCCEeeeccccccccccccccceeee---eeccccCCCccceeeeee-----eee
Confidence                 111111 112345689999999988888888899999987654322   212233556889999987     677


Q ss_pred             EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555          218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ  295 (298)
Q Consensus       218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~  295 (298)
                      ++....+.|..++.....              ...+.  ...-.....|++++++       .++++-..+++|+.++
T Consensus       197 vsd~~~~~i~~~~~~~~~--------------~~~~~--~~~~~~P~~i~~d~~g-------~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         197 VTEHNTNQVVKLLAGSTT--------------STVLP--FTGLNTPLAVAVDSDR-------TVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEETTTTEEEEECTTCSC--------------CEECC--CCSCCCEEEEEECTTC-------CEEEEEGGGTEEEEEC
T ss_pred             eeecCCCEEEEEeCCCCe--------------EEEEc--cCCCCCeEEEEEeCCC-------CEEEEECCCCEEEEEe
Confidence            777777888877654321              11111  1122456789999998       7888777777776544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.09  E-value=5e-09  Score=84.29  Aligned_cols=192  Identities=8%  Similarity=0.019  Sum_probs=113.8

Q ss_pred             CCceEEEEEEcCCceeeecccc------------------------------ccccEEEEEEcCCCCEEEEE-eCCCeEE
Q 037555           80 TAAAEIWLWEVGSWKAMGRLQS------------------------------HSLTVTQIRFSHDDNLLLSV-SRDRQFS  128 (298)
Q Consensus        80 ~~d~~i~vw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~dg~i~  128 (298)
                      +.+|+|++|++.+++.++++..                              |.........+|||++|++. ..+..|.
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA   97 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEE
Confidence            4588999999988876655311                              22334555567899988665 4688999


Q ss_pred             EEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCE--EEEeeCCC-----------------eEEEEEccCCccee
Q 037555          129 VFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHE--FATGSRDK-----------------TVKIWAVENKSSVK  188 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~~wd~~~~~~~~  188 (298)
                      ++|+.+       .+....+. ++...+..++|+|++++  ++..+.+.                 .+..+|..+.+...
T Consensus        98 vIDl~t-------~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          98 RIRLDI-------MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             EEETTT-------TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             EEECCC-------CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            999987       44444443 34667899999999974  44333322                 23457777766655


Q ss_pred             eeeecCCCCCceEEEEEeeccccCCccEEEEeecCC---------------cEEEEEeeecccc-----cccCCCC----
Q 037555          189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG---------------VIELWSISVNRTN-----DVSTPAP----  244 (298)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg---------------~i~vwd~~~~~~~-----~~~~~~~----  244 (298)
                      .+   . .......+.++|++     .++++.+.+.               .|.+.+.......     .......    
T Consensus       171 qI---~-v~~~p~~v~~spdG-----k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v  241 (441)
T d1qnia2         171 QV---I-VDGNLDNTDADYTG-----KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV  241 (441)
T ss_dssp             EE---E-ESSCCCCEEECSSS-----SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             EE---e-cCCCccceEECCCC-----CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence            33   2 23456789999999     5666665432               1222222110000     0000000    


Q ss_pred             ----CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          245 ----STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       245 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                          .....+..+.   . ......+.++||++      .+++++..+++|.+||+.
T Consensus       242 vd~~~~~~v~~~IP---v-gksPhGv~vSPDGk------yl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         242 VDGRGESEFTRYIP---V-PKNPHGLNTSPDGK------YFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EECSSSCSSEEEEC---C-BSSCCCEEECTTSC------EEEEECTTSSBEEEEEGG
T ss_pred             EEcccCCceEEEEe---C-CCCccCceECCCCC------EEEEeCCcCCcEEEEEee
Confidence                0001222221   1 22356789999993      455778899999999974

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.99  E-value=7.6e-07  Score=70.58  Aligned_cols=168  Identities=7%  Similarity=0.060  Sum_probs=100.7

Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccCCCEEEEee-CCCeEEEEE
Q 037555          105 TVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWA  180 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd  180 (298)
                      .+.++.|+|+|++++++.. ...|.+|+......    .......  .........++|+|+++++++.. .++.|.+|+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~----~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGE----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc----eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            4789999999998888765 45788888664322    1112211  12345678999999999886665 578999999


Q ss_pred             ccCCccee--eeeec---C-----------CCCCceEEEEEeeccccCCccEEEEeec-C-----CcEEEEEeeeccccc
Q 037555          181 VENKSSVK--QILAL---P-----------PFNSSVTALSWVGLDRQKNHGFLAVGME-S-----GVIELWSISVNRTND  238 (298)
Q Consensus       181 ~~~~~~~~--~~~~~---~-----------~~~~~v~~~~~~~~~~~~~~~~l~~g~~-d-----g~i~vwd~~~~~~~~  238 (298)
                      +.......  .....   .           ........+.++|++     .+|+++.. +     +.|..|++...... 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-----~~lyvsnr~~~~~~~~~i~~~~~~~~g~~-  295 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-----KYMFASSRANKFELQGYIAGFKLRDCGSI-  295 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-----SEEEEEEEESSTTSCCEEEEEEECTTSCE-
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-----CEEEEEcccCCCccceEEEEEEecCCCce-
Confidence            87654321  11111   0           112235678999999     67766542 2     23666665432110 


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeec-CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-HEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                               .....+............++++| +++      .++++...++.|.+|+++
T Consensus       296 ---------~~~~~~~~~~~~G~~p~~i~~~p~~G~------~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         296 ---------EKQLFLSPTPTSGGHSNAVSPCPWSDE------WMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             ---------EEEEEEEECSSCCTTCCCEEECTTCTT------EEEEECSSSCEEEEEEEE
T ss_pred             ---------eeEeEeeEEEcCCCCccEEEecCCCCC------EEEEEeCCCCeEEEEEEe
Confidence                     11111111222334567789998 662      344555678999999864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=5.1e-07  Score=70.19  Aligned_cols=213  Identities=14%  Similarity=0.101  Sum_probs=124.7

Q ss_pred             eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC--CeEEE
Q 037555           52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD--RQFSV  129 (298)
Q Consensus        52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i  129 (298)
                      +......+..++|.++|++.++-     ...+.|..|+.++.+....+.........++++++|+++++...+  ....+
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D-----~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLD-----VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             eccCCcCcEeCEECCCCCEEEEE-----CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeE
Confidence            33344556799999999976665     457899999988766555554455667899999999887775432  23344


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFNSSVTAL  203 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~  203 (298)
                      +.+......   ......-.........+++.++|++.++...      .+.+..++..... +..+   ...-...+.+
T Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~---~~~~~~pnGi  182 (319)
T d2dg1a1         110 FAATENGDN---LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPI---IQNISVANGI  182 (319)
T ss_dssp             EEECTTSCS---CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEE---EEEESSEEEE
T ss_pred             EEEcCCCce---eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEE---eeccceeeee
Confidence            444332211   1111111111234678999999987665432      1335555544322 2211   1122345789


Q ss_pred             EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555          204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA  283 (298)
Q Consensus       204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  283 (298)
                      +|+|++.    .+.++-+..+.|+.|++........        ..................|++..++       ++.+
T Consensus       183 a~s~dg~----~lyvad~~~~~I~~~d~~~~g~~~~--------~~~~~~~~~~~~~~~PdGl~vD~~G-------~l~V  243 (319)
T d2dg1a1         183 ALSTDEK----VLWVTETTANRLHRIALEDDGVTIQ--------PFGATIPYYFTGHEGPDSCCIDSDD-------NLYV  243 (319)
T ss_dssp             EECTTSS----EEEEEEGGGTEEEEEEECTTSSSEE--------EEEEEEEEECCSSSEEEEEEEBTTC-------CEEE
T ss_pred             eeccccc----eEEEecccCCceEEEEEcCCCceec--------cccceeeeccCCccceeeeeEcCCC-------CEEE
Confidence            9999882    3445556788999999864311100        0111111011112335679999998       7888


Q ss_pred             eeeCCCcEEEeE
Q 037555          284 SCGADNTVRVFQ  295 (298)
Q Consensus       284 s~~~d~~i~iw~  295 (298)
                      +....+.|.+|+
T Consensus       244 a~~~~g~V~~~~  255 (319)
T d2dg1a1         244 AMYGQGRVLVFN  255 (319)
T ss_dssp             EEETTTEEEEEC
T ss_pred             EEcCCCEEEEEC
Confidence            877888888876

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=5.6e-08  Score=73.44  Aligned_cols=196  Identities=9%  Similarity=0.003  Sum_probs=121.0

Q ss_pred             CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555           56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR  134 (298)
Q Consensus        56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (298)
                      .-....++++++|...++..    ...+.+..++....... ..+.+ ......++++++++++++....+.+++++-..
T Consensus        13 ~~~P~~vavd~dG~i~v~~~----~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSE----GMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEC----SSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             cCCCCEEEEcCCCCEEEEEc----CCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            34568999999999777653    23577777766543322 22222 23356789999998877776666666554332


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                             ...+.... .......+++.++++++++-..+..+..++........  .... .......+++.+++     
T Consensus        88 -------~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~--~~~~-~~~~p~~i~~~~~g-----  151 (260)
T d1rwia_          88 -------NQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--LPFT-GLNDPDGVAVDNSG-----  151 (260)
T ss_dssp             -------CCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE--CCCC-SCCSCCEEEECTTC-----
T ss_pred             -------ceeeeeee-eeeecccccccccceeEeeccccccccccccccceeee--eeec-ccCCcceeeecCCC-----
Confidence                   11222221 22456889999999888776667777777765543322  1112 23445789999887     


Q ss_pred             cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555          215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF  294 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  294 (298)
                      .++++...++.|..++.....             . ..+  ..........|++.+++       +++++....+.|..+
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~-------------~-~~~--~~~~~~~p~gi~~d~~g-------~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNN-------------Q-VVL--PFTDITAPWGIAVDEAG-------TVYVTEHNTNQVVKL  208 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCC-------------E-EEC--CCSSCCSEEEEEECTTC-------CEEEEETTTTEEEEE
T ss_pred             CEeeeccccccccccccccce-------------e-eee--eccccCCCccceeeeee-------eeeeeecCCCEEEEE
Confidence            677777778888888876431             1 111  11233445788898888       777777777777665


Q ss_pred             E
Q 037555          295 Q  295 (298)
Q Consensus       295 ~  295 (298)
                      +
T Consensus       209 ~  209 (260)
T d1rwia_         209 L  209 (260)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=5e-07  Score=68.22  Aligned_cols=222  Identities=11%  Similarity=0.032  Sum_probs=128.4

Q ss_pred             CcccccccCCCCCceeeeccCCCcccccccCC-------------CCceEEeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555           14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL-------------WPESHKLYGHGNELFSLCCDHQGKLVASSCKAQST   80 (298)
Q Consensus        14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~   80 (298)
                      |.....+..+...+....++ |+++.|+....             ......+..+........|+|+|+.++......  
T Consensus        28 G~~~~~l~~~~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~--  104 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--  104 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT--
T ss_pred             CCCcEEEecCCCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC--
Confidence            33334444445666677888 67777765411             123456667788899999999999998876421  


Q ss_pred             CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555           81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS  159 (298)
Q Consensus        81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  159 (298)
                      ....+..+............ .........+++++..+ ++...+|...+|......      .....+...........
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~------~~~~~~~~~~~~~~~~~  177 (269)
T d2hqsa1         105 GSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING------GAPQRITWEGSQNQDAD  177 (269)
T ss_dssp             SSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------SCCEECCCSSSEEEEEE
T ss_pred             Cccceeecccccccceeeee-ccccccccccccccccceecccccCCceEeeeeccc------ccceeeecccccccccc
Confidence            12334444444333333333 34444556677776654 444556655555544322      12233344566777889


Q ss_pred             EccCCCEEEEeeCC-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cC--CcEEEEEeeecc
Q 037555          160 WNPFGHEFATGSRD-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ES--GVIELWSISVNR  235 (298)
Q Consensus       160 ~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~d--g~i~vwd~~~~~  235 (298)
                      |+|++..++..+.+ +...+|.........   .............|+|+|     +.|+..+ ..  ..|+++++..+ 
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~p~~SPDG-----~~i~f~s~~~~~~~l~~~~~dg~-  248 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTFLDETPSLAPNG-----TMVIYSSSQGMGSVLNLVSTDGR-  248 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSSSCEEEEECTTS-----SEEEEEEEETTEEEEEEEETTSC-
T ss_pred             cccccceeEEEeecCCceeeeEeecccccc---eEeecCccccceEECCCC-----CEEEEEEcCCCCcEEEEEECCCC-
Confidence            99999988777654 444444433322222   122245566788999999     5555433 32  36777887654 


Q ss_pred             cccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555          236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT  270 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (298)
                                  . ...   +......+...+|+|
T Consensus       249 ------------~-~~~---lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 ------------F-KAR---LPATDGQVKFPAWSP  267 (269)
T ss_dssp             ------------C-EEE---CCCSSSEEEEEEECC
T ss_pred             ------------C-EEE---EeCCCCcEEeEEeCC
Confidence                        2 122   223456788889998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=9.1e-07  Score=67.35  Aligned_cols=196  Identities=8%  Similarity=0.098  Sum_probs=128.0

Q ss_pred             eEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555           59 LFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG  136 (298)
Q Consensus        59 v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (298)
                      ...+++.++.. .+++..    ..++.|.+++.. ++....+. ........+++.++++++++....+.+.+++..   
T Consensus        72 p~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~---  143 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTER----SPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---  143 (279)
T ss_dssp             EEEEEEETTTTEEEEEEC----GGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---
T ss_pred             cccccccccccccceecc----CCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC---
Confidence            44566555443 444332    346678888764 55554443 244567889999999988888878888888754   


Q ss_pred             CCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555          137 TGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH  214 (298)
Q Consensus       137 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (298)
                           ...+..+  ..+......+++.++++.+++....+.|++||... +.+..+ ...+.......|++.+++     
T Consensus       144 -----g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~-g~~g~~~~P~giavD~~G-----  211 (279)
T d1q7fa_         144 -----GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI-GGEGITNYPIGVGINSNG-----  211 (279)
T ss_dssp             -----SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE-SCTTTSCSEEEEEECTTC-----
T ss_pred             -----CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceeeee-cccccccCCcccccccCC-----
Confidence                 2333333  23456678899999998888888889999999764 444422 122344567899999988     


Q ss_pred             cEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          215 GFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       215 ~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                      +++++-.. ++.|.+|+.. +             +.+..+.. .........|++.|++       .+++ ++.+..|++
T Consensus       212 ~i~Vad~~~~~~v~~f~~~-G-------------~~~~~~~~-~~~~~~p~~vav~~dG-------~l~V-~~~n~~v~~  268 (279)
T d1q7fa_         212 EILIADNHNNFNLTIFTQD-G-------------QLISALES-KVKHAQCFDVALMDDG-------SVVL-ASKDYRLYI  268 (279)
T ss_dssp             CEEEEECSSSCEEEEECTT-S-------------CEEEEEEE-SSCCSCEEEEEEETTT-------EEEE-EETTTEEEE
T ss_pred             eEEEEECCCCcEEEEECCC-C-------------CEEEEEeC-CCCCCCEeEEEEeCCC-------cEEE-EeCCCeEEE
Confidence            66666443 4568888743 3             33333321 1223356889999998       6555 457899999


Q ss_pred             eEec
Q 037555          294 FQVN  297 (298)
Q Consensus       294 w~~~  297 (298)
                      |+..
T Consensus       269 fr~~  272 (279)
T d1q7fa_         269 YRYV  272 (279)
T ss_dssp             EECS
T ss_pred             EEee
Confidence            9865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.97  E-value=3.3e-07  Score=71.11  Aligned_cols=201  Identities=10%  Similarity=0.142  Sum_probs=121.9

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc----ccEEEEEEcCCCCEEEEEeCC---------
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS----LTVTQIRFSHDDNLLLSVSRD---------  124 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d---------  124 (298)
                      ....++|.+++..|+++..     ...|...+.+............    .....+++.++|++.++-...         
T Consensus        72 ~P~Gl~~~~dg~~l~vad~-----~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~  146 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADM-----RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CEEEEEECSSSSEEEEEET-----TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             cceeEEEeCCCCEEEEEEC-----CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccc
Confidence            3568999999998887742     4568888887544322111111    135789999999888774321         


Q ss_pred             ----CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC----EE-EEeeCCCeEEEEEccCCcceee---eee
Q 037555          125 ----RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH----EF-ATGSRDKTVKIWAVENKSSVKQ---ILA  192 (298)
Q Consensus       125 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l-~~~~~dg~i~~wd~~~~~~~~~---~~~  192 (298)
                          ..=++|.+...      ...... ...-..-+.++|+|++.    .| ++-+..+.|..||+.....+..   +..
T Consensus       147 ~~~~~~G~v~~~~~d------g~~~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~  219 (314)
T d1pjxa_         147 SMQEKFGSIYCFTTD------GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             TTSSSCEEEEEECTT------SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeccCCceEEEEeec------CceeEe-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE
Confidence                11133433321      111111 12223346789998764    44 4446678899998865433321   112


Q ss_pred             cCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555          193 LPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH  271 (298)
Q Consensus       193 ~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (298)
                      +.. .......+++..++     ++.++....+.|.+||...+             .....+.   .....+++++|.|+
T Consensus       220 ~~~~~~~~pdGiavD~~G-----nlyVa~~~~g~I~~~dp~~g-------------~~~~~i~---~p~~~~t~~afg~d  278 (314)
T d1pjxa_         220 IPGTHEGGADGMDFDEDN-----NLLVANWGSSHIEVFGPDGG-------------QPKMRIR---CPFEKPSNLHFKPQ  278 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTC-----CEEEEEETTTEEEEECTTCB-------------SCSEEEE---CSSSCEEEEEECTT
T ss_pred             ccccccccceeeEEecCC-----cEEEEEcCCCEEEEEeCCCC-------------EEEEEEE---CCCCCEEEEEEeCC
Confidence            222 12345678898888     67777777889999987755             2223222   23456789999998


Q ss_pred             CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          272 EKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       272 ~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ++      .+++|.+.++.|...++.
T Consensus       279 ~~------~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         279 TK------TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SS------EEEEEETTTTEEEEEECS
T ss_pred             CC------EEEEEECCCCcEEEEECC
Confidence            73      577888888888777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.95  E-value=7.3e-07  Score=70.67  Aligned_cols=194  Identities=9%  Similarity=-0.008  Sum_probs=106.6

Q ss_pred             CCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeecc-cc
Q 037555           24 PDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRL-QS  101 (298)
Q Consensus        24 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~-~~  101 (298)
                      +..|..+.|+...+..      +............+.-|+|+|+++.|.++.      .+.+..|.+.. +...... ..
T Consensus        13 ~~~i~~~~fd~~~~~l------~~~~~~~~~~~~~~s~la~s~d~~~ly~~~------~~~~~~~~i~~~~~~~~~~~~~   80 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTC------KLIKRTEIPQDEPISWMTFDHERKNIYGAA------MKKWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             SCEEEEEEEETTTTEE------EEEEEEECCTTCCCSEEEECTTSSEEEEEE------BTEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeE------EEeeeeeccCCCCCCEEEEcCCCCEEEEEe------CCcEEEEEEeCCCCeEEEeeec
Confidence            3457777777544421      101111223455567799999999998875      34566666543 2222111 11


Q ss_pred             ccccEEEEEEcCCCCEE--EEEe-CCCeEEEEEeccCCCC----------ccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555          102 HSLTVTQIRFSHDDNLL--LSVS-RDRQFSVFAIQRTGTG----------EIDYQLIARQEAHKRIIWSCSWNPFGHEFA  168 (298)
Q Consensus       102 ~~~~v~~~~~~~~~~~l--~~~~-~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (298)
                      .......+.++++++.+  +++. ..+.+..+.+......          ................+.++.|+|++++++
T Consensus        81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~  160 (365)
T d1jofa_          81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence            12234456778888743  3322 2345554443221100          000001111111223478999999999888


Q ss_pred             EeeC-CCeEEEEEccCCcceeeeee--cCCCCCceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeec
Q 037555          169 TGSR-DKTVKIWAVENKSSVKQILA--LPPFNSSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVN  234 (298)
Q Consensus       169 ~~~~-dg~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~  234 (298)
                      ++.. ...|.+|+......+.....  ........+.++|+|++     .++ ++...++.|.+|++...
T Consensus       161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg-----~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-----NYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTT
T ss_pred             EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCC-----ceEEEeccCCCEEEEEEecCC
Confidence            8864 45788888764333221111  22235678999999999     455 45556889999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=1.4e-05  Score=61.69  Aligned_cols=214  Identities=10%  Similarity=0.062  Sum_probs=122.2

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccC--CCCceEEEEEEcCCceeeecccc----ccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQ--STAAAEIWLWEVGSWKAMGRLQS----HSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      .-.....++|.++|+++++.....  ...+++|..||..+++.......    ....-..++|.++++.++++...+.+.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            334466789999999887653200  01246799999887754332221    122357899999999888888777788


Q ss_pred             EEEeccCCCCccceeeeEEeeccC---CceEEEEEccCCCEEEEeeC---------------CCeEEEEEccCCcceeee
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHK---RIIWSCSWNPFGHEFATGSR---------------DKTVKIWAVENKSSVKQI  190 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~---------------dg~i~~wd~~~~~~~~~~  190 (298)
                      .++.....      ..+.......   ...+.+++.++|++.++-..               .|.|..++.. ++.....
T Consensus        96 ~~~~~g~~------~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~  168 (314)
T d1pjxa_          96 VVQTDGTF------EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEETTSCE------EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             EEeCCCcE------EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee
Confidence            88865421      1111111111   12577899999988776421               2344444432 2222211


Q ss_pred             eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-ccceEEEEEee
Q 037555          191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-HVAAVNRMAWK  269 (298)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  269 (298)
                          ..-...+.++|+|++......++++-+..+.|..|++......          .....+..+.+ .......|++.
T Consensus       169 ----~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~----------~~~~~~~~~~~~~~~~pdGiavD  234 (314)
T d1pjxa_         169 ----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----------ENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             ----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----------EEEEEEEECCCCSSCEEEEEEEB
T ss_pred             ----CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc----------ceeeEEEEccccccccceeeEEe
Confidence                1122346889998762111124445567788999988654211          11111111111 23345688999


Q ss_pred             cCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555          270 THEKPKNSRTMQLASCGADNTVRVFQV  296 (298)
Q Consensus       270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~  296 (298)
                      .++       +++++....+.|.+||.
T Consensus       235 ~~G-------nlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         235 EDN-------NLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             TTC-------CEEEEEETTTEEEEECT
T ss_pred             cCC-------cEEEEEcCCCEEEEEeC
Confidence            988       77777777788888874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=3.5e-06  Score=64.77  Aligned_cols=115  Identities=10%  Similarity=0.129  Sum_probs=84.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC
Q 037555          105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK  184 (298)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  184 (298)
                      .+..++++|||+++++...+++|..++...        . ...+......+.+++|+++++++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g--------~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG--------N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC--------C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC--------C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            577899999999999999999988887543        1 2233445678899999999999998888888888887654


Q ss_pred             ccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          185 SSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       185 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .... .+... ........+++.+++     .++++.+.++.+..++....
T Consensus       100 ~~~~~~~~~~-~~~~~~n~i~~~~~g-----~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1         100 DGTVETLLTL-PDAIFLNGITPLSDT-----QYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             TSCEEEEEEC-TTCSCEEEEEESSSS-----EEEEEETTTTEEEEEETTTT
T ss_pred             ccceeecccc-CCccccceeEEccCC-----CEEeeccccccceeeeccCC
Confidence            3322 22222 244567899999988     67777777788877776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.70  E-value=2.3e-05  Score=59.33  Aligned_cols=195  Identities=7%  Similarity=0.067  Sum_probs=124.4

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCC-CEEEEE-eCCCeEEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDD-NLLLSV-SRDRQFSV  129 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~~~-~~dg~i~i  129 (298)
                      ....++++++|+++++-     ...+.|++||.+ ++.+..+..      .......+++.++. ..+++. +.++.|..
T Consensus        24 ~P~gvavd~dg~i~VaD-----~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVAD-----TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEE-----GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCCEEEEE-----CCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            47899999999977775     347899999976 665554421      12234456655543 334333 34556766


Q ss_pred             EEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          130 FAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      ++..        ......+. ........+++.++++.+++....+.+.+++... +.+..+ ....+......+++.++
T Consensus        98 ~~~~--------g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~-g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          98 YNQY--------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKF-GCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             ECTT--------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE-ECTTTCSSEEEEEECSS
T ss_pred             cccc--------ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecc-cccccccccceeeeccc
Confidence            6644        22333332 2345567899999998888877778888888653 333422 22335566788899888


Q ss_pred             cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-
Q 037555          209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-  287 (298)
Q Consensus       209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-  287 (298)
                      +     .++++....+.|++||...              +.+..+. ..+.......|++.+++       +++++-.. 
T Consensus       168 g-----~i~v~d~~~~~V~~~d~~G--------------~~~~~~g-~~g~~~~P~giavD~~G-------~i~Vad~~~  220 (279)
T d1q7fa_         168 Q-----EIFISDNRAHCVKVFNYEG--------------QYLRQIG-GEGITNYPIGVGINSNG-------EILIADNHN  220 (279)
T ss_dssp             S-----EEEEEEGGGTEEEEEETTC--------------CEEEEES-CTTTSCSEEEEEECTTC-------CEEEEECSS
T ss_pred             e-----eEEeeeccccceeeeecCC--------------ceeeeec-ccccccCCcccccccCC-------eEEEEECCC
Confidence            7     6888888889999998653              3333332 22344557788999988       66666443 


Q ss_pred             CCcEEEeE
Q 037555          288 DNTVRVFQ  295 (298)
Q Consensus       288 d~~i~iw~  295 (298)
                      +..|.+|+
T Consensus       221 ~~~v~~f~  228 (279)
T d1q7fa_         221 NFNLTIFT  228 (279)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEEC
Confidence            44677765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=8e-05  Score=57.42  Aligned_cols=192  Identities=7%  Similarity=-0.002  Sum_probs=112.1

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcCCCCEEEEEeCC------
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRD------  124 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------  124 (298)
                      .........++++++|+++++...+. ...+.|...+...........  .-......+++.++|++.++-...      
T Consensus        78 ~~~~~~p~gla~~~dG~l~va~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~  156 (319)
T d2dg1a1          78 VSHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  156 (319)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eCCCCCeeEEEECCCCCEEEEecCCC-ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCc
Confidence            34455678999999999887753211 113445555655443332222  123357889999999877664321      


Q ss_pred             CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcce-e----eeeecCCCCC
Q 037555          125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSV-K----QILALPPFNS  198 (298)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~-~----~~~~~~~~~~  198 (298)
                      +.+..++...        ..+..+...-...+.++|+|+++.|+.+ +..++|..||+...... .    ..........
T Consensus       157 g~v~~~~~dg--------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~  228 (319)
T d2dg1a1         157 GGVYYVSPDF--------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE  228 (319)
T ss_dssp             EEEEEECTTS--------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred             ceeEEEeccc--------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc
Confidence            2233333321        1122222223345789999999876555 56789999998643211 1    0001111223


Q ss_pred             ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc---CCcccceEEEEEeecCC
Q 037555          199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP---FACHVAAVNRMAWKTHE  272 (298)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~  272 (298)
                      ..-.|++..++     ++.++....+.|.+|+. .+             +.+..+.-   ..++...+++++|.++.
T Consensus       229 ~PdGl~vD~~G-----~l~Va~~~~g~V~~~~p-~G-------------~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         229 GPDSCCIDSDD-----NLYVAMYGQGRVLVFNK-RG-------------YPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             EEEEEEEBTTC-----CEEEEEETTTEEEEECT-TS-------------CEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ceeeeeEcCCC-----CEEEEEcCCCEEEEECC-CC-------------cEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            35678898888     77777778899999995 34             34443321   11344567899998877

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-06  Score=72.10  Aligned_cols=152  Identities=13%  Similarity=0.149  Sum_probs=97.5

Q ss_pred             EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEcCCCCEEEEEe---------CCCeEEE
Q 037555           62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFSHDDNLLLSVS---------RDRQFSV  129 (298)
Q Consensus        62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~dg~i~i  129 (298)
                      ..|.+++.++...      .+|.|.+||+.+++....+..   ....+....|+||+++++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~~------~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYRE------QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCCC------SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEEe------CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            3577887765433      477899999987765332322   223567788999999887764         3578889


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc----------
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS----------  199 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~----------  199 (298)
                      +|+.+..     ...+.........+....|+|+|+.+|... ++.|.+.+...+...+..  ..+....          
T Consensus        96 ~d~~~~~-----~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt--~~g~~~~i~nG~~d~vy  167 (465)
T d1xfda1          96 SKIPHGD-----PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV--STGKEGVIYNGLSDWLY  167 (465)
T ss_dssp             EESSSCC-----CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE--CCCBTTTEEEEECCHHH
T ss_pred             EEccCCc-----eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEe--cccCcceeeccccchhh
Confidence            9988643     122222222334566688999999998877 567888888776554422  1121111          


Q ss_pred             -------eEEEEEeeccccCCccEEEEee-cCCcEEEEEee
Q 037555          200 -------VTALSWVGLDRQKNHGFLAVGM-ESGVIELWSIS  232 (298)
Q Consensus       200 -------v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~  232 (298)
                             -..+.|+|++     ..|+... .+..|..+.+.
T Consensus       168 eee~~~~~~a~~WSPDg-----k~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         168 EEEILKTHIAHWWSPDG-----TRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             HHTTSSSSEEEEECTTS-----SEEEEEEEECTTSCEEEEC
T ss_pred             hhhhccccceEEECCCC-----CeEEEEEecccccceeecc
Confidence                   2467899999     5666654 45666666654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=9e-05  Score=56.45  Aligned_cols=190  Identities=9%  Similarity=0.045  Sum_probs=120.7

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc--c--cccccEEEEEEcCCCCEEEEEeC----CCe
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL--Q--SHSLTVTQIRFSHDDNLLLSVSR----DRQ  126 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~----dg~  126 (298)
                      ....+.++++.++|.+++++       ...|.++|..+++.....  .  .....+..+.+.|+|++.++...    .+.
T Consensus        57 ~~~~~~~i~~~~dg~l~va~-------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~  129 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIAS-------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA  129 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred             CCCCcEEEEEecCCCEEEEE-------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccc
Confidence            45678899999999888766       345889999887653322  1  12346889999999997776543    234


Q ss_pred             EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcc-----eeeeeecCCCCCce
Q 037555          127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSS-----VKQILALPPFNSSV  200 (298)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~v  200 (298)
                      -.+|.+...       ...... ..-..-+.++|+++++.++.+ +..+.|..+++.....     ...+..........
T Consensus       130 g~l~~~~~g-------~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p  201 (295)
T d2ghsa1         130 GSIYHVAKG-------KVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM  201 (295)
T ss_dssp             EEEEEEETT-------EEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred             eeEeeecCC-------cEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccc
Confidence            456666542       222222 223345789999999866554 5678899888753221     11122333445567


Q ss_pred             EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCcc
Q 037555          201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSRT  279 (298)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  279 (298)
                      ..+++..++     ++.++.-..+.|..||.. +             +.+..+. +  ....+++++|- ++.+      
T Consensus       202 dG~~vD~~G-----nlWva~~~~g~V~~~dp~-G-------------~~~~~i~-l--P~~~~T~~~FGG~d~~------  253 (295)
T d2ghsa1         202 DGSVCDAEG-----HIWNARWGEGAVDRYDTD-G-------------NHIARYE-V--PGKQTTCPAFIGPDAS------  253 (295)
T ss_dssp             EEEEECTTS-----CEEEEEETTTEEEEECTT-C-------------CEEEEEE-C--SCSBEEEEEEESTTSC------
T ss_pred             cceEEcCCC-----CEEeeeeCCCceEEecCC-C-------------cEeeEec-C--CCCceEEEEEeCCCCC------
Confidence            888888887     666666677889999854 4             4444443 1  23568999996 4542      


Q ss_pred             eEEEeeeC
Q 037555          280 MQLASCGA  287 (298)
Q Consensus       280 ~~l~s~~~  287 (298)
                      .+++|.+.
T Consensus       254 ~LyvTta~  261 (295)
T d2ghsa1         254 RLLVTSAR  261 (295)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEECC
Confidence            66676554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.40  E-value=2.8e-05  Score=58.51  Aligned_cols=97  Identities=11%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             EEcCC--CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-C---C--eEEEEEecc
Q 037555           63 CCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-D---R--QFSVFAIQR  134 (298)
Q Consensus        63 ~~s~~--~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---g--~i~iwd~~~  134 (298)
                      ..+|+  |+.+|..+      ++.|.+.|+.+++.. .+..+...+...+|+|||+.|+-... +   .  .|.+++...
T Consensus         5 ~~sPdi~G~~v~f~~------~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC------CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEEE------TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEEe------CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            35788  99888764      567999999977754 46657778899999999998875532 2   2  355555543


Q ss_pred             CCCCccceeeeE----EeeccCCceEEEEEccCCCEEEEee
Q 037555          135 TGTGEIDYQLIA----RQEAHKRIIWSCSWNPFGHEFATGS  171 (298)
Q Consensus       135 ~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~  171 (298)
                      +..     ..+.    .............|+|+++.|+...
T Consensus        78 g~~-----~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          78 GEI-----KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TEE-----EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             Cce-----EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            211     1111    0011123346788999999887653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.00032  Score=53.26  Aligned_cols=200  Identities=10%  Similarity=-0.051  Sum_probs=118.3

Q ss_pred             EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555           60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE  139 (298)
Q Consensus        60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (298)
                      -+..|++....|.-.-    ...+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ -+.++|..+..   
T Consensus        21 Egp~wd~~~~~l~wvD----i~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~---   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFN----ILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV---   89 (295)
T ss_dssp             EEEEEETTTTEEEEEE----GGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC---
T ss_pred             eCCeEECCCCEEEEEE----CCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce---
Confidence            3566887555554442    24688999999877653 333 3456788999988876665 444 57788887642   


Q ss_pred             cceeeeEEeec--cCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          140 IDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       140 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                        ...+.....  ....++.+.+.|+|++.++...    .+.-.+|.+..++......    .-.....++|++++.   
T Consensus        90 --~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~----~~~~~Ng~~~s~d~~---  160 (295)
T d2ghsa1          90 --LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA----DISIPNSICFSPDGT---  160 (295)
T ss_dssp             --EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE----EESSEEEEEECTTSC---
T ss_pred             --eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee----ccCCcceeeecCCCc---
Confidence              222222111  1235788999999987776542    2345667666654433211    223457899999883   


Q ss_pred             ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555          214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV  293 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  293 (298)
                       .++++-+..+.|..|++........        .....+....+.......+++..++       ++.++.-..+.|..
T Consensus       161 -~l~~~dt~~~~I~~~~~d~~~~~~~--------~~~~~~~~~~~~~g~pdG~~vD~~G-------nlWva~~~~g~V~~  224 (295)
T d2ghsa1         161 -TGYFVDTKVNRLMRVPLDARTGLPT--------GKAEVFIDSTGIKGGMDGSVCDAEG-------HIWNARWGEGAVDR  224 (295)
T ss_dssp             -EEEEEETTTCEEEEEEBCTTTCCBS--------SCCEEEEECTTSSSEEEEEEECTTS-------CEEEEEETTTEEEE
T ss_pred             -eEEEeecccceeeEeeecccccccc--------cceEEEeccCcccccccceEEcCCC-------CEEeeeeCCCceEE
Confidence             4566666788899998754321110        1111111122334556778888877       56555545566766


Q ss_pred             eE
Q 037555          294 FQ  295 (298)
Q Consensus       294 w~  295 (298)
                      ||
T Consensus       225 ~d  226 (295)
T d2ghsa1         225 YD  226 (295)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.85  E-value=0.0026  Score=47.20  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             ceEEeccCCCceEEEEEcCCCCEEEeEeccC-CCCceEEEEEEcCCceeeeccc------cccccEEEEEEcCCCCEEEE
Q 037555           48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQ-STAAAEIWLWEVGSWKAMGRLQ------SHSLTVTQIRFSHDDNLLLS  120 (298)
Q Consensus        48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~-~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~  120 (298)
                      ..+.|..+.+.+...+|||||+.||...... ......|.+++..+++......      ..........|+|+++.|+.
T Consensus        32 ~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          32 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            4667777888899999999999998765321 1123468888888776654321      12234567889999998876


Q ss_pred             E
Q 037555          121 V  121 (298)
Q Consensus       121 ~  121 (298)
                      .
T Consensus       112 ~  112 (281)
T d1k32a2         112 T  112 (281)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.2e-05  Score=60.54  Aligned_cols=113  Identities=5%  Similarity=-0.000  Sum_probs=73.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEee---------CCCeEEE
Q 037555          109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGS---------RDKTVKI  178 (298)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~~  178 (298)
                      ..|.+++.++. -..+|.|.+||+.+...     ..+... ......+....|+||+++++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTS-----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCC-----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCE-----EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            46888876554 35578899999987532     111111 11223567788999999888764         3567899


Q ss_pred             EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      +|+.++.... +.........+....|+|++     ..|+... ++.|++.+...+
T Consensus        96 ~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG-----~~iafv~-~~nl~~~~~~~~  144 (465)
T d1xfda1          96 SKIPHGDPQS-LDPPEVSNAKLQYAGWGPKG-----QQLIFIF-ENNIYYCAHVGK  144 (465)
T ss_dssp             EESSSCCCEE-CCCTTCCSCCCSBCCBCSST-----TCEEEEE-TTEEEEESSSSS
T ss_pred             EEccCCceee-ccCccCCccccceeeeccCC-----ceEEEEe-cceEEEEecCCC
Confidence            9999876532 21222334556678999999     5666654 567888877654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.50  E-value=0.013  Score=45.83  Aligned_cols=208  Identities=10%  Similarity=0.069  Sum_probs=118.6

Q ss_pred             EEEEcC---CCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcC--CCCEEEEEeCCC---------
Q 037555           61 SLCCDH---QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSH--DDNLLLSVSRDR---------  125 (298)
Q Consensus        61 ~~~~s~---~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg---------  125 (298)
                      .+.+..   ||++|.+..+    .+.+|-+.|+.+.+..+.+.. -...+..++..+  +-.+++..+.+.         
T Consensus        89 ~~S~TdGtyDGrylFVNDk----an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEETTEEEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cccccCCccceeEEEEEcC----CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            566643   8999998864    588999999998887654332 334556666654  444676666532         


Q ss_pred             ---------eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC---------------eE-----
Q 037555          126 ---------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK---------------TV-----  176 (298)
Q Consensus       126 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i-----  176 (298)
                               .+.++|..+       .+...++. .......+.++++|+++++.+.+.               .+     
T Consensus       165 l~d~~~y~~~~t~ID~~t-------m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADK-------WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             TTCGG-EEEEEEEEETTT-------TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             ccchhhcceEEEEEecCC-------ceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence                     255666654       33333332 234566789999999988876431               13     


Q ss_pred             ------------------EEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555          177 ------------------KIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND  238 (298)
Q Consensus       177 ------------------~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  238 (298)
                                        .+-|.+.......+..++ -......+..+|++.    .+++++..+..+.|+|++.-....
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGK----yi~VaGKLs~tVSViD~~Ki~~~~  311 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKK----HLCVAGKLSPTVTVLDVTRFDAVF  311 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSS----EEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCC----EEEEeCCcCCcEEEEEehhhhhhh
Confidence                              333333211101000111 223356788999984    455556678999999997532111


Q ss_pred             ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      ..  .......+..-   .........-+|...+       +...|.=-|..|--|++.
T Consensus       312 ~~--~~~~~~~~~~e---~elglgPLht~fd~~g-------~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         312 YE--NADPRSAVVAE---PELGLGPLHTAFDGRG-------NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HS--CC-GGGGEEEC---CBCCSCEEEEEECTTS-------EEEEEETTTTEEEEEEHH
T ss_pred             cc--cCCccccEEee---cccCcCccccccCCCc-------eEEEEeeccceEEEEecc
Confidence            00  00000111110   1123334556787777       777777789999999863

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.019  Score=42.23  Aligned_cols=163  Identities=9%  Similarity=-0.032  Sum_probs=100.0

Q ss_pred             ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEE
Q 037555           53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFA  131 (298)
Q Consensus        53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd  131 (298)
                      ..+...+.+++|.+..+.|.-+.    ..++.|+..+++.......+......+.++++..-+..| .+-...+.|.+.+
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd----~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTD----ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEE----TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEE----CCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence            33445688899998877777664    346789998887554443343333567889998755555 4555678899998


Q ss_pred             eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555          132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL  208 (298)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (298)
                      +....     .  .............++++|...+++.....   ..|..-++....... +  ....-.....+++.+.
T Consensus       108 ~dg~~-----~--~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-i--~~~~~~~P~glaiD~~  177 (263)
T d1npea_         108 MDGTQ-----R--RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-L--AQDNLGLPNGLTFDAF  177 (263)
T ss_dssp             TTSCS-----C--EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-E--ECTTCSCEEEEEEETT
T ss_pred             cCCce-----E--EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-e--eeecccccceEEEeec
Confidence            87422     1  11122223567899999977777655432   234444555433222 1  1122345678999887


Q ss_pred             cccCCccEE-EEeecCCcEEEEEeeec
Q 037555          209 DRQKNHGFL-AVGMESGVIELWSISVN  234 (298)
Q Consensus       209 ~~~~~~~~l-~~g~~dg~i~vwd~~~~  234 (298)
                      .     +.| .+-...+.|...++...
T Consensus       178 ~-----~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         178 S-----SQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             T-----TEEEEEETTTTEEEEEETTEE
T ss_pred             C-----cEEEEEeCCCCEEEEEECCCC
Confidence            6     444 44456778888888654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.082  Score=38.77  Aligned_cols=162  Identities=7%  Similarity=-0.094  Sum_probs=95.0

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEE
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSV  129 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i  129 (298)
                      ....+.+++|++..+.|.-.-    ...+.|...+++...    ....+......+..+++.+-+. +..+-...+.|.+
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D----~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEE----TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEE----CCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEe
Confidence            445677999998888777663    235677777665321    1111222234466788876444 4444456788999


Q ss_pred             EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555          130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG  207 (298)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  207 (298)
                      .++...       ...............++++|...+|+...  ..+.|...++....... +  ....-.....+++.+
T Consensus       104 ~~~~g~-------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~-l--~~~~~~~p~gl~iD~  173 (266)
T d1ijqa1         104 ADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-L--VTENIQWPNGITLDL  173 (266)
T ss_dssp             EETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-E--ECSSCSCEEEEEEET
T ss_pred             EecCCc-------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec-c--cccccceeeEEEeec
Confidence            998742       22222333445678899999666665544  34567667776543322 1  122234568899998


Q ss_pred             ccccCCccEEEEeecCCcEEEEEeeec
Q 037555          208 LDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .+.    .+..+-...+.|...++...
T Consensus       174 ~~~----~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         174 LSG----RLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             TTT----EEEEEETTTTEEEEEETTSC
T ss_pred             ccc----EEEEecCCcCEEEEEECCCC
Confidence            762    34444455678888887543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.46  E-value=0.12  Score=39.51  Aligned_cols=198  Identities=12%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc------CCCCEEEEEe-CC---CeEEEEEeccCC
Q 037555           67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS------HDDNLLLSVS-RD---RQFSVFAIQRTG  136 (298)
Q Consensus        67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~-~d---g~i~iwd~~~~~  136 (298)
                      +..+++...+     .+-|++||++ |+.+..+.  .+.+..+..-      ....-+++++ ++   -.|.+|.+....
T Consensus        39 ~~SlI~gTdK-----~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          39 QNSKLITTNK-----KSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             GGCEEEEEET-----TSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             CccEEEEEcC-----cCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc
Confidence            4456666633     4459999996 77777665  2344444432      2222344444 22   368888876422


Q ss_pred             CCccceeeeEEeec-------cCCceEEEEE--ccC-CC-EEEEeeCCCeEEEEEccCCc---c-eeeeeecCCCCCceE
Q 037555          137 TGEIDYQLIARQEA-------HKRIIWSCSW--NPF-GH-EFATGSRDKTVKIWAVENKS---S-VKQILALPPFNSSVT  201 (298)
Q Consensus       137 ~~~~~~~~~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~wd~~~~~---~-~~~~~~~~~~~~~v~  201 (298)
                      .      .+..+..       ....+..+|+  ++. +. ++++...+|.+..|.+....   . ...+..+. ....+.
T Consensus       111 ~------~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~E  183 (353)
T d1h6la_         111 G------TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTE  183 (353)
T ss_dssp             T------EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEE
T ss_pred             c------ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccc
Confidence            1      1111111       1224667777  554 44 45666678999988774321   1 22233443 456788


Q ss_pred             EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555          202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ  281 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  281 (298)
                      .+.+....     ..|+.+-++.-|..++.........        ..+.... -.....-+..|+.-...   ..++.+
T Consensus       184 GCVvDde~-----~~LyisEE~~Giw~~~a~~~~~~~~--------~~i~~~~-g~~l~~D~EGlaiy~~~---~~~Gyl  246 (353)
T d1h6la_         184 GMAADDEY-----GSLYIAEEDEAIWKFSAEPDGGSNG--------TVIDRAD-GRHLTPDIEGLTIYYAA---DGKGYL  246 (353)
T ss_dssp             EEEEETTT-----TEEEEEETTTEEEEEESSTTSCSCC--------EEEEECS-SSSCCSCEEEEEEEECG---GGCEEE
T ss_pred             eEEEeCCC-----CcEEEecCccceEEEEeccCCCccc--------eeeeccc-CccccCCccccEEEEcC---CCCeEE
Confidence            99999887     6888887776555554432211100        1111111 11234566777655432   012356


Q ss_pred             EEeeeCCCcEEEeEe
Q 037555          282 LASCGADNTVRVFQV  296 (298)
Q Consensus       282 l~s~~~d~~i~iw~~  296 (298)
                      |+|.-.+++..+||-
T Consensus       247 ivSsQG~n~f~vydr  261 (353)
T d1h6la_         247 LASSQGNSSYAIYER  261 (353)
T ss_dssp             EEEEGGGTEEEEEES
T ss_pred             EEEcCCCCeEEEEec
Confidence            666667888999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.15  Score=37.29  Aligned_cols=126  Identities=6%  Similarity=-0.034  Sum_probs=76.8

Q ss_pred             CCEEEeEeccCCCCceEEEEEEcCCceee-----eccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccc
Q 037555           68 GKLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEID  141 (298)
Q Consensus        68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~  141 (298)
                      |.+|+.+.      .+.|+-.+++.....     ..+..+...+..++|.+..+.+.-+ ..++.|...++....     
T Consensus         1 ~~fLl~s~------~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-----   69 (263)
T d1npea_           1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-----   69 (263)
T ss_dssp             CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-----
T ss_pred             CCEEEEeC------CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-----
Confidence            34555553      467887887643321     1133344567889999877766655 456778888876422     


Q ss_pred             eeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          142 YQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                        ....+......+..+++..-+..|+.+ ...+.|.+.++....... +  +......+..++++|..
T Consensus        70 --~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~-l--~~~~l~~p~~l~vdp~~  133 (263)
T d1npea_          70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV-L--FDTGLVNPRGIVTDPVR  133 (263)
T ss_dssp             --CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-E--ECSSCSSEEEEEEETTT
T ss_pred             --cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE-E--ecccccCCcEEEEeccc
Confidence              122222223467889998766666655 456789999987654322 1  22233567899999976

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.10  E-value=0.17  Score=39.50  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=85.1

Q ss_pred             eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC---------------eEEEEEeccCCC-------Cc-
Q 037555           83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR---------------QFSVFAIQRTGT-------GE-  139 (298)
Q Consensus        83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~-------~~-  139 (298)
                      +.+.+.|.++.+...++.. ......+.++++|+++++.+.+.               .+.+++......       .. 
T Consensus       173 ~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            5577889988887766552 23456789999999988876431               233444321000       00 


Q ss_pred             -----------cceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCccee--------eeeecCCCCCc
Q 037555          140 -----------IDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVK--------QILALPPFNSS  199 (298)
Q Consensus       140 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~--------~~~~~~~~~~~  199 (298)
                                 ........+. -......+.++|||+++++++ -+.++.++|++......        .+..-....-.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             CCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                       0011111222 223346789999999987776 58899999997432211        11111122334


Q ss_pred             eEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555          200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      ...-+|...+     ....+-.-|..|.-|++..
T Consensus       331 PLht~fd~~g-----~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRG-----NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTS-----EEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCc-----eEEEEeeccceEEEEecch
Confidence            4566777765     5555666899999999864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.03  E-value=0.16  Score=41.72  Aligned_cols=52  Identities=8%  Similarity=0.129  Sum_probs=33.0

Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |.|.-+|+.+++..-....    ..+..+-.+.-.+     .++++|+.||.++-+|.+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~----~~~~~gg~l~Tag-----glVF~G~~dg~l~A~Da~tG  489 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAG-----NLVFQGTAAGQMHAYSADKG  489 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE----SSSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             cceEEEeCCCCeEeeeccC----CCCCCCceeEECC-----CEEEEECCCCcEEEEECCCC
Confidence            4567777777776653321    1122222222233     58888999999999999998

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.89  E-value=0.35  Score=39.66  Aligned_cols=52  Identities=4%  Similarity=-0.041  Sum_probs=33.6

Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |.|.-+|+.+++..-....-    .+..+-.+.-.+     .++++|+.||.++-+|.+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~----~~~~~g~l~Tag-----glVf~G~~dg~l~A~Da~tG  495 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKG-----GLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSBCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             ccEEEeccCCCceeeEcCCC----CCCCcceeEecC-----CEEEEECCCCeEEEEECCCC
Confidence            56888888888776533221    111111112223     57888999999999999998

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.22  Score=36.40  Aligned_cols=160  Identities=7%  Similarity=-0.059  Sum_probs=96.0

Q ss_pred             CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe--CCCeEEEEEecc
Q 037555           57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS--RDRQFSVFAIQR  134 (298)
Q Consensus        57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  134 (298)
                      ..+..+++.+.+..|..+.    ...+.|.+.++........+.........++++|...+|....  ..+.|.-.++..
T Consensus        77 ~~p~glAvD~~~~~lY~~d----~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTD----SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEE----TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCcceEEEeeccceEEEEe----cCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            4567788887666666654    2467899999885544443444455678999998655555443  334555555542


Q ss_pred             CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555          135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN  213 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (298)
                      .       .........-.....+++.+.++.|+.+ ...+.|...|+....... +...........++++.. +    
T Consensus       153 s-------~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~-~~~~~~~~~~p~~lav~~-~----  219 (266)
T d1ijqa1         153 V-------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFE-D----  219 (266)
T ss_dssp             C-------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEEET-T----
T ss_pred             C-------ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE-EEeCCCcccccEEEEEEC-C----
Confidence            1       1122222223456889999988777766 456789988987544322 222222233456777774 2    


Q ss_pred             ccEEEEeecCCcEEEEEeeec
Q 037555          214 HGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       214 ~~~l~~g~~dg~i~vwd~~~~  234 (298)
                       .+..+-..++.|+..+..++
T Consensus       220 -~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         220 -KVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             -EEEEEETTTTEEEEEETTTC
T ss_pred             -EEEEEECCCCeEEEEECCCC
Confidence             35555456677777766554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.77  E-value=0.37  Score=39.43  Aligned_cols=56  Identities=13%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG  224 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg  224 (298)
                      .+.++++|+.||.++.+|.++++.+-....-.......  +.+..++.    ++|++....|
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGk----qyv~v~aG~g  523 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR----QYVAIMAGWG  523 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE----EEEEEEECCC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCE----EEEEEEeCCC
Confidence            45678889999999999999999987554322222222  45555664    6776654433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.24  Score=36.65  Aligned_cols=205  Identities=11%  Similarity=0.121  Sum_probs=120.2

Q ss_pred             EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555           61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI  140 (298)
Q Consensus        61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (298)
                      +.-.+|..+.||.-+      ...+.++|+++.+.++.+. ....|.--.|-.+. .|+-.+ +..|+-|+++...    
T Consensus        67 sAIMhP~~~IiALra------g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s----  133 (327)
T d1utca2          67 SAIMNPASKVIALKA------GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES----  133 (327)
T ss_dssp             EEEECSSSSEEEEEE------TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSC----
T ss_pred             hhhcCCCCcEEEEec------CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCC----
Confidence            344578888887764      4689999999998888877 45567777776544 444444 4579999986432    


Q ss_pred             ceeeeEEeecc----CCceEEEEEccCCCEEEEee---C----CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          141 DYQLIARQEAH----KRIIWSCSWNPFGHEFATGS---R----DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       141 ~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~---~----dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                        .+.+.+..|    ...|-.-..+++.+.++..+   .    .|.+.+|..+.....    .+++|......+.+....
T Consensus       134 --~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ----~ieGhaa~F~~~~~~g~~  207 (327)
T d1utca2         134 --QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNA  207 (327)
T ss_dssp             --CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE----EECCSEEEEEEECCTTCS
T ss_pred             --CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc----cccceeeeeEEEEcCCCC
Confidence              234444433    34677777788888776543   2    366788888765432    455554433333222111


Q ss_pred             ccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555          210 RQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG  286 (298)
Q Consensus       210 ~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  286 (298)
                        ....+++.+.   ..++++|.++.......    .+-..+....+.+...-.+-..+|..++..       ..+..-+
T Consensus       208 --~~~~lf~fa~r~~~~~kLhIiEig~~~~g~----~~f~kk~vdi~fppea~~DFPvamqvs~ky-------giiyviT  274 (327)
T d1utca2         208 --EESTLFCFAVRGQAGGKLHIIEVGTPPTGN----QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-------DVVFLIT  274 (327)
T ss_dssp             --SCEEEEEEEEEETTEEEEEEEECSCCCTTC----CCCCCEEEECCCCTTCTTCCEEEEEEETTT-------TEEEEEE
T ss_pred             --CCceEEEEEECCCCCcEEEEEEcCCCccCC----CCCcceeEEEECCccccCCcEEEEEeeccC-------CEEEEEe
Confidence              1112333332   23678888876532110    000112222222222334445678888877       6888888


Q ss_pred             CCCcEEEeEec
Q 037555          287 ADNTVRVFQVN  297 (298)
Q Consensus       287 ~d~~i~iw~~~  297 (298)
                      .-|.|++||+.
T Consensus       275 K~G~i~lyDle  285 (327)
T d1utca2         275 KYGYIHLYDLE  285 (327)
T ss_dssp             TTSEEEEEETT
T ss_pred             cCcEEEEEEcc
Confidence            88999999975

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.70  E-value=0.093  Score=40.49  Aligned_cols=122  Identities=12%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCC------CceEEEEEEcCCceeeec--c-ccccccEEEEEEcCCCCEEEEEeCC-CeE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQST------AAAEIWLWEVGSWKAMGR--L-QSHSLTVTQIRFSHDDNLLLSVSRD-RQF  127 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~------~d~~i~vw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i  127 (298)
                      ++.......+|+.++.|+.....      .-..+.+||..+++-...  . ..+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            34444456688988888753211      112478999987754322  1 2233334566788999999988765 589


Q ss_pred             EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCc
Q 037555          128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKS  185 (298)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~  185 (298)
                      .+||..+..     +........ ...-...+..++++.++.++.+      ..+.+||..+.+
T Consensus       101 ~~yd~~~~~-----w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         101 SLYDSSSDS-----WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEGGGTE-----EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEecCccCc-----ccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            999988643     222222221 2223456677789988888753      358899987653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.43  E-value=0.39  Score=39.38  Aligned_cols=20  Identities=10%  Similarity=0.233  Sum_probs=18.5

Q ss_pred             cEEEEeecCCcEEEEEeeec
Q 037555          215 GFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       215 ~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .++++|+.||.++.+|.+++
T Consensus       489 glVF~G~~dg~l~A~Da~TG  508 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATG  508 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEECCCCeEEEEECCCC
Confidence            68888999999999999998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.10  E-value=0.47  Score=38.99  Aligned_cols=76  Identities=8%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeee
Q 037555          173 DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIR  252 (298)
Q Consensus       173 dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  252 (298)
                      .|.|.-+|+.+++..-....    ..++.+-.+...+     .++++|+.||.++-+|.+++             +.+..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~----~~p~~~g~lstag-----glVF~Gt~dg~l~A~Da~TG-------------e~LW~  522 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE----HLPLWAGVLATAG-----NLVFTGTGDGYFKAFDAKSG-------------KELWK  522 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE----SSCCCSCCEEETT-----TEEEEECTTSEEEEEETTTC-------------CEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCC----CCCCccceeEEcC-----CeEEEeCCCCeEEEEECCCC-------------cEeEE
Confidence            36788888888887664322    1222222223334     68888999999999999999             66655


Q ss_pred             eccCC-cccceEEEEEeecCCC
Q 037555          253 FDPFA-CHVAAVNRMAWKTHEK  273 (298)
Q Consensus       253 ~~~~~-~~~~~v~~~~~~~~~~  273 (298)
                      +..-. .+..+   |.+..+++
T Consensus       523 ~~~~~~~~~~P---~ty~~~G~  541 (582)
T d1flga_         523 FQTGSGIVSPP---ITWEQDGE  541 (582)
T ss_dssp             EECSSCCCSCC---EEEEETTE
T ss_pred             EECCCCccccC---EEEEECCE
Confidence            54222 22333   45667773

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.28  E-value=0.6  Score=35.63  Aligned_cols=74  Identities=11%  Similarity=0.081  Sum_probs=45.5

Q ss_pred             EEEEEccCCCEEEEeeCC-----C------eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC-
Q 037555          156 WSCSWNPFGHEFATGSRD-----K------TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES-  223 (298)
Q Consensus       156 ~~~~~~~~~~~l~~~~~d-----g------~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-  223 (298)
                      .......+++.++.|+.+     +      .+.+||..+..-.........+.......++.+++     .+++.|+.+ 
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~i~v~Gg~~~   97 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVTGGNDA   97 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEECSSST
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-----cEEEeecCCC
Confidence            334444577777777742     1      36789998765432111112233334566788887     677777654 


Q ss_pred             CcEEEEEeeec
Q 037555          224 GVIELWSISVN  234 (298)
Q Consensus       224 g~i~vwd~~~~  234 (298)
                      ..+.+||..+.
T Consensus        98 ~~~~~yd~~~~  108 (387)
T d1k3ia3          98 KKTSLYDSSSD  108 (387)
T ss_dssp             TCEEEEEGGGT
T ss_pred             cceeEecCccC
Confidence            58999998765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.02  E-value=1.1  Score=35.42  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=41.9

Q ss_pred             eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--ecc------ccccccEEEEEEcCC
Q 037555           49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRL------QSHSLTVTQIRFSHD  114 (298)
Q Consensus        49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~------~~~~~~v~~~~~~~~  114 (298)
                      +..+...-...++|+|.|+|++|++-     ...|.|++++..+++..  ..+      ..-......++|+|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVte-----r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTE-----RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEE-----ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34444444677899999999999887     23689999987766432  111      122457889999994

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.01  E-value=0.88  Score=34.40  Aligned_cols=161  Identities=9%  Similarity=0.039  Sum_probs=85.0

Q ss_pred             EEEEEEcCCCCEEEEEeC------------CCeEEEEEeccCCCCccceeeeEEeecc----CCceEEEEE--ccCCC-E
Q 037555          106 VTQIRFSHDDNLLLSVSR------------DRQFSVFAIQRTGTGEIDYQLIARQEAH----KRIIWSCSW--NPFGH-E  166 (298)
Q Consensus       106 v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~--~~~~~-~  166 (298)
                      ..+++..|+|..+++++.            .|.|.++|+........   .+......    .-....+..  .+++. +
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~---~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS---ELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE---ECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce---EEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            346777788776666542            48899999876443211   11111110    011233433  33454 3


Q ss_pred             EEEee---CCCeEEEEEccCCcc-eeeeeecC-CCCCceEEEEEeeccccCCccEEEEeec---------------CCcE
Q 037555          167 FATGS---RDKTVKIWAVENKSS-VKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGME---------------SGVI  226 (298)
Q Consensus       167 l~~~~---~dg~i~~wd~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~---------------dg~i  226 (298)
                      |++..   ...+|.+|++..... +.....+. ........+++..++     .+++|-..               -+..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-----~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-----HFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-----EEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-----CEEEecCccCcChhhhhhhHhhcCCce
Confidence            44443   346788888764432 22222222 223457888888887     67776210               1233


Q ss_pred             EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555          227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN  297 (298)
Q Consensus       227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~  297 (298)
                      .+|.....             .. ..+.   ..-...+.|+++|+++      .++++-...++|+.|+++
T Consensus       189 ~v~~~~~~-------------~~-~~~~---~~l~~pNGI~~s~d~~------~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         189 FVTYYSPN-------------DV-RVVA---EGFDFANGINISPDGK------YVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEEECSS-------------CE-EEEE---EEESSEEEEEECTTSS------EEEEEEGGGTEEEEEEEC
T ss_pred             eEEEEcCC-------------ce-EEEc---CCCCccceeEECCCCC------EEEEEeCCCCeEEEEEeC
Confidence            44444332             11 1111   1234568899999983      556666778889988864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.95  E-value=0.92  Score=34.42  Aligned_cols=150  Identities=9%  Similarity=0.075  Sum_probs=89.5

Q ss_pred             eEEEEEEcCC-ceeeecccc-------ccccEEEEEE--cCC-CC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555           83 AEIWLWEVGS-WKAMGRLQS-------HSLTVTQIRF--SHD-DN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA  150 (298)
Q Consensus        83 ~~i~vw~~~~-~~~~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..|.+|.+.. ...+..+..       ....+..+++  ++. +. ++++...+|.+..|.+............++.+. 
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence            4688887752 222222221       1123566666  664 44 566677799999998865544433355566654 


Q ss_pred             cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC--cceeeeeecC--CCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555          151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK--SSVKQILALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVI  226 (298)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i  226 (298)
                      -...+..|.+.+....|+.+-.+.-|..++....  .....+....  .....+..|+.-... ...+.+|++.-.+.+.
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~-~~~GylivSsQG~n~f  256 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA-DGKGYLLASSQGNSSY  256 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG-GGCEEEEEEEGGGTEE
T ss_pred             CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC-CCCeEEEEEcCCCCeE
Confidence            3567899999999899999988876766665421  1111111211  234677888876543 1122444444467889


Q ss_pred             EEEEeeec
Q 037555          227 ELWSISVN  234 (298)
Q Consensus       227 ~vwd~~~~  234 (298)
                      .|||....
T Consensus       257 ~vydr~~~  264 (353)
T d1h6la_         257 AIYERQGQ  264 (353)
T ss_dssp             EEEESSTT
T ss_pred             EEEecCCC
Confidence            99998753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.55  E-value=1.3  Score=34.66  Aligned_cols=112  Identities=11%  Similarity=0.082  Sum_probs=69.7

Q ss_pred             CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC----------
Q 037555           55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----------  124 (298)
Q Consensus        55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  124 (298)
                      +.-.+..+++||+++++|.+-...+.+...|+++|+.+++.+...- .......++|.+|++.|+-...+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            4444567788999999997765555667899999999998764211 11122568899999877654332          


Q ss_pred             ------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe
Q 037555          125 ------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG  170 (298)
Q Consensus       125 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (298)
                            ..+..+.+.+....   -..+.........+..+..++++++++..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~---d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cccCCcceEEEEECCCCccc---cccccccccCCceEEeeeccCCcceeeEE
Confidence                  25666766553321   11222222223346677788898887643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.75  E-value=1.8  Score=34.13  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=39.3

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC------CCCCceEEEEEeecc
Q 037555          153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP------PFNSSVTALSWVGLD  209 (298)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~  209 (298)
                      ..-++|+|.|++++|++--..|+|++++..++.... +..+.      ..+.....|+++|+-
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~-i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee-cccCCccccccCCCCceeeEEeCCCC
Confidence            456799999999988776567999999877655322 22221      223567899999964

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=1.7  Score=33.30  Aligned_cols=139  Identities=9%  Similarity=0.004  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---------eeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---------AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS  128 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (298)
                      ...-++.++...++++|+.     + .+.|..+..-+         .....+..-..|..++|+.+  .++.. .++.+.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~-----~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~  108 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASG-----S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALY  108 (381)
T ss_dssp             CCBCEEEETTTTEEEEEET-----T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEE
T ss_pred             ccceEEEeCCCCEEEEECC-----C-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEE
Confidence            4567788887778887753     4 46677653210         00111112235888999754  44444 456677


Q ss_pred             EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee---ecCCCCCceEEEEE
Q 037555          129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL---ALPPFNSSVTALSW  205 (298)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~v~~~~~  205 (298)
                      .++.....       ..........++..+.++|.  .++....+|.+.++++...+......   .+ .....+.+++|
T Consensus       109 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~w  178 (381)
T d1xipa_         109 SLDLEELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLL  178 (381)
T ss_dssp             EEESSSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEE
T ss_pred             EEEeeccc-------cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEE
Confidence            77776532       12222333566788888764  56677778999999998875432110   01 12244666677


Q ss_pred             eeccccCCccEEEEe
Q 037555          206 VGLDRQKNHGFLAVG  220 (298)
Q Consensus       206 ~~~~~~~~~~~l~~g  220 (298)
                      ++.+     ..++++
T Consensus       179 s~kg-----kq~v~~  188 (381)
T d1xipa_         179 KDRS-----FQSFAW  188 (381)
T ss_dssp             TTSC-----EEEEEE
T ss_pred             eCCc-----EEEEEe
Confidence            6665     455555

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.75  E-value=2.8  Score=34.14  Aligned_cols=54  Identities=9%  Similarity=0.119  Sum_probs=36.1

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      .+.++++|+.||.++.+|.++++.+.....-.+.....  +.|..++.    +|++....
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~Gk----QYv~v~~G  540 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGR----QYVSVAVG  540 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE----EEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE----EEEEEEeC
Confidence            46788889999999999999999987554322222222  44555664    56665543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.12  E-value=2.3  Score=32.00  Aligned_cols=165  Identities=13%  Similarity=0.002  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCEEEeEeccC-------CCCceEEEEEEcCCceeee-cc--cc-----ccccEEEEEE--cCCCC-EEEE
Q 037555           59 LFSLCCDHQGKLVASSCKAQ-------STAAAEIWLWEVGSWKAMG-RL--QS-----HSLTVTQIRF--SHDDN-LLLS  120 (298)
Q Consensus        59 v~~~~~s~~~~~l~~~~~~~-------~~~d~~i~vw~~~~~~~~~-~~--~~-----~~~~v~~~~~--~~~~~-~l~~  120 (298)
                      .-.|...|+|..+++++...       ....|.|.++|+.+.+... .+  .+     ..-....+.+  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            44677788887777664210       0225899999987643211 11  11     1112233333  44565 3444


Q ss_pred             Ee---CCCeEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEeeC---------------CCeEEEEEc
Q 037555          121 VS---RDRQFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSR---------------DKTVKIWAV  181 (298)
Q Consensus       121 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~~wd~  181 (298)
                      ..   ...+|-+|++......   ...+..+.. .....+.+.+..++.+++|-..               -+...+|..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~---l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKS---LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTE---EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EeccCCCceeEEEEEeCCCCe---EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            43   3567889988754321   222222221 2245688888888888877321               122334444


Q ss_pred             cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      .......   ... .-...+.++++|++.    .++++-+..+.|++|++...
T Consensus       194 ~~~~~~~---~~~-~l~~pNGI~~s~d~~----~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         194 SPNDVRV---VAE-GFDFANGINISPDGK----YVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CSSCEEE---EEE-EESSEEEEEECTTSS----EEEEEEGGGTEEEEEEECTT
T ss_pred             cCCceEE---EcC-CCCccceeEECCCCC----EEEEEeCCCCeEEEEEeCCC
Confidence            3333222   111 234578999999883    45555667889999998743

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.82  E-value=1.8  Score=35.36  Aligned_cols=53  Identities=17%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      .+.++++|+.||.++.+|.++++.+-....-.......  +.+..++.    +|++...
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~----qYv~i~a  548 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE----QYLGVTV  548 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE----EEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE----EEEEEEe
Confidence            46788889999999999999999988554322222222  56666774    6766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.64  E-value=4.5  Score=33.03  Aligned_cols=52  Identities=8%  Similarity=0.030  Sum_probs=34.6

Q ss_pred             CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555          174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN  234 (298)
Q Consensus       174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  234 (298)
                      |.|.-||+.+++..-....    ..+..+-.++-.+     .+++.|+.||.++-+|.+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~----~~~~~gg~lsTag-----glVF~G~~Dg~l~A~Da~TG  504 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME----RFAVWGGTMATAG-----DLVFYGTLDGYLKARDSDTG  504 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCSBCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred             ceEEEEeCCCCceecccCC----CCCCccceeEecC-----CEEEEECCCCeEEEEECCCC
Confidence            5788888888877653321    1222222222333     57888999999999999998

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.58  E-value=3.4  Score=31.56  Aligned_cols=137  Identities=11%  Similarity=0.127  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555           58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT  137 (298)
Q Consensus        58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (298)
                      .|..++|+.+  .|+...      ++.+..++............-..++..+.+.|.  .++....++.+.++++.....
T Consensus        88 ~v~~vafs~d--~l~v~~------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~  157 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST------RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST  157 (381)
T ss_dssp             TEEEEEEETT--EEEEEE------SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred             CeEEEEeeCC--EEEEEe------CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc
Confidence            5888999755  455542      456888887654333333334556788888764  577777889999999887432


Q ss_pred             CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555          138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD  209 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (298)
                      ... ..-+..+. -.+.+.+++|++.+..++++..++.-.--++.....+.   ........+.++.|....
T Consensus       158 ~~~-~~~v~~~~-~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~---~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         158 KQL-AQNVTSFD-VTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE---ELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEE-EESEEEEE-ECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHH---TSCTTTSEEEEEEESSSS
T ss_pred             ccc-cCCcceEE-ecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccC---CCcCCCcceeEEEEecCc
Confidence            111 00011111 23567888888888777776433211111222221111   111234567889998765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.32  E-value=3  Score=30.65  Aligned_cols=213  Identities=7%  Similarity=0.038  Sum_probs=117.0

Q ss_pred             cceeeeecCcccccccCCCCCceeeeccCCCcccccccC---CC------CceEEeccCC----CceEEEEEcCCCCEEE
Q 037555            6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT---LW------PESHKLYGHG----NELFSLCCDHQGKLVA   72 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~------~~~~~~~~h~----~~v~~~~~s~~~~~l~   72 (298)
                      ++.|+.++...+....-..+.|.--..+ +..--+++.+   -|      .+.+.+.-|.    ..|..-..+++.+.++
T Consensus        85 LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~  163 (327)
T d1utca2          85 LQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL  163 (327)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEE
T ss_pred             EEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEE
Confidence            4555555555555555555444333333 2222222221   12      2345554444    3466777788888776


Q ss_pred             eEeccC--CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEEEEEe---CCCeEEEEEeccCCCC-cc-ce
Q 037555           73 SSCKAQ--STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLLLSVS---RDRQFSVFAIQRTGTG-EI-DY  142 (298)
Q Consensus        73 ~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~dg~i~iwd~~~~~~~-~~-~~  142 (298)
                      ..+-..  ..-.|.+.+|..+.. .-+.+.+|......+.+.-+.   ++++-+.   ..+.+++.++.....+ .. ..
T Consensus       164 l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k  242 (327)
T d1utca2         164 LTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK  242 (327)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC
T ss_pred             EEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc
Confidence            654321  123578899998754 445677887766665554222   1333322   2368999998874432 11 11


Q ss_pred             eeeEEeec---cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555          143 QLIARQEA---HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV  219 (298)
Q Consensus       143 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  219 (298)
                      +....+.+   ..+--.++..++....++..+.-|.|++||+.++.++..- .+  ....|...+-....     .=+++
T Consensus       243 k~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n-RI--s~~~iF~~a~~~~~-----~Gi~~  314 (327)
T d1utca2         243 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN-RI--SGETIFVTAPHEAT-----AGIIG  314 (327)
T ss_dssp             EEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEEETTT-----TEEEE
T ss_pred             eeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe-ec--CCCceEEeccCCCC-----ceEEE
Confidence            11111111   2344567888888889999999999999999999987633 22  34455433333332     22444


Q ss_pred             eecCCcEEE
Q 037555          220 GMESGVIEL  228 (298)
Q Consensus       220 g~~dg~i~v  228 (298)
                      -..+|.|..
T Consensus       315 VNr~GqVl~  323 (327)
T d1utca2         315 VNRKGQVLS  323 (327)
T ss_dssp             EETTSEEEE
T ss_pred             ECCCCeEEE
Confidence            446666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.75  E-value=4.5  Score=32.84  Aligned_cols=54  Identities=6%  Similarity=-0.072  Sum_probs=35.9

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME  222 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~  222 (298)
                      .+.++++++.||.++.+|.++++.+-+...-....  -.-+.|..++.    +|+++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~--a~P~ty~~dGk----qYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI--GSPMTYSFKGK----QYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTE----EEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce--ecceEEEECCE----EEEEEEec
Confidence            35678889999999999999999987553221111  12255556664    67766543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.39  E-value=5.6  Score=29.49  Aligned_cols=113  Identities=9%  Similarity=0.040  Sum_probs=69.2

Q ss_pred             CCCEEEEEeCCCeEEEEEeccCCCCccc-eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee----
Q 037555          114 DDNLLLSVSRDRQFSVFAIQRTGTGEID-YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK----  188 (298)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----  188 (298)
                      ...+|+..+..|.++...+..-...... ......+. ....+..+........++.++..|.+..++...-....    
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~  183 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA  183 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEEEEEecceeeEeecccccccCcccc
Confidence            3568999999999999998653221100 11122232 34566677777667788888999999999876533221    


Q ss_pred             ee--eecCCCCCceEEEEEe-eccccCCccEEEEeecCCcEEEEEeee
Q 037555          189 QI--LALPPFNSSVTALSWV-GLDRQKNHGFLAVGMESGVIELWSISV  233 (298)
Q Consensus       189 ~~--~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~  233 (298)
                      -+  ..+. ....+.++... +.+     ..+++.+..|..+.-.+..
T Consensus       184 GV~~ikL~-~~D~vv~~~~~~~~~-----~~ll~~T~~G~gKr~~~~e  225 (323)
T d1wp5a_         184 GVKGMNLK-EGDYIVSGQLITSKD-----ESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             CEECCCCC-TTCCEEEEEEECCTT-----CEEEEEETTSEEEEEEGGG
T ss_pred             cccccccc-cccccchhhhccccc-----cceeeeeeeheeecccchh
Confidence            00  1222 23344444443 333     5788888889888776654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.61  E-value=4.1  Score=33.26  Aligned_cols=53  Identities=9%  Similarity=0.035  Sum_probs=35.9

Q ss_pred             CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555          163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM  221 (298)
Q Consensus       163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~  221 (298)
                      .+.+++.|+.||.++.+|.++++.+-+...-.......  +.|..++.    +|++...
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGk----QYvav~~  535 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGT----QYVAIYY  535 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE----EEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCE----EEEEEEe
Confidence            46678889999999999999999987654322222222  44555664    6776543