Citrus Sinensis ID: 037558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MGSPTLSTVVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLEA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEccccHHHHcccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEcccHHccccccccEEEEcccccEEcccccccccccccEEEEccEEEEcccHHHHccccccEEEccccEEEccccccHHccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mgsptlstvvPSLVLLILFFVSSFLitvssepneEADTLLKWKASLQsrnqsrlpswtkattnvsskispcawygiscndaGRVINISlrntglsgtlhgfsfssfprlayldltgsglfgtippevgllSHLKFLFidtnkldgsippevgqlsSMEVFFLCsnylngsvppslgnlshislLFIYdnlfsgfipsdignsksifnldlssnqfsgpiplffgnlsnlkSLYLYGnslsspilsslgkfKSLIDLQlnenqftgyiprsfgnltslSTLRLsknelfgsipdeigkmrslsvldlnenqfkgvlppsisnltNLKELALLYNHlsgsippslGNLILRELLLSgnhfagylpynicqggaLEIFTVsenhfqgtiptsvrnCTSLIRVHLngnnltgniSEALaiypnltfidlsrnnfygeissnwgkcpkldtlnvsmnnitggipreignssqlQALDLSLNHIVgeipkelgklnsLTKLILRGNQRAVTLSFINKVCSSLEA
Flexible Loop (DISEMBL)
mgsptlstVVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLqsrnqsrlpswtkattnvsskispcaWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLIlrgnqravtLSFINKVCSSLEA
Low Complexity Region (SEG)
MGsptlstvvpslvllilffvssfliTVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLEA
Disordered region (IsUnstruct)
*******TVVPSLVLLILFFVSSFLITVS**********L*W*****************ATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC*****
Disordered Region (DISOPRED)
**********PSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE*
Disordered Region (DISEMBL)
********VVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLEA
Disordered Region (DISPRO)
**SPTLSTVVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKA******KISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSPTLSTVVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.928	0.460	0.427	1e-105
Q9LP24	1120	Probable leucine-rich rep	no	no	0.752	0.348	0.488	1e-92
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.930	0.437	0.333	6e-69
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.945	0.476	0.322	4e-65
C0LGV1	1135	LRR receptor-like serine/	no	no	0.934	0.426	0.318	3e-64
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.849	0.352	0.360	5e-64
O49318	1124	Probable leucine-rich rep	no	no	0.752	0.346	0.366	2e-63
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.936	0.440	0.333	4e-63
P93194	1109	Receptor-like protein kin	N/A	no	0.758	0.354	0.369	7e-63
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.851	0.392	0.315	3e-62

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 311/515 (60%), Gaps = 34/515 (6%)

Query: 14  VLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSR-NQSRLPSWTKATTNVSSKISPC- 71
           VLLI+  V S    VS+   EEA+ LLKWK++  ++ + S+L SW    T+     S C 
Sbjct: 30  VLLIISIVLSCSFAVSATV-EEANALLKWKSTFTNQTSSSKLSSWVNPNTS-----SFCT 83

Query: 72  AWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLS 131
           +WYG++C+  G +I ++L NTG+ GT   F FSS P L ++DL+ +   GTI P  G  S
Sbjct: 84  SWYGVACS-LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFS 142

Query: 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLF 191
            L++  +  N+L G IPPE+G LS+++   L  N LNGS+P  +G L+ ++ + IYDNL 
Sbjct: 143 KLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLL 202

Query: 192 SGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251
           +G IPS  GN   + NL L  N  SG IP   GNL NL+ L L  N+L+  I SS G  K
Sbjct: 203 TGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLK 262

Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
           ++  L + ENQ +G IP   GN+T+L TL L  N+L G IP  +G +++L+VL L  NQ 
Sbjct: 263 NVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQL 322

Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN------LILRELLLSG---------- 355
            G +PP +  + ++ +L +  N L+G +P S G       L LR+  LSG          
Sbjct: 323 NGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANST 382

Query: 356 ---------NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
                    N+F G+LP  IC+GG LE  T+ +NHF+G +P S+R+C SLIRV   GN+ 
Sbjct: 383 ELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSF 442

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466
           +G+ISEA  +YP L FIDLS NNF+G++S+NW +  KL    +S N+ITG IP EI N +
Sbjct: 443 SGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMT 502

Query: 467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           QL  LDLS N I GE+P+ +  +N ++KL L GN+
Sbjct: 503 QLSQLDLSSNRITGELPESISNINRISKLQLNGNR 537

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  340 bits (873), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/391 (48%), Positives = 254/391 (64%), Gaps = 1/391 (0%)

Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
           L L+ + L G+IP  +G L +L  L++  N L G IPPE+G + SM    L  N L GS+
Sbjct: 227 LALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSI 286

Query: 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKS 231
           P SLGNL +++LL ++ N  +G IP  +GN +S+ +L+LS+N+ +G IP   GNL NL  
Sbjct: 287 PSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI 346

Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
           LYLY N L+  I   LG  +S+IDLQLN N+ TG IP SFGNL +L+ L L  N L G I
Sbjct: 347 LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query: 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRE 350
           P E+G M S+  LDL++N+  G +P S  N T L+ L L  NHLSG+IPP + N   L  
Sbjct: 407 PQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTT 466

Query: 351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI 410
           L+L  N+F G+ P  +C+G  L+  ++  NH +G IP S+R+C SLIR    GN  TG+I
Sbjct: 467 LILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDI 526

Query: 411 SEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA 470
            EA  IYP+L FID S N F+GEISSNW K PKL  L +S NNITG IP EI N +QL  
Sbjct: 527 FEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVE 586

Query: 471 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           LDLS N++ GE+P+ +G L +L++L L GNQ
Sbjct: 587 LDLSTNNLFGELPEAIGNLTNLSRLRLNGNQ 617

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  262 bits (669), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 187/561 (33%), Positives = 265/561 (47%), Gaps = 79/561 (14%)

Query: 13  LVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCA 72
           +  L +  + SF   +    NEE   LL++KA L   N   L SW +  +N      PC 
Sbjct: 5   ICFLAIVILCSFSFILVRSLNEEGRVLLEFKAFLNDSN-GYLASWNQLDSN------PCN 57

Query: 73  WYGISCNDAGRVINISLRNTGLSGTL-------HGF-------SFSSFP---------RL 109
           W GI+C     V ++ L    LSGTL       HG        +F S P          L
Sbjct: 58  WTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSL 117

Query: 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNG 169
             LDL  +   G IP ++ ++  LK L++  N L GSIP ++G LSS++   + SN L G
Sbjct: 118 EVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTG 177

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
            +PPS+  L  + ++    N FSG IPS+I   +S+  L L+ N   G +P     L NL
Sbjct: 178 VIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNL 237

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
             L L+ N LS  I  S+G    L  L L+EN FTG IPR  G LT +  L L  N+L G
Sbjct: 238 TDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTG 297

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILR 349
            IP EIG +   + +D +ENQ  G +P    ++ NLK L L  N L G IP  LG L L 
Sbjct: 298 EIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLL 357

Query: 350 ELL-------------------------------------------------LSGNHFAG 360
           E L                                                 +S N  +G
Sbjct: 358 EKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSG 417

Query: 361 YLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNL 420
            +P + C+   L + ++  N   G IP  ++ C SL ++ L  N LTG++   L    NL
Sbjct: 418 PIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNL 477

Query: 421 TFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG 480
           T ++L +N   G IS++ GK   L+ L ++ NN TG IP EIGN +++   ++S N + G
Sbjct: 478 TALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTG 537

Query: 481 EIPKELGKLNSLTKLILRGNQ 501
            IPKELG   ++ +L L GN+
Sbjct: 538 HIPKELGSCVTIQRLDLSGNK 558

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  249 bits (636), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 273/567 (48%), Gaps = 77/567 (13%)

Query: 9   VVPSLVLLILFFVSSFLITVSSE--PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVS- 65
            +P L  L  +   +    VSSE   N E + LL +K+ L   + + L  W +     + 
Sbjct: 2   AIPRLFFLFYYIGFALFPFVSSETFQNSEQEILLAFKSDLFDPSNN-LQDWKRPENATTF 60

Query: 66  SKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGL------ 119
           S++  C W G+ C+  G V  + L N  LSG +      SFP L  LDL+ +        
Sbjct: 61  SELVHCHWTGVHCDANGYVAKLLLSNMNLSGNVSD-QIQSFPSLQALDLSNNAFESSLPK 119

Query: 120 ------------------FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
                             FGT P  +G+ + L  +   +N   G +P ++G  +++EV  
Sbjct: 120 SLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLD 179

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
               Y  GSVP S  NL ++  L +  N F G +P  IG   S+  + L  N F G IP 
Sbjct: 180 FRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPE 239

Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
            FG L+ L+ L L   +L+  I SSLG+ K L  + L +N+ TG +PR  G +TSL  L 
Sbjct: 240 EFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLD 299

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
           LS N++ G IP E+G++++L +L+L  NQ  G++P  I+ L NL+ L L  N L GS+P 
Sbjct: 300 LSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPV 359

Query: 342 SLG-NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV- 399
            LG N  L+ L +S N  +G +P  +C    L    +  N F G IP  + +C +L+RV 
Sbjct: 360 HLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVR 419

Query: 400 ----HLNG-------------------NNLTGNISEALAIYPNLTFIDL----------- 425
               H++G                   NNLTG I + +A+  +L+FID+           
Sbjct: 420 IQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSS 479

Query: 426 ------------SRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL 473
                       S NNF G+I +     P L  L++S N+ +GGIP  I +  +L +L+L
Sbjct: 480 IFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNL 539

Query: 474 SLNHIVGEIPKELGKLNSLTKLILRGN 500
             N +VGEIPK L  ++ L  L L  N
Sbjct: 540 KSNQLVGEIPKALAGMHMLAVLDLSNN 566

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 273/572 (47%), Gaps = 88/572 (15%)

Query: 5   TLSTVVPSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNV 64
           T+S    +L L + FF+SS     +S    E   L+ W  S  S   S    W  + ++ 
Sbjct: 14  TVSHFSITLSLFLAFFISS-----TSASTNEVSALISWLHSSNSPPPSVFSGWNPSDSD- 67

Query: 65  SSKISPCAWYGISCNDAG-------RVINISLR-------------------NTGLSGTL 98
                PC W  I+C+ +         V+++ L                    NT L+G +
Sbjct: 68  -----PCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAI 122

Query: 99  HGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSME 158
                     L  +DL+ + L G IP  +G L +L+ L +++N L G IPPE+G   S++
Sbjct: 123 SS-EIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLK 181

Query: 159 VFFLCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGFIPSDIGNSKSIFNLDLSSNQFSG 217
              +  NYL+ ++P  LG +S +  +    N   SG IP +IGN +++  L L++ + SG
Sbjct: 182 NLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISG 241

Query: 218 PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSL 277
            +P+  G LS L+SL +Y   LS  I   LG    LI+L L +N  +G +P+  G L +L
Sbjct: 242 SLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNL 301

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG 337
             + L +N L G IP+EIG M+SL+ +DL+ N F G +P S  NL+NL+EL L  N+++G
Sbjct: 302 EKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITG 361

Query: 338 SIPPSLGNLI-------------------------------------------------L 348
           SIP  L N                                                   L
Sbjct: 362 SIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNL 421

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
           + L LS N+  G LP  + Q   L    +  N   G IP  + NCTSL+R+ L  N +TG
Sbjct: 422 QALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITG 481

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
            I + +    NL+F+DLS NN  G +      C +L  LN+S N + G +P  + + ++L
Sbjct: 482 EIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKL 541

Query: 469 QALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
           Q LD+S N + G+IP  LG L SL +LIL  N
Sbjct: 542 QVLDVSSNDLTGKIPDSLGHLISLNRLILSKN 573

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  245 bits (626), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 248/497 (49%), Gaps = 57/497 (11%)

Query: 33  NEEADTLLKWKASLQSRNQSRLP--SWTKATTNVSSKISPCAWYGISCNDAGRVINISLR 90
           N +  TLL+ K SL +  Q   P   W       S  I+ C+W G++C+           
Sbjct: 24  NNDLQTLLEVKKSLVTNPQEDDPLRQWN------SDNINYCSWTGVTCD----------- 66

Query: 91  NTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPE 150
           NTGL             R+  L+LTG GL G+I P  G   +L  L + +N L G IP  
Sbjct: 67  NTGLF------------RVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTA 114

Query: 151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210
           +  L+S+E  FL SN L G +P  LG+L +I  L I DN   G IP  +GN  ++  L L
Sbjct: 115 LSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLAL 174

Query: 211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRS 270
           +S + +GPIP   G L  ++SL L  N L  PI + LG    L      EN   G IP  
Sbjct: 175 ASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAE 234

Query: 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELAL 330
            G L +L  L L+ N L G IP ++G+M  L  L L  NQ +G++P S+++L NL+ L L
Sbjct: 235 LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDL 294

Query: 331 LYNHLSGSIPPSLGNL-ILRELLLSGNHFAGYLPYNICQGGA-LEIFTVSENHFQGTIPT 388
             N+L+G IP    N+  L +L+L+ NH +G LP +IC     LE   +S     G IP 
Sbjct: 295 SANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPV 354

Query: 389 SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISS--------NW-- 438
            +  C SL ++ L+ N+L G+I EAL     LT + L  N   G +S          W  
Sbjct: 355 ELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLV 414

Query: 439 -------GKCP-------KLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK 484
                  GK P       KL+ L +  N  +G IP+EIGN + L+ +D+  NH  GEIP 
Sbjct: 415 LYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPP 474

Query: 485 ELGKLNSLTKLILRGNQ 501
            +G+L  L  L LR N+
Sbjct: 475 SIGRLKELNLLHLRQNE 491

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 218/415 (52%), Gaps = 25/415 (6%)

Query: 119 LFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL 178
           L G +P  +G L+ L       N   G+IP E+G+  ++++  L  N+++G +P  +G L
Sbjct: 193 LTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGML 252

Query: 179 SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS 238
             +  + ++ N FSGFIP DIGN  S+  L L  N   GPIP   GN+ +LK LYLY N 
Sbjct: 253 VKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQ 312

Query: 239 LSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKM 298
           L+  I   LGK   ++++  +EN  +G IP     ++ L  L L +N+L G IP+E+ K+
Sbjct: 313 LNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKL 372

Query: 299 RSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNH 357
           R+L+ LDL+ N   G +PP   NLT++++L L +N LSG IP  LG    L  +  S N 
Sbjct: 373 RNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQ 432

Query: 358 FAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY 417
            +G +P  ICQ   L +  +  N   G IP  V  C SL+++ + GN LTG     L   
Sbjct: 433 LSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKL 492

Query: 418 PNLTFIDLSRNNFYGEISSNWGKCPKLD------------------------TLNVSMNN 453
            NL+ I+L +N F G +    G C KL                         T NVS N+
Sbjct: 493 VNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNS 552

Query: 454 ITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSF 508
           +TG IP EI N   LQ LDLS N  +G +P ELG L+ L  L L  N+ +  + F
Sbjct: 553 LTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPF 607

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 268/548 (48%), Gaps = 63/548 (11%)

Query: 9   VVPSLVLLILFFVSSFLITVSSEP---NEEADTLLKWKASLQSRNQSRLPSWTKATTNVS 65
           +V  ++ L +FF+S  LI + SE    N E   LL+ K+      Q+ L +W       S
Sbjct: 1   MVKEMMKLAVFFISLLLILLISETTGLNLEGQYLLEIKSKFVDAKQN-LRNWN------S 53

Query: 66  SKISPCAWYGISCNDAG---RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGT 122
           +   PC W G+ C++      V++++L +  LSG L   S      L  LDL+ +GL G 
Sbjct: 54  NDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSP-SIGGLVHLKQLDLSYNGLSGK 112

Query: 123 IPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS 182
           IP E+G  S L+ L ++ N+ DG IP E+G+L S+E   + +N ++GS+P  +GNL  +S
Sbjct: 113 IPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLS 172

Query: 183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP 242
            L  Y N  SG +P  IGN K + +     N  SG +P   G   +L  L L  N LS  
Sbjct: 173 QLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGE 232

Query: 243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLS 302
           +   +G  K L  + L EN+F+G+IPR   N TSL TL L KN+L G IP E+G ++SL 
Sbjct: 233 LPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLE 292

Query: 303 VLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELL------LSG- 355
            L L  N   G +P  I NL+   E+    N L+G IP  LGN+   ELL      L+G 
Sbjct: 293 FLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGT 352

Query: 356 ------------------------------------------NHFAGYLPYNICQGGALE 373
                                                     N  +G +P  +     L 
Sbjct: 353 IPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLW 412

Query: 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE 433
           +  +S+NH  G IP+ +   +++I ++L  NNL+GNI   +     L  + L+RNN  G 
Sbjct: 413 VLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGR 472

Query: 434 ISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLT 493
             SN  K   +  + +  N   G IPRE+GN S LQ L L+ N   GE+P+E+G L+ L 
Sbjct: 473 FPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLG 532

Query: 494 KLILRGNQ 501
            L +  N+
Sbjct: 533 TLNISSNK 540

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  241 bits (616), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 155/419 (36%), Positives = 227/419 (54%), Gaps = 26/419 (6%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
           S  S P L  +  TG+GL G+IP  +G +S L  L++D N+  G +P  +G +++++  +
Sbjct: 159 SLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELY 218

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF------ 215
           L  N L G++P +L NL ++  L + +N   G IP D  + K I  + LS+NQF      
Sbjct: 219 LNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPP 278

Query: 216 ------------------SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ 257
                             SGPIP  FG L+ L +LYL GN  S  I   LGK KS+IDLQ
Sbjct: 279 GLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQ 338

Query: 258 LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPP 317
           L +NQ  G IP   G L+ L  L L  N L G +P  I K++SL  L L +N   G LP 
Sbjct: 339 LQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPV 398

Query: 318 SISNLTNLKELALLYNHLSGSIPPSLG-NLILRELLLSGNHFAGYLPYNICQGGALEIFT 376
            ++ L  L  LAL  NH +G IP  LG N  L  L L+ N F G++P N+C    L+   
Sbjct: 399 DMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLL 458

Query: 377 VSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISS 436
           +  N+ +G++P+ +  C++L R+ L  NNL G + + +    NL F DLS NNF G I  
Sbjct: 459 LGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFVE-KQNLLFFDLSGNNFTGPIPP 517

Query: 437 NWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKL 495
           + G    +  + +S N ++G IP E+G+  +L+ L+LS N + G +P EL   + L++L
Sbjct: 518 SLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSEL 576

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  239 bits (610), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 258/539 (47%), Gaps = 98/539 (18%)

Query: 53  RLPSWTKATTNV-SSKISPCAWYGISCNDAGRVINISLRNTGLSGTL------------- 98
           R+P    +T  + +S+ +PC W+GI+C+D+  V +++   + +SG L             
Sbjct: 45  RVPPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQIL 104

Query: 99  ----HGFS------FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148
               + FS        +  +LA LDL+ +G    IP  +  L  L+ L++  N L G +P
Sbjct: 105 DLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELP 164

Query: 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNS------ 202
             + ++  ++V +L  N L G +P S+G+   +  L +Y N FSG IP  IGNS      
Sbjct: 165 ESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQIL 224

Query: 203 ------------------------------------------KSIFNLDLSSNQFSGPIP 220
                                                     K++  LDLS N+F G +P
Sbjct: 225 YLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVP 284

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL 280
              GN S+L +L +   +LS  I SSLG  K+L  L L+EN+ +G IP   GN +SL+ L
Sbjct: 285 PALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLL 344

Query: 281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI--------------------- 319
           +L+ N+L G IP  +GK+R L  L+L EN+F G +P  I                     
Sbjct: 345 KLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELP 404

Query: 320 ---SNLTNLKELALLYNHLSGSIPPSLG-NLILRELLLSGNHFAGYLPYNICQGGALEIF 375
              + +  LK   L  N   G+IPP LG N  L E+   GN   G +P N+C G  L I 
Sbjct: 405 VEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRIL 464

Query: 376 TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS 435
            +  N   GTIP S+ +C ++ R  L  NNL+G + E  +   +L+F+D + NNF G I 
Sbjct: 465 NLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLPE-FSQDHSLSFLDFNSNNFEGPIP 523

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK 494
            + G C  L ++N+S N  TG IP ++GN   L  ++LS N + G +P +L    SL +
Sbjct: 524 GSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLER 582

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
225456161	1037	PREDICTED: probable LRR receptor-like se	0.915	0.457	0.492	1e-123
225456159	1038	PREDICTED: probable LRR receptor-like se	0.915	0.456	0.492	1e-121
359491509	1032	PREDICTED: probable LRR receptor-like se	0.938	0.470	0.468	1e-115
255545702	1008	receptor protein kinase, putative [Ricin	0.932	0.479	0.478	1e-115
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.938	0.470	0.468	1e-115
297846642	1007	hypothetical protein ARALYDRAFT_891227 [	0.899	0.462	0.469	1e-113
359484867	1217	PREDICTED: probable leucine-rich repeat	0.901	0.383	0.445	1e-106
356553711	1035	PREDICTED: probable LRR receptor-like se	0.888	0.444	0.454	1e-103
297813345	1019	hypothetical protein ARALYDRAFT_489780 [	0.928	0.472	0.425	1e-103
186511602	1045	Leucine-rich repeat-containing protein [	0.928	0.460	0.427	1e-103

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/506 (49%), Positives = 321/506 (63%), Gaps = 32/506 (6%)

Query: 28  VSSEPNEEADTLLKWKASLQSRNQSRLPSW-------TKATTNVSSKISPCAWYGISCND 80
           VSS  NEE   LLKWKA+L + N S L SW       T ++T++ +++SPC WYGISCN 
Sbjct: 27  VSSYSNEETQALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGISCNH 86

Query: 81  AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDT 140
           AG VI I+L  +GL GTL  FSFSSFP LAY+D++ + L G IPP++GLLS LK+L +  
Sbjct: 87  AGSVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSI 146

Query: 141 NKLDGSIPPEVGQLSSMEVFFLCSNYLN------------------------GSVPPSLG 176
           N+  G IPPE+G L+++EV  L  N LN                        GS+P SLG
Sbjct: 147 NQFSGGIPPEIGLLTNLEVLHLVQNQLNGSIPHEIGQLTSLYELALYTNQLEGSIPASLG 206

Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
           NLS+++ L++Y+N  SG IP ++GN  ++  L   +N  +GPIP  FGNL +L  LYL+ 
Sbjct: 207 NLSNLASLYLYENQLSGSIPPEMGNLTNLVQLYSDTNNLTGPIPSTFGNLKHLTVLYLFN 266

Query: 237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG 296
           NSLS PI   +G  KSL  L L  N  +G IP S  +L+ L+ L L  N+L G IP EIG
Sbjct: 267 NSLSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIG 326

Query: 297 KMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSG 355
            ++SL  L+L+ENQ  G +P S+ NLTNL+ L L  N LSG  P  +G L  L  L +  
Sbjct: 327 NLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNRLSGYFPQEIGKLHKLVVLEIDT 386

Query: 356 NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA 415
           N   G LP  ICQGG+LE FTVS+NH  G IP S++NC +L R    GN LTGN+SE + 
Sbjct: 387 NQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNVSEVVG 446

Query: 416 IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL 475
             PNL FIDLS N F+GE+S NWG+CP+L  L ++ NNITG IP + G S+ L  LDLS 
Sbjct: 447 DCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLILLDLSS 506

Query: 476 NHIVGEIPKELGKLNSLTKLILRGNQ 501
           NH+VGEIPK++G L SL  LIL  NQ
Sbjct: 507 NHLVGEIPKKMGSLTSLLGLILNDNQ 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/506 (49%), Positives = 321/506 (63%), Gaps = 32/506 (6%)

Query: 28  VSSEPNEEADTLLKWKASLQSRNQSRLPSW-------TKATTNVSSKISPCAWYGISCND 80
           VSS  NEE   LLKWKASLQ+ N S L SW       T ++T++ +  SPC WYGISCN 
Sbjct: 27  VSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNH 86

Query: 81  AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKF----- 135
           AG VI I+L  +GL+GTL  FSFSSFP LAY+D++ + L G IPP++GLL  LK+     
Sbjct: 87  AGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSI 146

Query: 136 -------------------LFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLG 176
                              L +  N+L+GSIP E+GQL+S+    L +N L GS+P SLG
Sbjct: 147 NQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPASLG 206

Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
           NLS+++ L++Y+N  SG IP ++GN  ++  +  ++N  +GPIP  FGNL  L  LYL+ 
Sbjct: 207 NLSNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLYLFN 266

Query: 237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG 296
           NSLS PI   +G  KSL +L L EN  +G IP S  +L+ L+ L L  N+L G IP EIG
Sbjct: 267 NSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIG 326

Query: 297 KMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSG 355
            ++SL  L+L+ENQ  G +P S+ NLTNL+ L L  N LSG IP  +G L  L  L +  
Sbjct: 327 NLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLEIDT 386

Query: 356 NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA 415
           N   G LP  ICQ G+L  F VS+NH  G IP S++NC +L R    GN LTGNISE + 
Sbjct: 387 NQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISEVVG 446

Query: 416 IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL 475
             PNL FIDLS N F+GE+S NWG+CP+L  L ++ NNITG IP + G S+ L  LDLS 
Sbjct: 447 DCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLDLSS 506

Query: 476 NHIVGEIPKELGKLNSLTKLILRGNQ 501
           NH+VGEIPK++G L SL  LIL  NQ
Sbjct: 507 NHLVGEIPKKMGSLTSLLGLILNDNQ 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/523 (46%), Positives = 326/523 (62%), Gaps = 37/523 (7%)

Query: 12  SLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVS------ 65
           SLV L+L+ +      VSS  NEE   LLKWKA+L ++N   L  W+    N++      
Sbjct: 11  SLVSLLLWIMLVCSDNVSSHSNEETQALLKWKATLLNQN---LLLWSLHPNNITNSSAQP 67

Query: 66  --SKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTI 123
             +  +PC W+GISC  AG VI I+L + GL GTL  FSFSSFP LAY D+  + L G I
Sbjct: 68  GTATRTPCKWFGISCK-AGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPI 126

Query: 124 PPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGS------------- 170
           PP++G LS LK+L + TN+  G IP E+G L+++EV  L  N LNGS             
Sbjct: 127 PPQIGFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCD 186

Query: 171 -----------VPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPI 219
                      +P SLGNLS+++ L++ +N  SG IP ++GN   +  L L++N  +GPI
Sbjct: 187 LSLYTNKLEGTIPASLGNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPI 246

Query: 220 PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLST 279
           P   GNL +L  L LY N LS PI + +G  K L +L L+ N  +G IP S G+L+ L +
Sbjct: 247 PSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKS 306

Query: 280 LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339
           L+L  N+L G IP E+G +RSL  L++++NQ  G +P  + NL NL+ L L  N LS SI
Sbjct: 307 LQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTLLGNLINLEILYLRDNKLSSSI 366

Query: 340 PPSLGNL-ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR 398
           PP +G L  L EL +  N  +G+LP  ICQGG+LE FTV +N   G IP S++NC SL R
Sbjct: 367 PPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLAR 426

Query: 399 VHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI 458
             L GN LTGNISEA  + PNL  I+LS N FYGE+S NWG+C KL  L+++ NNITG I
Sbjct: 427 ARLQGNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSI 486

Query: 459 PREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           P + G S+QL  L+LS NH+VGEIPK+LG ++SL KLIL  N+
Sbjct: 487 PADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNR 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/487 (47%), Positives = 319/487 (65%), Gaps = 4/487 (0%)

Query: 19  FFVSSFLITVSSEPNEEADTLLKWKASLQSR---NQSRLPSWTKATTNVSSKISPCAWYG 75
           F V      ++S+  E+A++LLKW A+L ++   N+S  P   + +TN ++K SPC W G
Sbjct: 17  FGVMYAAFNIASDSAEQANSLLKWAATLHNQKYSNRSPWPLLPENSTNPNAKTSPCTWLG 76

Query: 76  ISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKF 135
           +SCN  G V+ I+L  +GL+GTLH  SFS+FP L +LDL+ + L  TIP E+  L  L F
Sbjct: 77  LSCNRGGSVVRINLTTSGLNGTLHELSFSAFPDLEFLDLSCNSLSSTIPLEITQLPKLIF 136

Query: 136 LFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFI 195
           L + +N+L G IPP++G L+++    L +N L+GS+P S+GNL+ ++ L +YDN FSG I
Sbjct: 137 LDLSSNQLSGVIPPDIGLLTNLNTLRLSANRLDGSIPSSVGNLTELAWLHLYDNRFSGSI 196

Query: 196 PSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLID 255
           PS++GN K++  L + +N  +G IP  FG+L+ L  L+LY N LS  I   LG  KSL  
Sbjct: 197 PSEMGNLKNLVELFMDTNLLTGSIPSTFGSLTKLVQLFLYNNQLSGHIPQELGDLKSLTS 256

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
           L L  N  +G IP S G LTSL+ L L +N+L G+IP E+G + SLS L+L+EN+  G +
Sbjct: 257 LSLFGNNLSGPIPASLGGLTSLTILHLYQNQLSGTIPKELGNLNSLSNLELSENKLTGSI 316

Query: 316 PPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEI 374
           P S+ NL+ L+ L L  N LSG IP  + N   L  L L  N   GYLP NICQ   L+ 
Sbjct: 317 PASLGNLSRLELLFLKNNQLSGPIPEQIANLSKLSLLQLQSNQLTGYLPQNICQSKVLQN 376

Query: 375 FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI 434
           F+V++N  +G IP S+R+C SL+R+HL GN   GNISE   +YP L F+D+  N F+GEI
Sbjct: 377 FSVNDNRLEGPIPKSMRDCKSLVRLHLEGNQFIGNISEDFGVYPYLQFVDIRYNKFHGEI 436

Query: 435 SSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK 494
           SS WG CP L TL +S NNI+G IP EIGN+++LQ LD S N +VG IPKELGKL SL +
Sbjct: 437 SSKWGMCPHLGTLLISGNNISGIIPPEIGNAARLQGLDFSSNQLVGRIPKELGKLTSLVR 496

Query: 495 LILRGNQ 501
           + L  NQ
Sbjct: 497 VNLEDNQ 503

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/523 (46%), Positives = 325/523 (62%), Gaps = 37/523 (7%)

Query: 12  SLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVS------ 65
           SLV L L+ +      VSS  NEE   LLKWKA+L ++N   L  W+    N++      
Sbjct: 11  SLVSLGLWIMLVCSDNVSSHSNEETQALLKWKATLLNQN---LLLWSLHPNNITNSSAQP 67

Query: 66  --SKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTI 123
             +  +PC W+GISC  AG VI I+L + GL GTL  FSFSSFP LAY D+  + L G I
Sbjct: 68  GTATRTPCKWFGISCK-AGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPI 126

Query: 124 PPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN--------------- 168
           PP++G LS LK+L + TN+  G IP E+G L+++EV  L  N LN               
Sbjct: 127 PPQIGFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCD 186

Query: 169 ---------GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPI 219
                    GS+P SLGNLS+++ L++ +N  SG IP ++GN   +  L L++N  +GPI
Sbjct: 187 LSLYTNKLEGSIPASLGNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPI 246

Query: 220 PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLST 279
           P   GNL +L  L LY N LS PI + +G  K L +L L+ N  +G IP S G+L+ L +
Sbjct: 247 PSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKS 306

Query: 280 LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339
           L+L  N+L G IP E+G +RSL  L++++NQ  G +P S+ NL NL+ L L  N LS SI
Sbjct: 307 LQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTSLGNLINLEILYLRDNKLSSSI 366

Query: 340 PPSLGNL-ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR 398
           PP +G L  L EL +  N  +G+LP  ICQGG+LE FTV +N   G IP S++NC SL R
Sbjct: 367 PPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLAR 426

Query: 399 VHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI 458
             L  N LTGNISEA  + PNL  I+LS N FYGE+S NWG+C KL  L+++ NNITG I
Sbjct: 427 ARLQRNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSI 486

Query: 459 PREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           P + G S+QL  L+LS NH+VGEIPK+LG ++SL KLIL  N+
Sbjct: 487 PADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNR 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846642|ref|XP_002891202.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] gi|297337044|gb|EFH67461.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/469 (46%), Positives = 302/469 (64%), Gaps = 3/469 (0%)

Query: 35  EADTLLKWKASLQSRNQS-RLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTG 93
           EA+ LLKWK++  ++ +S +L SW     N ++  S  +WYG+SCN  G +  ++L    
Sbjct: 33  EANALLKWKSTFTNQKRSSKLSSWVN-DANTNTSFSCTSWYGVSCNSRGSIKKLNLTGNA 91

Query: 94  LSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQ 153
           + GT   F FSS P LAY+D + +   GTIPP+ G L  L +  + TN L   IPPE+G 
Sbjct: 92  IEGTFQDFPFSSLPNLAYIDFSMNRFSGTIPPQFGNLFKLIYFDLSTNHLTREIPPELGN 151

Query: 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
           L +++   L +N L GS+P S+G L ++++L++Y N  +G IP D+GN + + +L+LS N
Sbjct: 152 LQNLKGLSLSNNKLAGSIPSSIGKLKNLTVLYLYKNYLTGVIPPDLGNMEYMIDLELSHN 211

Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGN 273
           + +G IP   GNL NL  LYL+ N L+  I   LG  +S+I L L+EN+ TG IP S GN
Sbjct: 212 KLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMISLALSENKLTGSIPSSLGN 271

Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           L +L+ L L +N + G IP E+G M S+  L+L++N   G +P S  N T LK L L YN
Sbjct: 272 LKNLTVLYLHQNYITGVIPPELGNMESMIDLELSQNNLTGSIPSSFGNFTKLKSLYLSYN 331

Query: 334 HLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
           HLSG+IPP + N   L EL L+ N+F+G+LP NIC+GG L+   + +NH +G IP S+R+
Sbjct: 332 HLSGAIPPGVANSSELTELQLAINNFSGFLPKNICKGGKLQFIALYDNHLKGPIPKSLRD 391

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
           C SLIR    GN   GNISEA  +YP+L FIDLS N F GEISSNW K PKL  L +S N
Sbjct: 392 CKSLIRAKFVGNKFVGNISEAFGVYPDLNFIDLSHNKFNGEISSNWQKSPKLGALIMSNN 451

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           NITG IP EI N  QL  LDLS N++ GE+P+ +G L +L++L L GNQ
Sbjct: 452 NITGAIPPEIWNMKQLGELDLSANNLSGELPEAIGNLTNLSRLRLNGNQ 500

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484867|ref|XP_002273645.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/525 (44%), Positives = 315/525 (60%), Gaps = 58/525 (11%)

Query: 27  TVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPC-AWYGISCNDAGRVI 85
           +++ E  +EA  LL WK+SL  ++QS L SW  A        SPC  W+G++C+ +  V 
Sbjct: 170 SLTIEQEKEALALLTWKSSLHIQSQSFLSSWFGA--------SPCNQWFGVTCHQSRSVS 221

Query: 86  NISLRNTGLSG----------------TLHGFSFSSF--------PRLAYLDLTGSGLFG 121
           +++L +  L G                 +H  SFS            L +L LT + L G
Sbjct: 222 SLNLHSCCLRGMLHNLNFLLLPNLLTLDVHSNSFSGLIPYQVGLLTSLTFLALTSNHLRG 281

Query: 122 TIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181
            IPP +G L +L  L++D NKL GSIP E+G L S+    L +N L+G +PPS+GNL ++
Sbjct: 282 PIPPTIGNLRNLTTLYLDENKLFGSIPHEIGSLRSLNDLELSTNNLSGPIPPSIGNLRNL 341

Query: 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241
           + L++Y+N  SG IP +IG  +S+ +L+LS+N  SGPIP   GNL NL +LYLY N LS 
Sbjct: 342 TTLYLYENKLSGSIPHEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLYENKLSG 401

Query: 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSL 301
            I   +G  +SL DL L+ N  +G IP S GNL +L+TL L +N+L GSIP EIG +RSL
Sbjct: 402 SIPHEIGSLRSLNDLVLSTNNLSGPIPPSIGNLRNLTTLYLYENKLSGSIPHEIGSLRSL 461

Query: 302 SVLDLNENQFKGVLPPSISNLTNLKELALL------------------------YNHLSG 337
           + L L+ N   G +PPSI NL NL  L L                         YN L+G
Sbjct: 462 NDLVLSTNNLSGPIPPSIGNLRNLTTLYLYENKLSGFIPQEIGLLSNLTHLLLHYNQLNG 521

Query: 338 SIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSL 396
            IP  + NLI L+ L L  N+F G+LP  +C GGALE FT   N+F G IP S+RNCTSL
Sbjct: 522 PIPQEIDNLIHLKSLHLDENNFTGHLPQQMCLGGALENFTAMGNNFTGPIPMSLRNCTSL 581

Query: 397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG 456
            RV LN N L GNI+E   +YPNL F+DLS NN YGE+S  WG+C  L +LN+S NN++G
Sbjct: 582 FRVRLNRNQLKGNITEGFGVYPNLNFMDLSSNNLYGELSQKWGQCRSLTSLNISHNNLSG 641

Query: 457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            IP ++G + QL  LDLS NH++G+IP+ELG+L S+  L+L  NQ
Sbjct: 642 IIPPQLGEAIQLHQLDLSSNHLLGKIPRELGRLTSMFNLLLSNNQ 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553711|ref|XP_003545196.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/469 (45%), Positives = 291/469 (62%), Gaps = 9/469 (1%)

Query: 34  EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTG 93
           + +  LL+W+ASL +++Q+ L SWT       S +SPC W GI C ++  V  IS+ N G
Sbjct: 51  DRSKCLLEWRASLDNQSQASLSSWT-------SGVSPCRWKGIVCKESNSVTAISVTNLG 103

Query: 94  LSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQ 153
           L GTLH  +FSSFP+L  LD++ +   GTIP ++  LS +  L +D N  +GSIP  + +
Sbjct: 104 LKGTLHTLNFSSFPKLLTLDISYNRFSGTIPQQIANLSRVSRLIMDDNLFNGSIPISMMK 163

Query: 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
           LSS+    L SN L+G +P  +G L  +  L +  N  SG IP  IG   ++  L+LSSN
Sbjct: 164 LSSLSWLNLASNKLSGYIPKEIGQLRSLKYLLLGFNNLSGTIPPTIGMLANLVELNLSSN 223

Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGN 273
             SG IP    NL+NL+SL L  NSLS PI   +G   +LI  ++++N  +G IP S GN
Sbjct: 224 SISGQIP-SVRNLTNLESLKLSDNSLSGPIPPYIGDLVNLIVFEIDQNNISGLIPSSIGN 282

Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           LT L  L +  N + GSIP  IG + +L +LDL +N   G +P +  NLT L  L +  N
Sbjct: 283 LTKLVNLSIGTNMISGSIPTSIGNLVNLMILDLCQNNISGTIPATFGNLTKLTYLLVFEN 342

Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
            L G +PP++ NL     L LS N F G LP  IC GG+L+ F    N+F G +P S++N
Sbjct: 343 TLHGRLPPAMNNLTNFISLQLSTNSFTGPLPQQICLGGSLDQFAADYNYFTGPVPKSLKN 402

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
           C+SL R+ L+GN LTGNIS+   +YP L +IDLS NNFYG IS NW KCP L +L +S N
Sbjct: 403 CSSLYRLRLDGNRLTGNISDVFGVYPELNYIDLSSNNFYGHISPNWAKCPGLTSLRISNN 462

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           N++GGIP E+G + +LQ L LS NH+ G+IPKELG L +L KL +  N+
Sbjct: 463 NLSGGIPPELGQAPKLQVLVLSSNHLTGKIPKELGNLTTLWKLSIGDNE 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813345|ref|XP_002874556.1| hypothetical protein ARALYDRAFT_489780 [Arabidopsis lyrata subsp. lyrata] gi|297320393|gb|EFH50815.1| hypothetical protein ARALYDRAFT_489780 [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 310/515 (60%), Gaps = 34/515 (6%)

Query: 14  VLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSR-NQSRLPSWTKATTNVSSKISPC- 71
           VLLI+  V S  + VS+   EEA+ LLKWK++  ++ + S+L SW    T+     S C 
Sbjct: 7   VLLIISIVLSCSLVVSATV-EEANALLKWKSTFTNQTSSSKLSSWVNPNTS-----SFCT 60

Query: 72  AWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLS 131
           +WYG+SC   G ++ ++L NTG+ GT   F FSS P L Y+DL+ +   GTI P  G  S
Sbjct: 61  SWYGVSCL-RGSIVRLNLTNTGIEGTFEEFPFSSLPNLTYVDLSMNRFSGTISPLWGRFS 119

Query: 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLF 191
            L +  +  N+L G IPPE+G LS+++   L  N LNGS+P  +G L+ ++ + IYDNL 
Sbjct: 120 KLVYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLL 179

Query: 192 SGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251
           +G IPS  GN   + NL L  N  SGPIP   GNL NL+ L L  N+L+  I SS G  K
Sbjct: 180 TGPIPSSFGNLTRLVNLYLFINSLSGPIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLK 239

Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
           ++  L + ENQ +G IP   GN+T+L TL L  N+L G IP  +G +++L++L L  NQ 
Sbjct: 240 NVSLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAILHLYLNQL 299

Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN------LILRELLLSG---------- 355
            G +PP + ++  + +L +  N L+G +P S G       L LR+  LSG          
Sbjct: 300 SGSIPPELGDMEAMIDLEISENKLTGPVPDSFGKLTVLEWLFLRDNQLSGPIPPGIANST 359

Query: 356 ---------NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
                    N+F G+LP  IC+ G LE  T+ +NHF+G +P S+RNC SL+RV   GN+ 
Sbjct: 360 ELTVLQLDTNNFTGFLPDTICRSGKLENLTLDDNHFEGPVPKSLRNCKSLVRVRFKGNHF 419

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466
           +G+IS+A  +YP L FIDLS NNF+G++S+NW +  KL    +S N+I+G IP EI N +
Sbjct: 420 SGDISDAFGVYPTLNFIDLSNNNFHGQLSANWEQSTKLVAFILSNNSISGAIPPEIWNMT 479

Query: 467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           QL  LDLS N I GE+P+ +  +N ++KL L GNQ
Sbjct: 480 QLNQLDLSFNRITGELPESISNINRISKLQLNGNQ 514

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511602|ref|NP_849538.2| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|281185491|sp|Q8VZG8.3|Y4885_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At4g08850; Flags: Precursor gi|18086327|gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] gi|224589610|gb|ACN59338.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332657282|gb|AEE82682.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 311/515 (60%), Gaps = 34/515 (6%)

Query: 14  VLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSR-NQSRLPSWTKATTNVSSKISPC- 71
           VLLI+  V S    VS+   EEA+ LLKWK++  ++ + S+L SW    T+     S C 
Sbjct: 30  VLLIISIVLSCSFAVSATV-EEANALLKWKSTFTNQTSSSKLSSWVNPNTS-----SFCT 83

Query: 72  AWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLS 131
           +WYG++C+  G +I ++L NTG+ GT   F FSS P L ++DL+ +   GTI P  G  S
Sbjct: 84  SWYGVACS-LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFS 142

Query: 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLF 191
            L++  +  N+L G IPPE+G LS+++   L  N LNGS+P  +G L+ ++ + IYDNL 
Sbjct: 143 KLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLL 202

Query: 192 SGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251
           +G IPS  GN   + NL L  N  SG IP   GNL NL+ L L  N+L+  I SS G  K
Sbjct: 203 TGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLK 262

Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
           ++  L + ENQ +G IP   GN+T+L TL L  N+L G IP  +G +++L+VL L  NQ 
Sbjct: 263 NVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQL 322

Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN------LILRELLLSG---------- 355
            G +PP +  + ++ +L +  N L+G +P S G       L LR+  LSG          
Sbjct: 323 NGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANST 382

Query: 356 ---------NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
                    N+F G+LP  IC+GG LE  T+ +NHF+G +P S+R+C SLIRV   GN+ 
Sbjct: 383 ELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSF 442

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466
           +G+ISEA  +YP L FIDLS NNF+G++S+NW +  KL    +S N+ITG IP EI N +
Sbjct: 443 SGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMT 502

Query: 467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           QL  LDLS N I GE+P+ +  +N ++KL L GN+
Sbjct: 503 QLSQLDLSSNRITGELPESISNINRISKLQLNGNR 537

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.752	0.348	0.488	7.8e-94
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.799	0.396	0.447	4e-90
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.891	0.369	0.343	7.2e-68
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.893	0.774	0.341	2.2e-66
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.826	0.392	0.371	1.1e-65
TAIR|locus:2207036	977	AT1G72180 [Arabidopsis thalian	0.884	0.468	0.343	2.6e-65
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.816	0.372	0.365	3.9e-65
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.810	0.381	0.360	4.3e-65
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.893	0.474	0.352	4.5e-64
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.818	0.377	0.345	7.5e-64

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 191/391 (48%), Positives = 254/391 (64%)

Query:   112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
             L L+ + L G+IP  +G L +L  L++  N L G IPPE+G + SM    L  N L GS+
Sbjct:   227 LALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSI 286

Query:   172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKS 231
             P SLGNL +++LL ++ N  +G IP  +GN +S+ +L+LS+N+ +G IP   GNL NL  
Sbjct:   287 PSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI 346

Query:   232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
             LYLY N L+  I   LG  +S+IDLQLN N+ TG IP SFGNL +L+ L L  N L G I
Sbjct:   347 LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query:   292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRE 350
             P E+G M S+  LDL++N+  G +P S  N T L+ L L  NHLSG+IPP + N   L  
Sbjct:   407 PQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTT 466

Query:   351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI 410
             L+L  N+F G+ P  +C+G  L+  ++  NH +G IP S+R+C SLIR    GN  TG+I
Sbjct:   467 LILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDI 526

Query:   411 SEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA 470
              EA  IYP+L FID S N F+GEISSNW K PKL  L +S NNITG IP EI N +QL  
Sbjct:   527 FEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVE 586

Query:   471 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             LDLS N++ GE+P+ +G L +L++L L GNQ
Sbjct:   587 LDLSTNNLFGELPEAIGNLTNLSRLRLNGNQ 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 186/416 (44%), Positives = 261/416 (62%)

Query:    87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGS 146
             + L     SGT+    +  F +L Y DL+ + L G IPPE+G LS+L  L +  NKL+GS
Sbjct:   123 VDLSMNRFSGTISPL-WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGS 181

Query:   147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF 206
             IP E+G+L+ +    +  N L G +P S GNL+ +  L+++ N  SG IPS+IGN  ++ 
Sbjct:   182 IPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLR 241

Query:   207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
              L L  N  +G IP  FGNL N+  L ++ N LS  I   +G   +L  L L+ N+ TG 
Sbjct:   242 ELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGP 301

Query:   267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
             IP + GN+ +L+ L L  N+L GSIP E+G+M S+  L+++EN+  G +P S   LT L+
Sbjct:   302 IPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALE 361

Query:   327 ELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT 385
              L L  N LSG IPP + N   L  L L  N+F G+LP  IC+GG LE  T+ +NHF+G 
Sbjct:   362 WLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGP 421

Query:   386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445
             +P S+R+C SLIRV   GN+ +G+ISEA  +YP L FIDLS NNF+G++S+NW +  KL 
Sbjct:   422 VPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLV 481

Query:   446 TLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
                +S N+ITG IP EI N +QL  LDLS N I GE+P+ +  +N ++KL L GN+
Sbjct:   482 AFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNR 537

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 163/475 (34%), Positives = 255/475 (53%)

Query:    33 NEEADTLLKWKASLQSRNQSRLP--SWTKATTNVSSKISPCAWYGISCNDAG--RVINIS 88
             N +  TLL+ K SL +  Q   P   W       S  I+ C+W G++C++ G  RVI ++
Sbjct:    24 NNDLQTLLEVKKSLVTNPQEDDPLRQWN------SDNINYCSWTGVTCDNTGLFRVIALN 77

Query:    89 LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148
             L   GL+G++  + F  F  L +LDL+ + L G IP  +  L+ L+ LF+ +N+L G IP
Sbjct:    78 LTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIP 136

Query:   149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208
              ++G L ++    +  N L G +P +LGNL ++ +L +     +G IPS +G    + +L
Sbjct:   137 SQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSL 196

Query:   209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP 268
              L  N   GPIP   GN S+L       N L+  I + LG+ ++L  L L  N  TG IP
Sbjct:   197 ILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query:   269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328
                G ++ L  L L  N+L G IP  +  + +L  LDL+ N   G +P    N++ L +L
Sbjct:   257 SQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDL 316

Query:   329 ALLYNHLSGSIPPSL--GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTI 386
              L  NHLSGS+P S+   N  L +L+LSG   +G +P  + +  +L+   +S N   G+I
Sbjct:   317 VLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSI 376

Query:   387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT 446
             P ++     L  ++L+ N L G +S +++   NL ++ L  NN  G++        KL+ 
Sbjct:   377 PEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEV 436

Query:   447 LNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             L +  N  +G IP+EIGN + L+ +D+  NH  GEIP  +G+L  L  L LR N+
Sbjct:   437 LFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNE 491

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 160/469 (34%), Positives = 237/469 (50%)

Query:    33 NEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNT 92
             N +  TLL  +  L         +W    TN +S+ +PC W+GI C+D+ +V +++   +
Sbjct:    28 NSDGLTLLSLRKHLDKVPPELTSTWK---TN-ASEATPCNWFGIICDDSKKVTSLNFTGS 83

Query:    93 GLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVG 152
             G+SG L G        L  LD++ +   G IP  +G  S L ++ +  N   G +P  +G
Sbjct:    84 GVSGQL-GPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFSGKVPDTLG 142

Query:   153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
              L S+   +L SN L G +P SL  +  ++ L +  N  +G IP ++G +K + +L L  
Sbjct:   143 SLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVEHNNLTGLIPQNVGEAKELLHLRLFD 202

Query:   213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
             NQF+G IP   GN S L+ LYL+ N L   + +SL   +SL DL +  N   G +     
Sbjct:   203 NQFTGTIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTDLFVANNSLRGTVQFGST 262

Query:   273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
                +L TL LS NE  G +P E+G   SL  L +      G +P S+  L NL  L L  
Sbjct:   263 KCRNLVTLDLSYNEFEGGVPPELGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSE 322

Query:   333 NHLSGSIPPSLGNLILRELL-LSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR 391
             N LSGSIP  LGN     LL L+ N   G +P  + +   LE   + EN F G IP  + 
Sbjct:   323 NRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIW 382

Query:   392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451
                SL ++ +  NNLTG + E +    NL  + L  N+FYG I  N G    L+ ++   
Sbjct:   383 KIQSLTQLLVYRNNLTGKLPEEITKLKNLKIVTLFNNSFYGVIPPNLGLNSNLEIIDFIG 442

Query:   452 NNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
             NN TG IPR + +   L   +L  N + G+IP  + +  +L++ ILR N
Sbjct:   443 NNFTGEIPRNLCHGKMLTVFNLGSNRLHGKIPASVSQCKTLSRFILREN 491

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 1.1e-65, P = 1.1e-65
 Identities = 161/433 (37%), Positives = 228/433 (52%)

Query:    87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNK-LDG 145
             +SL    L G +      +   L  L L  + L G IP  +G L +L+      NK L G
Sbjct:   149 LSLNTNNLEGVIPS-ELGNLVNLIELTLFDNKLAGEIPRTIGELKNLEIFRAGGNKNLRG 207

Query:   146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
              +P E+G   S+    L    L+G +P S+GNL  +  + +Y +L SG IP +IGN   +
Sbjct:   208 ELPWEIGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIGNCTEL 267

Query:   206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
              NL L  N  SG IP+  G L  L+SL L+ N+L   I + LG    L  + L+EN  TG
Sbjct:   268 QNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGTCPELFLVDLSENLLTG 327

Query:   266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
              IPRSFGNL +L  L+LS N+L G+IP+E+     L+ L+++ NQ  G +PP I  LT+L
Sbjct:   328 NIPRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIPPLIGKLTSL 387

Query:   326 KELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
                    N L+G IP SL     L+ + LS N+ +G +P  I +   L    +  N+  G
Sbjct:   388 TMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSNYLSG 447

Query:   385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
              IP  + NCT+L R+ LNGN L GNI   +    NL FID+S N   G I      C  L
Sbjct:   448 FIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCTSL 507

Query:   445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504
             + +++  N +TGG+P  +  S  LQ +DLS N + G +P  +G L  LTKL L  N+ + 
Sbjct:   508 EFVDLHSNGLTGGLPGTLPKS--LQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSG 565

Query:   505 TLSFINKVCSSLE 517
              +      C SL+
Sbjct:   566 EIPREISSCRSLQ 578

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2207036 AT1G72180 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 2.6e-65, P = 2.6e-65
 Identities = 163/475 (34%), Positives = 249/475 (52%)

Query:    31 EPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND-AGRVINISL 89
             E   E   L ++K  L   + + L SW  +        SPC + GI+C+  +G VI ISL
Sbjct:    30 ESTVEKQALFRFKNRLDD-SHNILQSWKPSD-------SPCVFRGITCDPLSGEVIGISL 81

Query:    90 RNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPP 149
              N  LSGT+   S S+  +L+ L L  + + G IPPE+    +LK L + +N+L G+IP 
Sbjct:    82 GNVNLSGTISP-SISALTKLSTLSLPSNFISGRIPPEIVNCKNLKVLNLTSNRLSGTIP- 139

Query:   150 EVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS-GFIPSDIGNSKSIFNL 208
              +  L S+E+  +  N+LNG     +GN++ +  L + +N +  G IP  IG  K +  L
Sbjct:   140 NLSPLKSLEILDISGNFLNGEFQSWIGNMNQLVSLGLGNNHYEEGIIPESIGGLKKLTWL 199

Query:   209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS--PILSSLGKFKSLIDLQLNENQFTGY 266
              L+ +  +G IP    +L+ L +  +  N++S   PIL S  +  +L  ++L  N  TG 
Sbjct:   200 FLARSNLTGKIPNSIFDLNALDTFDIANNAISDDFPILIS--RLVNLTKIELFNNSLTGK 257

Query:   267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
             IP    NLT L    +S N+L G +P+E+G ++ L V   +EN F G  P    +L++L 
Sbjct:   258 IPPEIKNLTRLREFDISSNQLSGVLPEELGVLKELRVFHCHENNFTGEFPSGFGDLSHLT 317

Query:   327 ELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT 385
              L++  N+ SG  P ++G    L  + +S N F G  P  +CQ   L+     +N F G 
Sbjct:   318 SLSIYRNNFSGEFPVNIGRFSPLDTVDISENEFTGPFPRFLCQNKKLQFLLALQNEFSGE 377

Query:   386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445
             IP S   C SL+R+ +N N L+G + E     P    IDLS N   GE+S   G   +L 
Sbjct:   378 IPRSYGECKSLLRLRINNNRLSGQVVEGFWSLPLAKMIDLSDNELTGEVSPQIGLSTELS 437

Query:   446 TLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
              L +  N  +G IPRE+G  + ++ + LS N++ GEIP E+G L  L+ L L  N
Sbjct:   438 QLILQNNRFSGKIPRELGRLTNIERIYLSNNNLSGEIPMEVGDLKELSSLHLENN 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 3.9e-65, P = 3.9e-65
 Identities = 158/432 (36%), Positives = 231/432 (53%)

Query:    87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN-KLDG 145
             + L + GL+G +          L  L++  + L   +P E+G +S L+ +    N +L G
Sbjct:   159 LCLNSNGLTGKIPP-ELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSG 217

Query:   146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
              IP E+G   +++V  L +  ++GS+P SLG LS +  L +Y  + SG IP ++GN   +
Sbjct:   218 KIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSEL 277

Query:   206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
              NL L  N  SG +P   G L NL+ + L+ N+L  PI   +G  KSL  + L+ N F+G
Sbjct:   278 INLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSG 337

Query:   266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
              IP+SFGNL++L  L LS N + GSIP  +     L    ++ NQ  G++PP I  L  L
Sbjct:   338 TIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL 397

Query:   326 KELALLYNHLSGSIPPSL-GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
                    N L G+IP  L G   L+ L LS N+  G LP  + Q   L    +  N   G
Sbjct:   398 NIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISG 457

Query:   385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
              IP  + NCTSL+R+ L  N +TG I + +    NL+F+DLS NN  G +      C +L
Sbjct:   458 VIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQL 517

Query:   445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504
               LN+S N + G +P  + + ++LQ LD+S N + G+IP  LG L SL +LIL  N    
Sbjct:   518 QMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKN---- 573

Query:   505 TLSFINKVCSSL 516
               SF  ++ SSL
Sbjct:   574 --SFNGEIPSSL 583

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 4.3e-65, P = 4.3e-65
 Identities = 152/422 (36%), Positives = 222/422 (52%)

Query:    86 NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG 145
             N+ + N  +SG+L      +   L+ L    + + G +P  +G L  L       N + G
Sbjct:   149 NLIIYNNRISGSLP-VEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISG 207

Query:   146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
             S+P E+G   S+ +  L  N L+G +P  +G L  +S + +++N FSGFIP +I N  S+
Sbjct:   208 SLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSL 267

Query:   206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
               L L  NQ  GPIP   G+L +L+ LYLY N L+  I   +G     I++  +EN  TG
Sbjct:   268 ETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTG 327

Query:   266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
              IP   GN+  L  L L +N+L G+IP E+  +++LS LDL+ N   G +P     L  L
Sbjct:   328 EIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGL 387

Query:   326 KELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
               L L  N LSG+IPP LG    L  L +S NH +G +P  +C    + I  +  N+  G
Sbjct:   388 FMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSG 447

Query:   385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
              IPT +  C +L+++ L  NNL G     L    N+T I+L +N F G I    G C  L
Sbjct:   448 NIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSAL 507

Query:   445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504
               L ++ N  TG +PREIG  SQL  L++S N + GE+P E+     L +L +  N  + 
Sbjct:   508 QRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSG 567

Query:   505 TL 506
             TL
Sbjct:   568 TL 569

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 4.5e-64, P = 4.5e-64
 Identities = 168/477 (35%), Positives = 254/477 (53%)

Query:    28 VSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISC-NDAGRVIN 86
             V++  +EE  TLL+ K S +  N   L  WT   T+ SS    C W G+SC N    V+ 
Sbjct:    19 VATVTSEEGATLLEIKKSFKDVNNV-LYDWT---TSPSSDY--CVWRGVSCENVTFNVVA 72

Query:    87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGS 146
             ++L +  L G +   +      L  +DL G+ L G IP E+G  S L+ L +  N+L G 
Sbjct:    73 LNLSDLNLDGEISP-AIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGD 131

Query:   147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF 206
             IP  + +L  +E   L +N L G +P +L  + ++ +L +  N  SG IP  I  ++ + 
Sbjct:   132 IPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQ 191

Query:   207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
              L L  N   G I      L+ L    +  NSL+  I  ++G   +   L L+ NQ TG 
Sbjct:   192 YLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGE 251

Query:   267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
             IP   G L  ++TL L  N+L G IP  IG M++L+VLDL+ N   G +PP + NLT  +
Sbjct:   252 IPFDIGFL-QVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTE 310

Query:   327 ELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIF--TVSENHFQ 383
             +L L  N L+GSIPP LGN+  L  L L+ NH  G++P  +  G   ++F   V+ N  +
Sbjct:   311 KLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPEL--GKLTDLFDLNVANNDLE 368

Query:   384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443
             G IP  + +CT+L  ++++GN  +G I  A     ++T+++LS NN  G I     +   
Sbjct:   369 GPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGN 428

Query:   444 LDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
             LDTL++S N I G IP  +G+   L  ++LS NHI G +P + G L S+ ++ L  N
Sbjct:   429 LDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNN 485

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 7.5e-64, P = 7.5e-64
 Identities = 147/426 (34%), Positives = 222/426 (52%)

Query:    76 ISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKF 135
             +  N   ++ + ++ N  LSG L          L  L    + L G +P  +G L+ L  
Sbjct:   151 VEINKLSQLRSFNICNNKLSGPLPE-EIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query:   136 LFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFI 195
                  N   G+IP E+G+  ++++  L  N+++G +P  +G L  +  + ++ N FSGFI
Sbjct:   210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query:   196 PSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLID 255
             P DIGN  S+  L L  N   GPIP   GN+ +LK LYLY N L+  I   LGK   +++
Sbjct:   270 PKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329

Query:   256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
             +  +EN  +G IP     ++ L  L L +N+L G IP+E+ K+R+L+ LDL+ N   G +
Sbjct:   330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPI 389

Query:   316 PPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEI 374
             PP   NLT++++L L +N LSG IP  LG    L  +  S N  +G +P  ICQ   L +
Sbjct:   390 PPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLIL 449

Query:   375 FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI 434
               +  N   G IP  V  C SL+++ + GN LTG     L    NL+ I+L +N F G +
Sbjct:   450 LNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPL 509

Query:   435 SSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK 494
                 G C KL  L+++ N  +  +P EI   S L   ++S N + G IP E+     L +
Sbjct:   510 PPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQR 569

Query:   495 LILRGN 500
             L L  N
Sbjct:   570 LDLSRN 575

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-77
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  262 bits (670), Expect = 1e-77
 Identities = 179/518 (34%), Positives = 267/518 (51%), Gaps = 43/518 (8%)

Query: 11  PSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISP 70
              ++ +LFF     +  S    EE + LL +K+S+    +  L +W       +S    
Sbjct: 9   CPYLIFMLFF---LFLNFSMLHAEELELLLSFKSSINDPLK-YLSNW-------NSSADV 57

Query: 71  CAWYGISCNDAGRVI-------NIS-----------------LRNTGLSGTLHGFSFSSF 106
           C W GI+CN++ RV+       NIS                 L N  LSG +    F++ 
Sbjct: 58  CLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS 117

Query: 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY 166
             L YL+L+ +   G+IP   G + +L+ L +  N L G IP ++G  SS++V  L  N 
Sbjct: 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 167 LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226
           L G +P SL NL+ +  L +  N   G IP ++G  KS+  + L  N  SG IP   G L
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
           ++L  L L  N+L+ PI SSLG  K+L  L L +N+ +G IP S  +L  L +L LS N 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG-- 344
           L G IP+ + ++++L +L L  N F G +P ++++L  L+ L L  N  SG IP +LG  
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 345 -NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
            NL +  L LS N+  G +P  +C  G L    +  N  +G IP S+  C SL RV L  
Sbjct: 356 NNLTV--LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463
           N+ +G +       P + F+D+S NN  G I+S     P L  L+++ N   GG+P   G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            S +L+ LDLS N   G +P++LG L+ L +L L  N+
Sbjct: 474 -SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 1e-63
 Identities = 138/400 (34%), Positives = 207/400 (51%), Gaps = 2/400 (0%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
           S ++   L +L L  + L G IP E+G +  LK++++  N L G IP E+G L+S+    
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
           L  N L G +P SLGNL ++  LF+Y N  SG IP  I + + + +LDLS N  SG IP 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
               L NL+ L+L+ N+ +  I  +L     L  LQL  N+F+G IP++ G   +L+ L 
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
           LS N L G IP+ +    +L  L L  N  +G +P S+    +L+ + L  N  SG +P 
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 342 SLGNLILRELL-LSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
               L L   L +S N+  G +        +L++ +++ N F G +P S  +   L  + 
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLD 481

Query: 401 LNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPR 460
           L+ N  +G +   L     L  + LS N   GEI      C KL +L++S N ++G IP 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 461 EIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
                  L  LDLS N + GEIPK LG + SL ++ +  N
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  193 bits (492), Expect = 3e-53
 Identities = 128/376 (34%), Positives = 200/376 (53%), Gaps = 2/376 (0%)

Query: 109 LAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168
           L ++ L  + L G IP E+G L+ L  L +  N L G IP  +G L +++  FL  N L+
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
           G +PPS+ +L  +  L + DN  SG IP  +   +++  L L SN F+G IP+   +L  
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           L+ L L+ N  S  I  +LGK  +L  L L+ N  TG IP    +  +L  L L  N L 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348
           G IP  +G  RSL  + L +N F G LP   + L  +  L +  N+L G I     ++  
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 349 RELL-LSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
            ++L L+ N F G LP +      LE   +S N F G +P  + + + L+++ L+ N L+
Sbjct: 454 LQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467
           G I + L+    L  +DLS N   G+I +++ + P L  L++S N ++G IP+ +GN   
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 468 LQALDLSLNHIVGEIP 483
           L  +++S NH+ G +P
Sbjct: 573 LVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (389), Expect = 9e-40
 Identities = 98/261 (37%), Positives = 142/261 (54%), Gaps = 2/261 (0%)

Query: 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLC 163
           +S PRL  L L  +   G IP  +G  ++L  L + TN L G IP  +    ++    L 
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 164 SNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF 223
           SN L G +P SLG    +  + + DN FSG +PS+      ++ LD+S+N   G I    
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283
            ++ +L+ L L  N     +  S G  K L +L L+ NQF+G +PR  G+L+ L  L+LS
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343
           +N+L G IPDE+   + L  LDL+ NQ  G +P S S +  L +L L  N LSG IP +L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 344 GNL-ILRELLLSGNHFAGYLP 363
           GN+  L ++ +S NH  G LP
Sbjct: 568 GNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (344), Expect = 6e-34
 Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 1/248 (0%)

Query: 109 LAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168
           L  LDL+ + L G IP  +    +L  L + +N L+G IP  +G   S+    L  N  +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
           G +P     L  +  L I +N   G I S   +  S+  L L+ N+F G +P  FG+   
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KR 476

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           L++L L  N  S  +   LG    L+ L+L+EN+ +G IP    +   L +L LS N+L 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348
           G IP    +M  LS LDL++NQ  G +P ++ N+ +L ++ + +NHL GS+P +   L +
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596

Query: 349 RELLLSGN 356
               ++GN
Sbjct: 597 NASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 54/94 (57%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
           L L+     G+IP     L  L ++ LS N + G+IP  +G + SL VLDL+ N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 316 PPSISNLTNLKELALLYNHLSGSIPPSLGNLILR 349
           P S+  LT+L+ L L  N LSG +P +LG  +L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
           +  L L    L G IP++I K+R L  ++L+ N  +G +PPS+ ++T+L+ L L YN  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 337 GSIPPSLGNL-ILRELLLSGNHFAGYLP 363
           GSIP SLG L  LR L L+GN  +G +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 35/89 (39%), Positives = 54/89 (60%)

Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
           L L   GL G IP ++  L HL+ + +  N + G+IPP +G ++S+EV  L  N  NGS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIG 200
           P SLG L+ + +L +  N  SG +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 31/78 (39%), Positives = 44/78 (56%)

Query: 423 IDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEI 482
           + L      G I ++  K   L ++N+S N+I G IP  +G+ + L+ LDLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 483 PKELGKLNSLTKLILRGN 500
           P+ LG+L SL  L L GN
Sbjct: 483 PESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query: 243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLS 302
           I + + K + L  + L+ N   G IP S G++TSL  L LS N   GSIP+ +G++ SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 303 VLDLNENQFKGVLPPSI 319
           +L+LN N   G +P ++
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 11/117 (9%)

Query: 70  PCA-----WYGISC---NDAGR--VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGL 119
           PC      W G  C   +  G+  +  + L N GL G +     S    L  ++L+G+ +
Sbjct: 396 PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSI 454

Query: 120 FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLG 176
            G IPP +G ++ L+ L +  N  +GSIP  +GQL+S+ +  L  N L+G VP +LG
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKS 252
           GFIP+DI   + + +++LS N   G IP   G++++L+ L L  NS +  I  SLG+  S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 253 LIDLQLNENQFTGYIPRSFG 272
           L  L LN N  +G +P + G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 23/111 (20%)

Query: 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP 363
           L L+    +G +P  IS L +L+ + L  N + G+IPPSLG++                 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI----------------- 465

Query: 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL 414
                  +LE+  +S N F G+IP S+   TSL  ++LNGN+L+G +  AL
Sbjct: 466 ------TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 38/89 (42%), Positives = 47/89 (52%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           L L +    G IP     L +L+S+ L GNS+   I  SLG   SL  L L+ N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIG 296
           P S G LTSL  L L+ N L G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 32/82 (39%), Positives = 47/82 (57%)

Query: 167 LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226
           L G +P  +  L H+  + +  N   G IP  +G+  S+  LDLS N F+G IP   G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 227 SNLKSLYLYGNSLSSPILSSLG 248
           ++L+ L L GNSLS  + ++LG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 399 VHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI 458
           + L+   L G I   ++   +L  I+LS N+  G I  + G    L+ L++S N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 459 PREIGNSSQLQALDLSLNHIVGEIPKELG 487
           P  +G  + L+ L+L+ N + G +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 18/249 (7%)

Query: 237 NSLSSPILSSLGKFKSLIDLQ------LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290
           + LS   +SSL   ++L++L       LN N+    I      LT+L++L L  N +   
Sbjct: 73  DLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNIT-D 130

Query: 291 IPDEIGKMRS-LSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-IL 348
           IP  IG ++S L  LDL++N+ +  LP  + NL NLK L L +N LS  +P  L NL  L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
             L LSGN  +  LP  I    ALE   +S N     + +S+ N  +L  + L+ N L  
Sbjct: 189 NNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE- 245

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI-GNSSQ 467
           ++ E++    NL  +DLS N       S+ G    L  L++S N+++  +P         
Sbjct: 246 DLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Query: 468 LQALDLSLN 476
              L+L L 
Sbjct: 304 ELLLNLLLT 312

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 32 PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCN 79
           N++ D LL +K+SL       L SW  ++++      PC+W G++C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSD------PCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 81  AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDT 140
           + R+ N+ L     SG +      S   L  L L+ + L G IP E+     L  L +  
Sbjct: 474 SKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 141 NKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPS 197
           N+L G IP    ++  +    L  N L+G +P +LGN+  +  + I  N   G +PS
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 47/81 (58%)

Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP 442
           +G IP  +     L  ++L+GN++ GNI  +L    +L  +DLS N+F G I  + G+  
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 443 KLDTLNVSMNNITGGIPREIG 463
            L  LN++ N+++G +P  +G
Sbjct: 491 SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 12/253 (4%)

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
           +P S   L SL  L  S         + +  +  L  LDLN N+ +  +   +  LTNL 
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENLLNLL-PLPSLDLNLNRLRSNISE-LLELTNLT 119

Query: 327 ELALLYNHLSGSIPPSLGNLI--LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
            L L  N+++  IPP +G L   L+EL LS N     LP  +     L+   +S N    
Sbjct: 120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS- 176

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
            +P  + N ++L  + L+GN ++ ++   + +   L  +DLS NN   E+ S+      L
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS-NNSIIELLSSLSNLKNL 234

Query: 445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504
             L +S N +   +P  IGN S L+ LDLS N I       LG L +L +L L GN  + 
Sbjct: 235 SGLELSNNKLED-LPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSN 291

Query: 505 TLSFINKVCSSLE 517
            L  I  +   LE
Sbjct: 292 ALPLIALLLLLLE 304

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 10/212 (4%)

Query: 122 TIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181
           ++P  +  L +LK L +  N L   +P  +  LS++    L  N ++  +PP +  LS +
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241
             L + +N     + S + N K++  L+LS+N+    +P   GNLSNL++L L  N +SS
Sbjct: 212 EELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269

Query: 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSL 301
             +SSLG   +L +L L+ N  +  +P     L  L  L    N L      E+     L
Sbjct: 270 --ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELL---LNLLLTLKALELKLNSIL 324

Query: 302 SVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
              ++  N      P ++S L +L  L  L N
Sbjct: 325 LNNNILSNGE-TSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 360 GYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419
           G++P +I +   L+   +S N  +G IP S+ + TSL  + L+ N+  G+I E+L    +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 420 LTFIDLSRNNFYGEISSNWGKCPKLDT-LNVSMNNITGGIP 459
           L  ++L+ N+  G + +  G         N + N    GIP
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 276 SLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNH 334
           +L +L LS N L   IPD     + +L VLDL+ N    + P + S L +L+ L L  N+
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 335 L 335
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 65/255 (25%), Positives = 92/255 (36%), Gaps = 46/255 (18%)

Query: 276 SLSTLRLSKNEL------FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT---NLK 326
           SL  L LS NE         S+   + K   L  LDL++N         + +L    +L+
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 327 ELALLYNHLSGSI-----------PPSLGNLILRELLLSGN---HFAGYLPYNICQGGAL 372
           EL L  N L               PP+L  L+L    L G      A  L  N      L
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN----RDL 167

Query: 373 EIFTVSENHFQGT-IPTSVR----NCTSLIRVHLNGNNLT----GNISEALAIYPNLTFI 423
           +   ++ N      I         NC +L  + LN N LT      ++E LA   +L  +
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 424 DLSRNNFYGEI-----SSNWGKCPKLDTLNVSMNNIT--GGIP--REIGNSSQLQALDLS 474
           +L  NN          S+       L TL++S N+IT  G       +     L  LDL 
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286

Query: 475 LNHIVGEIPKELGKL 489
            N    E  + L + 
Sbjct: 287 GNKFGEEGAQLLAES 301

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
PLN03150	623	hypothetical protein; Provisional	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.59
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.72
KOG4341	483	consensus F-box protein containing LRR [General fu	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.1
KOG4341	483	consensus F-box protein containing LRR [General fu	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.96
KOG4308	478	consensus LRR-containing protein [Function unknown	93.94
KOG4308	478	consensus LRR-containing protein [Function unknown	93.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.16
smart00370	26	LRR Leucine-rich repeats, outliers.	80.49
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.49

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-59  Score=523.97  Aligned_cols=477  Identities=35%  Similarity=0.586  Sum_probs=300.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcE
Q 037558           32 PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAY  111 (518)
Q Consensus        32 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~  111 (518)
                      .++|++||++||+.+.+ +.+.+.+|+..       .+||.|.|++|+..++|+.|+++++++.|.++. .+..+++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~~~-------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSIND-PLKYLSNWNSS-------ADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-CcccCCCCCCC-------CCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCE
Confidence            55899999999999964 66677899765       689999999998878999999999999988876 7889999999


Q ss_pred             EeCCCCCCcccCCcccc-CCCCCCEEECCCCCCCcCCC----------------------ccCCCCCCCcEEEccCCCCC
Q 037558          112 LDLTGSGLFGTIPPEVG-LLSHLKFLFIDTNKLDGSIP----------------------PEVGQLSSMEVFFLCSNYLN  168 (518)
Q Consensus       112 L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p----------------------~~l~~l~~L~~L~L~~n~~~  168 (518)
                      |+|++|.+.+.+|..+. .+++|++|++++|.+++.+|                      ..++++++|++|++++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            99999998888876654 67777777777776665444                      33444444444444444444


Q ss_pred             ccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccccccc
Q 037558          169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG  248 (518)
Q Consensus       169 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  248 (518)
                      +.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..++
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            44444444444444444444444444444444444555555555544444444445555555555555555444455555


Q ss_pred             CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCee
Q 037558          249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL  328 (518)
Q Consensus       249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  328 (518)
                      ++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            55555555555555554455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccc
Q 037558          329 ALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT  407 (518)
Q Consensus       329 ~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  407 (518)
                      ++++|.+.+.+|..+.. .+|+.|++++|.+.+.+|..++..++++.+++++|.+.+.+|..+..+++|+.|++++|+++
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            55555555555544433 45555666555555555555555455555555555555455555555555555555555555


Q ss_pred             cccChhhhCCCCCCEEecccCccccccCccccC-----------------------CCCCCEEEccCCccccCccccccC
Q 037558          408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGK-----------------------CPKLDTLNVSMNNITGGIPREIGN  464 (518)
Q Consensus       408 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------~~~L~~L~ls~n~l~~~~~~~~~~  464 (518)
                      +.+|..+..+++|+.|++++|.+.+.++..+..                       .++|+.|++++|++.+.+|..+..
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence            555555555555555555555444433332222                       345666666667776777777777


Q ss_pred             CCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558          465 SSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       465 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      +++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS  550 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence            88888888888888888888888888888888888888888888888777775

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-52  Score=467.88  Aligned_cols=432  Identities=34%  Similarity=0.536  Sum_probs=267.6

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.|.+|.   ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|+
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             CCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence            4677888888877776653   3466777777777777767777777777777777777777666777777777777777


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS  241 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (518)
                      +++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            77777766667777777777777777777766666667777777777777777666666666666677777776666666


Q ss_pred             cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558          242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN  321 (518)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  321 (518)
                      ..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666555555555


Q ss_pred             CCCCCeeecccccccccCCccccc-------------------------ccCcEEEccCccCcccCchhhcCCCCccEEe
Q 037558          322 LTNLKELALLYNHLSGSIPPSLGN-------------------------LILRELLLSGNHFAGYLPYNICQGGALEIFT  376 (518)
Q Consensus       322 l~~L~~L~l~~n~l~~~~p~~~~~-------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  376 (518)
                      +++|+.|++++|.+++.+|..+..                         ++|+.|++++|.+.+.+|..+..+++|+.++
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            566666666665555544443322                         3444444444444444444444444444444


Q ss_pred             cCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcccc
Q 037558          377 VSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG  456 (518)
Q Consensus       377 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  456 (518)
                      +++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+.+
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence            44444444444444444444444444444433333322 22445555555555555555555566666666666666666


Q ss_pred             CccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558          457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       457 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      .+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+.++++|+
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence            6666666666666666666666666666666666666666666666666666655555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-39  Score=308.65  Aligned_cols=367  Identities=23%  Similarity=0.225  Sum_probs=312.4

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      .-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|...-.+.++.++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            6678999999999888889999999999999999998 899888888889999999999987666778889999999999


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI  267 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (518)
                      .|.++..--..|..-.++++|+|++|.++......|.++.+|.+|.++.|+++...+..|.++++|+.|++..|++...-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            99999776677888889999999999999888888999999999999999999977788888999999999999988554


Q ss_pred             cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-c
Q 037558          268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-L  346 (518)
Q Consensus       268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~  346 (518)
                      --.|.++++|+.|.+..|.+...-...|..+.++++|+++.|++......++.++..|+.|++++|.+...-+..+.. .
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            567889999999999999988666677888999999999999998777778889999999999999998777777766 7


Q ss_pred             cCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccC---hhhhCCCCCCEE
Q 037558          347 ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNIS---EALAIYPNLTFI  423 (518)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L  423 (518)
                      +|+.|+++.|.+....+..+..+..|++|.++.|.++..--..|..+++|++|+|++|.+...+.   ..|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            88888888888888888888888888888888888875555566778888888888888876554   456678888888


Q ss_pred             ecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558          424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN  476 (518)
Q Consensus       424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  476 (518)
                      ++.+|++.......|.++++|++|||.+|.|...-|.+|..+ .|++|-++.-
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            888888876666677888888888888888887777788777 7777766543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-38  Score=302.12  Aligned_cols=369  Identities=23%  Similarity=0.214  Sum_probs=320.6

Q ss_pred             CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcc
Q 037558          132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS  211 (518)
Q Consensus       132 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  211 (518)
                      .-+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4577999999999888888999999999999999998 788877777889999999999998888889999999999999


Q ss_pred             cCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC
Q 037558          212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI  291 (518)
Q Consensus       212 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  291 (518)
                      .|.++..-...|..-.++++|++++|.|+......|..+.+|..|.++.|+++...+..|..+++|+.|++..|++.-.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            99998666667777788999999999999988889999999999999999999766677888999999999999987333


Q ss_pred             ccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCC
Q 037558          292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGG  370 (518)
Q Consensus       292 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~  370 (518)
                      --.|.++++|+.|.+..|.+.......|..+.++++|+|..|+++..-..++.. +.|+.|+++.|.|...-+..+.-++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            456888999999999999998777778889999999999999988655555544 8899999999999988888888889


Q ss_pred             CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccC---ccccCCCCCCEE
Q 037558          371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS---SNWGKCPKLDTL  447 (518)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L  447 (518)
                      +|++|+++.|+++...+..|..+..|++|.|+.|.++..-..+|..+.+|++|||++|.++..+.   ..|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            99999999999997778888889999999999999987777888899999999999999886653   346778999999


Q ss_pred             EccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558          448 NVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       448 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      ++.+|++......+|..++.|+.|||.+|.+-.+-|.+|..+ .|++|-+..-+|
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            999999986556788999999999999999998889999888 888887654443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-39  Score=293.61  Aligned_cols=404  Identities=28%  Similarity=0.389  Sum_probs=285.8

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      ..+.++++++++.. .|+ .+.++..++.++.++|++ ..+|..++.+.+|+.+++++|.+. .+|+.++.+..|+.++.
T Consensus        69 ~l~vl~~~~n~l~~-lp~-aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   69 CLTVLNVHDNKLSQ-LPA-AIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             ceeEEEeccchhhh-CCH-HHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            45666666666653 333 566677777777777766 356677777777777777777777 67777777777777777


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP  242 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (518)
                      .+|++. ..|..+..+.+|..+++.+|++....|..+. ++.|++||...|.+. .+|..++.+.+|..|++..|++.. 
T Consensus       145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-  220 (565)
T KOG0472|consen  145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-  220 (565)
T ss_pred             cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-
Confidence            777777 6677777777777777777777755444444 788888888877776 677778888888888888888765 


Q ss_pred             ccccccCCCCCCEeeCcCCCCccCCccccc-CCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558          243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFG-NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN  321 (518)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  321 (518)
                      .| .|..+..|.++.++.|++. .+|.... .++++..|+++.|++. +.|+.+..+.+|+.||+++|.++ ..|..+++
T Consensus       221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence            44 6788888888888888877 4555444 7888888888888887 78888888888888888888888 56778888


Q ss_pred             CCCCCeeecccccccc-------------------------------------cCCcccc-----cccCcEEEccCccCc
Q 037558          322 LTNLKELALLYNHLSG-------------------------------------SIPPSLG-----NLILRELLLSGNHFA  359 (518)
Q Consensus       322 l~~L~~L~l~~n~l~~-------------------------------------~~p~~~~-----~~~L~~L~l~~n~~~  359 (518)
                      + .|+.|-+.+|.+..                                     ..|....     ....+.|++++-+++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            8 88888888776531                                     0010000     023455555555444


Q ss_pred             ccCchhhcCCCC---ccEEecCCCcCc-----------------------cccChhhhcCCCCcEEEcccCccccccChh
Q 037558          360 GYLPYNICQGGA---LEIFTVSENHFQ-----------------------GTIPTSVRNCTSLIRVHLNGNNLTGNISEA  413 (518)
Q Consensus       360 ~~~~~~~~~~~~---L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  413 (518)
                      . +|.......+   ....++++|++.                       +-+|..++.+++|..|++++|-+. .+|..
T Consensus       376 ~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e  453 (565)
T KOG0472|consen  376 L-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE  453 (565)
T ss_pred             c-CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence            2 3333222222   445555555543                       234445566777777777777666 55666


Q ss_pred             hhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 037558          414 LAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLT  493 (518)
Q Consensus       414 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  493 (518)
                      ++.+..|++|+++.|+|. ..|..+.....++.+-.++|++....|..+.++.+|..||+.+|.+. .+|..+++|.+|+
T Consensus       454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR  531 (565)
T ss_pred             hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence            666777777777777776 56666666666666666777777555566889999999999999998 8889999999999


Q ss_pred             EEECcCCccc
Q 037558          494 KLILRGNQRA  503 (518)
Q Consensus       494 ~L~l~~n~~~  503 (518)
                      .|+++||+|.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            9999999996

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=5.1e-36  Score=289.43  Aligned_cols=383  Identities=24%  Similarity=0.359  Sum_probs=256.6

Q ss_pred             CEEEEEcCCCCCcc-ccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           83 RVINISLRNTGLSG-TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        83 ~v~~l~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      -|+.+|+++|.++| .+|. +..+++.++.|.|...++ ..+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus         8 FVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCch-hHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            46667777777774 3444 666777777777766666 356677777777777777777765 4555666677777777


Q ss_pred             ccCCCCC-ccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558          162 LCSNYLN-GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS  240 (518)
Q Consensus       162 L~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  240 (518)
                      ++.|++. .-+|..+.++..|.+|++++|++. ..|..+...+++-.|++++|++..+....+.+++.|-.|++++|++.
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            7776653 245666666777777777777665 45666666666667777777666333334456666666666666665


Q ss_pred             ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc-ccCccccCCCCCccEEEccCCcccccCCccC
Q 037558          241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF-GSIPDEIGKMRSLSVLDLNENQFKGVLPPSI  319 (518)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l  319 (518)
                      . +|+.+..+.+|+.|++++|.+...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|..+
T Consensus       164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  164 M-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             h-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence            4 5555666666666666666554322233344555666666655432 235555666666666666666665 556666


Q ss_pred             cCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEE
Q 037558          320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV  399 (518)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  399 (518)
                      ..+++|+.|++++|.++.                       . .-......+|++|+++.|+++ .+|++++++++|+.|
T Consensus       242 y~l~~LrrLNLS~N~ite-----------------------L-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITE-----------------------L-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhheeccCcCceee-----------------------e-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            666666666666665542                       1 011222357888888888888 788999999999999


Q ss_pred             EcccCcccc-ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcC
Q 037558          400 HLNGNNLTG-NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI  478 (518)
Q Consensus       400 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  478 (518)
                      ...+|+++- -+|..++.+.+|+.+..++|.+. .+|..+..|..|+.|.|+.|.+. .+|+.+.-++.|++||+..|+-
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            999998873 47888899999999999999887 78888999999999999999988 7899999999999999999976


Q ss_pred             cccCCccccCCCCCCEEECc
Q 037558          479 VGEIPKELGKLNSLTKLILR  498 (518)
Q Consensus       479 ~~~~~~~l~~l~~L~~L~l~  498 (518)
                      .-.-|.--..-++|+.-++.
T Consensus       375 LVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  375 LVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             ccCCCCcchhhhcceeeecc
Confidence            63333222222455555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=1.5e-36  Score=279.12  Aligned_cols=382  Identities=25%  Similarity=0.353  Sum_probs=303.0

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      ....++++++++.. +|+ .+..+.+++.++++.|.+. ++++.++.+..|..++..+|++. ..|..+..+.+|..+++
T Consensus        92 ~l~~l~vs~n~ls~-lp~-~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~  167 (565)
T KOG0472|consen   92 ALKSLNVSHNKLSE-LPE-QIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL  167 (565)
T ss_pred             HHHHhhcccchHhh-ccH-HHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence            34567778777763 555 6888899999999999884 57778999999999999999998 78888999999999999


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP  242 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (518)
                      .+|.+. .+|+..-+++.|++++..+|-+. .+|..++.+.+|+-|++..|++. ..| .|.++..|++++++.|.+.-.
T Consensus       168 ~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l  243 (565)
T KOG0472|consen  168 EGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML  243 (565)
T ss_pred             cccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh
Confidence            999888 44444444888888888888765 66778888888888888888887 556 688888888888888887764


Q ss_pred             ccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc--------
Q 037558          243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV--------  314 (518)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--------  314 (518)
                      .......+.++..||+..|++. ..|+.+..+.+|.+|++++|.++ .+|..++++ .|++|.+.+|.+...        
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g  320 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG  320 (565)
T ss_pred             HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence            3444557788888888888888 57888888888888888888887 577778888 888888888765310        


Q ss_pred             -----------------------------CC-c---cCcCCCCCCeeecccccccccCCccc-cc---ccCcEEEccCcc
Q 037558          315 -----------------------------LP-P---SISNLTNLKELALLYNHLSGSIPPSL-GN---LILRELLLSGNH  357 (518)
Q Consensus       315 -----------------------------~~-~---~l~~l~~L~~L~l~~n~l~~~~p~~~-~~---~~L~~L~l~~n~  357 (518)
                                                   .+ .   ......+.+.|++++-+++ .+|... ..   .-++..+++.|+
T Consensus       321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNq  399 (565)
T KOG0472|consen  321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQ  399 (565)
T ss_pred             HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccch
Confidence                                         00 0   1122345677777777776 444432 22   225666666654


Q ss_pred             C-----------------------cccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhh
Q 037558          358 F-----------------------AGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL  414 (518)
Q Consensus       358 ~-----------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  414 (518)
                      +                       .+.+|..++.++++..|++++|.+. .+|..++.+..|+.|+++.|++. .+|.++
T Consensus       400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHH
Confidence            3                       3466777888999999999999887 78999999999999999999988 778888


Q ss_pred             hCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          415 AIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       415 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      ..+..++.+-.++|++....++.+.++.+|.+||+.+|.+. .+|..+++|.+|++|++.+|++.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88888888888999999777777999999999999999998 78999999999999999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-34  Score=280.38  Aligned_cols=339  Identities=27%  Similarity=0.389  Sum_probs=261.6

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCc-CCCccCCCCCCCcE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG-SIPPEVGQLSSMEV  159 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~  159 (518)
                      ..+++-+.|...++. .+|+ .++.+.+|++|++++|++.. +...++.++.||.+.+.+|++.. -+|..+.++..|..
T Consensus        31 Mt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             hhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence            457788888887776 4666 79999999999999999854 45568899999999999999864 58999999999999


Q ss_pred             EEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcC
Q 037558          160 FFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       160 L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  239 (518)
                      |||++|++. +.|..+..-+++-+|++++|+|..+...-+.+++.|-.||+++|++. .+|..+..+..|++|.+++|++
T Consensus       108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            999999998 88999999999999999999998665556779999999999999998 7788899999999999999998


Q ss_pred             CccccccccCCCCCCEeeCcCCCCc-cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCcc
Q 037558          240 SSPILSSLGKFKSLIDLQLNENQFT-GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS  318 (518)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  318 (518)
                      ...-...+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|+++ .+...
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~  263 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT  263 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence            8766667777889999999987643 478899999999999999999987 89999999999999999999998 45556


Q ss_pred             CcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCccc-CchhhcCCCCccEEecCCCcCccccChhhhcCCCC
Q 037558          319 ISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGY-LPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSL  396 (518)
Q Consensus       319 l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  396 (518)
                      .+...+|+.|+++.|+++ .+|..... +.|+.|...+|++.-. +|..++.+.+|+.+...+|.+. .+|+.+++|..|
T Consensus       264 ~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  264 EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence            677788999999999888 45554433 5555555555554322 4444455555555555555443 445555555555


Q ss_pred             cEEEcccCccccccChhhhCCCCCCEEecccCc
Q 037558          397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN  429 (518)
Q Consensus       397 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  429 (518)
                      +.|.|+.|++- .+|+++.-++.|+.||+.+|.
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            55555555444 344444444555555554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-32  Score=277.79  Aligned_cols=398  Identities=27%  Similarity=0.342  Sum_probs=246.9

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      ++..|+++++.+. .+|. .+..+++|+.|+++.|.+ ..+|.+..++++|+++.|.+|.+. .+|..+..+++|++|++
T Consensus        46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence            3677888877665 3444 577788888888888876 356677888888888888888777 78888888888888888


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCc-------------------cccccCCccccCCCCCcEEEcccCcCCCCcchhc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDN-------------------LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF  223 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n-------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  223 (518)
                      +.|.+. .+|..+..+..+..+..++|                   .+.+.++..+..+..  .|++.+|.+..   ..+
T Consensus       122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dl  195 (1081)
T KOG0618|consen  122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDL  195 (1081)
T ss_pred             chhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhh
Confidence            888876 56665555555444444444                   333333333333333  35555555441   112


Q ss_pred             cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558          224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV  303 (518)
Q Consensus       224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  303 (518)
                      ..+.+|+.|....|.++...    -.-++++.|+.+.|.+....+  -....+|+++++++|+++ .+|+|+..+.+|+.
T Consensus       196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEA  268 (1081)
T ss_pred             hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceE
Confidence            22233333333322222100    001233333333333331111  112344555555555554 34455555555555


Q ss_pred             EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc-cccCcEEEccCccCc-----------------------
Q 037558          304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG-NLILRELLLSGNHFA-----------------------  359 (518)
Q Consensus       304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~-----------------------  359 (518)
                      ++..+|.+. .+|..+....+|+.+.+..|.+. .+|.... ...+++|++..|++.                       
T Consensus       269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            555555553 34444444444444444444444 2333222 244444444444433                       


Q ss_pred             --ccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558          360 --GYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN  437 (518)
Q Consensus       360 --~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  437 (518)
                        ......-...+.|+.|.+.+|.+++..-..+.++++|+.|+|+.|++.......+.+++.|+.|+||+|+++ .+|..
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence              222111122345788888899888777667788899999999999998777778889999999999999998 67788


Q ss_pred             ccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558          438 WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       438 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      +.+++.|++|...+|++. .+| .+.++++|+.+|++.|+++.........-+.|++||++||.-
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            889999999999999988 777 788999999999999998764433333338999999999984

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-32  Score=273.06  Aligned_cols=399  Identities=25%  Similarity=0.293  Sum_probs=301.2

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      +++.++++.|.+-....+ ...+.-+|+.|++++|.+ +.+|..+..+++|+.|+++.|.+. ..|...+++.+|+++.|
T Consensus        22 ~~~~ln~~~N~~l~~pl~-~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLE-FVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHHhhhccccccccCchH-HhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence            366677776654432222 333444599999999987 567888999999999999999988 78888999999999999


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccC-------------------cCCCCcchhc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN-------------------QFSGPIPLFF  223 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-------------------~~~~~~~~~l  223 (518)
                      .+|.+. ..|..+..+++|++|++++|++. .+|..+..+..++.+..++|                   .+.+.++..+
T Consensus        99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen   99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence            998887 88999999999999999999887 44555555555555555555                   3333333333


Q ss_pred             cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558          224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV  303 (518)
Q Consensus       224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  303 (518)
                      ..+..  .|++.+|.+.   ...+..+.+|+.+....|++...    .-.-++++.|+.++|.++...+.  ....+|++
T Consensus       177 ~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~  245 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQY  245 (1081)
T ss_pred             hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--ccccccee
Confidence            33332  3555555543   12344445555555555554421    11346788888888887733332  23468999


Q ss_pred             EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558          304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ  383 (518)
Q Consensus       304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  383 (518)
                      +++++|.+. .+|.+++.+.+|+.+...+|.++......+...+++.|....|++. .+|......+.|+.|++..|.+.
T Consensus       246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             eecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence            999999999 6779999999999999999999743334444588999999999876 45556777899999999999886


Q ss_pred             cccChhhh--------------------------cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558          384 GTIPTSVR--------------------------NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN  437 (518)
Q Consensus       384 ~~~~~~~~--------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  437 (518)
                       ..|+.+.                          .++.|+.|++.+|.+++.....+.++.+|+.|+|++|++.......
T Consensus       324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~  402 (1081)
T KOG0618|consen  324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK  402 (1081)
T ss_pred             -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence             3443221                          2345778889999999888888899999999999999998666667


Q ss_pred             ccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccc
Q 037558          438 WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRA  503 (518)
Q Consensus       438 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  503 (518)
                      +.+++.|++|++|+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|++.
T Consensus       403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            889999999999999999 78899999999999999999998 777 8999999999999999986

>PLN03210 Resistant to P

Probab=99.94  E-value=5.7e-25  Score=246.13  Aligned_cols=338  Identities=23%  Similarity=0.248  Sum_probs=198.3

Q ss_pred             CccccCCCCCCEEECCCCC------CCcCCCccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCC
Q 037558          124 PPEVGLLSHLKFLFIDTNK------LDGSIPPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIP  196 (518)
Q Consensus       124 ~~~~~~l~~L~~L~l~~n~------~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  196 (518)
                      +.+|..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            3457778888888876543      2234666666654 5888888877765 666666 4577888888887776 345


Q ss_pred             ccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCC
Q 037558          197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS  276 (518)
Q Consensus       197 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  276 (518)
                      ..+..+++|++|+++++.....+|. +..+++|+.|++++|..-..+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            6677778888888877665445554 6677788888887776656677777777788888887765444566544 5777


Q ss_pred             CcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccc---c----CCccc-ccccC
Q 037558          277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG---S----IPPSL-GNLIL  348 (518)
Q Consensus       277 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~----~p~~~-~~~~L  348 (518)
                      |+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|+.|.+.++....   .    .+... ..++|
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            888888777655455542   356777777777765 455443 45677777666533210   0    00000 11345


Q ss_pred             cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558          349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN  428 (518)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  428 (518)
                      +.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..   .++|+.|+|++|
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n  856 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT  856 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence            555555555555555555555555555555553333444433 3455555555554332222221   234555555555


Q ss_pred             ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558          429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN  476 (518)
Q Consensus       429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  476 (518)
                      .+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            554 34444455555555555554333344444445555555555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.94  E-value=9.5e-25  Score=244.34  Aligned_cols=357  Identities=20%  Similarity=0.229  Sum_probs=241.6

Q ss_pred             CEEEEEcCCCCCcc-ccCCccCCCCCCCcEEeCCCCC------CcccCCccccCCC-CCCEEECCCCCCCcCCCccCCCC
Q 037558           83 RVINISLRNTGLSG-TLHGFSFSSFPRLAYLDLTGSG------LFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQL  154 (518)
Q Consensus        83 ~v~~l~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~------~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l  154 (518)
                      +|..|.+....+.. .+....|.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+ ..
T Consensus       533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~  610 (1153)
T PLN03210        533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RP  610 (1153)
T ss_pred             eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Cc
Confidence            45555544333221 2333357778888888876543      2233566666654 5888888887776 677766 46


Q ss_pred             CCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEc
Q 037558          155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYL  234 (518)
Q Consensus       155 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  234 (518)
                      .+|++|++++|.+. .++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            78888888888776 567777778888888888776555555 3777788888888887766677777888888888888


Q ss_pred             ccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc--
Q 037558          235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK--  312 (518)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--  312 (518)
                      ++|..-..+|..+ ++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|++.++...  
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence            8775545455544 6778888888887655455542   356788888888765 566544 4677777777664321  


Q ss_pred             -----ccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcccc
Q 037558          313 -----GVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTI  386 (518)
Q Consensus       313 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  386 (518)
                           ...+.....+++|+.|++++|...+.+|..+.. ++|+.|++++|...+.+|... .+++|+.|++++|.....+
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                 111112233467888888888776677776655 778888888877666666554 5678888888887554444


Q ss_pred             ChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcc
Q 037558          387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI  454 (518)
Q Consensus       387 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  454 (518)
                      |..   ..+|+.|++++|.++ .+|.++..+++|++|++++|+-...+|.....+++|+.+++++|.-
T Consensus       842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            432   357788888888877 5677778888888888887654445666667778888888888753

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=9.8e-25  Score=201.20  Aligned_cols=273  Identities=25%  Similarity=0.290  Sum_probs=186.0

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCC-CCCCcCCCccCCCCCCCcEEE
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDT-NKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      ..++|+|..|++.. +|+..|..+++||.|||++|.++..-|++|..+++|..|-+.+ |+|+...-..|+++..|+.|.
T Consensus        68 ~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            67888888888874 4444888999999999999988888888888888887777665 788844445588888999988


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCC------------CCcchhccCCCCC
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS------------GPIPLFFGNLSNL  229 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~------------~~~~~~l~~l~~L  229 (518)
                      +.-|++.-.....|..+++|..|.+.+|.+...-...+..+..++++.+..|.+-            ...|..++...-.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            8888887666677888888888888888887655557888888888888877632            1112222222222


Q ss_pred             cEEEcccCcCCccccccccCCCCCCEe--eC-cCCCCccCCc-ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558          230 KSLYLYGNSLSSPILSSLGKFKSLIDL--QL-NENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD  305 (518)
Q Consensus       230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L--~l-~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  305 (518)
                      .-..+.+.++.......|...  ++.+  .+ +.+...+..| ..|..+++|+.|++++|+++++-+.+|.+...+++|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             chHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            333333333333222222211  1111  11 1222222333 3467778888888888888877777787788888888


Q ss_pred             ccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccC
Q 037558          306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHF  358 (518)
Q Consensus       306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~  358 (518)
                      +..|++...-...|.++..|+.|++++|+++...|..|.. ..|.+|.+-.|++
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            8888877555556777778888888888887666666665 6677777777655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.9e-21  Score=200.66  Aligned_cols=264  Identities=24%  Similarity=0.300  Sum_probs=157.0

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558          180 HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN  259 (518)
Q Consensus       180 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  259 (518)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|.++. +|.   ..++|++|++++|.++. +|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            4567788888777 4566554  367888888888773 443   24677888888887775 3432   2467777777


Q ss_pred             CCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccC
Q 037558          260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI  339 (518)
Q Consensus       260 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  339 (518)
                      +|.+.. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|.+.+ +|..   ..+|+.|++++|.+++ +
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            777663 3432   245777777777776 44532   3667777777777773 3432   2356677777777763 4


Q ss_pred             CcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCC
Q 037558          340 PPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN  419 (518)
Q Consensus       340 p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  419 (518)
                      |..  ..+|+.|++++|++.+ +|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|++++ +|..   .++
T Consensus       338 P~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        338 PTL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             ccc--ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            432  2456677777776664 2221   235566666666665 34432   2456666666666663 2221   245


Q ss_pred             CCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558          420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL  486 (518)
Q Consensus       420 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  486 (518)
                      |+.|++++|++.+ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            6666666666653 3332   234556666666665 456556666666666666666665555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2.1e-20  Score=195.26  Aligned_cols=264  Identities=25%  Similarity=0.341  Sum_probs=186.5

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      .-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            4567888888887 6777665  478888888888874 343   24788888888888873 4532   4678888888


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccC
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL  315 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  315 (518)
                      +|.++. +|..+   .+|+.|++++|+++. +|.   .+++|+.|++++|++++ +|..   ..+|+.|++++|.+. .+
T Consensus       271 ~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        271 SNPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             CCchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence            888765 33322   467788888888873 444   24678888888888874 4542   245777888888887 35


Q ss_pred             CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCC
Q 037558          316 PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS  395 (518)
Q Consensus       316 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  395 (518)
                      |..   ..+|+.|++++|++++ +|..  ..+++.|++++|.+.+ +|..   ..+|+.|++++|.+.+ +|..   .++
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             ccc---ccccceEecCCCccCC-CCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            532   2478888888888873 5542  3567788888888774 4432   2468888888888873 5542   357


Q ss_pred             CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558          396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI  462 (518)
Q Consensus       396 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  462 (518)
                      |+.|++++|+++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            8888888888874 4432   246778888888887 667778888888888888888887766655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=3.3e-23  Score=191.16  Aligned_cols=276  Identities=19%  Similarity=0.165  Sum_probs=203.3

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC-CCCCccCCcCCcCCCCCCEEEc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS-NYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      .-.+++|..|+++..-+.+|+.+++||.|||++|.|+..-|+.|.++++|..|-+.+ |+|+......|.++..|+-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            677899999999877778899999999999999999988899999999987776666 8888555566899999999999


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC------------ccccccccCCCCCC
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS------------SPILSSLGKFKSLI  254 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L~  254 (518)
                      .-|++.-...+.+..+++|..|.+.+|.+.......|..+..++.+.+..|.+-            ...+..++......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            999988777888999999999999999988555557888889999988887632            11222333333333


Q ss_pred             EeeCcCCCCccCCcccccC-CCCCcEEEccCCcCcccCc-cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccc
Q 037558          255 DLQLNENQFTGYIPRSFGN-LTSLSTLRLSKNELFGSIP-DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY  332 (518)
Q Consensus       255 ~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  332 (518)
                      -..+.+.++...-+..|.. +..+.+=-.+.+...++.| ..|..+++|++|++++|++++.-+.+|.....+++|.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            3344444443333333321 1222221222232333444 4578889999999999999988888898999999999999


Q ss_pred             ccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558          333 NHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ  383 (518)
Q Consensus       333 n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  383 (518)
                      |++...-...|.. ..|++|++.+|+++...|..|.....|.+|++-.|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9887433333333 77888888888888888888888888888888777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=2.3e-19  Score=188.56  Aligned_cols=247  Identities=26%  Similarity=0.422  Sum_probs=175.4

Q ss_pred             CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558          131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL  210 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  210 (518)
                      .+...|+++++.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|++|++++|.++. +|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence            45677888887777 5676553  46888888888877 5565554  478888888887773 454443  46888888


Q ss_pred             ccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCccc
Q 037558          211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS  290 (518)
Q Consensus       211 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  290 (518)
                      ++|.+. .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++ .
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-A  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-c
Confidence            888877 5565543  478888888888875 555553  478888888888874 454432  46888888888887 4


Q ss_pred             CccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCC
Q 037558          291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGG  370 (518)
Q Consensus       291 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  370 (518)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+ .+.|+.|++++|.+.. +|..+.  .
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCCC-CCHhHH--H
Confidence            55443  3678888888888874 565443  68888899888887 455533 3578899999988874 444443  3


Q ss_pred             CccEEecCCCcCccccChhhh----cCCCCcEEEcccCccc
Q 037558          371 ALEIFTVSENHFQGTIPTSVR----NCTSLIRVHLNGNNLT  407 (518)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~  407 (518)
                      .|+.|++++|++. .+|..+.    .++.+..+++.+|.++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6888999999887 5565443    4578889999999887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.2e-19  Score=185.97  Aligned_cols=139  Identities=20%  Similarity=0.349  Sum_probs=69.2

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      +...|+++++.++ .+|..+.  ++|+.|++++|.++. +|..+.  ++|++|++++|.++ .+|..+.  ..|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4566777777666 4555443  366777777776663 343332  35666666666665 3343332  345555665


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      +|.+.. +|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.+.
T Consensus       250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        250 INRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence            555543 333332  24555555555554 2333322  24555555555444 2332221  23444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.1e-19  Score=177.36  Aligned_cols=273  Identities=25%  Similarity=0.295  Sum_probs=153.0

Q ss_pred             EEEcccCcCC-CCcchhccCCCCCcEEEcccCcCCcc----ccccccCCCCCCEeeCcCCCCcc------CCcccccCCC
Q 037558          207 NLDLSSNQFS-GPIPLFFGNLSNLKSLYLYGNSLSSP----ILSSLGKFKSLIDLQLNENQFTG------YIPRSFGNLT  275 (518)
Q Consensus       207 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~  275 (518)
                      .|+|..+.++ ......+..+..|++|+++++.++..    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666665 23344455666677777777776432    33344455567777776665541      1223344455


Q ss_pred             CCcEEEccCCcCcccCccccCCCCC---ccEEEccCCccccc----CCccCcCC-CCCCeeecccccccccCCccccccc
Q 037558          276 SLSTLRLSKNELFGSIPDEIGKMRS---LSVLDLNENQFKGV----LPPSISNL-TNLKELALLYNHLSGSIPPSLGNLI  347 (518)
Q Consensus       276 ~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~  347 (518)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|.+.+.    +...+..+ ++                       
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~-----------------------  138 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA-----------------------  138 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC-----------------------
Confidence            6666666665554333333333322   55555555554421    11122223 34                       


Q ss_pred             CcEEEccCccCccc----CchhhcCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccc----cChhhh
Q 037558          348 LRELLLSGNHFAGY----LPYNICQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALA  415 (518)
Q Consensus       348 L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~  415 (518)
                      ++.|++++|.+.+.    ++..+..+.+|+.|++++|.+.+.    ++..+..+++|+.|++++|.+++.    +...+.
T Consensus       139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~  218 (319)
T cd00116         139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA  218 (319)
T ss_pred             ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence            44445554444421    223344555667777777666532    223344556777777777777633    234455


Q ss_pred             CCCCCCEEecccCccccccCccc-----cCCCCCCEEEccCCcccc----CccccccCCCCCCEEeCcCCcCccc----C
Q 037558          416 IYPNLTFIDLSRNNFYGEISSNW-----GKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNHIVGE----I  482 (518)
Q Consensus       416 ~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~  482 (518)
                      .+++|++|++++|++.+.....+     ...+.|++|++++|.+++    .+...+..+++|+++++++|++...    +
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~  298 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL  298 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence            67778888888887764321111     124688888888887762    2334455667888888888888754    3


Q ss_pred             CccccCC-CCCCEEECcCCcc
Q 037558          483 PKELGKL-NSLTKLILRGNQR  502 (518)
Q Consensus       483 ~~~l~~l-~~L~~L~l~~n~~  502 (518)
                      ...+... +.|+++++.+|++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         299 AESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhhcCCchhhcccCCCCC
Confidence            3344444 6788888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1.6e-19  Score=176.18  Aligned_cols=277  Identities=21%  Similarity=0.226  Sum_probs=182.0

Q ss_pred             EEEccCccccc-cCCccccCCCCCcEEEcccCcCCCC----cchhccCCCCCcEEEcccCcCCc------cccccccCCC
Q 037558          183 LLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGP----IPLFFGNLSNLKSLYLYGNSLSS------PILSSLGKFK  251 (518)
Q Consensus       183 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~  251 (518)
                      .|+|..+.+++ .....+..+.+|++++++++.++..    ++..+...+.+++++++++.+.+      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            46777777763 4444566778899999999998643    45556678889999999988762      2345677788


Q ss_pred             CCCEeeCcCCCCccCCcccccCCCC---CcEEEccCCcCcc----cCccccCCC-CCccEEEccCCccccc----CCccC
Q 037558          252 SLIDLQLNENQFTGYIPRSFGNLTS---LSTLRLSKNELFG----SIPDEIGKM-RSLSVLDLNENQFKGV----LPPSI  319 (518)
Q Consensus       252 ~L~~L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~~~~l  319 (518)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999999998656655655555   9999999998873    233445566 8999999999998843    23345


Q ss_pred             cCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc----cChhhhcCCC
Q 037558          320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT----IPTSVRNCTS  395 (518)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~  395 (518)
                      ..+++|++|++++|.+.+....                   .++..+...++|+.|++++|.+.+.    ++..+..+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~  222 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIR-------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS  222 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHH-------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence            5666788888777776632111                   1111222334555555555544322    2234455677


Q ss_pred             CcEEEcccCccccccChhhh-----CCCCCCEEecccCcccc----ccCccccCCCCCCEEEccCCccccC----ccccc
Q 037558          396 LIRVHLNGNNLTGNISEALA-----IYPNLTFIDLSRNNFYG----EISSNWGKCPKLDTLNVSMNNITGG----IPREI  462 (518)
Q Consensus       396 L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~  462 (518)
                      |++|++++|++++.....+.     ..++|++|++++|.++.    .+...+..+++|+++++++|.+...    ....+
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            77777777777653222221     23678888888887752    1234455567888888888888743    33333


Q ss_pred             cCC-CCCCEEeCcCCcC
Q 037558          463 GNS-SQLQALDLSLNHI  478 (518)
Q Consensus       463 ~~l-~~L~~L~L~~n~l  478 (518)
                      ... +.|+++++.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            344 6788888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-18  Score=142.22  Aligned_cols=164  Identities=25%  Similarity=0.468  Sum_probs=93.3

Q ss_pred             CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558          103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS  182 (518)
Q Consensus       103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  182 (518)
                      +..+.+++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|++.-|.+. .+|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445556666666666663 34445666666666666666666 56666666666666666666665 5666666666666


Q ss_pred             EEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          183 LLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       183 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      +|++.+|.+.. ..|..|..+..|+.|.+++|.+. .+|..++++++|                        +.|.+..|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l------------------------qil~lrdn  160 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL------------------------QILSLRDN  160 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce------------------------eEEeeccC
Confidence            66666665543 34545555555555555555554 344444444444                        44444444


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCcccCccccC
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG  296 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~  296 (518)
                      .+. .+|..++.+..|++|++.+|+++ .+|..++
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            443 34555555555666666666555 3444333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3e-18  Score=140.95  Aligned_cols=160  Identities=30%  Similarity=0.527  Sum_probs=99.1

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      +++.|.+++|+++ .+|+.+..+.+|++|++.+|++. ..|.+++.+++|+.|++.-|++. ..|..|++++.|+.|++.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            3344444444443 34444444444444444444444 33444555555555555555554 556666666666666666


Q ss_pred             cCcCCc-cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc
Q 037558          236 GNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV  314 (518)
Q Consensus       236 ~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  314 (518)
                      +|+++. ..|..|..+..|+.|.+++|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|+++ .
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence            666553 34555666667777777777776 66777888888888888888776 67777888888888888888877 5


Q ss_pred             CCccCcC
Q 037558          315 LPPSISN  321 (518)
Q Consensus       315 ~~~~l~~  321 (518)
                      +|..++.
T Consensus       188 lppel~~  194 (264)
T KOG0617|consen  188 LPPELAN  194 (264)
T ss_pred             cChhhhh
Confidence            5555443

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=2e-14  Score=150.98  Aligned_cols=147  Identities=33%  Similarity=0.564  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCC-----ccCceeeCCC-----CCEEEEEcCCCCCccccC
Q 037558           30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPC-----AWYGISCNDA-----GRVINISLRNTGLSGTLH   99 (518)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c-----~w~g~~c~~~-----~~v~~l~l~~~~~~~~~~   99 (518)
                      +..++|.+||+++|+.+.. +.  ..+|.+         |+|     .|.|+.|...     ..|+.|+|+++.+.|.+|
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~~--~~~W~g---------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip  435 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-PL--RFGWNG---------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP  435 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-cc--cCCCCC---------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence            3456789999999998864 22  137864         344     7999999531     136667777666666666


Q ss_pred             CccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCC-
Q 037558          100 GFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL-  178 (518)
Q Consensus       100 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-  178 (518)
                      . .+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+... 
T Consensus       436 ~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        436 N-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL  514 (623)
T ss_pred             H-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence            5 56666666666666666666666666666666666666666666666666666666666666666666666555432 


Q ss_pred             CCCCEEEccCc
Q 037558          179 SHISLLFIYDN  189 (518)
Q Consensus       179 ~~L~~L~l~~n  189 (518)
                      .++..+++.+|
T Consensus       515 ~~~~~l~~~~N  525 (623)
T PLN03150        515 LHRASFNFTDN  525 (623)
T ss_pred             ccCceEEecCC
Confidence            23444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.24  E-value=4.3e-13  Score=123.18  Aligned_cols=198  Identities=26%  Similarity=0.319  Sum_probs=115.2

Q ss_pred             cCCCCCccEEEccCCcccccCCcc----CcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCC
Q 037558          295 IGKMRSLSVLDLNENQFKGVLPPS----ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGG  370 (518)
Q Consensus       295 ~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  370 (518)
                      +..++.|++++||+|.+....+..    +.++..|++|.|.+|.+...--..++ ..|..+.  .++.       ...-+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~kk-------~~~~~  157 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VNKK-------AASKP  157 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HHhc-------cCCCc
Confidence            344567777777777765444332    34566777777777765411000000 1111111  1111       12224


Q ss_pred             CccEEecCCCcCccc----cChhhhcCCCCcEEEcccCcccc----ccChhhhCCCCCCEEecccCccccc----cCccc
Q 037558          371 ALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTG----NISEALAIYPNLTFIDLSRNNFYGE----ISSNW  438 (518)
Q Consensus       371 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~  438 (518)
                      +|+++...+|.+...    +...+...+.|+.+.++.|.|..    .+...+..+++|+.|||++|.++..    +...+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            566666666665422    22344556777777777776652    2345667778888888888877633    23345


Q ss_pred             cCCCCCCEEEccCCccccCccc----cc-cCCCCCCEEeCcCCcCccc----CCccccCCCCCCEEECcCCcc
Q 037558          439 GKCPKLDTLNVSMNNITGGIPR----EI-GNSSQLQALDLSLNHIVGE----IPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       439 ~~~~~L~~L~ls~n~l~~~~~~----~~-~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      ..+++|+.|++++|.+...-..    .+ ...++|++|++.+|.++..    +..++...+.|++|+|++|.+
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            5677788888888877643222    22 2467888888888877642    223445678888888888887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=3.6e-11  Score=120.79  Aligned_cols=198  Identities=35%  Similarity=0.526  Sum_probs=100.4

Q ss_pred             EEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCC-CCCEEEccCccccccCCccccCCCCCcEEEcccC
Q 037558          135 FLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLS-HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN  213 (518)
Q Consensus       135 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  213 (518)
                      .+++..+.+. ..+..+..+..++.|++.+|.+. .++.....+. +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            3444444442 12222333345555555555554 3444444442 55555555555542 2234555555555555555


Q ss_pred             cCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCcc
Q 037558          214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD  293 (518)
Q Consensus       214 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  293 (518)
                      ++. .++......+.|+.|++++|.+.. +|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. .++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            555 233333345555555555555544 3333333344566666655322 23344555666666666666554 2345


Q ss_pred             ccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc
Q 037558          294 EIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP  341 (518)
Q Consensus       294 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  341 (518)
                      .++.+++++.|++++|.++.. +. ++...+++.|+++++.+....|.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence            555666666666666666632 22 55666666666666666544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.4e-12  Score=114.05  Aligned_cols=134  Identities=28%  Similarity=0.283  Sum_probs=98.2

Q ss_pred             cCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCE
Q 037558          367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT  446 (518)
Q Consensus       367 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  446 (518)
                      .....|+++|+++|.++ .+.+++.-.+.++.|+++.|.+...  +.+..+++|+.|||++|.++.. ..+-..+-+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence            33456788888888776 5666677778888888888888744  3377788888888888887632 233345678888


Q ss_pred             EEccCCccccCccccccCCCCCCEEeCcCCcCcc-cCCccccCCCCCCEEECcCCcccccc
Q 037558          447 LNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQRAVTL  506 (518)
Q Consensus       447 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~i  506 (518)
                      |.+++|.+..  -..++.+-+|..||+++|++.. .-...++++|.|+.+.+.+|++.+.+
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            8888887752  3346777788888999888764 22356788899999999999886543

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=6.8e-11  Score=124.45  Aligned_cols=113  Identities=26%  Similarity=0.431  Sum_probs=97.6

Q ss_pred             CCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCc
Q 037558          395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS  474 (518)
Q Consensus       395 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~  474 (518)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788999999998888889999999999999999988888888899999999999999998899889999999999999


Q ss_pred             CCcCcccCCccccCC-CCCCEEECcCCccccccC
Q 037558          475 LNHIVGEIPKELGKL-NSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       475 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~ip  507 (518)
                      +|++.|.+|..+... .++..+++.+|+..+.+|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999888763 467788888888766555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.3e-12  Score=127.02  Aligned_cols=196  Identities=26%  Similarity=0.453  Sum_probs=160.0

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      .+..-...|++.|++ .++|..++.+..|+.+.+..|.+. .+|..+.++..|.+|||+.|+++ .+|..+..+ -|+.|
T Consensus        73 ~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL  148 (722)
T ss_pred             cccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence            455566778888988 467888888999999999999998 79999999999999999999998 778888776 58999


Q ss_pred             EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      -+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+.. +|..+.. -.|..||++.|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee
Confidence            99999987 67888888899999999999987 678888999999999999998876 6666764 46889999999988


Q ss_pred             cCCcccccCCCCCcEEEccCCcCcccCccccCC---CCCccEEEccCCc
Q 037558          265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGK---MRSLSVLDLNENQ  310 (518)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~---l~~L~~L~l~~n~  310 (518)
                       .+|-.|.++..|++|-|.+|.+. .-|..+..   ..-.++|+..-++
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence             68888999999999999999887 44443332   2334566666653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.14  E-value=3.5e-11  Score=129.34  Aligned_cols=104  Identities=22%  Similarity=0.229  Sum_probs=48.9

Q ss_pred             CCcEEeCCCCC--CcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558          108 RLAYLDLTGSG--LFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF  185 (518)
Q Consensus       108 ~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  185 (518)
                      +|++|-+..|.  +.....+.|..++.|++||+++|.-.+.+|..++.+.+||+|+++.+.+. .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555444443  22222223444555555555554444455555555555555555555554 4455555555555555


Q ss_pred             ccCccccccCCccccCCCCCcEEEccc
Q 037558          186 IYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       186 l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      +.++.....+|.....+.+|++|.+..
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            554443333333333444555554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=3.3e-12  Score=117.40  Aligned_cols=136  Identities=20%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             cCCCCCcEEEcccCcCCCC----cchhccCCCCCcEEEcccCcCCcc----ccccccCCCCCCEeeCcCCCCccC----C
Q 037558          200 GNSKSIFNLDLSSNQFSGP----IPLFFGNLSNLKSLYLYGNSLSSP----ILSSLGKFKSLIDLQLNENQFTGY----I  267 (518)
Q Consensus       200 ~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~  267 (518)
                      ..-++|+.+...+|.+...    +...|...+.|+.+.++.|.|...    ....+..+++|+.|++.+|.++..    +
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3446677777777776532    223455667777777777776532    224556677788888887777642    3


Q ss_pred             cccccCCCCCcEEEccCCcCcccCcccc----C-CCCCccEEEccCCcccccC----CccCcCCCCCCeeecccccc
Q 037558          268 PRSFGNLTSLSTLRLSKNELFGSIPDEI----G-KMRSLSVLDLNENQFKGVL----PPSISNLTNLKELALLYNHL  335 (518)
Q Consensus       268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~----~-~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l  335 (518)
                      ...+..+++|+.|+++.|.+.......+    . ..|.|+.+.+.+|.++..-    .......+.|..|++++|.+
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3445667778888888877654322222    1 2577888888888776321    11233456777777777766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=7.6e-11  Score=118.49  Aligned_cols=200  Identities=36%  Similarity=0.496  Sum_probs=157.2

Q ss_pred             EEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          111 YLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      .+++..+.+... ...+..++.++.|++.+|.++ .+|....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            467777665332 223555688999999999998 7888888885 9999999999987 66667888999999999999


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcc
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR  269 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  269 (518)
                      ++... |......+.|+.|++++|++. .+|........|+++.+++|.+.. .+..+.++.++..+.+.+|++.. .+.
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccc
Confidence            98843 444558889999999999998 566666666779999999995333 56677888888888888888773 366


Q ss_pred             cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccC
Q 037558          270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI  319 (518)
Q Consensus       270 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l  319 (518)
                      .+..++++++|++++|.++. ++. ++.+.+++.+++++|.+....+...
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence            78888999999999999884 444 7888999999999999886655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=3.2e-12  Score=124.38  Aligned_cols=189  Identities=31%  Similarity=0.489  Sum_probs=119.1

Q ss_pred             EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558          207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE  286 (518)
Q Consensus       207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  286 (518)
                      ..|++.|++. .+|..+..+..|+.+.++.|.+.. +|..++++..|.+++++.|+++ ..|..+..++ |+.|.+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            3455555555 455555555555556666655543 5556666666666667666666 4566565555 7777777777


Q ss_pred             CcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhh
Q 037558          287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNI  366 (518)
Q Consensus       287 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~  366 (518)
                      ++ .+|+.++....|.+||.+.|.+. .+|..++++.+|+.|.++.|++. .+|.......|..||++.|++. .+|-.|
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhh
Confidence            66 66666776677777777777776 56666777777777777777766 5555555666777777777765 456667


Q ss_pred             cCCCCccEEecCCCcCccccChhhhc---CCCCcEEEcccC
Q 037558          367 CQGGALEIFTVSENHFQGTIPTSVRN---CTSLIRVHLNGN  404 (518)
Q Consensus       367 ~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n  404 (518)
                      ..++.|++|.|.+|.++ ..|..++.   ..-.++|+...|
T Consensus       231 r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            77777777777777776 34443321   222344555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=7.9e-12  Score=118.10  Aligned_cols=208  Identities=23%  Similarity=0.251  Sum_probs=114.4

Q ss_pred             cCCCCCCEEECCCCCCCcCCC--ccCCCCCCCcEEEccCCCCCcc--CCcCCcCCCCCCEEEccCccccccCCcc-ccCC
Q 037558          128 GLLSHLKFLFIDTNKLDGSIP--PEVGQLSSMEVFFLCSNYLNGS--VPPSLGNLSHISLLFIYDNLFSGFIPSD-IGNS  202 (518)
Q Consensus       128 ~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~  202 (518)
                      +++++|+.+.|.++.+. ..+  .....|++++.|||++|-+..-  +-.....+++|+.|+++.|.+....... -..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45666666666666654 222  2345566666666666654421  1123445666666666666654321111 1245


Q ss_pred             CCCcEEEcccCcCCCCc-chhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC-cccccCCCCCcEE
Q 037558          203 KSIFNLDLSSNQFSGPI-PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI-PRSFGNLTSLSTL  280 (518)
Q Consensus       203 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L  280 (518)
                      +.|+.|.++.|.++... ...+..+|+|+.|++.+|...........-+..|+.|+|++|++.... -...+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            56667777777666322 223345677777777777422222223334456777777777665321 1234566777777


Q ss_pred             EccCCcCccc-Cccc-----cCCCCCccEEEccCCccccc-CCccCcCCCCCCeeeccccccc
Q 037558          281 RLSKNELFGS-IPDE-----IGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       281 ~l~~n~l~~~-~p~~-----~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      +++.+.+... .|+.     ...+++|++|++..|++... ....+..+++|++|.+..|.++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777766532 2222     23467778888887777421 1123445567777777666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.5e-11  Score=113.76  Aligned_cols=159  Identities=19%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             cCCCCCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCcCcccCc--cccCCCCCccEEEccCCcccccCCc-cCcCCC
Q 037558          248 GKFKSLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIP--DEIGKMRSLSVLDLNENQFKGVLPP-SISNLT  323 (518)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~  323 (518)
                      +++.+|+.+.+.++.+..... .....+++++.|++++|-+....|  .....+|+|+.|+++.|.+...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            455677777887776552111 245567788888888776553211  2234577777778877776522211 112456


Q ss_pred             CCCeeecccccccccCCccc--ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC--hhhhcCCCCcEE
Q 037558          324 NLKELALLYNHLSGSIPPSL--GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP--TSVRNCTSLIRV  399 (518)
Q Consensus       324 ~L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L  399 (518)
                      .|+.|.++.|.++..-....  ..++++.|+++.|............+..|+.|+|++|.+-. .+  .....++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence            66777777776652211111  12556666666654222222222223345555555554431 11  122344555555


Q ss_pred             EcccCccc
Q 037558          400 HLNGNNLT  407 (518)
Q Consensus       400 ~L~~n~l~  407 (518)
                      +++.|.+.
T Consensus       277 nls~tgi~  284 (505)
T KOG3207|consen  277 NLSSTGIA  284 (505)
T ss_pred             hccccCcc
Confidence            55555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.3e-10  Score=100.36  Aligned_cols=100  Identities=28%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             CCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccc-cCCCCCCEEEccCCccccC-ccccccCCCCCCE
Q 037558          393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-GKCPKLDTLNVSMNNITGG-IPREIGNSSQLQA  470 (518)
Q Consensus       393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~  470 (518)
                      +.+|+.|++++|+|+..  +.+..+++|++|++++|+++.. ...+ ..+++|++|++++|+|... .-..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            44555555555555532  2344455555555555555522 2222 2355555555555555431 1123445556666


Q ss_pred             EeCcCCcCcccCCc----cccCCCCCCEEE
Q 037558          471 LDLSLNHIVGEIPK----ELGKLNSLTKLI  496 (518)
Q Consensus       471 L~L~~n~l~~~~~~----~l~~l~~L~~L~  496 (518)
                      |++.+|++... +.    .+..+|+|+.||
T Consensus       118 L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  118 LSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             eeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            66666655532 21    234456666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=6.4e-11  Score=106.68  Aligned_cols=132  Identities=21%  Similarity=0.259  Sum_probs=67.9

Q ss_pred             ccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcE
Q 037558          271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRE  350 (518)
Q Consensus       271 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~  350 (518)
                      +..++.|+++++++|.++ .+.++..-.|.++.|++++|.+...  +.+..+++|.+|++++|.++. +.          
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~----------  345 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CV----------  345 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hh----------
Confidence            344556666666666665 4445555566666666666666522  235556666666666665542 11          


Q ss_pred             EEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcccccc-ChhhhCCCCCCEEecccCc
Q 037558          351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRNN  429 (518)
Q Consensus       351 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~  429 (518)
                                   .+--.+.+.+.|.+++|.+.  ....+.++.+|..|++++|+|.... ...++++|.|+.+.|.+|.
T Consensus       346 -------------Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  346 -------------GWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -------------hhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence                         11222334444444444442  1133445555556666666554221 1234555555555555555


Q ss_pred             cc
Q 037558          430 FY  431 (518)
Q Consensus       430 l~  431 (518)
                      +.
T Consensus       411 l~  412 (490)
T KOG1259|consen  411 LA  412 (490)
T ss_pred             cc
Confidence            54

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.98  E-value=4.5e-10  Score=120.85  Aligned_cols=83  Identities=30%  Similarity=0.291  Sum_probs=35.7

Q ss_pred             CcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCC
Q 037558          175 LGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI  254 (518)
Q Consensus       175 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  254 (518)
                      |..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|++..+.....++.....+.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            334444444444444433444444444444444444444444 3444444444444444444333222233333344444


Q ss_pred             EeeC
Q 037558          255 DLQL  258 (518)
Q Consensus       255 ~L~l  258 (518)
                      +|.+
T Consensus       646 ~L~l  649 (889)
T KOG4658|consen  646 VLRL  649 (889)
T ss_pred             EEEe
Confidence            4444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=3.6e-10  Score=97.58  Aligned_cols=124  Identities=27%  Similarity=0.272  Sum_probs=45.5

Q ss_pred             cCcEEEccCccCcccCchhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhh-hCCCCCCEEe
Q 037558          347 ILRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL-AIYPNLTFID  424 (518)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~  424 (518)
                      .+++|++++|.+...-  .+. .+.+|+.|++++|.+.. + +.+..++.|++|++++|+|+.. .+.+ ..+|+|++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            3455555555544321  222 34567777777777763 2 3466778888888888888743 3333 4578888888


Q ss_pred             cccCcccccc-CccccCCCCCCEEEccCCccccCc---cccccCCCCCCEEeCcC
Q 037558          425 LSRNNFYGEI-SSNWGKCPKLDTLNVSMNNITGGI---PREIGNSSQLQALDLSL  475 (518)
Q Consensus       425 L~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~---~~~~~~l~~L~~L~L~~  475 (518)
                      +++|++.... -..+..+++|+.|++.+|++...-   ...+..+|+|+.||-..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            8888876432 245667888888888888887421   12345778888887643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=4.4e-10  Score=113.22  Aligned_cols=196  Identities=28%  Similarity=0.341  Sum_probs=114.9

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      .+..++.+++..|.+.. +...+..+.+|++|++.+|.+. .+...+..+++|++|++++|.|...  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            45556666666666543 3334667777888888888776 3444466777778888887777643  345566667777


Q ss_pred             EccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP-LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      ++.+|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence            7777777643  335556777777777777764333 1 3556667777777776553  22233333444445555555


Q ss_pred             ccCCcccccCCCC--CcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          264 TGYIPRSFGNLTS--LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       264 ~~~~~~~l~~l~~--L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      +..-+  +..+..  |+.+++++|++. ..+..+..+.++..+++.+|.+.
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            42211  112222  666666666655 23233445566666666666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=4.2e-09  Score=74.66  Aligned_cols=40  Identities=40%  Similarity=0.555  Sum_probs=14.7

Q ss_pred             cccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558          437 NWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN  476 (518)
Q Consensus       437 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  476 (518)
                      .|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus        20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3333333333333333333322333333333333333333

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=3.5e-09  Score=75.06  Aligned_cols=61  Identities=33%  Similarity=0.455  Sum_probs=56.1

Q ss_pred             CCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558          442 PKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       442 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      |+|++|++++|++....+..|..+++|++|++++|++....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999966667899999999999999999988888999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=8.1e-10  Score=111.26  Aligned_cols=265  Identities=26%  Similarity=0.282  Sum_probs=145.2

Q ss_pred             CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEcc
Q 037558          204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS  283 (518)
Q Consensus       204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  283 (518)
                      .++.++...+.....--. ...+..++.+.+..|.+.. +-..+..+.+++.|++.+|++.... ..+..+++|++|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecc
Confidence            444455544433321111 1345666777777777665 3344677788888888888887432 226677888888888


Q ss_pred             CCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc-ccccccCcEEEccCccCcccC
Q 037558          284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLILRELLLSGNHFAGYL  362 (518)
Q Consensus       284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~L~~L~l~~n~~~~~~  362 (518)
                      +|.++...  .+..++.|+.|++++|.+...  ..+..++.|+.+++++|.+...-+. .-....++.+++++|.+....
T Consensus       127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence            88887443  255667788888888888733  2445577888888888877643321 122256666667766654332


Q ss_pred             chhhcCCCCccEEecCCCcCccccChhhhcCCC--CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccC
Q 037558          363 PYNICQGGALEIFTVSENHFQGTIPTSVRNCTS--LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK  440 (518)
Q Consensus       363 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  440 (518)
                        .+.....+..+++..|.+...-+  +..+..  |+.+++++|++... +..+..+..+..|++.+|++...-  .+..
T Consensus       203 --~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~  275 (414)
T KOG0531|consen  203 --GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLER  275 (414)
T ss_pred             --chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccc
Confidence              12222333344555555542211  111222  56666666666522 234455556666666666654321  1233


Q ss_pred             CCCCCEEEccCCccccC---cccc-ccCCCCCCEEeCcCCcCcccC
Q 037558          441 CPKLDTLNVSMNNITGG---IPRE-IGNSSQLQALDLSLNHIVGEI  482 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~---~~~~-~~~l~~L~~L~L~~n~l~~~~  482 (518)
                      .+.+..+....|.+...   .... ....+.++.+.+..|+.....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            44455555555554421   1111 234455556666666554433

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.59  E-value=7.1e-08  Score=62.50  Aligned_cols=42  Identities=33%  Similarity=0.858  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeC
Q 037558           33 NEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCN   79 (518)
Q Consensus        33 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~   79 (518)
                      ++|++||++||+++..++...+.+|+...     ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-----~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-----DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT-------S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-----CCCCeeeccEEeC
Confidence            67999999999999876677899998741     2589999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=3.3e-08  Score=89.45  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             CCCCCEEecccCccccc-cCccccCCCCCCEEEccCCcccc-CccccccCCCCCCEEeCcCCcCcccCCc------cccC
Q 037558          417 YPNLTFIDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEIPK------ELGK  488 (518)
Q Consensus       417 l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~l~~  488 (518)
                      +|++..+.+..|.+... .......+|.+..|+++.|+|.. ...+++..+++|..|+++++++.+.+..      -++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            45666666666655432 23344556666677777776652 1224456677777777777776643332      2456


Q ss_pred             CCCCCEEECc
Q 037558          489 LNSLTKLILR  498 (518)
Q Consensus       489 l~~L~~L~l~  498 (518)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            7777776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.46  E-value=2.1e-08  Score=89.45  Aligned_cols=183  Identities=16%  Similarity=0.119  Sum_probs=108.4

Q ss_pred             CCCCCcEEEccCCCCCccCCcC----CcCCCCCCEEEccCccccccCC-------------ccccCCCCCcEEEcccCcC
Q 037558          153 QLSSMEVFFLCSNYLNGSVPPS----LGNLSHISLLFIYDNLFSGFIP-------------SDIGNSKSIFNLDLSSNQF  215 (518)
Q Consensus       153 ~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~n~~  215 (518)
                      +||+|+..+||.|.+....|+.    +++-+.|.+|.+++|++.-...             .-..+-|.|+......|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            4555555555555554333332    3445566666666665432111             1133567788888888877


Q ss_pred             CCCcc-----hhccCCCCCcEEEcccCcCCccc-----cccccCCCCCCEeeCcCCCCccCC----cccccCCCCCcEEE
Q 037558          216 SGPIP-----LFFGNLSNLKSLYLYGNSLSSPI-----LSSLGKFKSLIDLQLNENQFTGYI----PRSFGNLTSLSTLR  281 (518)
Q Consensus       216 ~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~  281 (518)
                      .. .+     ..+.+-.+|+++.+.+|.|....     ...+..+.+|+.|++..|.++...    ...+..++.|++|.
T Consensus       170 en-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         170 EN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             cc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            52 22     23344568888888888775321     123445678999999988877432    33455677789999


Q ss_pred             ccCCcCcccCccc----cC--CCCCccEEEccCCcccccCCcc-------CcCCCCCCeeeccccccc
Q 037558          282 LSKNELFGSIPDE----IG--KMRSLSVLDLNENQFKGVLPPS-------ISNLTNLKELALLYNHLS  336 (518)
Q Consensus       282 l~~n~l~~~~p~~----~~--~l~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~l~  336 (518)
                      +..|-++......    +.  ..|+|..|...+|...+.+...       -..+|-|..|.+.+|.+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            9888766432222    21  2577888888888776543221       134556666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=1.7e-08  Score=101.58  Aligned_cols=180  Identities=22%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             ccccCCCCCccEEEccCCcccccCCccCcCC-CCCCeeeccccc------c---cccCCcccccccCcEEEccCccCccc
Q 037558          292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNL-TNLKELALLYNH------L---SGSIPPSLGNLILRELLLSGNHFAGY  361 (518)
Q Consensus       292 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~------l---~~~~p~~~~~~~L~~L~l~~n~~~~~  361 (518)
                      |-.+..+.+|++|.+.++.+...  ..+..+ ..|++|.-.+.-      +   -|.+...+....|.+.+++.|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            55666778889998888887621  111111 123333221110      0   011222222234555555555544 2


Q ss_pred             CchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCC
Q 037558          362 LPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC  441 (518)
Q Consensus       362 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  441 (518)
                      +..++.-++.++.|+|++|+++..  +.+..+++|+.|||+.|.+....--...++. |..|.+++|.++..  ..+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence            233444445566666666665522  2455566666666666655533222223333 55666666655422  124455


Q ss_pred             CCCCEEEccCCccccCcc-ccccCCCCCCEEeCcCCcCc
Q 037558          442 PKLDTLNVSMNNITGGIP-REIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       442 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  479 (518)
                      .+|+.||+++|-+.+.-- ..+..+..|.+|.|.+|++.
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            555666666655543110 11233445555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.32  E-value=7.6e-08  Score=86.00  Aligned_cols=246  Identities=20%  Similarity=0.210  Sum_probs=126.7

Q ss_pred             cCCCCCCEeeCcCCCCccCCcc----cccCCCCCcEEEccCCcCc---ccCc-------cccCCCCCccEEEccCCcccc
Q 037558          248 GKFKSLIDLQLNENQFTGYIPR----SFGNLTSLSTLRLSKNELF---GSIP-------DEIGKMRSLSVLDLNENQFKG  313 (518)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~---~~~p-------~~~~~l~~L~~L~l~~n~l~~  313 (518)
                      ..+..+..+++++|.|......    .+.+-.+|+..+++.-...   ..++       ..+.+||.|+.+++|.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3456778888888887654333    3344566676666653111   1122       234566777777777777765


Q ss_pred             cCCcc----CcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh-
Q 037558          314 VLPPS----ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT-  388 (518)
Q Consensus       314 ~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-  388 (518)
                      ..|..    +++-..|++|.+++|.+...--.-++ ..|.+  +..|+       ....-+.|+.+....|++..-... 
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~--la~nK-------Kaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFH--LAYNK-------KAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHH--HHHHh-------hhccCCCceEEEeccchhccCcHHH
Confidence            55543    34455666777766654310000000 00000  00110       112235566666666665421111 


Q ss_pred             ---hhhcCCCCcEEEcccCccccc-----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCcccc
Q 037558          389 ---SVRNCTSLIRVHLNGNNLTGN-----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITG  456 (518)
Q Consensus       389 ---~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~  456 (518)
                         .+..-..|+.+.+..|.|.-.     +...+..+.+|+.|||++|.++-.    +...+..++.|+.|.+.+|-++.
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence               122225677777777766522     122334567777777777776532    12233445667777777776654


Q ss_pred             Cccc----ccc--CCCCCCEEeCcCCcCcccCCcc-----c--cCCCCCCEEECcCCccc
Q 037558          457 GIPR----EIG--NSSQLQALDLSLNHIVGEIPKE-----L--GKLNSLTKLILRGNQRA  503 (518)
Q Consensus       457 ~~~~----~~~--~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~  503 (518)
                      .-..    .|.  ..++|+.|...+|.+.+.+...     +  ..+|-|..|.+.||.+.
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            3222    221  3466777777777655432221     1  24566666666777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.7e-08  Score=91.27  Aligned_cols=176  Identities=23%  Similarity=0.181  Sum_probs=91.2

Q ss_pred             CCccEEEccCCccccc-CCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCccc--CchhhcCCCCccE
Q 037558          299 RSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGY--LPYNICQGGALEI  374 (518)
Q Consensus       299 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~  374 (518)
                      +.|+++|++...++.. .-..+..|.+|+.|.+.++.+...+...++. .+|+.++++.+.-...  ..-.+..++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888888777632 2234567788888888888877665555544 6777777777643221  1223445566666


Q ss_pred             EecCCCcCccccCh-hhh-cCCCCcEEEcccCccc--c-ccChhhhCCCCCCEEecccCc-cccccCccccCCCCCCEEE
Q 037558          375 FTVSENHFQGTIPT-SVR-NCTSLIRVHLNGNNLT--G-NISEALAIYPNLTFIDLSRNN-FYGEISSNWGKCPKLDTLN  448 (518)
Q Consensus       375 L~l~~n~l~~~~~~-~~~-~l~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~  448 (518)
                      |+++.|.+...... .+. --++|+.|+++++.-.  . .+.--...+|+|..|||++|. ++......+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            66666644322111 111 1245555566655211  1 111222345555555555543 2222222344455555555


Q ss_pred             ccCCccccCcccc---ccCCCCCCEEeCcCC
Q 037558          449 VSMNNITGGIPRE---IGNSSQLQALDLSLN  476 (518)
Q Consensus       449 ls~n~l~~~~~~~---~~~l~~L~~L~L~~n  476 (518)
                      ++.|..  .+|..   +...|+|.+||+-++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            555542  23332   234455555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=8.7e-09  Score=103.61  Aligned_cols=156  Identities=24%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             cCCCCCCCcEEeCCCCCCccc---C------Ccccc----------------------CCCCCCEEECCCCCCCcCCCcc
Q 037558          102 SFSSFPRLAYLDLTGSGLFGT---I------PPEVG----------------------LLSHLKFLFIDTNKLDGSIPPE  150 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~~~---~------~~~~~----------------------~l~~L~~L~l~~n~~~~~~p~~  150 (518)
                      .+..|..||+|.+.++.+...   .      ..-|+                      ....|...+.++|.+. .+-.+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S  182 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES  182 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence            678888899999988876421   0      00000                      0123444444555444 33334


Q ss_pred             CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc
Q 037558          151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK  230 (518)
Q Consensus       151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~  230 (518)
                      +.-++.|+.|||++|++...  ..+..+++|++|||++|.+....--....+. |+.|.+++|.++..  ..+.++.+|+
T Consensus       183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence            44455555555555555422  2455555555555555555432222222333 55555555555421  2244555555


Q ss_pred             EEEcccCcCCccc-cccccCCCCCCEeeCcCCCC
Q 037558          231 SLYLYGNSLSSPI-LSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       231 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~  263 (518)
                      .|++++|-+.+.- ...+..+..|+.|.|.+|.+
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5555555443311 11222334455555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.3e-08  Score=91.97  Aligned_cols=178  Identities=24%  Similarity=0.242  Sum_probs=96.4

Q ss_pred             CCCEeeCcCCCCccC-CcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCc-ccccCC-ccCcCCCCCCee
Q 037558          252 SLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ-FKGVLP-PSISNLTNLKEL  328 (518)
Q Consensus       252 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L  328 (518)
                      .++++|+++..++.. .-..+..+.+|+.|.+.++++.+.+...+++-.+|+.++++.+. ++.... -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466667766655421 11224456677777777777766666666667777777777653 321111 134566777777


Q ss_pred             ecccccccccCCcc-ccc--ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC-
Q 037558          329 ALLYNHLSGSIPPS-LGN--LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN-  404 (518)
Q Consensus       329 ~l~~n~l~~~~p~~-~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-  404 (518)
                      +++-|.+....... ...  .+++.|+++++.-.                     -....+..-..++++|..|||++| 
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence            77776554332111 111  44555555543210                     000011122345666666676665 


Q ss_pred             ccccccChhhhCCCCCCEEecccCccccccCc---cccCCCCCCEEEccCC
Q 037558          405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISS---NWGKCPKLDTLNVSMN  452 (518)
Q Consensus       405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~ls~n  452 (518)
                      .++......+.+++.|++|.++.|..  .+|.   .+...|+|.+|++-++
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            34444445566667777777777654  2232   2455677777777665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.8e-07  Score=84.69  Aligned_cols=86  Identities=28%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             CCCCCEeeCcCCCCcc--CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCC
Q 037558          250 FKSLIDLQLNENQFTG--YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLK  326 (518)
Q Consensus       250 l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~  326 (518)
                      ++.++.+++.+|.++.  .+...+.++|.|+.|+++.|++...+...-....+|++|-+.+..+.-... ..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3456666666666552  222334567777777777777654332211344567777777666542222 2345667777


Q ss_pred             eeecccccc
Q 037558          327 ELALLYNHL  335 (518)
Q Consensus       327 ~L~l~~n~l  335 (518)
                      .|+++.|++
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            777777744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=1.2e-07  Score=76.03  Aligned_cols=84  Identities=23%  Similarity=0.347  Sum_probs=40.4

Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL  473 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  473 (518)
                      ..|+..+|++|.+....+.....++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            34444455555554333333334445555555555554 33444555555555555555554 34444444555555555


Q ss_pred             cCCcCc
Q 037558          474 SLNHIV  479 (518)
Q Consensus       474 ~~n~l~  479 (518)
                      .+|...
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=2.3e-07  Score=74.41  Aligned_cols=135  Identities=24%  Similarity=0.270  Sum_probs=95.2

Q ss_pred             CcEEEccCccCcc--cCchhhcCCCCccEEecCCCcCccccChhhh-cCCCCcEEEcccCccccccChhhhCCCCCCEEe
Q 037558          348 LRELLLSGNHFAG--YLPYNICQGGALEIFTVSENHFQGTIPTSVR-NCTSLIRVHLNGNNLTGNISEALAIYPNLTFID  424 (518)
Q Consensus       348 L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  424 (518)
                      +-.+++++|++..  ..+..+.....|...++++|.+. .+|..|. .++.++.+++++|+|. .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            4556677776542  23445566677888899999998 5555554 5678999999999999 5566699999999999


Q ss_pred             cccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558          425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL  486 (518)
Q Consensus       425 L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  486 (518)
                      ++.|.+. ..|..+..+.++-.|+..+|.+. +++..+..-...-..++.++++.+.-+..+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            9999998 55666666888999999999887 555443322233344555566665555433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.9e-05  Score=51.15  Aligned_cols=36  Identities=42%  Similarity=0.621  Sum_probs=15.6

Q ss_pred             CCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          443 KLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       443 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33333444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.9e-05  Score=51.15  Aligned_cols=36  Identities=28%  Similarity=0.546  Sum_probs=16.8

Q ss_pred             CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCC
Q 037558          132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN  168 (518)
Q Consensus       132 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~  168 (518)
                      +|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 34444455555555555555443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.00011  Score=71.78  Aligned_cols=136  Identities=16%  Similarity=0.239  Sum_probs=72.6

Q ss_pred             cCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccE
Q 037558          295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEI  374 (518)
Q Consensus       295 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  374 (518)
                      +..+.+++.|++++|.++ .+|.   -.++|+.|.++++.-...+|..+ ..+|+.|++++|.....+|      ..|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP------~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP------ESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc------cccce
Confidence            445678889999988777 4552   23468888888754433555433 3567788887774333344      24566


Q ss_pred             EecCCCcCc--cccChhhhcCCCCcEEEcccCccc--cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEcc
Q 037558          375 FTVSENHFQ--GTIPTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVS  450 (518)
Q Consensus       375 L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls  450 (518)
                      |++..+...  +.+|      ++|+.|.+.+++-.  ..++..+  .++|++|++++|... ..|..+  ..+|+.|.++
T Consensus       117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence            666554332  1222      24555555432211  0011111  146777777666644 223222  2466666666


Q ss_pred             CC
Q 037558          451 MN  452 (518)
Q Consensus       451 ~n  452 (518)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            55

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.72  E-value=8e-05  Score=64.21  Aligned_cols=104  Identities=19%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCcccccc-CccccCCCCCCEEEc
Q 037558          371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLDTLNV  449 (518)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l  449 (518)
                      ....+++++|.+.  -...|..++.|..|.+.+|+|+..-|.--..+++|.+|.|.+|.+.... -..+..||+|++|.+
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4455666666554  1234566677777777777777665555555667777777777665331 223556777777777


Q ss_pred             cCCccccCcc---ccccCCCCCCEEeCcCC
Q 037558          450 SMNNITGGIP---REIGNSSQLQALDLSLN  476 (518)
Q Consensus       450 s~n~l~~~~~---~~~~~l~~L~~L~L~~n  476 (518)
                      -+|++...--   ..+..+++|++||.++=
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777653211   23456677777776654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.70  E-value=1e-06  Score=83.67  Aligned_cols=136  Identities=19%  Similarity=0.255  Sum_probs=72.4

Q ss_pred             CCCCccEEecCCCcCccc-cChhh-hcCCCCcEEEcccCc-cccccChhh-hCCCCCCEEecccCccc--cccCccccCC
Q 037558          368 QGGALEIFTVSENHFQGT-IPTSV-RNCTSLIRVHLNGNN-LTGNISEAL-AIYPNLTFIDLSRNNFY--GEISSNWGKC  441 (518)
Q Consensus       368 ~~~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~~~~~  441 (518)
                      ++..|+.++.+++...+. .-..+ .++.+|+.+.+.+|+ +++.-...+ .+++.|+.+++..+...  +.+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            345666776666543211 11111 346777777777764 222211122 34566777777666432  1122333457


Q ss_pred             CCCCEEEccCCccccCc-----cccccCCCCCCEEeCcCCcCc-ccCCccccCCCCCCEEECcCCccc
Q 037558          442 PKLDTLNVSMNNITGGI-----PREIGNSSQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQRA  503 (518)
Q Consensus       442 ~~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~  503 (518)
                      +.|+.|.+++|......     ...-..+..|+.+.+++++.. +..-..+..+++|+.+++-+++-.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            77777777777543211     112234566777777777543 233344556777777777776643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=0.00019  Score=70.19  Aligned_cols=130  Identities=15%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC-ccccccChhhhCCCCCCEEe
Q 037558          346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN-NLTGNISEALAIYPNLTFID  424 (518)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~  424 (518)
                      ..++.|++++|.+... | .  -..+|+.|.+++|.-...+|..+.  ++|++|++++| .+. .+|      ++|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccceEE
Confidence            5688999998866543 4 1  124689999988644345665543  68899999988 444 333      4577788


Q ss_pred             cccCcccc--ccCccccCCCCCCEEEccCCccc-c-CccccccCC-CCCCEEeCcCCcCcccCCccccCCCCCCEEECcC
Q 037558          425 LSRNNFYG--EISSNWGKCPKLDTLNVSMNNIT-G-GIPREIGNS-SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG  499 (518)
Q Consensus       425 L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~-~-~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  499 (518)
                      ++++....  .+|      ++|+.|.+.+++.. . .+|.   .+ ++|++|++++|... ..|..+.  .+|+.|+++.
T Consensus       119 L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        119 IKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             eCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            77665431  222      25566666433211 0 1111   12 46788888777755 3443333  4777777766


Q ss_pred             C
Q 037558          500 N  500 (518)
Q Consensus       500 n  500 (518)
                      |
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            5

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.63  E-value=2.8e-05  Score=82.18  Aligned_cols=136  Identities=18%  Similarity=0.158  Sum_probs=66.4

Q ss_pred             ccCcEEEccCccCcc-cCchh-hcCCCCccEEecCCCcCccc-cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCE
Q 037558          346 LILRELLLSGNHFAG-YLPYN-ICQGGALEIFTVSENHFQGT-IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTF  422 (518)
Q Consensus       346 ~~L~~L~l~~n~~~~-~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  422 (518)
                      .+|+.|++++..... ..+.. -..+|.|+.|.+.+-.+... +.....++++|..||+++++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            467777777654321 11111 22346666666666544321 222234556666666666666543  45556666666


Q ss_pred             EecccCccccc-cCccccCCCCCCEEEccCCccccCc--cc----cccCCCCCCEEeCcCCcCcccCC
Q 037558          423 IDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGGI--PR----EIGNSSQLQALDLSLNHIVGEIP  483 (518)
Q Consensus       423 L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~--~~----~~~~l~~L~~L~L~~n~l~~~~~  483 (518)
                      |.+.+-.+... .-..+.++++|+.||+|........  ..    .-..+|.|+.||.|+..+.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            66665555421 1122345566666666654433211  11    11234555555555555554333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=2.3e-05  Score=82.87  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=14.0

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       177 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      ++++|..||+++++++..  ..++++++|+.|.+.+
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence            344444444444444322  2334444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00022  Score=61.62  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccC-CccccCCCCCcEEEcc
Q 037558          133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFI-PSDIGNSKSIFNLDLS  211 (518)
Q Consensus       133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~  211 (518)
                      ...+||++|.+.  --..|.+++.|.+|.+.+|.|+..-|.--.-+++|+.|.+.+|.+.... -..+..+|+|++|.+-
T Consensus        44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            334444444443  1122334444444444444444222222222344444444444433210 1123444555555555


Q ss_pred             cCcCC
Q 037558          212 SNQFS  216 (518)
Q Consensus       212 ~n~~~  216 (518)
                      +|+++
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            55443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.46  E-value=0.00044  Score=57.21  Aligned_cols=105  Identities=21%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558          366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD  445 (518)
Q Consensus       366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  445 (518)
                      |.++.+|+.+.+.+ .+.......|..+++|+.+.+.++ +......++..+++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444455555443 222222333444445555555443 3333334444444455555543 22222233344445555


Q ss_pred             EEEccCCccccCccccccCCCCCCEEeCcC
Q 037558          446 TLNVSMNNITGGIPREIGNSSQLQALDLSL  475 (518)
Q Consensus       446 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  475 (518)
                      .+++..+ +.......|.++ .|+.+.+..
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5555433 222222333443 444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00062  Score=56.28  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558          102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI  181 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  181 (518)
                      .|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            556666666666653 343333445666666666666654 4322333455665666666644 2222223344455556


Q ss_pred             CEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      +.+.+..+ +.......+.++ +|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66555443 333333344444 555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=8.2e-05  Score=66.93  Aligned_cols=103  Identities=25%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC--ccccccCccccCCCCCCEEEccCCccccCcccc---ccCC
Q 037558          391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN--NFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE---IGNS  465 (518)
Q Consensus       391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~~l  465 (518)
                      ..+..|+.+++.+..++..  ..+..+++|+.|.++.|  .+.+.++.....+|+|++|++++|++..  +..   +..+
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l  115 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL  115 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence            3344555555555555422  23455666677777777  4444444445556777777777777652  222   3445


Q ss_pred             CCCCEEeCcCCcCcccCC---ccccCCCCCCEEEC
Q 037558          466 SQLQALDLSLNHIVGEIP---KELGKLNSLTKLIL  497 (518)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l  497 (518)
                      ++|..|++.+|..++.--   ..+.-+++|++||-
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            566677777776553110   12334566665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.00024  Score=63.97  Aligned_cols=61  Identities=23%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCC--CCCcCCCccCCCCCCCcEEEccCCCC
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN--KLDGSIPPEVGQLSSMEVFFLCSNYL  167 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~L~~n~~  167 (518)
                      .+..|+.+++.+..++..  ..+-.+++|++|.++.|  ++.+.++.....+++|++|+++.|++
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            344444444444433221  11233445555555555  33333333333444444444444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.06  E-value=2.5e-05  Score=74.49  Aligned_cols=297  Identities=16%  Similarity=0.092  Sum_probs=142.5

Q ss_pred             CCCEEEccCcccccc--CCccccCCCCCcEEEcccCcC-CCCcchh-ccCCCCCcEEEcccC-cCCccccc-cccCCCCC
Q 037558          180 HISLLFIYDNLFSGF--IPSDIGNSKSIFNLDLSSNQF-SGPIPLF-FGNLSNLKSLYLYGN-SLSSPILS-SLGKFKSL  253 (518)
Q Consensus       180 ~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~~~~-l~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~L  253 (518)
                      .|+.|.+.++.-.+.  .-....+++++++|.+.++.. +...-.. -..+++|++|++..| .++..... --..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            577777777754332  122235678888887777762 2111112 235677777777763 33332222 12345677


Q ss_pred             CEeeCcCCC-CccC-CcccccCCCCCcEEEccCCcCccc--CccccCCCCCccEEEccCCc-ccccCC-ccCcCCCCCCe
Q 037558          254 IDLQLNENQ-FTGY-IPRSFGNLTSLSTLRLSKNELFGS--IPDEIGKMRSLSVLDLNENQ-FKGVLP-PSISNLTNLKE  327 (518)
Q Consensus       254 ~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~  327 (518)
                      ++++++++. +++. +-....++..++.+...+|.-.+.  +...=+.+..+..+++.++. ++.... ..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            777777653 3221 111223344455554444421100  00001223334444443432 221110 01123344445


Q ss_pred             eecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCc-CccccChhh-hcCCCCcEEEcccCc
Q 037558          328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENH-FQGTIPTSV-RNCTSLIRVHLNGNN  405 (518)
Q Consensus       328 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~  405 (518)
                      ++.+++...+..+                     +..-..++.+|+.+.++.++ ++..--..+ .+++.|+.+++..+.
T Consensus       299 l~~s~~t~~~d~~---------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  299 LCYSSCTDITDEV---------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hcccCCCCCchHH---------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            5444443211110                     00112234566666666663 221111112 245677777777764


Q ss_pred             cc--cccChhhhCCCCCCEEecccCcccccc-----CccccCCCCCCEEEccCCcccc-CccccccCCCCCCEEeCcCCc
Q 037558          406 LT--GNISEALAIYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNH  477 (518)
Q Consensus       406 l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~  477 (518)
                      ..  +.+...-.+++.|+.+.+++|......     ...-.....|..+.+++++.+. ..-..+..++.|+.+++-+|+
T Consensus       358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            33  123333456777888888877543221     2222446678888888887653 233445677888888888875


Q ss_pred             Cccc--CCccccCCCCCCEEEC
Q 037558          478 IVGE--IPKELGKLNSLTKLIL  497 (518)
Q Consensus       478 l~~~--~~~~l~~l~~L~~L~l  497 (518)
                      -...  +...-.++|++++..+
T Consensus       438 ~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  438 DVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhHHHHhhCccceehhh
Confidence            3221  1122245677666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=3.5e-05  Score=69.62  Aligned_cols=100  Identities=24%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCc-cccccCCCCCCEE
Q 037558          393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI-PREIGNSSQLQAL  471 (518)
Q Consensus       393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L  471 (518)
                      +.+.+.|+.-+|.+++.  .....++.|+.|.|+=|+|+..-  .+..|++|++|.|..|.|.+.. ...+.++++|++|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556667777776644  23456677777777777776442  3567778888888888776321 1345677888888


Q ss_pred             eCcCCcCcccCCcc-----ccCCCCCCEEE
Q 037558          472 DLSLNHIVGEIPKE-----LGKLNSLTKLI  496 (518)
Q Consensus       472 ~L~~n~l~~~~~~~-----l~~l~~L~~L~  496 (518)
                      .|..|+..|..+..     +.-+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888877765532     34467777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.45  E-value=0.00027  Score=73.06  Aligned_cols=110  Identities=21%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCCCCcEEEcccCcCCcc--ccccccCCCCCCEeeCcCC-CCccCCc----ccccCCCCCcEEEccCCc-CcccCccccC
Q 037558          225 NLSNLKSLYLYGNSLSSP--ILSSLGKFKSLIDLQLNEN-QFTGYIP----RSFGNLTSLSTLRLSKNE-LFGSIPDEIG  296 (518)
Q Consensus       225 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~----~~l~~l~~L~~L~l~~n~-l~~~~p~~~~  296 (518)
                      .++.|+.+.+..+.-...  .......++.|+.|+++++ ......+    .....+++|+.++++.+. ++...-..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665532221  2233445566777777652 1111111    122334566666666665 3333222232


Q ss_pred             C-CCCccEEEccCCc-ccccCCc-cCcCCCCCCeeeccccc
Q 037558          297 K-MRSLSVLDLNENQ-FKGVLPP-SISNLTNLKELALLYNH  334 (518)
Q Consensus       297 ~-l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~  334 (518)
                      . +++|++|.+.++. ++...-. ....+++|++|+++.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            2 5666666655555 3322111 22345556666666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.16  E-value=0.00045  Score=71.40  Aligned_cols=110  Identities=15%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             CCCCcEEeCCCCCCccc--CCccccCCCCCCEEECCCC-CCCcCCC----ccCCCCCCCcEEEccCCC-CCccCCcCCcC
Q 037558          106 FPRLAYLDLTGSGLFGT--IPPEVGLLSHLKFLFIDTN-KLDGSIP----PEVGQLSSMEVFFLCSNY-LNGSVPPSLGN  177 (518)
Q Consensus       106 l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~  177 (518)
                      ++.|+.+.+.++.-...  +-.....+++|+.|+++++ ......+    .....+.+|+.|+++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            55666666655532222  2233455666666666552 1111111    122344555666665555 33222122221


Q ss_pred             -CCCCCEEEccCcc-ccccCCcc-ccCCCCCcEEEcccCcC
Q 037558          178 -LSHISLLFIYDNL-FSGFIPSD-IGNSKSIFNLDLSSNQF  215 (518)
Q Consensus       178 -l~~L~~L~l~~n~-~~~~~~~~-~~~~~~L~~L~l~~n~~  215 (518)
                       +++|++|.+.+|. +++..-.. ...++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             4555555555444 33211111 22345555555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.00023  Score=64.42  Aligned_cols=63  Identities=29%  Similarity=0.258  Sum_probs=27.7

Q ss_pred             CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC-ccccCCCCCccEEEccCCcccc
Q 037558          249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI-PDEIGKMRSLSVLDLNENQFKG  313 (518)
Q Consensus       249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~  313 (518)
                      +++.|+.|.|+-|+|+..  ..+..+++|++|+|..|.+.... -..+.++++|+.|.|..|.-.|
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            344445555555544432  12344455555555555443210 0123344555555555554443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.0024  Score=34.34  Aligned_cols=21  Identities=24%  Similarity=0.178  Sum_probs=13.5

Q ss_pred             CCCEEECcCCccccccCccCcc
Q 037558          491 SLTKLILRGNQRAVTLSFINKV  512 (518)
Q Consensus       491 ~L~~L~l~~n~~~~~ip~~l~~  512 (518)
                      +|++||+++|++. .||.++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777665 66666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.96  E-value=0.0098  Score=31.91  Aligned_cols=12  Identities=33%  Similarity=0.395  Sum_probs=5.2

Q ss_pred             CcEEEccCCCCC
Q 037558          157 MEVFFLCSNYLN  168 (518)
Q Consensus       157 L~~L~L~~n~~~  168 (518)
                      |++||+++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.94  E-value=0.00029  Score=71.45  Aligned_cols=181  Identities=23%  Similarity=0.228  Sum_probs=105.4

Q ss_pred             CccEEEccCCcccccCC----ccCcCCCCCCeeecccccccccCCccc-----cc-ccCcEEEccCccCccc----Cchh
Q 037558          300 SLSVLDLNENQFKGVLP----PSISNLTNLKELALLYNHLSGSIPPSL-----GN-LILRELLLSGNHFAGY----LPYN  365 (518)
Q Consensus       300 ~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~-~~L~~L~l~~n~~~~~----~~~~  365 (518)
                      .+..+.+.+|.+.....    ..+...+.|..|++++|.+.+.--..+     .+ ..+++|++..|.++..    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            47888888888874432    345677889999999998863221111     11 3456677777766543    3334


Q ss_pred             hcCCCCccEEecCCCcCccc----cChhhh----cCCCCcEEEcccCccccc----cChhhhCCCC-CCEEecccCcccc
Q 037558          366 ICQGGALEIFTVSENHFQGT----IPTSVR----NCTSLIRVHLNGNNLTGN----ISEALAIYPN-LTFIDLSRNNFYG  432 (518)
Q Consensus       366 ~~~~~~L~~L~l~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~  432 (518)
                      +.....++.++++.|.+...    ++..+.    ...++++|++..|.++..    +...+...+. +..+++.+|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            44456677777777765311    122222    356677777777766622    1233444444 5567777777653


Q ss_pred             c----cCccccCC-CCCCEEEccCCccccC----ccccccCCCCCCEEeCcCCcCcc
Q 037558          433 E----ISSNWGKC-PKLDTLNVSMNNITGG----IPREIGNSSQLQALDLSLNHIVG  480 (518)
Q Consensus       433 ~----~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  480 (518)
                      .    ....+..+ ..+++++++.|.+...    ....+..++.++.+.++.|++..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3    12233334 5667777777777643    22334456677777777776654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.19  E-value=0.00067  Score=68.82  Aligned_cols=203  Identities=24%  Similarity=0.218  Sum_probs=129.8

Q ss_pred             CCcEEEccCCcCcccCc----cccCCCCCccEEEccCCcccccCCc----cCcCC-CCCCeeecccccccccCCcc----
Q 037558          276 SLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQFKGVLPP----SISNL-TNLKELALLYNHLSGSIPPS----  342 (518)
Q Consensus       276 ~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~p~~----  342 (518)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+.+....    .+... ..++.|.+..|.+++..-..    
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            47888899988765433    3445678899999999998743221    22333 56777888888776543221    


Q ss_pred             cc-cccCcEEEccCccCccc----Cchhhc----CCCCccEEecCCCcCcccc----ChhhhcCCC-CcEEEcccCcccc
Q 037558          343 LG-NLILRELLLSGNHFAGY----LPYNIC----QGGALEIFTVSENHFQGTI----PTSVRNCTS-LIRVHLNGNNLTG  408 (518)
Q Consensus       343 ~~-~~~L~~L~l~~n~~~~~----~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~  408 (518)
                      +. ...++.++++.|.+...    ++..+.    ...+++.|.+++|.++...    ...+...+. +..+++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            11 25688888888876411    222222    4567889999998776221    122334455 7779999998885


Q ss_pred             c----cChhhhCC-CCCCEEecccCcccccc----CccccCCCCCCEEEccCCccccCccc----cccCCCCCCEEeCcC
Q 037558          409 N----ISEALAIY-PNLTFIDLSRNNFYGEI----SSNWGKCPKLDTLNVSMNNITGGIPR----EIGNSSQLQALDLSL  475 (518)
Q Consensus       409 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~L~~  475 (518)
                      .    ....+..+ +.++.++++.|.+....    ...+..++.++++.+++|.+.+.-..    .......+..+.+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence            5    22344555 67899999999997653    44556678999999999998753222    223334455555655


Q ss_pred             CcC
Q 037558          476 NHI  478 (518)
Q Consensus       476 n~l  478 (518)
                      +..
T Consensus       328 ~~~  330 (478)
T KOG4308|consen  328 TGK  330 (478)
T ss_pred             cCc
Confidence            443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.59  E-value=0.14  Score=25.36  Aligned_cols=10  Identities=50%  Similarity=0.611  Sum_probs=3.2

Q ss_pred             CCEEEccCCc
Q 037558          444 LDTLNVSMNN  453 (518)
Q Consensus       444 L~~L~ls~n~  453 (518)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333444333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.08  E-value=0.023  Score=49.42  Aligned_cols=83  Identities=18%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccc-cCccc-cCCCCCCEEEccCCc-cccCccccccCCCCCCE
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE-ISSNW-GKCPKLDTLNVSMNN-ITGGIPREIGNSSQLQA  470 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~  470 (518)
                      ..++.++-+++.|...--+.+..++.++.|.+.+|.-.+. --..+ .-.++|+.|++++|. |++.-...+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3456677777777666556666677777777776643211 00001 124566666666663 44333344555666666


Q ss_pred             EeCcCC
Q 037558          471 LDLSLN  476 (518)
Q Consensus       471 L~L~~n  476 (518)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            655544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.01  E-value=0.0047  Score=54.71  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEE
Q 037558          392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQAL  471 (518)
Q Consensus       392 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  471 (518)
                      .....+.||++.|++.. .-.-++.++.+..|+++.|++. ..|..+.....++.+++-+|..+ ..|.++...+.++.+
T Consensus        40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            34455555555554431 1222333344444555555444 33444444444444444444444 344445555555555


Q ss_pred             eCcCCcCc
Q 037558          472 DLSLNHIV  479 (518)
Q Consensus       472 ~L~~n~l~  479 (518)
                      ++.++++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            55555433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.65  E-value=0.089  Score=45.92  Aligned_cols=82  Identities=18%  Similarity=0.120  Sum_probs=47.8

Q ss_pred             CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccc-cChhh-hCCCCCCEEecccC-ccccccCccccCCCCCCEE
Q 037558          371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEAL-AIYPNLTFIDLSRN-NFYGEISSNWGKCPKLDTL  447 (518)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L  447 (518)
                      .++.++-++..+...--+.+..++.++.|.+.+|.=-+. --+.+ ...++|+.|++++| +|++..-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777766655556666677777777776632211 00111 13467777777766 4555445556666777777


Q ss_pred             EccCC
Q 037558          448 NVSMN  452 (518)
Q Consensus       448 ~ls~n  452 (518)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.60  E-value=0.16  Score=27.77  Aligned_cols=15  Identities=47%  Similarity=0.632  Sum_probs=6.1

Q ss_pred             CCCCEEeCcCCcCcc
Q 037558          466 SQLQALDLSLNHIVG  480 (518)
Q Consensus       466 ~~L~~L~L~~n~l~~  480 (518)
                      ++|++|+|++|++.+
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344455555554443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.16  E-value=0.015  Score=51.74  Aligned_cols=87  Identities=14%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558          366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD  445 (518)
Q Consensus       366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  445 (518)
                      +..+.....||++.|++. ..-..|..++.+..|+++.|++. ..|..+.....+..+++.+|+.+ ..|.++...+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            333445555566555543 23333444555555566655554 33444444555555555555554 4455555566666


Q ss_pred             EEEccCCccc
Q 037558          446 TLNVSMNNIT  455 (518)
Q Consensus       446 ~L~ls~n~l~  455 (518)
                      ++++.++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            6666555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.49  E-value=1.5  Score=24.30  Aligned_cols=13  Identities=46%  Similarity=0.572  Sum_probs=5.3

Q ss_pred             CCCEEecccCccc
Q 037558          419 NLTFIDLSRNNFY  431 (518)
Q Consensus       419 ~L~~L~L~~n~l~  431 (518)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3344444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.49  E-value=1.5  Score=24.30  Aligned_cols=13  Identities=46%  Similarity=0.572  Sum_probs=5.3

Q ss_pred             CCCEEecccCccc
Q 037558          419 NLTFIDLSRNNFY  431 (518)
Q Consensus       419 ~L~~L~L~~n~l~  431 (518)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3344444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-40
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-40
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-19
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-07
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-07
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		6e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		7e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-06
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		1e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-04
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		5e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		7e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 175/556 (31%), Positives = 252/556 (45%), Gaps = 108/556 (19%)
Query: 34  EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND--------AGRVI 85
            E   L+ +K  L  +N   LP W       SS  +PC + G++C D        + + +
Sbjct: 12  REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPL 62
Query: 86  NIS------------------LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFG--TIPP 125
           N+                   L N+ ++G++ GF  S+   L  LDL+ + L G  T   
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLT 120
Query: 126 EVGLLSHLKFLFIDTNKLDGSIPPEVG---QLSSMEVFFLCSNYLNGS------VPPSLG 176
            +G  S LKFL + +N LD   P +V    +L+S+EV  L +N ++G+      +    G
Sbjct: 121 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
            L H++   I  N  SG +  D+    ++  LD+SSN FS  IP F G+ S L+ L + G
Sbjct: 179 ELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 232
Query: 237 NSLSSPILSSLGK----------------------FKSLIDLQLNENQFTGYIPRSF-GN 273
           N LS     ++                         KSL  L L EN+FTG IP    G 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 274 LTSLSTLRLSKNELFGSIP-------------------------DEIGKMRSLSVLDLNE 308
             +L+ L LS N  +G++P                         D + KMR L VLDL+ 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 309 NQFKGVLPPSISNLT-NLKELALLYNHLSGSIPPSLGNL---ILRELLLSGNHFAGYLPY 364
           N+F G LP S++NL+ +L  L L  N+ SG I P+L       L+EL L  N F G +P 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
            +     L    +S N+  GTIP+S+ + + L  + L  N L G I + L     L  + 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK 484
           L  N+  GEI S    C  L+ +++S N +TG IP+ IG    L  L LS N   G IP 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 485 ELGKLNSLTKLILRGN 500
           ELG   SL  L L  N
Sbjct: 533 ELGDCRSLIWLDLNTN 548

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 11/390 (2%)
Query: 109 LAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQ--LSSMEVFFLCSN 165
           L  LDL+ +   G +P  +  LS  L  L + +N   G I P + Q   ++++  +L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225
              G +PP+L N S +  L +  N  SG IPS +G+   + +L L  N   G IP     
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
           +  L++L L  N L+  I S L    +L  + L+ N+ TG IP+  G L +L+ L+LS N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 286 ELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN 345
              G+IP E+G  RSL  LDLN N F G +P ++   +      +  N ++G     + N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKN 580
Query: 346 L-ILRELLLSGN--HFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
             + +E   +GN   F G     + +        ++   + G    +  N  S++ + ++
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
            N L+G I + +   P L  ++L  N+  G I    G    L+ L++S N + G IP+ +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
              + L  +DLS N++ G IP E+G+  + 
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP-EMGQFETF 729

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 175/556 (31%), Positives = 252/556 (45%), Gaps = 108/556 (19%)
Query: 34  EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND--------AGRVI 85
            E   L+ +K  L  +N   LP W       SS  +PC + G++C D        + + +
Sbjct: 9   REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPL 59
Query: 86  NIS------------------LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFG--TIPP 125
           N+                   L N+ ++G++ GF  S+   L  LDL+ + L G  T   
Sbjct: 60  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLT 117
Query: 126 EVGLLSHLKFLFIDTNKLDGSIPPEVG---QLSSMEVFFLCSNYLNGS------VPPSLG 176
            +G  S LKFL + +N LD   P +V    +L+S+EV  L +N ++G+      +    G
Sbjct: 118 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
            L H++   I  N  SG +  D+    ++  LD+SSN FS  IP F G+ S L+ L + G
Sbjct: 176 ELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 229
Query: 237 NSLSSPILSSLGK----------------------FKSLIDLQLNENQFTGYIPRSF-GN 273
           N LS     ++                         KSL  L L EN+FTG IP    G 
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 274 LTSLSTLRLSKNELFGSIP-------------------------DEIGKMRSLSVLDLNE 308
             +L+ L LS N  +G++P                         D + KMR L VLDL+ 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 309 NQFKGVLPPSISNLT-NLKELALLYNHLSGSIPPSLGNL---ILRELLLSGNHFAGYLPY 364
           N+F G LP S++NL+ +L  L L  N+ SG I P+L       L+EL L  N F G +P 
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
            +     L    +S N+  GTIP+S+ + + L  + L  N L G I + L     L  + 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK 484
           L  N+  GEI S    C  L+ +++S N +TG IP+ IG    L  L LS N   G IP 
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 485 ELGKLNSLTKLILRGN 500
           ELG   SL  L L  N
Sbjct: 530 ELGDCRSLIWLDLNTN 545

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 11/390 (2%)
Query: 109 LAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQ--LSSMEVFFLCSN 165
           L  LDL+ +   G +P  +  LS  L  L + +N   G I P + Q   ++++  +L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225
              G +PP+L N S +  L +  N  SG IPS +G+   + +L L  N   G IP     
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
           +  L++L L  N L+  I S L    +L  + L+ N+ TG IP+  G L +L+ L+LS N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 286 ELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN 345
              G+IP E+G  RSL  LDLN N F G +P ++   +      +  N ++G     + N
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKN 577
Query: 346 L-ILRELLLSGN--HFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
             + +E   +GN   F G     + +        ++   + G    +  N  S++ + ++
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
            N L+G I + +   P L  ++L  N+  G I    G    L+ L++S N + G IP+ +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
              + L  +DLS N++ G IP E+G+  + 
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP-EMGQFETF 726

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 242 PILSSLGKFKSLIDLQLNE-NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS 300
           PI SSL     L  L +   N   G IP +   LT L  L ++   + G+IPD + ++++
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 301 LSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL--ILRELLLSGNHF 358
           L  LD + N   G LPPSIS+L NL  +    N +SG+IP S G+   +   + +S N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 359 AGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYP 418
            G +P        L    +S N  +G       +  +  ++HL  N+L  ++ + + +  
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 419 NLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS 474
           NL  +DL  N  YG +     +   L +LNVS NN+ G IP+       LQ  D+S
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVS 296

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
            F  L NL++L++  N L +  +    +  +L +L+L+ NQ     PR F +LT L+ L 
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 282 LSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
           L  NEL  S+P  +  K+ SL  L L  NQ K V   +   LT LK L L  N L 
Sbjct: 140 LGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 3/231 (1%)
Query: 81  AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFID 139
           A R + I   ++ +   +   +F+    L  LDL+ +    ++ P     L  L  L +D
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 140 TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI 199
              L    P     L++++  +L  N L      +  +L +++ LF++ N  S       
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Query: 200 GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
               S+  L L  N+ +   P  F +L  L +LYL+ N+LS+    +L   ++L  L+LN
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
           +N +     R+      L   R S +E+  S+P  +   R L  L  N+ Q
Sbjct: 234 DNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAANDLQ 282

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + ++L+GN +S    +S    ++L  L L+ N        +F  L  L  L LS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS----LG 344
           S+ P     +  L  L L+    + + P     L  L+ L L  N L  ++P      LG
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
           NL    L L GN  +  +P    +G  +L+   + +N      P + R+   L+ ++L  
Sbjct: 154 NLT--HLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
           NNL+   +EALA    L ++ L+ N +  +  + 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 3/231 (1%)
Query: 81  AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFID 139
           A R + I   ++ +   +   +F+    L  LDL+ +    ++ P     L  L  L +D
Sbjct: 53  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 112
Query: 140 TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI 199
              L    P     L++++  +L  N L      +  +L +++ LF++ N  S       
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Query: 200 GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
               S+  L L  N+ +   P  F +L  L +LYL+ N+LS+    +L   ++L  L+LN
Sbjct: 173 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 232
Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
           +N +     R+      L   R S +E+  S+P  +   R L  L  N+ Q
Sbjct: 233 DNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAANDLQ 281

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + ++L+GN +S    +S    ++L  L L+ N        +F  L  L  L LS N    
Sbjct: 34  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS----LG 344
           S+ P     +  L  L L+    + + P     L  L+ L L  N L  ++P      LG
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 152
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
           NL    L L GN  +  +P    +G  +L+   + +N      P + R+   L+ ++L  
Sbjct: 153 NLT--HLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
           NNL+   +EALA    L ++ L+ N +  +  + 
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 243

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 185/447 (41%), Gaps = 75/447 (16%)
Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
           T+H  +FS    L +LDLT                 + ++  DT +    +   V  L+ 
Sbjct: 44  TIHNRTFSRLMNLTFLDLTRC--------------QINWIHEDTFQSHHQLSTLV--LTG 87
Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG--FIPSDIGNSKSIFNLDLSSNQ 214
             + F+    LNG  P SL +L      F+     S   FIP  + N +++ +L L SN 
Sbjct: 88  NPLIFMAETSLNG--PKSLKHL------FLIQTGISNLEFIP--VHNLENLESLYLGSNH 137
Query: 215 FSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN----------QF 263
            S    P  F    NLK L    N++       +   +  I+L LN N           F
Sbjct: 138 ISSIKFPKDFP-ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAF 196
Query: 264 TGYIPRS--FGNLTSLST----LRLSKNE-----LFGSIPDE------IGKMRSLSV--L 304
              I +S  FG   +LS     L+ S  +      F  I DE      +  +  +SV  L
Sbjct: 197 DSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESL 256
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAGYLP 363
           +L E++F  +   +    T L+EL L   HL G +P  +  L +L++L+LS NHF     
Sbjct: 257 NLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD---- 311
Query: 364 YNICQGGALEIFTVSENHFQGTIPT------SVRNCTSLIRVHLNGNNLTGNISEALAI- 416
             +CQ  A    +++  + +G +         +    +L  + L+ N++  +   +L + 
Sbjct: 312 -QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 417 -YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLS 474
              +L  ++LS N   G  S  + +CP+L+ L+++   +    P+    N   LQ L+L+
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 475 LNHIVGEIPKELGKLNSLTKLILRGNQ 501
              +       L  L  L  L L+GN 
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNH 457

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
           L L++NQ +  +PL  F +L+ L  LYL GN L S       +   L +L+LN NQ    
Sbjct: 88  LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQF 311
              +F  LT+L TL LS N+L  S+P    D +GK++++++     NQF
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFG---NQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
           L L++NQ +  +PL  F +L+ L  LYL GN L S       +   L +L+LN NQ    
Sbjct: 88  LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQF 311
              +F  LT+L TL LS N+L  S+P    D +GK++++++     NQF
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFG---NQF 191

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P  LG L+++  L +  
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
           N        DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +S
Sbjct: 227 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 277
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
            L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L 
Sbjct: 278 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 333
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
            + N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 334 FSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P  LG L+++  L +  
Sbjct: 171 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
           N        DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +S
Sbjct: 226 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 276
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
            L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L 
Sbjct: 277 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 332
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
            + N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 333 FSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
           L+NL  L L GN L S       K  +L +L L ENQ        F  LT+L+ L L+ N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
           +L  S+P  +  K+ +L+ LDL+ NQ + +       LT LK+L L  N L  S+P
Sbjct: 144 QL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
           L N++ L L GN L    +S+L +  +L  L L  NQ        F  LT+L  L L +N
Sbjct: 62  LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
           +L  S+PD +  K+ +L+ L+L  NQ + +       LTNL EL L YN L  S+P  + 
Sbjct: 120 QL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177
Query: 345 NLI--LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
           + +  L++L L  N           +  +L+   + +N +  T P  +R  +  I  H
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEWINKH 234

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 198 DIGNSKSIFNLD---LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           DI   K + NL    L+ NQ        F  L+NLK L L  N L S       K  +L 
Sbjct: 77  DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
            L L  NQ        F  LT+L+ L L  N+L  S+P+ +  K+  L  L LN+NQ K 
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 314 VLPPSISNLTNLKELALLYN 333
           V       LT+L  + LL N
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P  LG L+++  L +  
Sbjct: 175 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
           N        DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +S
Sbjct: 230 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 280
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
            L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L 
Sbjct: 281 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 336
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
              N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 337 FANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 373

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           LDL +N         F  L++L  LYL GN L S       K  SL  L L+ NQ     
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
              F  LT L  L L+ N+L  S+PD +  K+  L  L L +NQ K V       LT+L+
Sbjct: 93  NGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 327 ELALLYNHLSGSIP 340
            + L  N    + P
Sbjct: 152 YIWLHDNPWDCTCP 165

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + ++L+GN +S    +S    ++L  L L+ N   G    +F  LT L  L LS N    
Sbjct: 34  QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLG 344
            + P     +  L  L L+    + + P     L  L+ L L  N+L  ++P      LG
Sbjct: 94  VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLG 152
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
           NL    L L GN     +P +  +G  +L+   + +NH     P + R+   L+ ++L  
Sbjct: 153 NLT--HLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
           NNL+   +E L    +L ++ L+ N +  +  + 
Sbjct: 210 NNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRAR 243

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P  LG L+++  L +  
Sbjct: 176 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
           N        DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +S
Sbjct: 231 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 281
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
            L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L 
Sbjct: 282 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
              N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 374

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P   L NL  +SL    
Sbjct: 171 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 223
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
               +G    DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +
Sbjct: 224 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 275
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
           S L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
               N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 332 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P   L NL  +SL    
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 224
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
               +G    DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +
Sbjct: 225 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 276
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
           S L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
               N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 333 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
           L+ L+ L I +NK+ D S+   + +L+++E     +N ++   P   L NL  +SL    
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 224
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
               +G    DIG   S+ NL   DL++NQ S   PL    L+ L  L L  N +S+  +
Sbjct: 225 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 276
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
           S L    +L +L+LNENQ     P S  NL +L+ L L  N +    P  +  +  L  L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
               N+   V   S++NLTN+  L+  +N +S   P  L NL
Sbjct: 333 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P+ I  +  I  L L  NQ +   P  F +L NLK LYL  N L +  +        L 
Sbjct: 34  VPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
            L L  NQ T      F  L  L  L +  N+L   +P  I ++  L+ L L++NQ K +
Sbjct: 92  VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150
Query: 315 LPPSISNLTNLKELALLYN 333
              +   L++L    L  N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 103/247 (41%), Gaps = 27/247 (10%)
Query: 275 TSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNEN--QFKGVLPPSISNLTNLKELALL 331
           +S + L L  N+L  S+P  +  K+  L+ L L+ N   FKG    S    T+LK L L 
Sbjct: 28  SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 332 YNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIF---------TVSENHF 382
           +N   G I  S   L L +L         +   N+ Q     +F          +S  H 
Sbjct: 87  FN---GVITMSSNFLGLEQL-----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441
           +          +SL  + + GN+   N + +      NLTF+DLS+        + +   
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 442 PKLDTLNVSMNNI--TGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL-NSLTKLILR 498
             L  LN+S NN       P +  NS  LQ LD SLNHI+    +EL    +SL  L L 
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 499 GNQRAVT 505
            N  A T
Sbjct: 257 QNDFACT 263

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 90/221 (40%), Gaps = 25/221 (11%)
Query: 300 SLSVLDLNEN--QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNH 357
           SL  LDL+ N   FKG    S    T+LK L L +N   G I  S   L L +L      
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQL-----E 399
Query: 358 FAGYLPYNICQGGALEIF---------TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
              +   N+ Q     +F          +S  H +          +SL  + + GN+   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 409 N-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI--TGGIPREIGNS 465
           N + +      NLTF+DLS+        + +     L  LN+S NN       P +  NS
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 466 SQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT 505
             LQ LD SLNHI+    +EL    +SL  L L  N  A T
Sbjct: 520 --LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
           S   L+L  N+        F  LT L+ L LS+N++  S+PD +  K+  L++L L+EN+
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK 87
Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI--LRELLLSGNHFAGYLP 363
            + +       LT LKELAL  N L  S+P  + + +  L+++ L  N +    P
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 215 FSGPIPLFFGNL--SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
           F  P    F  L  S +K+  L  + + + + S    F  L  L L +N+       +F 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 273 NLTSLSTLRLSKNELFGSIPDEIGK-MRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331
            LT L  L LS+N L GSI   + + +  L VLDL+ N  + +   S   L NLKELAL 
Sbjct: 321 GLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 332 YNHLSGSIPPSL 343
            N L  S+P  +
Sbjct: 380 TNQLK-SVPDGI 390

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 124 PPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183
           P +   LSHL+   ID   L   +P    Q + +E   L  N L  ++P S+ +L+ +  
Sbjct: 97  PDQAFRLSHLQHXTIDAAGL-XELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154
Query: 184 LFIYDNLFSGFIPSDI------GNSKSIFNLDLSSNQFSG--PIPLFFGNLSNLKSLYLY 235
           L I        +P  +      G  + + NL     +++G   +P    NL NLKSL + 
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 236 GNSLSS--PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD 293
            + LS+  P +  L K + L DL+        Y P  FG    L  L L       ++P 
Sbjct: 215 NSPLSALGPAIHHLPKLEEL-DLR-GCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL 271
Query: 294 EIGKMRSLSVLDLN 307
           +I ++  L  LDL 
Sbjct: 272 DIHRLTQLEKLDLR 285

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 89/221 (40%), Gaps = 25/221 (11%)
Query: 300 SLSVLDLNEN--QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNH 357
           SL  LDL+ N   FKG    S     +LK L L +N   G I  S   L L +L      
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQL-----E 423
Query: 358 FAGYLPYNICQGGALEIF---------TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
              +   N+ Q     +F          +S  H +          +SL  + + GN+   
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
Query: 409 N-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI--TGGIPREIGNS 465
           N + +      NLTF+DLS+        + +     L  LN+S NN       P +  NS
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 466 SQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT 505
             LQ LD SLNHI+    +EL    +SL  L L  N  A T
Sbjct: 544 --LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 189 NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG 248
           N+    +P+ I   K    L L++NQ +   P  F +L NL+ LY   N L++       
Sbjct: 21  NIRLASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 249 KFKSLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKN 285
           K   L  L LN+N     IPR +F NL SL+ + L  N
Sbjct: 79  KLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-111
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-80
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  346 bits (889), Expect = e-111
 Identities = 127/421 (30%), Positives = 197/421 (46%), Gaps = 10/421 (2%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           + L      G +    F S   L  L L+ +   G +P +    +  LK L +  N+  G
Sbjct: 299 LDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 146 SIPPEVGQLS-SMEVFFLCSNYLNGSVPPSLGN--LSHISLLFIYDNLFSGFIPSDIGNS 202
            +P  +  LS S+    L SN  +G + P+L     + +  L++ +N F+G IP  + N 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
             + +L LS N  SG IP   G+LS L+ L L+ N L   I   L   K+L  L L+ N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNL 322
            TG IP    N T+L+ + LS N L G IP  IG++ +L++L L+ N F G +P  + + 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 323 TNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN-- 380
            +L  L L  N  +G+IP ++         ++ N  AG     I   G  +    + N  
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK 440
            FQG     +   ++    ++      G+ S       ++ F+D+S N   G I    G 
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

Query: 441 CPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
            P L  LN+  N+I+G IP E+G+   L  LDLS N + G IP+ +  L  LT++ L  N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

Query: 501 Q 501
            
Sbjct: 715 N 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  315 bits (809), Expect = 3e-99
 Identities = 118/420 (28%), Positives = 199/420 (47%), Gaps = 11/420 (2%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVG-LLSHLKFLFIDTNKLDG 145
           ++L +   SG L   +      L  LDL+ +   G +P  +  L + L  L + +N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 146 SIPPEVGQ--LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
            I P + Q   ++++  +L +N   G +PP+L N S +  L +  N  SG IPS +G+  
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
            + +L L  N   G IP     +  L++L L  N L+  I S L    +L  + L+ N+ 
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT 323
           TG IP+  G L +L+ L+LS N   G+IP E+G  RSL  LDLN N F G +P ++   +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 324 NLKELALLYNHLSGSIPPSLGNL-ILRELLLSGN--HFAGYLPYNICQGGALEIFTVSEN 380
                 +  N ++G     + N  + +E   +GN   F G     + +        ++  
Sbjct: 563 GK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK 440
            + G    +  N  S++ + ++ N L+G I + +   P L  ++L  N+  G I    G 
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

Query: 441 CPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
              L+ L++S N + G IP+ +   + L  +DLS N++ G IP E+G+  +        N
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  303 bits (778), Expect = 1e-94
 Identities = 126/491 (25%), Positives = 201/491 (40%), Gaps = 74/491 (15%)

Query: 23  SFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAG 82
           SF  + S     E   L+ +K  L   +++ LP W+          +PC + G++C D  
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLP--DKNLLPDWSSNK-------NPCTFDGVTCRD-D 50

Query: 83  RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNK 142
           +V +I L +  L+                        F  +   +  L+ L+ LF+  + 
Sbjct: 51  KVTSIDLSSKPLNVG----------------------FSAVSSSLLSLTGLESLFLSNSH 88

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP--SLGNLSHISLLFIYDNLFSGFIPSDIG 200
           ++GS+       +S+    L  N L+G V    SLG+ S +                   
Sbjct: 89  INGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK------------------ 129

Query: 201 NSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSL---GKFKSLIDL 256
                  L++SSN    P  +     L++L+ L L  NS+S   +           L  L
Sbjct: 130 ------FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 257 QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316
            ++ N+ +G +        +L  L +S N     IP  +G   +L  LD++ N+  G   
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 240

Query: 317 PSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNIC-QGGALEI 374
            +IS  T LK L +  N   G IPP    L  L+ L L+ N F G +P  +      L  
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 375 FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRNNFYGE 433
             +S NHF G +P    +C+ L  + L+ NN +G +  + L     L  +DLS N F GE
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 434 ISSNWGKC-PKLDTLNVSMNNITGGIPREIGNS--SQLQALDLSLNHIVGEIPKELGKLN 490
           +  +       L TL++S NN +G I   +  +  + LQ L L  N   G+IP  L   +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 491 SLTKLILRGNQ 501
            L  L L  N 
Sbjct: 419 ELVSLHLSFNY 429

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  251 bits (644), Expect = 4e-80
 Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 37/329 (11%)

Query: 33  NEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAG---RVINISL 89
            ++   LL+ K  L   N + L SW       ++      W G+ C+      RV N+ L
Sbjct: 5   PQDKQALLQIKKDLG--NPTTLSSW-----LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 90  RNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI-DTNKLDGSIP 148
               L                            IP  +  L +L FL+I   N L G IP
Sbjct: 58  SGLNLPKPYP-----------------------IPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208
           P + +L+ +   ++    ++G++P  L  +  +  L    N  SG +P  I +  ++  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 209 DLSSNQFSGPIPLFFGNLSNL-KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
               N+ SG IP  +G+ S L  S+ +  N L+  I  +     +L  + L+ N   G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
              FG+  +   + L+KN L   +  ++G  ++L+ LDL  N+  G LP  ++ L  L  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 328 LALLYNHLSGSIPPSLGNLILRELLLSGN 356
           L + +N+L G IP             + N
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  225 bits (576), Expect = 6e-70
 Identities = 81/299 (27%), Positives = 128/299 (42%), Gaps = 32/299 (10%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS--SPILSSLGKFKSLIDLQL-NENQF 263
             D  +  + G +         + +L L G +L    PI SSL     L  L +   N  
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT 323
            G IP +   LT L  L ++   + G+IPD + ++++L  LD + N   G LPPSIS+L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 324 NLKELALLYNHLSGSIPPSLGNL--ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENH 381
           NL  +    N +SG+IP S G+   +   + +S                         N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR------------------------NR 185

Query: 382 FQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441
             G IP +  N  +L  V L+ N L G+ S       N   I L++N+   ++    G  
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243

Query: 442 PKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
             L+ L++  N I G +P+ +     L +L++S N++ GEIP+  G L          N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (263), Expect = 3e-25
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 378 SENHFQGTIPTSVRNCTSLIRVHLNGNNLTG--NISEALAIYPNLTFIDLS-RNNFYGEI 434
               + G +  +      +  + L+G NL     I  +LA  P L F+ +   NN  G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 435 SSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK 494
                K  +L  L ++  N++G IP  +     L  LD S N + G +P  +  L +L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 495 LILRGNQ 501
           +   GN+
Sbjct: 154 ITFDGNR 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  244 bits (624), Expect = 2e-73
 Identities = 72/511 (14%), Positives = 152/511 (29%), Gaps = 62/511 (12%)

Query: 23  SFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAG 82
              ++ ++E  ++   L +   +L  +N S+    T+   N +       W         
Sbjct: 19  PIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMW--------- 69

Query: 83  RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNK 142
                        G   G S +S  R+  L L G G  G +P  +G L+ L+ L + ++ 
Sbjct: 70  -------------GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116

Query: 143 LDG----SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL--LFIYDNLFSGFIP 196
                    P  +    S E       +   +            L    I  +     I 
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDL 256
                +     +   SN  +  +      L+ L+  Y+  +   +  +    + ++    
Sbjct: 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

Query: 257 QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV-- 314
           Q  +          + NL  L+ + +        +P  +  +  + ++++  N+      
Sbjct: 236 QQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 315 ------LPPSISNLTNLKELALLYNHL-SGSIPPSLGNLI-LRELLLSGNHFAGYLPYNI 366
                           ++ + + YN+L +  +  SL  +  L  L    N   G      
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAF 349

Query: 367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY--PNLTFID 424
                L    ++ N               +  +    N L   I           ++ ID
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAID 408

Query: 425 LSRNNFYG-------EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNH 477
            S N            +     K   + ++N+S N I+          S L +++L  N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 478 IVG-------EIPKELGKLNSLTKLILRGNQ 501
           +         +  +       LT + LR N+
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  220 bits (563), Expect = 1e-64
 Identities = 67/432 (15%), Positives = 147/432 (34%), Gaps = 43/432 (9%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
           S     +   +    + +   +   V  L+ L+  ++  +        E  +  +     
Sbjct: 178 SSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN----- 231

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF------ 215
                   +      NL  ++ + +Y+      +P+ +     +  ++++ N+       
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 216 --SGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
                          ++ +Y+  N+L + P+ +SL K K L  L+   NQ  G    +FG
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFG 350

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPP-SISNLTNLKELALL 331
           +   L++L L+ N++     +  G    +  L    N+ K +       +++ +  +   
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 332 YNHLSG-------SIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
           YN +          + P+    I +  + LS N  + +       G  L    +  N   
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 384 G-------TIPTSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRNNFYGEIS 435
                       + +N   L  + L  N LT    +      P L  IDLS N+F  +  
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFP 529

Query: 436 SNWGKCPKL------DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL 489
           +       L      +  +   N      P  I     L  L +  N I  ++ +++   
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--T 586

Query: 490 NSLTKLILRGNQ 501
            +++ L ++ N 
Sbjct: 587 PNISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (553), Expect = 2e-63
 Identities = 65/432 (15%), Positives = 124/432 (28%), Gaps = 42/432 (9%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
           +     +L    +  S        E     +      +  +   +   +   L  +    
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVE 255

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLF--------SGFIPSDIGNSKSIFNLDLSSN 213
           + +      +P  L  L  + L+ +  N               +D    + I  + +  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 214 QF-SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
              + P+      +  L  L    N L   +  + G    L  L L  NQ T       G
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCG 374

Query: 273 NLTSLSTLRLSKNELFGSIPD--EIGKMRSLSVLDLNENQFKGV-------LPPSISNLT 323
               +  L  + N+L   IP+  +   +  +S +D + N+   V       L P+     
Sbjct: 375 FTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 324 NLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAG-------YLPYNICQGGALEIF 375
           N+  + L  N +S            L  + L GN               N      L   
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 376 TVSENHFQGTIPT-SVRNCTSLIRVHLNGNNLTGNISE-----ALAIYPNLTFIDLSRNN 429
            +  N                L+ + L+ N+ +   ++      L  +      D   N 
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 430 FYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL 489
              E       CP L  L +  N+I   +  +I     +  LD+  N  +      +   
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYVCPY 610

Query: 490 NSLTKLILRGNQ 501
                 +L  ++
Sbjct: 611 IEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (527), Expect = 1e-59
 Identities = 61/403 (15%), Positives = 134/403 (33%), Gaps = 40/403 (9%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL-- 143
           N +        T     + +   L  +++        +P  +  L  ++ + +  N+   
Sbjct: 229 NENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 144 ------DGSIPPEVGQLSSMEVFFLCSNYL-NGSVPPSLGNLSHISLLFIYDNLFSGFIP 196
                 D     +      +++ ++  N L    V  SL  +  + +L    N   G +P
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLID 255
           +  G+   + +L+L+ NQ +     F G    +++L    N L   P +        +  
Sbjct: 348 A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 256 LQLNENQFTGY-------IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE 308
           +  + N+           +  +     ++S++ LS N++     +       LS ++L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 309 NQFKGV-------LPPSISNLTNLKELALLYNHLSGSIPPSL--GNLI-LRELLLSGNHF 358
           N    +          +  N   L  + L +N L+  +        L  L  + LS N F
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525

Query: 359 AGYLPYNICQGGALEIFTVSE------NHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISE 412
           +   P        L+ F +        N      P  +  C SL ++ +  N++     +
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584

Query: 413 ALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT 455
                PN++ +D+  N       S      +     +  +   
Sbjct: 585 IT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 13/148 (8%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGL--LSHLKFLFIDTNKLDGSIPPEVGQLSSMEV 159
           +F +   L  +DL  + L   +  +     L +L  + +  N      P +    S+++ 
Sbjct: 483 NFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540

Query: 160 FFLC------SNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
           F +        N      P  +     ++ L I  N     +   I    +I  LD+  N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDN 597

Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSS 241
                   +           L+ +    
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  218 bits (557), Expect = 2e-63
 Identities = 94/446 (21%), Positives = 161/446 (36%), Gaps = 28/446 (6%)

Query: 78  CNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLF 137
           C  +  V + S         L          +  L+LT + L           S L  L 
Sbjct: 2   CTVSHEVADCSHLK------LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 138 IDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPS 197
           +  N +    P    +L  ++V  L  N L+     +    ++++ L +  N       +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 198 DIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK--SLID 255
                K++  LDLS N  S         L NL+ L L  N + +     L  F   SL  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG---KMRSLSVLDLNENQFK 312
           L+L+ NQ   + P  F  +  L  L L+  +L  S+ +++       S+  L L+ +Q  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 313 GVLPPSISNL--TNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQ- 368
                +   L  TNL  L L YN+L+     S   L  L    L  N+      +++   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 369 --------GGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNL 420
                     +    ++S          S +    L  +++  N++ G  S       NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 421 TFIDLSRNNFYGEISSNWG----KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476
            ++ LS +       +N          L  LN++ N I+            L+ LDL LN
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 477 HIVGEIP-KELGKLNSLTKLILRGNQ 501
            I  E+  +E   L ++ ++ L  N+
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNK 441

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (546), Expect = 6e-62
 Identities = 85/431 (19%), Positives = 146/431 (33%), Gaps = 31/431 (7%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGL---LSHLKFLFIDTNKLDGSIPPEVGQL--SS 156
            F +  RL  L L    L  ++  ++ L    + ++ L +  ++L  +       L  ++
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGN---------SKSIFN 207
           + +  L  N LN     S   L  +   F+  N         +            +S   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN--QFTG 265
             +S           F  L  L+ L +  N +     +      +L  L L+ +      
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 266 YIPRSFGNL--TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNL 322
               +F +L  + L  L L+KN++     D    +  L VLDL  N+    L       L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 323 TNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAG--YLPYNICQGGALEIFTVSE 379
            N+ E+ L YN        S   +  L+ L+L           P        L I  +S 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 380 NHFQGTIPTSVRNCTSLIRVHLNGNNLT--------GNISEALAIYPNLTFIDLSRNNFY 431
           N+        +     L  + L  NNL         G     L    +L  ++L  N F 
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 432 GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK-LN 490
                 +    +L  +++ +NN+         N   L++L+L  N I     K  G    
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 491 SLTKLILRGNQ 501
           +LT+L +R N 
Sbjct: 610 NLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  195 bits (499), Expect = 2e-55
 Identities = 93/436 (21%), Positives = 151/436 (34%), Gaps = 30/436 (6%)

Query: 87  ISLRNTGLSGTL--HGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLL--SHLKFLFIDTNK 142
           + L N  L  +L        +   +  L L+ S L  T       L  ++L  L +  N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNL---------FSG 193
           L+         L  +E FFL  N +      SL  L ++  L +  +             
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 194 FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG----K 249
                    K + +L++  N   G     F  L NLK L L  +  S   L++       
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-DEIGKMRSLSVLDLNE 308
              L  L L +N+ +     +F  L  L  L L  NE+   +   E   + ++  + L+ 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 309 NQFKGVLPPSISNLTNLKELALLYNHLSG--SIPPSLGNLI-LRELLLSGNHFAGYLPYN 365
           N++  +   S + + +L+ L L    L    S P     L  L  L LS N+ A      
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 366 ICQGGALEIFTVSENH--------FQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY 417
           +     LEI  +  N+          G     ++  + L  ++L  N       E     
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 418 PNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNS-SQLQALDLSLN 476
             L  IDL  NN     +S +     L +LN+  N IT    +  G +   L  LD+  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 477 HIVGEIPKELGKLNSL 492
                       +N +
Sbjct: 620 PFDCTCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (429), Expect = 1e-45
 Identities = 83/402 (20%), Positives = 143/402 (35%), Gaps = 51/402 (12%)

Query: 86  NISLRNTGLSGTLHG-FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLD 144
           N+SL N+ LS T +  F    +  L  LDL+ + L          L  L++ F++ N + 
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 145 GSIPPEVGQLSSMEVFFLCSNYLNGSV---------PPSLGNLSHISLLFIYDNLFSGFI 195
                 +  L ++    L  ++   S+           S   L  +  L + DN   G  
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 196 PSDIGN----------------------------SKSIFNLDLSSNQFSGPIPLFFGNLS 227
            +                                   +  L+L+ N+ S      F  L 
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 228 NLKSLYLYGNSLSSPI-LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
           +L+ L L  N +   +        +++ ++ L+ N++      SF  + SL  L L +  
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 287 L--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS-------- 336
           L    S P     +R+L++LDL+ N    +    +  L  L+ L L +N+L+        
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 337 GSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS 395
           G     L  L  L  L L  N F             L+I  +  N+      +   N  S
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 396 LIRVHLNGNNLTGNISEALA-IYPNLTFIDLSRNNFYGEISS 436
           L  ++L  N +T    +     + NLT +D+  N F     S
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  212 bits (541), Expect = 2e-60
 Identities = 80/526 (15%), Positives = 162/526 (30%), Gaps = 80/526 (15%)

Query: 33  NEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAW-YGISCNDAGRVINISLRN 91
            E A+ +  +KA           +W   +  +++ I    W +    +  G    + L N
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 92  TGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV 151
            G              R+  L L G G  G +P  +G L+ LK L   T+    S     
Sbjct: 322 NG--------------RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 152 GQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFS-----GFIPSDIGNSKSI 205
            +  + ++     + +        L     ++L  +  +  +       I  D   S   
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
             +   +N+ +  I      L+ L+ +Y   +  +   ++         D   +  +   
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYE 481

Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV---------LP 316
               S+ NL  L+ + L        +PD +  +  L  L++  N+             L 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 317 PSISNLTNLKELALLYNHLSG-----------------------SIPPSLGNLI-LRELL 352
                   ++   + YN+L                             + G  + L +L 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

Query: 353 LSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIP--TSVRNCTSLIRVHLNGNNLTGN 409
           L  N     +P + C     +E    S N  +  IP   + ++   +  V  + N +   
Sbjct: 602 LDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 410 ISEALAIYP-----NLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT-------GG 457
                         N + + LS N      +  +     + T+ +S N +T         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 458 IPREIGNSSQLQALDLSLNHIVGEIPKEL--GKLNSLTKLILRGNQ 501
                 N+  L  +DL  N +   +  +     L  L+ + +  N 
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (532), Expect = 4e-59
 Identities = 70/452 (15%), Positives = 149/452 (32%), Gaps = 48/452 (10%)

Query: 83  RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNK 142
            ++  ++        +   S  S       +L  +     I   +  L+ L+ ++   + 
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSP 459

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNS 202
                     + ++             +   S  NL  ++ + +Y+      +P  + + 
Sbjct: 460 FTYDNIAVDWEDAN-----SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 203 KSIFNLDLSSNQFSGP---------IPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKS 252
             + +L+++ N+             +         ++  Y+  N+L   P  +SL K   
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGK-MRSLSVLDLNENQF 311
           L  L    N+       +FG    L+ L+L  N++   IP++       +  L  + N+ 
Sbjct: 575 LGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 312 KGVLPP-SISNLTNLKELALLYNHLSG---SIPPSLGNLI---LRELLLSGNHFAGYLPY 364
           K +    +  ++  +  +   YN +     +I  S+ +        + LS N    +   
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 365 NICQGGALEIFTVSENHFQ-------GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAI- 416
               G  +    +S N               + +N   L  + L  N LT  +S+     
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750

Query: 417 -YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM------NNITGGIPREIGNSSQLQ 469
             P L+ +D+S N F     +      +L    +        N I    P  I     L 
Sbjct: 751 TLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 470 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            L +  N I  ++ ++L     L  L +  N 
Sbjct: 810 QLQIGSNDI-RKVDEKL--TPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 2e-53
 Identities = 61/433 (14%), Positives = 116/433 (26%), Gaps = 46/433 (10%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
           +     +L  +    S             ++  +      K   +       L  +    
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVE 497

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF---------IPSDIGNSKSIFNLDLSS 212
           L +      +P  L +L  +  L I  N              +  D      I    +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 213 NQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSF 271
           N     P       +  L  L    N +    L + G    L DL+L+ NQ         
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 272 GNLTSLSTLRLSKNELFGSIPD--EIGKMRSLSVLDLNENQFKGV-----LPPSISNLTN 324
                +  L  S N+L   IP+      +  +  +D + N+                  N
Sbjct: 616 AFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 325 LKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHF-------AGYLPYNICQGGALEIFT 376
              + L YN +             +  ++LS N               N      L    
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 377 VSENHFQGTIPTSVR--NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR------N 428
           +  N    ++    R      L  + ++ N  +            L    +        N
Sbjct: 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK 488
               +  +    CP L  L +  N+I   +  ++  + QL  LD++ N  +      +  
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 489 LNSLTKLILRGNQ 501
                  +L  ++
Sbjct: 850 YIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (451), Expect = 4e-48
 Identities = 62/403 (15%), Positives = 122/403 (30%), Gaps = 51/403 (12%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG---------SIPPEVG 152
           S+S+   L  ++L        +P  +  L  L+ L I  N+             +  +  
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 153 QLSSMEVFFLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211
               +++F++  N L       SL  +  + LL    N          G +  + +L L 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLD 603

Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRS 270
            NQ       F      ++ L    N L   P + +      +  +  + N+        
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 271 FG-----NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK-------GVLPPS 318
                     + ST+ LS NE+     +       +S + L+ N               +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 319 ISNLTNLKELALLYNHLSGSIPPSL--GNLI-LRELLLSGNHFAGYLPYNICQGGALEIF 375
             N   L  + L +N L+ S+        L  L  + +S N F+   P        L+ F
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 376 TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS 435
            +                         GN +       +   P+L  + +  N+   ++ 
Sbjct: 782 GIRHQRD------------------AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
                 P+L  L+++ N         +    +     L  +  
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (366), Expect = 4e-37
 Identities = 57/338 (16%), Positives = 106/338 (31%), Gaps = 43/338 (12%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGS 146
             +    L       S     +L  LD   + +        G    L  L +D N+++  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-E 609

Query: 147 IPPEVGQ-LSSMEVFFLCSNYLNGSVPP--SLGNLSHISLLFIYDNLFSG-----FIPSD 198
           IP +       +E      N L   +P   +  ++  +  +    N             D
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 199 IGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQL 258
                +   + LS N+        F   S + ++ L  N ++S                +
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS----------------I 712

Query: 259 NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI--GKMRSLSVLDLNENQFKGVLP 316
            EN        ++ N   L+T+ L  N+L  S+ D+     +  LS +D++ N F    P
Sbjct: 713 PENSLKP-KDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769

Query: 317 PSISNLTNLKELALLY------NHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG 369
               N + LK   + +      N +    P  +     L +L +  N     +   +   
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ 828

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
             L I  +++N       TSV          L  +   
Sbjct: 829 --LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 1/124 (0%)

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNN 453
           T    V +        I +  A+      +D     +Y    +N       +  N  ++ 
Sbjct: 252 TKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDM 310

Query: 454 ITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC 513
                  ++ N+ ++  L L+     G +P  +G+L  L  L    +   V+        
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

Query: 514 SSLE 517
            + +
Sbjct: 371 LTPD 374

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  197 bits (502), Expect = 3e-56
 Identities = 83/432 (19%), Positives = 147/432 (34%), Gaps = 38/432 (8%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN 165
                 LDL+ + L             L+ L +   ++          LS +    L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF-SGPIPLFFG 224
            +      +   LS +  L   +   +      IG+ K++  L+++ N   S  +P +F 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGKFKSL----IDLQLNENQFTGYIPRSFGNLTSLSTL 280
           NL+NL+ L L  N + S   + L     +    + L L+ N      P +F  +  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 281 RLSKNELFGSIPDE-IGKMRSLSVLDLNENQFKG---VLPPSISNLTNLKELALLYNHLS 336
            L  N    ++    I  +  L V  L   +F+    +     S L  L  L +    L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 337 ------GSIPPSLGNLI-LRELLLSGNHFAGYLPY-----------------NICQGGAL 372
                   I      L  +    L          +                         
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 373 EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNF 430
            +  ++    +G    S  +  SL  + L+ N L+  G  S++     +L ++DLS N  
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 431 YGEISSNWGKCPKLDTLNVSMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKELGKL 489
              +SSN+    +L+ L+   +N+       +  +   L  LD+S  H           L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 490 NSLTKLILRGNQ 501
           +SL  L + GN 
Sbjct: 445 SSLEVLKMAGNS 456

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  188 bits (479), Expect = 5e-53
 Identities = 88/434 (20%), Positives = 157/434 (36%), Gaps = 27/434 (6%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKF----LFIDTNK 142
           +++ +  +        FS+   L +LDL+ + +      ++ +L  +      L +  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFI---PSD 198
           +   I P   +   +    L +N+ + +V    +  L+ + +  +    F         D
Sbjct: 189 M-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 199 IGNSKSIFNLDLSSNQFS------GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKS 252
               + + NL +   + +        I   F  L+N+ S  L   ++    +        
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFG 305

Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ-- 310
              L+L   +F  +      +L  L+         F  +      + SL  LDL+ N   
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLS 360

Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG- 369
           FKG    S    T+LK L L +N +       LG   L  L    ++      +++    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRN 428
             L    +S  H +          +SL  + + GN+   N   +      NLTF+DLS+ 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK 488
                  + +     L  LN+S NN            + LQ LD SLNHI+    +EL  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 489 L-NSLTKLILRGNQ 501
             +SL  L L  N 
Sbjct: 541 FPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (456), Expect = 9e-50
 Identities = 72/412 (17%), Positives = 121/412 (29%), Gaps = 42/412 (10%)

Query: 128 GLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187
            L    K L +  N L             ++V  L    +      +  +LSH+S L + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSS 246
            N              S+  L       +       G+L  LK L +  N + S  +   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 247 LGKFKSLIDLQLNENQFTGYIPRSFGNLTSLS----TLRLSKNELFGSIPDEIGKMRSLS 302
                +L  L L+ N+           L  +     +L LS N +   I     K   L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLH 203

Query: 303 VLDLNENQFKGVLPP-SISNLTNLKELALLYNHLSGSIP---------PSLGNLILRELL 352
            L L  N     +    I  L  L+   L+                    L NL + E  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 353 LSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT---- 407
           L+   +      ++      +  F++     +     S         + L          
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPT 321

Query: 408 ---------------GNISEALAIYPNLTFIDLSRN--NFYGEISSNWGKCPKLDTLNVS 450
                          G  + +    P+L F+DLSRN  +F G  S +      L  L++S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 451 MNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQ 501
            N +   +        QL+ LD   +++           L +L  L +    
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  165 bits (419), Expect = 1e-44
 Identities = 73/405 (18%), Positives = 132/405 (32%), Gaps = 26/405 (6%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV------GLLSHLKFLFIDT 140
           ++LRN   S  +          L    L           E         L +L       
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 141 NKLDGS---IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPS 197
             LD     I      L+++  F L S  +                L + +  F  F   
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 198 DIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS--SPILSSLGKFKSLID 255
            + + K    L  +SN+          +L +L+ L L  N LS       S     SL  
Sbjct: 323 KLKSLK---RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L L+ N     +  +F  L  L  L    + L       +   +R+L  LD++    +  
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 315 LPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGAL 372
                + L++L+ L +  N    +  P     L  L  L LS        P       +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 373 EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA-IYPNLTFIDLSRNNFY 431
           ++  +S N+F        +   SL  +  + N++  +  + L     +L F++L++N+F 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 432 GEISSNW--GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS 474
                            L V +  +    P +      + +L+++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 6e-36
 Identities = 57/302 (18%), Positives = 94/302 (31%), Gaps = 28/302 (9%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
           +    L             F+    ++   L    +      +       + L +   K 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKF 316

Query: 144 -------------------DGSIPPEVGQLSSMEVFFLCSNYLN--GSVPPSLGNLSHIS 182
                               G        L S+E   L  N L+  G    S    + + 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSS 241
            L +  N     + S+    + + +LD   +          F +L NL  L +       
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 242 PILSSLGKFKSLIDLQLNENQFTGYI-PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS 300
                     SL  L++  N F     P  F  L +L+ L LS+ +L    P     + S
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 301 LSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI--LRELLLSGNHF 358
           L VL+++ N F  +       L +L+ L    NH+  S    L +    L  L L+ N F
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 359 AG 360
           A 
Sbjct: 556 AC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (342), Expect = 3e-34
 Identities = 61/345 (17%), Positives = 105/345 (30%), Gaps = 47/345 (13%)

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
           P +  + +I+   +  N +   IP ++    S  NLDLS N         F +   L+ L
Sbjct: 2   PCVEVVPNITYQCMELNFYK--IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
            L    + +                            ++ +L+ LSTL L+ N +     
Sbjct: 58  DLSRCEIQTIE------------------------DGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 293 DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL-SGSIPPSLGNLI-LRE 350
                + SL  L   E     +    I +L  LKEL + +N + S  +P    NL  L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 351 LLLSGNHFAGYLPYNICQGGALEIFTV----SENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
           L LS N        ++     + +  +    S N      P + +    L ++ L  N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFD 212

Query: 407 TGNI-SEALAIYPNLTFIDLSRNNFYGEI---SSNWGKCPKLDTLNVSMNNIT------G 456
           + N+    +     L    L    F  E      +      L  L +    +        
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            I       + + +  L    I                L L   +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (478), Expect = 8e-53
 Identities = 76/413 (18%), Positives = 143/413 (34%), Gaps = 15/413 (3%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLD-GSIPPEVGQLSSMEVF 160
                 +L  LD   + +      ++  L     L ++ N  D   I P     +  +  
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 161 FLCSNYLNGSVPPSLGN--LSHISLLFIYDNLFSGFIPSDIGNSK--SIFNLDLSSNQFS 216
                     +   L N  +  + L    D       P+        S+ +++L  + F 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS 276
                 F   S L+ L L    LS  + S L    +L  L L+ N+F      S  N  S
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 277 LSTLRLSKNELFGSIPDE-IGKMRSLSVLDLNENQFK--GVLPPSISNLTNLKELALLYN 333
           L+ L +  N     +    +  + +L  LDL+ +  +        + NL++L+ L L YN
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVR 391
                   +      L  L L+          +  Q    L++  +S +    +      
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 392 NCTSLIRVHLNGNNLTGNI---SEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN 448
              +L  ++L GN+        + +L     L  + LS  +        +     ++ ++
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 449 VSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           +S N +T      + +   +  L+L+ NHI   +P  L  L+    + LR N 
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (477), Expect = 1e-52
 Identities = 88/419 (21%), Positives = 147/419 (35%), Gaps = 16/419 (3%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
            +H  +F S  RL  L LT + L       +     LK LF     +       +    +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGN--SKSIFNLDLSSNQ 214
           +E  +L SN+++    P       + +L   +N        D+ +    +  +L+L+ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG--KFKSLIDLQLNENQFTGYIPRSFG 272
            +G I     + +  +SL   G      I   L     +SL      +       P  F 
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 273 NLTSLS--TLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELAL 330
            L  +S  ++ L K+  F    +       L  LDL        LP  +  L+ LK+L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVL 308

Query: 331 LYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQ--GTI 386
             N        S  N   L  L + GN     L     +    L    +S +  +     
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLD 445
              +RN + L  ++L+ N      +EA    P L  +DL+      + + S +     L 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 446 TLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLILRGNQ 501
            LN+S + +     +       LQ L+L  NH      ++   L  L  L  L+L    
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (447), Expect = 2e-48
 Identities = 76/436 (17%), Positives = 142/436 (32%), Gaps = 19/436 (4%)

Query: 77  SCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFL 136
              +  +  N           L+    +       L+ + + L          L +L FL
Sbjct: 9   IEKEVNKTYNCENLG------LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 137 FIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIP 196
            +   ++             ++   L +N L      +L     +  LF      S    
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL--I 254
             + N K++ +L L SN  S            LK L    N++       +   +    +
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG--KMRSLSVLDLNENQFK 312
            L LN N   G I     +     +L     +    I   +    ++SL +    +   +
Sbjct: 183 SLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 313 GVLPPSISNL--TNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG 369
            + P     L   +++ + L  ++       +      L+EL L+  H +  LP  +   
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRN 428
             L+   +S N F+     S  N  SL  + + GN     + +  L    NL  +DLS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 429 NFY--GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE- 485
           +       +        L +LN+S N              QL+ LDL+   +  +  +  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 486 LGKLNSLTKLILRGNQ 501
              L+ L  L L  + 
Sbjct: 421 FQNLHLLKVLNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (438), Expect = 3e-47
 Identities = 78/405 (19%), Positives = 140/405 (34%), Gaps = 16/405 (3%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLF-GTIPPEVGLLSHLKFLFIDTNKLDG 145
           +  +N  +   L     SS  +   L L  +G     I P     +  + L     +   
Sbjct: 158 LDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 146 SIPPEVG--QLSSMEVFFLCSNYLNGSVPPSLGNLSHISL--LFIYDNLFSGFIPSDIGN 201
            I   +    + S+ +            P     L  +S+  + +  + F     +    
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 202 SKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
              +  LDL++   S  +P     LS LK L L  N   +    S   F SL  L +  N
Sbjct: 277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 262 QFTGYI-PRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPS 318
                +      NL +L  L LS +++        ++  +  L  L+L+ N+   +   +
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 319 ISNLTNLKELALLYNHLSGSIPPS-LGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFT 376
                 L+ L L +  L      S   NL  L+ L LS +              AL+   
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 377 VSENHFQGTI---PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE 433
           +  NHF         S++    L  + L+  +L+     A      +  +DLS N     
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 434 ISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
                     +  LN++ N+I+  +P  +   SQ + ++L  N +
Sbjct: 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  163 bits (415), Expect = 4e-44
 Identities = 60/320 (18%), Positives = 100/320 (31%), Gaps = 11/320 (3%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           IP  +    S   L+ S N         F  L NL  L L    +      +      L 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
            L L  N        +     +L  L   +  +       +   ++L  L L  N    +
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 315 LPPSISNLTNLKELALLYNHLSGSIP---PSLGNLILRELLLSGNHFAGYLPYNICQGGA 371
             P       LK L    N +         SL       L L+GN  AG +         
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAV 203

Query: 372 LEIFTVSENHFQGTIPTSVRNCT--SLIRVHLNGNNLTGNISEALAIYP--NLTFIDLSR 427
            +            I   ++N T  SL        +               ++  I+L +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 428 NNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELG 487
           + F+   S+ +     L  L+++  +++  +P  +   S L+ L LS N           
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 488 KLNSLTKLILRGNQRAVTLS 507
              SLT L ++GN + + L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (391), Expect = 7e-41
 Identities = 60/358 (16%), Positives = 112/358 (31%), Gaps = 12/358 (3%)

Query: 91  NTGLSGTLHGFSFSSFPRLAYLDLTGSGL--FGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148
              L     G   S+   L                  E      ++ + +  +       
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208
                 S ++   L + +L+  +P  L  LS +  L +  N F         N  S+ +L
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 209 DLSSNQFSGPI-PLFFGNLSNLKSLYLYGNSLSSPILS--SLGKFKSLIDLQLNENQFTG 265
            +  N     +      NL NL+ L L  + + +       L     L  L L+ N+   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTN 324
               +F     L  L L+   L           +  L VL+L+ +            L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 325 LKELALLYNHLSGSIPPSLGNLI----LRELLLSGNHFAGYLPYNICQGGALEIFTVSEN 380
           L+ L L  NH          +L     L  L+LS    +    +       +    +S N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW 438
               +   ++ +   +  ++L  N+++  +   L I      I+L +N      S+ +
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 25/177 (14%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGL---LSHLKFLFIDTNKL 143
           ++L ++ L        F   P L +L+L G+        +      L  L+ L +    L
Sbjct: 430 LNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 144 DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
                     L  M    L  N L  S   +L +L  I L  +  N  S  +PS +    
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

Query: 204 SIFNLDLSSNQFS--------------------GPIPLFFGNLSNLKSLYLYGNSLS 240
               ++L  N                               N   L+ + L   +LS
Sbjct: 548 QQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (420), Expect = 9e-45
 Identities = 86/433 (19%), Positives = 152/433 (35%), Gaps = 27/433 (6%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKF----LFIDTNK 142
           +++ +  +        FS+   L ++DL+ + +      ++  L         L +  N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDIGN 201
           +   I  +  Q   +    L  N+ + ++    L NL+ + +  +    F      +I  
Sbjct: 193 I-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 202 SK--------SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
                     +I    L+         + F  L+N+ ++ L G S+    L  + K    
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 254 IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313
             L +   Q   +      +L  L +L L+ N+   SI  +   + SLS LDL+ N    
Sbjct: 310 QSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364

Query: 314 VLPPSISNL--TNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG- 369
               S S+L   +L+ L L +N     +  +   L  L+ L    +       ++     
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRN 428
             L    +S  + +          TSL  + + GN+   N  S   A   NLTF+DLS+ 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK 488
                    +    +L  LN+S NN+             L  LD S N I          
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 489 LNSLTKLILRGNQ 501
             SL    L  N 
Sbjct: 544 PKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 4e-41
 Identities = 72/437 (16%), Positives = 148/437 (33%), Gaps = 49/437 (11%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN 165
                 +DL+ + L           S L++L +   +++         L  +    L  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG-PIPLFFG 224
            +    P S   L+ +  L   +   +      IG   ++  L+++ N      +P +F 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGKFK----SLIDLQLNENQFTGYIPRSFGNLTSLSTL 280
           NL+NL  + L  N + +  ++ L   +      + L ++ N       ++F  +  L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209

Query: 281 RLSKNELFGSIPDEIGK-MRSLSVLDLNENQFKG-------------------------- 313
            L  N    +I     + +  L V  L   +FK                           
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 314 ------VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNIC 367
                         L N+  ++L    +   +     +   + L +       +   ++ 
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 368 QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAI--YPNLTFIDL 425
               L+  T++ N  +G+I        SL  + L+ N L+ +   + +     +L  +DL
Sbjct: 329 F---LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 426 SRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLSLNHIVGEIPK 484
           S N     +S+N+    +L  L+   + +          +  +L  LD+S  +   +   
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 485 ELGKLNSLTKLILRGNQ 501
               L SL  L + GN 
Sbjct: 443 IFLGLTSLNTLKMAGNS 459

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  150 bits (382), Expect = 1e-39
 Identities = 78/421 (18%), Positives = 138/421 (32%), Gaps = 52/421 (12%)

Query: 121 GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSH 180
           G++ P + ++ ++ +  +D  KL   +P ++   SS +   L  N L      S  N S 
Sbjct: 2   GSLNPCIEVVPNITYQCMD-QKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 181 ISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240
           +  L +                  + NL L+ N      P  F  L++L++L      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 241 SPILSSLGKFKSLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNEL------------ 287
           S     +G+  +L  L +  N      +P  F NLT+L  + LS N +            
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 288 ---------------FGSIPDEIGKMRSLSVLDLNENQFKGVLPP-SISNLTNLKELALL 331
                             I D+  +   L  L L  N     +    + NL  L    L+
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 332 YNHLSG---------SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHF 382
                          SI   L ++ + E  L+  +              +   +++    
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP 442
                  V        + +    L    +  L   P L  + L+ N   G IS      P
Sbjct: 298 --KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALP 350

Query: 443 KLDTLNVSMNNITGGIPR--EIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
            L  L++S N ++           ++ L+ LDLS N  +  +      L  L  L  + +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHS 409

Query: 501 Q 501
            
Sbjct: 410 T 410

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (372), Expect = 3e-38
 Identities = 77/359 (21%), Positives = 132/359 (36%), Gaps = 29/359 (8%)

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
           GS+ P +  + +I+   +   L    +P DI    S  N+DLS N         F N S 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSK--VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           L+ L L    + +    +      L +L L  N    + P SF  LTSL  L   + +L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLSGSIPPSLGNL- 346
                 IG++ +L  L++  N      LP   SNLTNL  + L YN++       L  L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 347 ----ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRNCTSLIRVHL 401
               +   L +S N    ++     QG  L   T+  N     I  T ++N   L    L
Sbjct: 178 ENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 402 NGNNLTGNISEALAIYPNLTF----------IDLSRNNFYGEISSNWGKCPKLDTLNVSM 451
                    +  L I+                 L+  N + +    +     +  ++++ 
Sbjct: 237 ILGEFKDERN--LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 452 NNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFIN 510
            +I      ++    + Q+L +    +  + P     L  L  L L  N+ +++   + 
Sbjct: 295 VSIKY--LEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (371), Expect = 4e-38
 Identities = 70/374 (18%), Positives = 118/374 (31%), Gaps = 24/374 (6%)

Query: 98  LHGFSFSSF--PRLAYLDLTGSGLFGTIPPEVGL-LSHLKFLFIDTNKLDGSIPPEVGQL 154
           +      +F   +L  L L G+     I       L+ L    +   +       E+ + 
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 155 S--------SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF 206
           S        +++ F L               L+++S + +           D+       
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQ 310

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
           +L +   Q          +L  LKSL L  N  S  I        SL  L L+ N  +  
Sbjct: 311 SLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFS 365

Query: 267 IPRSFGNL--TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNLT 323
              S+ +L   SL  L LS N     +      +  L  LD   +  K V   S   +L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 324 NLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENH 381
            L  L + Y +           L  L  L ++GN F      N+      L    +S+  
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 382 FQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441
            +            L  ++++ NNL    S       +L+ +D S N             
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 442 PKLDTLNVSMNNIT 455
             L   N++ N++ 
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 9e-19
 Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 2/170 (1%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEVGQLS 155
            +   +F     L +LD   S L           L  L +L I               L+
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 156 SMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ 214
           S+    +  N    +   +   N ++++ L +                  +  L++S N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264
                   +  L +L +L    N + +         KSL    L  N   
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  156 bits (398), Expect = 1e-43
 Identities = 79/350 (22%), Positives = 133/350 (38%), Gaps = 26/350 (7%)

Query: 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
            L+      L    +      +   L  I+ L +     +      I    ++  L+L+ 
Sbjct: 20  DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNG 75

Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
           NQ +   PL   NL  L +LY+  N ++   +S+L    +L +L LNE+  +   P    
Sbjct: 76  NQITDISPL--SNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
           NLT + +L L  N    S    +  M  L+ L + E++ K V    I+NLT+L  L+L Y
Sbjct: 130 NLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNY 186

Query: 333 NHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR 391
           N +    P  L +L  L       N      P  +     L    +  N      P +  
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA-- 240

Query: 392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451
           N + L  + +  N ++     A+     L  +++  N       S      +L++L ++ 
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNN 296

Query: 452 NNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           N +       IG  + L  L LS NHI    P  L  L+ +         
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (382), Expect = 3e-41
 Identities = 67/373 (17%), Positives = 145/373 (38%), Gaps = 51/373 (13%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
            I   L+   ++  +   +      +  L + G  +       +  L++L++L ++ N++
Sbjct: 24  GIRAVLQKASVTDVV---TQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 144 DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
               P  +  L  +   ++ +N +  +   +L NL+++  L++ ++  S   P  + N  
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
            +++L+L +N     +     N++ L  L +  + +    ++ +     L  L LN NQ 
Sbjct: 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI 189

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT 323
               P    +LTSL       N++    P  +  M  L+ L +  N+   +    ++NL+
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLS 243

Query: 324 NLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHF 382
            L  L +  N +S     ++ +L  L+ L +  N                          
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI------------------------ 277

Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP 442
             +  + + N + L  + LN N L     E +    NLT + LS+N+             
Sbjct: 278 --SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLS 333

Query: 443 KLDTLNVSMNNIT 455
           K+D+ + +   I 
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (378), Expect = 9e-41
 Identities = 69/350 (19%), Positives = 137/350 (39%), Gaps = 26/350 (7%)

Query: 130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189
           L+      +    +   +     +L S+    +    +       +  L+++  L +  N
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN 76

Query: 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGK 249
             +   P  + N   + NL + +N+ +        NL+NL+ LYL  +++S   +S L  
Sbjct: 77  QITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISD--ISPLAN 130

Query: 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
              +  L L  N           N+T L+ L ++++++    P  I  +  L  L LN N
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQ 368
           Q + +    +++LT+L       N ++   P  + N+  L  L +  N      P  +  
Sbjct: 188 QIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 369 GGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
              L    +  N    +   +V++ T L  +++  N ++      L     L  + L+ N
Sbjct: 242 LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
               E     G    L TL +S N+IT   P  + + S++ + D +   I
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 5e-38
 Identities = 76/326 (23%), Positives = 122/326 (37%), Gaps = 40/326 (12%)

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDL 256
               +        L     +  +      L ++  L + G  ++S  +  +    +L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 257 QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316
            LN NQ T   P    NL  L+ L +  N++  +    +  + +L  L LNE+    +  
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI-- 125

Query: 317 PSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAG-------------YL 362
             ++NLT +  L L  NH   S    L N+  L  L ++ +                  L
Sbjct: 126 SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184

Query: 363 PYN-------ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA 415
            YN       +    +L  FT   N      P  V N T L  + +  N +T      LA
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLA 240

Query: 416 IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL 475
               LT++++  N       +      KL  LNV  N I+      + N SQL +L L+ 
Sbjct: 241 NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 476 NHIVGEIPKELGKLNSLTKLILRGNQ 501
           N +  E  + +G L +LT L L  N 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 5e-30
 Identities = 56/274 (20%), Positives = 104/274 (37%), Gaps = 22/274 (8%)

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
             +L      ++   +         I   L +   T  +      L S++ L ++  ++ 
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI- 347
            +    I  + +L  L+LN NQ   +    +SNL  L  L +  N +  +   +L NL  
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
           LREL L+ ++ +      +     +    +  NH   +  + + N T L  + +  + + 
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK 168

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467
                 +A   +L  + L+ N       S       L      +N IT   P  + N ++
Sbjct: 169 D--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           L +L +  N I    P  L  L+ LT L +  NQ
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 380 NHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWG 439
                T   +     S+ ++ + G  +     + +    NL +++L+ N       S   
Sbjct: 30  QKASVTDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD--ISPLS 85

Query: 440 KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 499
              KL  L +  N IT      + N + L+ L L+ ++I    P  L  L  +  L L  
Sbjct: 86  NLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 500 NQRAVTLSFINKVCSSLE 517
           N     LS ++   + L 
Sbjct: 142 NHNLSDLSPLSN-MTGLN 158

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  150 bits (381), Expect = 2e-41
 Identities = 56/335 (16%), Positives = 115/335 (34%), Gaps = 24/335 (7%)

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
           GS      + S    L+   +         +   +  +N D +    +        N +N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 229 LKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
            +     G +L +   L         + L+L         P     L+ L  + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI 347
              +PD + +   L  L L  N  +  LP SI++L  L+EL++        +P  L +  
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST- 173

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
                                   L+   +     + ++P S+ N  +L  + +  + L+
Sbjct: 174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467
             +  A+   P L  +DL            +G    L  L +   +    +P +I   +Q
Sbjct: 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502
           L+ LDL     +  +P  + +L +   +++  + +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  149 bits (378), Expect = 5e-41
 Identities = 56/271 (20%), Positives = 102/271 (37%), Gaps = 23/271 (8%)

Query: 88  SLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI 147
           +     L  T      ++ P    L+L    L    P +   LSHL+ + ID   L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFN 207
           P  + Q + +E   L  N L  ++P S+ +L+ +  L I        +P  + ++ +   
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA--- 175

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
                             L NL+SL L    + S + +S+   ++L  L++  +  +  +
Sbjct: 176 ------------SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-L 221

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDL-NENQFKGVLPPSISNLTNLK 326
             +  +L  L  L L       + P   G    L  L L + +     LP  I  LT L+
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLE 280

Query: 327 ELALLYNHLSGSIPPSLGNLI-LRELLLSGN 356
           +L L        +P  +  L     +L+  +
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (355), Expect = 9e-38
 Identities = 48/318 (15%), Positives = 102/318 (32%), Gaps = 23/318 (7%)

Query: 109 LAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168
              L   GS         +           +               ++ ++       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 169 GSVPPSLGNLSHISL--LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226
            +    L + +      L +         P        + ++ + +      +P      
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQF 126

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGN---------LTSL 277
           + L++L L  N L + + +S+     L +L +        +P    +         L +L
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG 337
            +LRL    +  S+P  I  +++L  L +  +     L P+I +L  L+EL L       
Sbjct: 186 QSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 338 SIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSL 396
           + PP  G    L+ L+L        LP +I +   LE   +        +P+ +    + 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 397 IRVHLNGNNLTGNISEAL 414
             + +   +L   + +  
Sbjct: 304 CIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 1e-25
 Identities = 35/251 (13%), Positives = 70/251 (27%), Gaps = 22/251 (8%)

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
                + +    L    +       D + + +     D N            +N  N + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQI 60

Query: 328 LALLYNHLSGSIPPSLGNLI---LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
                  L  +    L +        L L         P    +   L+  T+       
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN---------FYGEIS 435
            +P +++    L  + L  N L   +  ++A    L  + +                + S
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKL 495
                   L +L +    I   +P  I N   L++L +  + +   +   +  L  L +L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 496 ILRGNQRAVTL 506
            LRG       
Sbjct: 235 DLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 2/139 (1%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
                  L  L L  +G+  ++P  +  L +LK L I  + L  ++ P +  L  +E   
Sbjct: 178 EHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
           L       + PP  G  + +  L + D      +P DI     +  LDL        +P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 222 FFGNLSNLKSLYLYGNSLS 240
               L     + +  +  +
Sbjct: 296 LIAQLPANCIILVPPHLQA 314

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (387), Expect = 4e-41
 Identities = 95/438 (21%), Positives = 164/438 (37%), Gaps = 51/438 (11%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
            +   L  T ++ T+   S +   ++  L     G+       V  L++L  +    N+L
Sbjct: 26  KMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80

Query: 144 DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
               P  +  L+ +    + +N +       L NL++++ L +++N  +   P  + N  
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 204 SIFNLDLSSNQFSGPIPLF-------------------FGNLSNLKSLYLYGNSLSSPIL 244
           ++  L+LSSN  S    L                      NL+ L+ L +  N +S   +
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--I 192

Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
           S L K  +L  L    NQ +   P   G LT+L  L L+ N+L       +  + +L+ L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDL 248

Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLP 363
           DL  NQ   +    +S LT L EL L  N +S   P  L  L  L  L L+ N      P
Sbjct: 249 DLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

Query: 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI 423
             I     L   T+  N+     P S  + T L R+    N ++     +LA   N+ ++
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWL 358

Query: 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483
               N       +      ++  L ++    T        N S    +      ++   P
Sbjct: 359 SAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 484 KELGKLNSLTKLILRGNQ 501
             +    S T+  +  N 
Sbjct: 415 ATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 1e-40
 Identities = 81/392 (20%), Positives = 145/392 (36%), Gaps = 48/392 (12%)

Query: 130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189
           L+      +    +  ++      L  +         +       +  L++++ +   +N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGK 249
             +   P  + N   + ++ +++NQ +   PL   NL+NL  L L+ N ++   +  L  
Sbjct: 79  QLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITD--IDPLKN 132

Query: 250 FKSLIDLQLNENQFTGYIP-------------------RSFGNLTSLSTLRLSKNELFGS 290
             +L  L+L+ N  +                       +   NLT+L  L +S N++  S
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--S 190

Query: 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LR 349
               + K+ +L  L    NQ   +    +  LTNL EL+L  N L      +L +L  L 
Sbjct: 191 DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 350 ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN 409
           +L L+ N  +   P  +     L    +  N      P  +   T+L  + LN N L   
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED- 301

Query: 410 ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQ 469
               ++   NLT++ L  NN      S      KL  L    N ++      + N + + 
Sbjct: 302 -ISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 470 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            L    N I    P  L  L  +T+L L    
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 3e-38
 Identities = 77/399 (19%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
             +  +L  + +  + +       +  L++L  L +  N++  +    +  L+++    L
Sbjct: 86  LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLEL 141

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
            SN ++     +L  L+ +  L   + +        + N  ++  LD+SSN+ S    L 
Sbjct: 142 SSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVL- 195

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
              L+NL+SL    N +S   ++ LG   +L +L LN NQ       +  +LT+L+ L L
Sbjct: 196 -AKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 250

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
           + N++    P  +  +  L+ L L  NQ   +    ++ LT L  L L  N L    P  
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISP-- 304

Query: 343 LGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401
           + NL  L  L L  N+ +   P +      L+      N    +  +S+ N T++  +  
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFYNNKV--SDVSSLANLTNINWLSA 360

Query: 402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE 461
             N ++      LA    +T + L+   +     +        +T+      +    P  
Sbjct: 361 GHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APAT 416

Query: 462 IGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
           I +       D++ N       +     +    +     
Sbjct: 417 ISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 8e-35
 Identities = 68/349 (19%), Positives = 124/349 (35%), Gaps = 44/349 (12%)

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
            +   L+      +     +  +     +   +  L            +    L+NL  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGV--EYLNNLTQI 73

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
               N L+   ++ L     L+D+ +N NQ     P    NLT+L+ L L  N++  +  
Sbjct: 74  NFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI--TDI 127

Query: 293 DEIGKMRSLSVLDLNENQFKGVLP-------------------PSISNLTNLKELALLYN 333
           D +  + +L+ L+L+ N    +                       ++NLT L+ L +  N
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187

Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
            +S      L  L  L  L+ + N  +   P  I     L+  +++ N        ++ +
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL--KDIGTLAS 241

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
            T+L  + L  N ++      L+    LT + L  N       S       L  L ++ N
Sbjct: 242 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 297

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            +    P  I N   L  L L  N+I    P  +  L  L +L    N+
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 5e-32
 Identities = 69/320 (21%), Positives = 115/320 (35%), Gaps = 26/320 (8%)

Query: 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241
           S     D   +                 L     +  +     +L  + +L      + S
Sbjct: 5   SATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS 60

Query: 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSL 301
             +  +    +L  +  + NQ T   P    NLT L  + ++ N++    P  +  + +L
Sbjct: 61  --IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 302 SVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGY 361
           + L L  NQ   +    + NLTNL  L L  N +S     +L  L   + L  GN     
Sbjct: 115 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDL 170

Query: 362 LPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT 421
            P  +     LE   +S N    +  + +   T+L  +    N ++      L I  NL 
Sbjct: 171 KP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE 481
            + L+ N    +          L  L+++ N I+   P  +   ++L  L L  N I   
Sbjct: 225 ELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 482 IPKELGKLNSLTKLILRGNQ 501
            P  L  L +LT L L  NQ
Sbjct: 281 SP--LAGLTALTNLELNENQ 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 1e-31
 Identities = 60/309 (19%), Positives = 122/309 (39%), Gaps = 20/309 (6%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
             ++   L  LD++ + +  +    +  L++L+ L    N++    P  +G L++++   
Sbjct: 172 PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
           L  N L      +L +L++++ L + +N  S   P  +     +  L L +NQ S   PL
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 283

Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
               L+ L +L L  N L    +S +   K+L  L L  N  +   P    +LT L  L 
Sbjct: 284 --AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
              N++  S    +  + +++ L    NQ   +    ++NLT + +L L     + +   
Sbjct: 338 FYNNKV--SDVSSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVN 393

Query: 342 SLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401
              N+ +   + +        P  I  GG+     ++ N             +  + +  
Sbjct: 394 YKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGK 451

Query: 402 NGNNLTGNI 410
                +G +
Sbjct: 452 GTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (313), Expect = 5e-31
 Identities = 76/355 (21%), Positives = 132/355 (37%), Gaps = 45/355 (12%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
              +   L  L+L+ + +  +    +  L+ L+ L       D      +  L+++E   
Sbjct: 129 PLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLD 183

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
           + SN +  S    L  L+++  L   +N  S   P  +G   ++  L L+ NQ      L
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL 239

Query: 222 --------------------FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
                                   L+ L  L L  N +S+  +S L    +L +L+LNEN
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 297

Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321
           Q     P    NL +L+ L L  N +    P  +  +  L  L    N+       S++N
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLAN 351

Query: 322 LTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSEN 380
           LTN+  L+  +N +S   P  L NL  + +L L+   +    P N      + I    +N
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKAN--VSIPNTVKN 406

Query: 381 HFQGTI-PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI 434
                I P ++ +  S     +  N  +   +E    +     I      F G +
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161
             +    L  L+L  + L       +  L +L +L +  N +    P  V  L+ ++  F
Sbjct: 282 PLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221
             +N ++     SL NL++I+ L    N  S   P  + N   I  L L+   ++     
Sbjct: 338 FYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
           +  N+S   ++     +L +P  +++    S  +  +  N  + Y        +   T+ 
Sbjct: 394 YKANVSIPNTVKNVTGALIAP--ATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIG 450

Query: 282 LSKNELFGSIP 292
                  G++ 
Sbjct: 451 KGTTTFSGTVT 461

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  139 bits (352), Expect = 3e-36
 Identities = 79/393 (20%), Positives = 135/393 (34%), Gaps = 62/393 (15%)

Query: 122 TIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNG------------ 169
            +P E   +      +   ++ + + PP  G+   M V  L                   
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
           S+P    +L  +       N  +  +P    + KS+   + +    S   P        L
Sbjct: 85  SLPELPPHLESLVA---SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LL 133

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + L +  N L    L  L     L  + ++ N     +P    +L  ++      N+L  
Sbjct: 134 EYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQL-- 185

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-L 348
               E+  +  L+ +  + N  K  LP    +L ++       N L     P L NL  L
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL--EELPELQNLPFL 239

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
             +    N     LP        LE   V +N+    +P   ++ T L       + L+ 
Sbjct: 240 TTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
                    PNL +++ S N     I S     P L+ LNVS N +   +P        L
Sbjct: 295 LP-------PNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---L 339

Query: 469 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           + L  S NH+  E+P+      +L +L +  N 
Sbjct: 340 ERLIASFNHLA-EVPELPQ---NLKQLHVEYNP 368

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (318), Expect = 1e-31
 Identities = 70/413 (16%), Positives = 129/413 (31%), Gaps = 64/413 (15%)

Query: 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP--------------- 148
              P L  L  + + L   +P     L  L     +   L    P               
Sbjct: 88  ELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208
           PE+   S +++  + +N L   +P    +L     +   +N        ++ N   +  +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLEEL--PELQNLPFLTAI 200

Query: 209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP 268
              +N     +        +L+S+    N L    L  L     L  +  + N     +P
Sbjct: 201 YADNNS----LKKLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-TLP 253

Query: 269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328
               +L +L+       +L    P+    +  L V +   +    + P       NL  L
Sbjct: 254 DLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPP-------NLYYL 302

Query: 329 ALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT 388
               N +  S+     +L   EL +S N     LP    +   LE    S NH    +P 
Sbjct: 303 NASSNEIR-SLCDLPPSL--EELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 354

Query: 389 SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN 448
             +N   L   H+  N L     +      ++   DL  N+   E+         L  L+
Sbjct: 355 LPQNLKQL---HVEYNPLR-EFPDIPE---SVE--DLRMNSHLAEVPEL---PQNLKQLH 402

Query: 449 VSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           V  N +    P    +   ++ L ++   +V          + L   +   + 
Sbjct: 403 VETNPLRE-FPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 2e-24
 Identities = 69/362 (19%), Positives = 121/362 (33%), Gaps = 52/362 (14%)

Query: 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY 166
           P L YL ++ + L     PE+   S LK + +D N L   +P     L   E     +N 
Sbjct: 131 PLLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQ 184

Query: 167 LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226
           L     P L NL  ++ ++  +N     +P    + +   ++   +N           NL
Sbjct: 185 L--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNL 236

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
             L ++Y   N L + +        SL  L + +N  T  +P    +LT L       + 
Sbjct: 237 PFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSG 291

Query: 287 LFGSIP-------------DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           L    P                    SL  L+++ N+    LP        L+ L   +N
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFN 347

Query: 334 HLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393
           HL+  +P    NL  ++L +  N      P        L +     N     +P   +N 
Sbjct: 348 HLA-EVPELPQNL--KQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQNL 398

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNN 453
             L   H+  N L     +      ++  + ++                KL+      ++
Sbjct: 399 KQL---HVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 454 IT 455
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 50/264 (18%), Positives = 92/264 (34%), Gaps = 39/264 (14%)

Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
             L +   + +  T  +P    N+ S +    + +E   + P   G+ R ++V  L +  
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 311 FKGV------------LPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNH 357
            +              LP    +L     L    N L+  +P    +L  L     +   
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 358 FAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY 417
            +   P        LE   VS N  +  +P  ++N + L  + ++ N+L   + +     
Sbjct: 126 LSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLP--- 172

Query: 418 PNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNH 477
           P+L FI    N    E        P L  +    N++   +P    +   L+++    N 
Sbjct: 173 PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI 226

Query: 478 IVGEIPKELGKLNSLTKLILRGNQ 501
           +  E   EL  L  LT +    N 
Sbjct: 227 L--EELPELQNLPFLTTIYADNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 49/263 (18%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
                 L  +    + L     PE+  L  L  ++ D N L  ++P     L ++    +
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEAL---NV 264

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPS-------------DIGNSKSIFNLD 209
             NYL   +P    +L+ + +     +  S   P+                   S+  L+
Sbjct: 265 RDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 210 LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269
           +S+N+              L+ L    N L+  +        +L  L +  N      P 
Sbjct: 324 VSNNKLIE----LPALPPRLERLIASFNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPD 374

Query: 270 SFGNLT----------------SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313
              ++                 +L  L +  N L    PD      S+  L +N  +   
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL-REFPDIPE---SVEDLRMNSERVVD 430

Query: 314 VLPPSISNLTNLKELALLYNHLS 336
               +      L++    ++H  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (356), Expect = 3e-36
 Identities = 86/423 (20%), Positives = 142/423 (33%), Gaps = 25/423 (5%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL-DGSIPPEVGQLS 155
           +L   +FS    L  L    + L       +G L  LK L +  N +    +P     L+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS---GFIPSDIGNSKSIFNLDLSS 212
           ++E   L SN +       L  L  + LL +  +L      FI         +  L L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 213 NQFSGPIP-LFFGNLSNLKSLYLYG------NSLSSPILSSLGKFKSLIDLQLNENQFTG 265
           N  S  +       L+ L+   L         +L     S+L    +L   +        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 266 Y---IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNL 322
           Y   I   F  LT++S+  L    +   + D          L+L   +F          L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSY-NFGWQHLELVNCKFGQF---PTLKL 324

Query: 323 TNLKELALLYNHLSGSIPPSLGNLILRELLLSGN--HFAGYLPYNICQGGALEIFTVSEN 380
            +LK L    N    +    +    L  L LS N   F G    +     +L+   +S N
Sbjct: 325 KSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRNNFYGEISSNWG 439
               T+ ++      L  +    +NL             NL ++D+S  +     +  + 
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 440 KCPKLDTLNVSMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 498
               L+ L ++ N+       +I      L  LDLS   +    P     L+SL  L + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 499 GNQ 501
            NQ
Sbjct: 503 SNQ 505

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (344), Expect = 1e-34
 Identities = 71/407 (17%), Positives = 123/407 (30%), Gaps = 30/407 (7%)

Query: 113 DLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVP 172
                  +  IP    L    K L +  N L             ++V  L    +     
Sbjct: 13  QCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
            +  +LSH+S L +  N              S+  L       +       G+L  LK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 233 YLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLS----TLRLSKNEL 287
            +  N + S  +        +L  L L+ N+           L  +     +L LS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPP-SISNLTNLKELALLYN---------HLSG 337
              I     K   L  L L  N     +    I  L  L+   L+               
Sbjct: 190 -NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 338 SIPPSLGNLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSL 396
           S    L NL + E  L+   +      ++      +  F++     +     S       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGW 306

Query: 397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT- 455
             + L         +  L    +L  +  + N      S      P L+ L++S N ++ 
Sbjct: 307 QHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361

Query: 456 -GGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            G   +    ++ L+ LDLS N ++  +      L  L  L  + + 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (334), Expect = 2e-33
 Identities = 94/425 (22%), Positives = 158/425 (37%), Gaps = 30/425 (7%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEV-GQL 154
            L  +SF SFP L  LDL+   +  TI       LSHL  L +  N +  S+       L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGFIPSDIGNSKSIFNLDLSSN 213
           SS++        L       +G+L  +  L +  N + S  +P    N  ++ +LDLSSN
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 214 QFSGPIPLFFGNLSNLK----SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269
           +           L  +     SL L  N ++  I     K   L  L L  N  +  + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 270 -SFGNLTSLSTLRLSKNELFGSI------PDEIGKMRSLSVLDLNENQ---FKGVLPPSI 319
                L  L   RL   E              +  + +L++ +        +   +    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSE 379
           + LTN+   +L+   +   +     N   + L L    F    P    +  +L+  T + 
Sbjct: 279 NCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ-FPTLKLK--SLKRLTFTS 334

Query: 380 NHFQGTIPTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNFYGEISSN 437
           N           +  SL  + L+ N L+  G  S++     +L ++DLS N     +SSN
Sbjct: 335 NKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 438 WGKCPKLDTLNVSMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 496
           +    +L+ L+   +N+       +  +   L  LD+S  H           L+SL  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 497 LRGNQ 501
           + GN 
Sbjct: 452 MAGNS 456

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 2e-29
 Identities = 75/433 (17%), Positives = 153/433 (35%), Gaps = 50/433 (11%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI----DTNK 142
           +++ +  +        FS+   L +LDL+ + +      ++ +L  +  L +      N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP----SLGNLSHISLLFIYDNLFSGFIPSD 198
           ++  I P   +   +    L +N+ + +V       L  L    L+             D
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 199 IGNSKSIFNLDLSSNQ------FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKS 252
               + + NL +   +      +   I   F  L+N+ S  L   ++    +        
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFG 305

Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ-- 310
              L+L   +F  +       L SL  L  + N+  G+   E+  + SL  LDL+ N   
Sbjct: 306 WQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLS 360

Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG 369
           FKG    S    T+LK L L +N +  ++  +   L  L  L    ++      +++   
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL- 418

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
                                 +  +LI + ++  +     +       +L  + ++ N+
Sbjct: 419 ----------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 430 FYGEISSNW-GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK 488
           F      +   +   L  L++S   +    P    + S LQ L+++ N +         +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 489 LNSLTKLILRGNQ 501
           L SL K+ L  N 
Sbjct: 517 LTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (287), Expect = 3e-27
 Identities = 66/371 (17%), Positives = 114/371 (30%), Gaps = 40/371 (10%)

Query: 97  TLHGFSFSSFPRLAYLDLT---GSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV-G 152
           +++        ++  L+L+          I P       L  L +  N    ++      
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 153 QLSSMEVFFLCSN---------YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
            L+ +EV  L              + S    L NL+       Y + +   I        
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL---------- 253
           ++ +  L S          +      + L L            L   K L          
Sbjct: 283 NVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 254 -----------IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLS 302
                      +DL  N   F G   +S    TSL  L LS N +  ++      +  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 303 VLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAG 360
            LD   +  K +   S+  +L NL  L + + H   +       L  L  L ++GN F  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 361 YLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419
               +I      L    +S+   +   PT+  + +SL  +++  N L            +
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 420 LTFIDLSRNNF 430
           L  I L  N +
Sbjct: 520 LQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 4e-27
 Identities = 73/369 (19%), Positives = 115/369 (31%), Gaps = 52/369 (14%)

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
           P +  + +I+   +  N +   IP ++    S  NLDLS N         F +   L+ L
Sbjct: 2   PCVEVVPNITYQCMELNFYK--IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
            L    + +    +      L  L L  N        +F  L+SL  L   +  L     
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 293 DEIGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLSGSIPPSLGNLI---- 347
             IG +++L  L++  N  +   LP   SNLTNL+ L L  N +       L  L     
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 348 ------------------------LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHF 382
                                   L +L L  N  +  +     QG   LE+  +    F
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 383 QG-----TIPTSV-RNCTSLIRVHLNGNNLTG---NISEALAIYPNLTFIDLSRNNFYG- 432
           +          S      +L         L     +I +      N++   L        
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 433 EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
           +  S       L+ +N           +       L+ L  + N   G    E+  L SL
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKG-GNAFSEVD-LPSL 349

Query: 493 TKLILRGNQ 501
             L L  N 
Sbjct: 350 EFLDLSRNG 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 59/332 (17%), Positives = 109/332 (32%), Gaps = 14/332 (4%)

Query: 63  NVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGT 122
             S  +      G++  +  R++    RN G        +      L   +   + L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 123 IPPEVGLLSHLKFL-FIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181
           +   + L + L  +       +      +       +   L +          L +L  +
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ--FSGPIPLFFGNLSNLKSLYLYGNSL 239
           +            +     +  S+  LDLS N   F G         ++LK L L  N +
Sbjct: 331 TFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 240 SSPILSSLGKFKSLIDLQLNENQFTGYIPRS-FGNLTSLSTLRLSKNELFGSIPDEIGKM 298
            + + S+    + L  L    +        S F +L +L  L +S      +       +
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 299 RSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGN 356
            SL VL +  N F+    P I + L NL  L L    L    P +  +L  L+ L ++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 357 HFAGYLPYNICQG-GALEIFTVSENHFQGTIP 387
                +P  I     +L+   +  N +  + P
Sbjct: 505 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 47/197 (23%), Positives = 68/197 (34%), Gaps = 5/197 (2%)

Query: 101 FSFSSFPRLAYLDLTGSGL--FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSME 158
           FS    P L +LDL+ +GL   G         + LK+L +  N +  ++      L  +E
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 159 VFFLCSNYLNGSVPPS-LGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG 217
                 + L      S   +L ++  L I                 S+  L ++ N F  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 218 PI-PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS 276
              P  F  L NL  L L    L     ++     SL  L +  NQ        F  LTS
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 277 LSTLRLSKNELFGSIPD 293
           L  + L  N    S P 
Sbjct: 520 LQKIWLHTNPWDCSCPR 536

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  140 bits (355), Expect = 5e-36
 Identities = 83/368 (22%), Positives = 137/368 (37%), Gaps = 45/368 (12%)

Query: 109 LAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168
            A L++  SGL  T+P  +   +H+  L I  N L  S+P    +L ++E   +  N L 
Sbjct: 42  NAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQLT 94

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
            S+P     L  +S+                     +  L +  NQ +  +P        
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS-LP---VLPPG 142

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           L+ L +  N L+S + +       L  L    NQ T  +P     L  LS   +S N+L 
Sbjct: 143 LQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQL- 193

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348
            S+P    ++  L   +   N+    LP      + LKEL +  N L+ S+P     L  
Sbjct: 194 ASLPTLPSELYKLWAYN---NRLT-SLPALP---SGLKELIVSGNRLT-SLPVLPSEL-- 243

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
           +EL++SGN     LP        L   +V  N     +P S+ + +S   V+L GN L+ 
Sbjct: 244 KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
              +AL    +          F    +S   +   L     + + +      E   + + 
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRW 356

Query: 469 QALDLSLN 476
                  N
Sbjct: 357 HMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 7e-33
 Identities = 64/294 (21%), Positives = 111/294 (37%), Gaps = 43/294 (14%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           L++  +  +  +P       ++ +L +  N+L+S + +   + ++L   +++ NQ T  +
Sbjct: 45  LNVGESGLTT-LPDCLPA--HITTLVIPDNNLTS-LPALPPELRTL---EVSGNQLT-SL 96

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
           P     L  LS        L    P        L  L +  NQ    LP        L+E
Sbjct: 97  PVLPPGLLELSIFSNPLTHL----PALPS---GLCKLWIFGNQLT-SLPVLP---PGLQE 145

Query: 328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387
           L++  N L+ S+P     L   +L    N     LP        L+  +VS+N    ++P
Sbjct: 146 LSVSDNQLA-SLPALPSEL--CKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLP 197

Query: 388 TSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTL 447
           T       L   +    +L    S        L  + +S  N    +     +   L  L
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPS-------GLKELIVS-GNRLTSLPVLPSE---LKEL 246

Query: 448 NVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            VS N +T  +P        L +L +  N +   +P+ L  L+S T + L GN 
Sbjct: 247 MVSGNRLTS-LPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 2e-29
 Identities = 70/378 (18%), Positives = 119/378 (31%), Gaps = 70/378 (18%)

Query: 129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
           L +    L +  + L  ++P  +     +    +  N L  S+P     L     L +  
Sbjct: 38  LNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRT---LEVSG 90

Query: 189 NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG 248
           N  +  +P        +                     S L  L+++GN L+S  L  L 
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS--LPVL- 139

Query: 249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE 308
               L +L +++NQ    +P     L  L       N+L  S+P        L  L +++
Sbjct: 140 -PPGLQELSVSDNQLAS-LPALPSELCKL---WAYNNQL-TSLPMLPS---GLQELSVSD 190

Query: 309 NQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQ 368
           NQ    LP   S L  L       N L+ S+P     L  +EL++SGN     LP     
Sbjct: 191 NQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPSGL--KELIVSGNRL-TSLPVLP-- 240

Query: 369 GGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
              L+   VS N    ++P       SL    +  N LT                     
Sbjct: 241 -SELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT--------------------- 274

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN---HIVGEIPKE 485
                +  +        T+N+  N ++    + +   +        +          P+E
Sbjct: 275 ----RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 486 LGKLNSLTKLILRGNQRA 503
              L+      L   +  
Sbjct: 331 TRALHLAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 6e-23
 Identities = 58/281 (20%), Positives = 98/281 (34%), Gaps = 45/281 (16%)

Query: 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG----------------SI 147
           +  P L  L+++G+ L  ++P     L  L         L                  S+
Sbjct: 78  ALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136

Query: 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFN 207
           P     L  +    +  N L  S+P     L     L+ Y+N  +  +P      +    
Sbjct: 137 PVLPPGLQELS---VSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQE--- 185

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           L +S NQ +  +P      S L  L+ Y N L+S + +       L +L ++ N+ T  +
Sbjct: 186 LSVSDNQLAS-LP---TLPSELYKLWAYNNRLTS-LPALPS---GLKELIVSGNRLT-SL 236

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
           P     L  L    +S N L  S+P        L  L +  NQ    LP S+ +L++   
Sbjct: 237 PVLPSELKELM---VSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQ 368
           + L  N LS     +L  +                  +  +
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 25/209 (11%)

Query: 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLC 163
                L  L ++ + L  ++P        L  L+   N+L  S+P     L   +   + 
Sbjct: 178 MLPSGLQELSVSDNQL-ASLPTLPS---ELYKLWAYNNRLT-SLPALPSGL---KELIVS 229

Query: 164 SNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF 223
            N L  S+P     L     L +  N  +  +P       S   L +  NQ +  +P   
Sbjct: 230 GNRLT-SLPVLPSELKE---LMVSGNRLTS-LPMLPSGLLS---LSVYRNQLTR-LPESL 280

Query: 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDL---QLNENQFTGYIPRSFGNLTSLSTL 280
            +LS+  ++ L GN LS   L +L +  S        +  +      PR    L   +  
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

Query: 281 RLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
            L           E        +    +N
Sbjct: 341 WLVPAR-----EGEPAPADRWHMFGQEDN 364

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (346), Expect = 2e-35
 Identities = 60/406 (14%), Positives = 124/406 (30%), Gaps = 21/406 (5%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
             +  R     +T S L   +        ++K L +  N L      ++   + +E+  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
            SN L       L +LS +  L + +N        ++    SI  L  ++N  S  +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS-- 115

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG-YIPRSFGNLTSLSTLR 281
                  K++YL  N ++       G    +  L L  N+           +  +L  L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
           L  N ++  +  ++     L  LDL+ N+    + P   +   +  ++L  N L   I  
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 342 SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
           +L     L    L GN F      +        + TV++   +     +   CT     H
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 401 LNGNNLTGNISEALAIYPNLTFIDLS----RNNFYGEISSNWGKCPKLDTLNVSMNNITG 456
                     +        L   + +    + +    +        +   ++        
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502
            I +          L+     +  ++         L   + +   +
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (335), Expect = 6e-34
 Identities = 63/409 (15%), Positives = 124/409 (30%), Gaps = 21/409 (5%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
                   S   +  LDL+G+ L      ++   + L+ L + +N L      ++  LS+
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLST 81

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
           +    L +NY+       L     I  L   +N  S  +    G  +   N+ L++N+ +
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKIT 133

Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT 275
               L  G  S ++ L L  N + +           +L  L L  N       +      
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA 191

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
            L TL LS N+L   +  E      ++ + L  N+   ++  ++    NL+   L  N  
Sbjct: 192 KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 336 SGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS 395
                    +   R   ++          N  +     +        +           +
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 396 LIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451
           L R      +  G+    +            ID  +  +   I     +     TL    
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 452 NNITGGIPREIGNSSQLQALDLSLNHIVG--EIPKELGKLNSLTKLILR 498
             +   +       ++L          +      +E   L  L  ++ R
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR 418

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (333), Expect = 1e-33
 Identities = 54/361 (14%), Positives = 111/361 (30%), Gaps = 19/361 (5%)

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
           +I       +  ++  +  + L  ++     +  ++  L +  N  S    +D+     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
             L+LSSN     +     +LS L++L L  N      +  L    S+  L    N  + 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISR 113

Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNLTN 324
                     +   + L+ N++      + G    +  LDL  N+   V      ++   
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
           L+ L L YN +   +   +    L+ L LS N  A ++         +   ++  N    
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
            I  ++R   +L    L GN              N     +++         N  +C   
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI----VGEIPKELGKLNSLTKLILRGN 500
              +                   L+  + +L          +  E        ++     
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 501 Q 501
           Q
Sbjct: 347 Q 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 3e-31
 Identities = 47/294 (15%), Positives = 102/294 (34%), Gaps = 15/294 (5%)

Query: 219 IPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLS 278
           I     N +  K   +  +SL   + S      ++ +L L+ N  +          T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 279 TLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS 338
            L LS N L      ++  + +L  LDLN N  +      +    +++ L    N++S  
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 339 IPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG-TIPTSVRNCTSLI 397
           +  S G    + + L+ N        +      ++   +  N            +  +L 
Sbjct: 114 VSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 398 RVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGG 457
            ++L  N +  ++     ++  L  +DLS N     +   +     +  +++  N +   
Sbjct: 173 HLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 458 IPREIGNSSQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQRAVTLSFIN 510
           I + +  S  L+  DL  N    G +     K   +  +  +  ++    +   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 6e-14
 Identities = 31/234 (13%), Positives = 62/234 (26%), Gaps = 8/234 (3%)

Query: 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY 166
            +L  LDL+ + L   + PE    + + ++ +  NKL   I   +    ++E F L  N 
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 167 LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226
            +           +  +  +           +             +         F   L
Sbjct: 249 FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 227 SNLKSLYLYGNSLSSPILSSLGK----FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
             LK       S        L           ++   + Q+   I +      +  TL  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
            K  L   + +       L          +  L  +    + L+ L  +     
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE 420

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 3e-35
 Identities = 65/334 (19%), Positives = 121/334 (36%), Gaps = 18/334 (5%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
            +  +L        + I       +   +     +   +   ++           +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + L L    +      +     ++  L +  N      P  F N+  L+ L L +N+L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 130

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGNLI 347
           S+P  I      L+ L ++ N  + +   +    T+L+ L L  N L+  +  S + +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS-- 187

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
           L    +S N  +      +    A+E    S N     +   V     L  + L  NNLT
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT 239

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467
              +  L  YP L  +DLS N     +   + K  +L+ L +S N +   +         
Sbjct: 240 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           L+ LDLS NH++  + +   + + L  L L  N 
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 5e-32
 Identities = 73/382 (19%), Positives = 129/382 (33%), Gaps = 41/382 (10%)

Query: 120 FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLS 179
           +  I   +        + ID    D     E   L++ ++    ++ +       L +  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 180 HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSL 239
            + LL + D             + +I  L +  N      P  F N+  L  L L  N L
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 240 SSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMR 299
           SS           L  L ++ N        +F   TSL  L+LS N L   +      + 
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIP 186

Query: 300 SLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFA 359
           SL   +++ N        +++    ++EL   +N ++  +   + N+ L  L L  N+  
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV-NVELTILKLQHNNL- 238

Query: 360 GYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419
                                    T    + N   L+ V L+ N L   +         
Sbjct: 239 -------------------------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479
           L  + +S N     ++      P L  L++S N++   + R      +L+ L L  N IV
Sbjct: 274 LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 480 GEIPKELGKLNSLTKLILRGNQ 501
             +   L   ++L  L L  N 
Sbjct: 332 -TLK--LSTHHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 4e-26
 Identities = 61/346 (17%), Positives = 122/346 (35%), Gaps = 46/346 (13%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           ++ +N+ +   L      SF ++  L+L    +   I          ++ L++  N +  
Sbjct: 50  VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR- 106

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
            +PP V                         N+  +++L +  N  S        N+  +
Sbjct: 107 YLPPHV-----------------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
             L +S+N         F   ++L++L L  N L+      L    SL    ++ N  + 
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS- 199

Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
               +     ++  L  S N +   +   +     L++L L  N         + N   L
Sbjct: 200 ----TLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGL 250

Query: 326 KELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
            E+ L YN L   +      +  L  L +S N     L         L++  +S NH   
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
            +  +      L  ++L+ N++    +  L+ +  L  + LS N++
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 2e-23
 Identities = 49/337 (14%), Positives = 108/337 (32%), Gaps = 59/337 (17%)

Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL 247
                  I S++      +++ +               L+N K +    +++        
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK------ 59

Query: 248 GKFKSLIDLQLNENQFTGYIPRS-FGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLD 305
                              +P +   +   +  L L+  ++   I         ++  L 
Sbjct: 60  -------------------LPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLY 99

Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL--GNLILRELLLSGNHFAGYLP 363
           +  N  + + P    N+  L  L L  N LS S+P  +      L  L +S N+    + 
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIE 157

Query: 364 YNICQG-GALEIFTVSENHFQGTIP-----------------TSVRNCTSLIRVHLNGNN 405
            +  Q   +L+   +S N     +                  +++    ++  +  + N+
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216

Query: 406 LTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI-GN 464
           +   +   +     LT + L  NN     ++     P L  +++S N +   I       
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVK 270

Query: 465 SSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             +L+ L +S N +V  +      + +L  L L  N 
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 20/241 (8%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEVGQLS 155
           +L    F + P+L  L ++ + L   I  +     + L+ L + +N+L   +      + 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIP 186

Query: 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF 215
           S+    +  N L+     +L     +  L    N  +  +   +  +  +  L L  N  
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT 275
           +     +  N   L  + L  N L   +     K + L  L ++ N+    +      + 
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
           +L  L LS N L   +     +   L  L L+ N    +    +S    LK L L +N  
Sbjct: 296 TLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 351

Query: 336 S 336
            
Sbjct: 352 D 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 11/166 (6%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSS 156
           ++         L  L L  + L  T    +     L  + +  N+L+  I      ++  
Sbjct: 217 INVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR 273

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
           +E  ++ +N L  ++      +  + +L +  N     +  +      + NL L  N   
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
               L       LK+L L  N      L +L  F+++    +++  
Sbjct: 332 ---TLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDAD 372

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (334), Expect = 3e-33
 Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 23/332 (6%)

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
                   + +     +++ GF    + N K    +   ++           +   ++ L
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKI---VTFKNSTMRKLPAALLDSFRQVELL 80

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
            L    +      +     ++  L +  N      P  F N+  L+ L L +N+L  S+P
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 139

Query: 293 DEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGNLILRE 350
             I      L+ L ++ N  + +   +    T+L+ L L  N L+  +  S + +  L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFH 196

Query: 351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI 410
             +S N  +      +    A+E    S N     +   V     L  + L  NNLT   
Sbjct: 197 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD-- 246

Query: 411 SEALAIYPNLTFIDLSRNNFYGEISSN-WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQ 469
           +  L  YP L  +DLS N    +I  + + K  +L+ L +S N +   +         L+
Sbjct: 247 TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 470 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            LDLS NH++  + +   + + L  L L  N 
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (330), Expect = 8e-33
 Identities = 68/339 (20%), Positives = 123/339 (36%), Gaps = 19/339 (5%)

Query: 164 SNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF 223
               +         L++  ++   ++       + + + + +  L+L+  Q        F
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 95

Query: 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283
                ++ LY+  N++             L  L L  N  +      F N   L+TL +S
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
            N L   I D+      SL  L L+ N+   V    +S + +L    + YN LS ++   
Sbjct: 156 NNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLAIP 210

Query: 343 LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
           +    + EL  S N     +   +     L I  +  N+   T    + N   L+ V L+
Sbjct: 211 IA---VEELDASHNSIN-VVRGPVNVE--LTILKLQHNNL--TDTAWLLNYPGLVEVDLS 262

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
            N L   +         L  + +S N     ++      P L  L++S N++   + R  
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
               +L+ L L  N IV  +   L   ++L  L L  N 
Sbjct: 321 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (273), Expect = 2e-25
 Identities = 73/420 (17%), Positives = 149/420 (35%), Gaps = 26/420 (6%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           ++ +N+ +   L      SF ++  L+L    +   I          ++ L++  N +  
Sbjct: 56  VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR- 112

Query: 146 SIPPEVGQ-LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKS 204
            +PP V Q +  + V  L  N L+        N   ++ L + +N            + S
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 205 IFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264
           + NL LSSN+ +    +    + +L    +  N      LS+L    ++ +L  + N   
Sbjct: 173 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN 224

Query: 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN 324
                    LT    L+L  N L  +    +     L  +DL+ N+ + ++      +  
Sbjct: 225 VVRGPVNVELT---ILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 325 LKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
           L+ L +  N L  ++      +  L+ L LS NH   ++  N  Q   LE   +  N   
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 384 GTIPTSVRNCTSLIRVHLNGNNLTGN-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP 442
            T+  S     +L  + L+ N+   N +             D  ++        +   C 
Sbjct: 338 -TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 394

Query: 443 KLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502
           + D   +        +   +    + Q    + + I   +      +     + L+GN++
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI-NSVQSLSHYITQQGGVPLQGNEQ 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.3 bits (229), Expect = 5e-20
 Identities = 57/282 (20%), Positives = 109/282 (38%), Gaps = 30/282 (10%)

Query: 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMR 299
             I S+L       D+ ++      Y       L +   +    + +   +P  +    R
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFR 75

Query: 300 SLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGNLI-LRELLLSGNH 357
            + +L+LN+ Q + +   + +    +++L + +N +   +PP    N+  L  L+L  N 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 358 FAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT--------- 407
            +  LP  I      L   ++S N+ +     + +  TSL  + L+ N LT         
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193

Query: 408 -------GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPR 460
                   N+   LAI   +  +D S N+    +        +L  L +  NN+T     
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLTD--TA 248

Query: 461 EIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQ 501
            + N   L  +DLS N +  +I      K+  L +L +  N+
Sbjct: 249 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 15/218 (6%)

Query: 288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGNL 346
           +  I   +        + ++              L N K +    + +   +P + L + 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 74

Query: 347 I-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN 404
             +  L L+       +          ++   +  N  +   P   +N   L  + L  N
Sbjct: 75  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-GKCPKLDTLNVSMNNITGGIPREIG 463
           +L+          P LT + +S NN    I  +       L  L +S N +T  +   + 
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LS 189

Query: 464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
               L   ++S N +       L    ++ +L    N 
Sbjct: 190 LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 222

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 3e-33
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 15/286 (5%)

Query: 219 IPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLS 278
           I     N +  K   +  +SL   + S      ++ +L L+ N  +          T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 279 TLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS 338
            L LS N L      ++  + +L  LDLN N  +      +    +++ L    N++S  
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 339 IPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG-TIPTSVRNCTSLI 397
           +  S G    + + L+ N        +      ++   +  N            +  +L 
Sbjct: 114 VSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 398 RVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGG 457
            ++L  N +  ++ +   ++  L  +DLS N     +   +     +  +++  N +   
Sbjct: 173 HLNLQYNFIY-DV-KGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 458 IPREIGNSSQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQR 502
           I + +  S  L+  DL  N    G +     K   +  +  +  ++
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  124 bits (313), Expect = 4e-32
 Identities = 50/305 (16%), Positives = 102/305 (33%), Gaps = 15/305 (4%)

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
           +I       +  ++  +  + L  ++     +  ++  L +  N  S    +D+     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
             L+LSSN     +     +LS L++L L  N      +  L    S+  L    N  + 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNIS- 112

Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNLTN 324
            +            + L+ N++      + G    +  LDL  N+   V      ++   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
           L+ L L YN +   +   +    L+ L LS N  A ++         +   ++  N    
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 385 TIPTSVRNCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443
            I  ++R   +L    L GN    G + +  +    +  +           +      P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 444 LDTLN 448
           L    
Sbjct: 288 LGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 8e-32
 Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 41/329 (12%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
           ++     N +   +  + D+     + S   ++ ++  LDLS N  S          + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + L L  N L       L    +L  L LN N              S+ TL  + N +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG-SIPPSLGNLI- 347
            +    G  +    + L  N+   +        + ++ L L  N +   +      +   
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
           L  L L  N                 I+ V                  L  + L+ N L 
Sbjct: 171 LEHLNLQYNF----------------IYDVKGQVV----------FAKLKTLDLSSNKLA 204

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSS 466
             +         +T+I L  N     I         L+  ++  N    G  R+    + 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 467 QLQALDLSLNHIVGEIPKELGKLNSLTKL 495
           ++Q +       +    +E   + +L   
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 5e-29
 Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 17/307 (5%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
             +  R     +T S L   +        ++K L +  N L      ++   + +E+  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
            SN L       L +LS +  L + +N        ++    SI  L  ++N  S  +   
Sbjct: 66  SSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-VS-- 115

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG-YIPRSFGNLTSLSTLR 281
                  K++YL  N ++       G    +  L L  N+           +  +L  L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
           L  N ++  +  ++     L  LDL+ N+    + P   +   +  ++L  N L   I  
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 342 SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
           +L     L    L GN F               + TV++   +     +   CT     H
Sbjct: 232 ALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 401 LNGNNLT 407
                  
Sbjct: 291 YGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 8e-28
 Identities = 49/263 (18%), Positives = 92/263 (34%), Gaps = 15/263 (5%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
                   S   +  LDL+G+ L      ++   + L+ L + +N L      ++  LS+
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLST 81

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
           +    L +NY+       L     I  L   +N  S  +    G  +   N+ L++N+ +
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKIT 133

Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT 275
               L  G  S ++ L L  N + +           +L  L L  N       +      
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA 191

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
            L TL LS N+L   +  E      ++ + L  N+   ++  ++    NL+   L  N  
Sbjct: 192 KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 336 SGSIPPSLGNLILRELLLSGNHF 358
                    +   R   ++    
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTV 272

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 6e-33
 Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 13/313 (4%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P  I        LDL  N+        F +  +L+ L L  N +S+    +     +L 
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
            L L  N+        F  L++L+ L +S+N++   + D +   + +L  L++ +N    
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 314 VLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQG-G 370
           +   + S L +L++L L   +L+ SIP  +L +L  L  L L   +    +     +   
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY 200

Query: 371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
            L++  +S   +  T+  +     +L  + +   NLT     A+     L F++LS N  
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 431 YGEISSNW-GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL-GK 488
              I  +   +  +L  + +    +    P      + L+ L++S N +   + + +   
Sbjct: 261 -STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS 318

Query: 489 LNSLTKLILRGNQ 501
           + +L  LIL  N 
Sbjct: 319 VGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 6e-29
 Identities = 69/330 (20%), Positives = 122/330 (36%), Gaps = 33/330 (10%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLC 163
                 LDL  + +  T+  +      HL+ L ++ N +  ++ P     L ++    L 
Sbjct: 31  PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88

Query: 164 SNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
           SN L   +P      LS+++ L I +N     +     +  ++ +L++  N         
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
           F  L++L+ L L   +L+S    +L     LI L+L           SF  L  L  L +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP- 341
           S      ++        +L+ L +       V   ++ +L  L+ L L YN +S +I   
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGS 266

Query: 342 SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
            L  L+ L+E+ L G                  +  V    F+G           L  ++
Sbjct: 267 MLHELLRLQEIQLVGGQ----------------LAVVEPYAFRGL--------NYLRVLN 302

Query: 401 LNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
           ++GN LT           NL  + L  N  
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 9e-20
 Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEV-GQL 154
            +    F+    L  LD++ + +   +   +   L +LK L +  N L   I       L
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGL 151

Query: 155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ 214
           +S+E   L    L      +L +L  + +L +     +            +  L++S   
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNL 274
           +   +        NL SL +   +L++    ++     L  L L+ N  +         L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 275 TSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
             L  ++L   +L   +       +  L VL+++ NQ   +      ++ NL+ L L  N
Sbjct: 272 LRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 334 HLS 336
            L+
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
               +   +     ++P+ I       +LDL +N+ K +     ++  +L+EL L  N +
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 336 SGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393
           S ++ P +  NL  LR L L  N                 +  +    F G         
Sbjct: 69  S-AVEPGAFNNLFNLRTLGLRSNR----------------LKLIPLGVFTGL-------- 103

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-GKCPKLDTLNVSMN 452
           ++L ++ ++ N +   +        NL  +++  N+    IS         L+ L +   
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKC 162

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507
           N+T      + +   L  L L   +I         +L  L  L +       T++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 1e-32
 Identities = 76/455 (16%), Positives = 157/455 (34%), Gaps = 62/455 (13%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG-SIPPEVGQL 154
           T+ G +F S   L +LDL+ + L  ++     G LS LK+L +  N      +      L
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 155 SSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
           ++++   + +      +       L+ ++ L I       +    + + + I +L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG- 272
           + +  + +F   LS+++ L L   +L+    S L   +    ++    + +     SF  
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 273 -----------------------------------------NLTSLSTLRLSKNELFGSI 291
                                                       ++  L + +  LF  +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI---- 347
                 +  +  + +  ++   V      +L +L+ L L  N +      +         
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 348 LRELLLSGNHFA--GYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNN 405
           L+ L+LS NH          +     L    +S N F   +P S +    +  ++L+   
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 406 LTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNS 465
           +    +        L  +D+S NN    + S     P+L  L +S N +   +P +    
Sbjct: 422 IRVVKTCIP---QTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLKT-LP-DASLF 472

Query: 466 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
             L  + +S N +         +L SL K+ L  N
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 3e-31
 Identities = 78/439 (17%), Positives = 152/439 (34%), Gaps = 50/439 (11%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-------------------------GLLS 131
            +      +   L  L L  S +  TI  +                          G LS
Sbjct: 40  YIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 132 HLKFLFIDTNKLDG-SIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDN 189
            LK+L +  N      +      L++++   + +      +       L+ ++ L I   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGK 249
               +    + + + I +L L  ++ +  + +F   LS+++ L L   +L+    S L  
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
            +    ++    + +     SF  L  L    L  +E+      E        + D N +
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPS 272

Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQ 368
           +   V          ++ L +   +L   +      L  ++ + +  +     +P +  Q
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQ 331

Query: 369 G-GALEIFTVSENHFQGTI---PTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTF 422
              +LE   +SEN                 SL  + L+ N+L       E L    NLT 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 423 IDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEI 482
           +D+SRN F   +  +     K+  LN+S   I   +   I  +  L+ LD+S N++    
Sbjct: 392 LDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNL-DSF 446

Query: 483 PKELGKLNSLTKLILRGNQ 501
                 L  L +L +  N+
Sbjct: 447 SLF---LPRLQELYISRNK 462

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (309), Expect = 4e-30
 Identities = 67/404 (16%), Positives = 138/404 (34%), Gaps = 15/404 (3%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCS 164
              +  LDL+ + +      ++   ++L+ L + ++++  +I  +    L S+E   L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSD 83

Query: 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSS-NQFSGPIPLF 222
           N+L+       G LS +  L +  N +    + S   N  ++  L + +   FS    + 
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
           F  L++L  L +   SL +    SL   + +  L L+ ++    +      L+S+  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
               L       +      S +     +   +   S + L  L    L  + +       
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-----F 258

Query: 343 LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
               +      + +           +   +    + + +    + T       + R+ + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW---GKCPKLDTLNVSMNNIT--GG 457
            + +            +L F+DLS N    E   N    G  P L TL +S N++     
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 458 IPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
               +     L +LD+S N     +P        +  L L    
Sbjct: 379 TGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (278), Expect = 4e-26
 Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 21/351 (5%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG 145
           +++L  +  +  L          + YL+L  + L       + +      +     +   
Sbjct: 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
                  +L  +  + L  + +         + +   L     +            + +I
Sbjct: 235 LTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
             L +        +   +  L  +K + +  + +     S     KSL  L L+EN    
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 266 YI---PRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS 320
                    G   SL TL LS+N L       + +  +++L+ LD++ N F   +P S  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 321 NLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN 380
               ++ L L    +   +   +    L  L +S N+        + +   L+   +S N
Sbjct: 408 WPEKMRFLNLSSTGIR-VVKTCIPQT-LEVLDVSNNNLD-SFSLFLPR---LQELYISRN 461

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY 431
             + T+P +      L+ + ++ N L            +L  I L  N + 
Sbjct: 462 KLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 60/331 (18%), Positives = 111/331 (33%), Gaps = 23/331 (6%)

Query: 11  PSLVLLILFFVSSFLITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISP 70
            S+  L L   +      S  P +E  + +K  A   S       +          ++S 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 71  CAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLL 130
             +   + N       +   N   S  +          +  L +    LF  +     LL
Sbjct: 256 VEFDDCTLN------GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 131 SHLKFLFIDTNKLDGSIPPEVGQ-LSSMEVFFLCSNYLNGSVPPS---LGNLSHISLLFI 186
             +K + ++ +K+   +P    Q L S+E   L  N +      +    G    +  L +
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 187 YDNLFS--GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
             N           +   K++ +LD+S N F  P+P        ++ L L    +     
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--- 424

Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
                 ++L  L ++ N            L  L  L +S+N+L      +      L V+
Sbjct: 425 VKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVM 478

Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHL 335
            ++ NQ K V       LT+L+++ L  N  
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 8/248 (3%)

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
           +  +             SIP  +    ++  LDL+ N+   +    +    NL+ L L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 333 NHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQG-TIPTS 389
           + ++     +  +L  L  L LS NH +  L  +      +L+   +  N +Q   + + 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 390 VRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN 448
             N T+L  + +        I     A   +L  +++   +     S +      +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 449 VSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSF 508
           + ++     +       S ++ L+L   ++       L      + +     + +V    
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 509 INKVCSSL 516
                  L
Sbjct: 239 SFNELLKL 246

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 30/221 (13%)

Query: 300 SLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHF 358
           +  V D     F  + P  ++    +K L L +N ++      L     L+ L+L  +  
Sbjct: 6   ASGVCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 359 AGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYP 418
                          I T+  + F            SL  + L+ N+L+   S       
Sbjct: 62  ---------------INTIEGDAFYSL--------GSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 419 NLTFIDLSRNNFYG-EISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLSLN 476
           +L +++L  N +    ++S +     L TL +        I R      + L  L++   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 477 HIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517
            +     + L  +  +  L L  ++ A  L     + SS+ 
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (313), Expect = 3e-30
 Identities = 84/376 (22%), Positives = 137/376 (36%), Gaps = 34/376 (9%)

Query: 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI-GNSKSIFNLDLSS 212
           L++ E   L  NY+      S   L  + LL +        I  +   N  ++  LDL S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS--LGKFKSLIDLQLNENQFTG-YIPR 269
           ++     P  F  L +L  L LY   LS  +L        K+L  L L++NQ    Y+  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 270 SFGNLTSLSTLRLSKNELFGSIPDEIG--KMRSLSVLDLNENQFKGVLPPSISNLTN--- 324
           SFG L SL ++  S N++F     E+   + ++LS   L  N     +        N   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 325 ---LKELALLYNHLSGSIPPSLGNLI-------------LRELLLSGNHFAGYLPYNICQ 368
              L+ L +  N  +  I  +  N I             +       ++       N   
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFA 261

Query: 369 GGA---LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDL 425
           G A   +    +S                 L  ++L  N +     EA     NL  ++L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 426 SRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE 485
           S N      SSN+   PK+  +++  N+I     +      +LQ LDL  N +       
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TT 376

Query: 486 LGKLNSLTKLILRGNQ 501
           +  + S+  + L GN+
Sbjct: 377 IHFIPSIPDIFLSGNK 392

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 1e-29
 Identities = 86/435 (19%), Positives = 147/435 (33%), Gaps = 40/435 (9%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEV-GQL 154
           T+   SF    +L  L+L       TI  E    L +L+ L + ++K+   + P+    L
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGL 96

Query: 155 SSMEVFFLCSNYLNGSVPPS--LGNLSHISLLFIYDNLFSGFIPSD-IGNSKSIFNLDLS 211
             +    L    L+ +V       NL  ++ L +  N           G   S+ ++D S
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 212 SNQFSGPIPLFFGNLS--NLKSLYLYGNSLSSPI------LSSLGKFKSLIDLQLNENQF 263
           SNQ           L    L    L  NSL S +        +  +   L  L ++ N +
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 264 TGYIPRSFGN------------LTSLSTLRLSKNELFGSIPDEIGKMR--SLSVLDLNEN 309
           T  I  +F N               +       + +     +    +   S+  LDL+  
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQ 368
               +       L +LK L L YN ++     +   L  L+ L LS N        N   
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 369 GGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
              +    + +NH       + +    L  + L  N LT      +   P++  I LS N
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 429 NFYGEISSNWGKCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEIPKEL- 486
                + +        + +++S N +    I   +     LQ L L+ N        +  
Sbjct: 392 K----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 487 GKLNSLTKLILRGNQ 501
            +  SL +L L  N 
Sbjct: 448 SENPSLEQLFLGENM 462

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (274), Expect = 2e-25
 Identities = 67/353 (18%), Positives = 121/353 (34%), Gaps = 24/353 (6%)

Query: 141 NKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL--LFIYDNLFSGFIPSD 198
           N +  S    +     +       + +      +   L+  S+  L +            
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 199 IGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQL 258
               K +  L+L+ N+ +      F  L NL+ L L  N L     S+      +  + L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 259 NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS 318
            +N       ++F  L  L TL L  N L       I  + S+  + L+ N+   +   +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 319 ISNLTNLKELALLYNHLSG-SIPPSLGNLI-LRELLLSGNHFAGYLPYNICQG-GALEIF 375
           ++       + L  N L    I   L  +  L+ L+L+ N F+            +LE  
Sbjct: 401 LT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 376 TVSENHFQGTIPTSV-----RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
            + EN  Q    T +        + L  ++LN N L        +    L  + L+ N  
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 431 YGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483
              + S+      L+ L++S N +    P        L  LD++ N  + E  
Sbjct: 517 --TVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.4 bits (188), Expect = 9e-15
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI- 347
            +P  +    +   L L+ N  + V   S   L  L+ L L   +   +I   +  NL  
Sbjct: 18  QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 348 LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTI--PTSVRNCTSLIRVHLNGN 404
           LR L L  +    +L  +  QG   L    +        +      RN  +L R+ L+ N
Sbjct: 75  LRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 405 NLTG-NISEALAIYPNLTFIDLSRNNFYGEISSN---WGKCPKLDTLNVSMNNITGGIPR 460
            +    +  +     +L  ID S N  +  +  +     +   L   +++ N++   +  
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 461 EIGNSSQ------LQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQRAVTLSF 508
           + G          L+ LD+S N    +I       ++      L      +   F
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 43/255 (16%), Positives = 75/255 (29%), Gaps = 35/255 (13%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV--GLLSHLKFLFIDTNKLD 144
           I L    L      +     P L  L L  +    +   +        L+ LF+  N L 
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 145 GSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKS 204
            +   E+                          LSH+ +L++  N  +   P    +  +
Sbjct: 465 LAWETELC-------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 205 IFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264
           +  L L+SN+ +          +NL+ L +  N L +P   +   F SL  L +  N+F 
Sbjct: 506 LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAP---NPDVFVSLSVLDITHNKFI 560

Query: 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN 324
                       LST     N    +I      +  +     +      +          
Sbjct: 561 CEC--------ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

Query: 325 LKELALLYNHLSGSI 339
           LK L      +    
Sbjct: 613 LKSLKFSLFIVCTVT 627

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 7e-27
 Identities = 73/355 (20%), Positives = 123/355 (34%), Gaps = 34/355 (9%)

Query: 179 SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGN 237
           +H++ + +  N  +    +     + +  L +        I    F  LS+L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 238 SLSSPILSSLGKFKSLIDLQLNENQFTGYI--PRSFGNLTSLSTLRLSKNELFGSIPDEI 295
                   +     +L  L L +    G +     F  LTSL  L L  N +    P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 296 -GKMRSLSVLDLNENQFKGVLPPSISNLT--NLKELALLYNHLSGSIPPSLGNLI----- 347
              MR   VLDL  N+ K +    + N    +   L L    L       LG        
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 348 ----LRELLLSGNHFAGYLPYNICQGGAL-EIFTVSENHFQGTIPTSVRNC--------- 393
               +  L LSGN F   +        A  +I ++  ++      +              
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 394 -----TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN-WGKCPKLDTL 447
                + +    L+ + +   +    + + +L  + L++N    +I  N +     L  L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKL 328

Query: 448 NVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQ 501
           N+S N +     R   N  +L+ LDLS NHI   +  +    L +L +L L  NQ
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 72/381 (18%), Positives = 136/381 (35%), Gaps = 43/381 (11%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLD 144
            + L    ++  L+  SFS    L +L +        I       LS L  L +D N+  
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 145 GSIPPEV-GQLSSMEVFFLCSNYLNGSVPP--SLGNLSHISLLFIYDNLFSGFIPSDI-G 200
             +       L+++EV  L    L+G+V        L+ + +L + DN      P+    
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 201 NSKSIFNLDLSSNQFS----------GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKF 250
           N +    LDL+ N+                     LS++    +    L      +  K 
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG-------------- 296
            S+  L L+ N F   + + F +  + + ++        ++    G              
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 297 -KMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGNLILREL 351
            +   +   DL++++   +L    S+ T+L++L L  N ++  I       L +L   +L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL--LKL 328

Query: 352 LLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGNNLTGN 409
            LS N   G +   + +    LE+  +S NH +  +         +L  + L+ N L   
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 410 ISEALAIYPNLTFIDLSRNNF 430
                    +L  I L  N +
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPW 407

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 5e-25
 Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 32/264 (12%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
            VP  +   ++  LL +++N       +   + + +  L LS N         F  L+NL
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
            +L L+ N L++    +      L +L L  N        +F  + SL  L L + +   
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI 347
            I +     + +L  L+L     + +  P+++ L  L EL L  NHLS +I P S   L+
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLM 231

Query: 348 -LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
            L++L +  +                 I  +  N F            SL+ ++L  NNL
Sbjct: 232 HLQKLWMIQSQ----------------IQVIERNAFDNL--------QSLVEINLAHNNL 267

Query: 407 TGNISEALAIYPNLTFIDLSRNNF 430
           T    +      +L  I L  N +
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           ++L    +   +   SF     L  L L+ + +  TI       L++L  L +  N+L  
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 146 SIPPEV-GQLSSMEVFFLCSNYLNGSVPPSL-GNLSHISLLFIYDNLFSGFIPSDI-GNS 202
           +IP      LS ++  +L +N +  S+P      +  +  L + +     +I        
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
            ++  L+L+       IP     L  L  L L GN LS+    S      L  L + ++Q
Sbjct: 185 SNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNEN 309
                  +F NL SL  + L+ N L   +P ++   +  L  + L+ N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 57/237 (24%), Positives = 87/237 (36%), Gaps = 33/237 (13%)

Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
           P         S +   +  L   +PD I    +  +L+L+ENQ + +   S  +L +L+ 
Sbjct: 36  PSVCSCSNQFSKVICVRKNL-REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 328 LALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT 385
           L L  NH+  +I   +   L  L  L L  N                 + T+    F   
Sbjct: 93  LQLSRNHIR-TIEIGAFNGLANLNTLELFDNR----------------LTTIPNGAFVYL 135

Query: 386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-GKCPKL 444
                   + L  + L  N +    S A    P+L  +DL        IS         L
Sbjct: 136 --------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             LN++M N+   IP  +    +L  LDLS NH+    P     L  L KL +  +Q
Sbjct: 188 RYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEVGQLS 155
           ++  ++F+  P L  LDL        I       LS+L++L +    L     P +  L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLI 207

Query: 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF 215
            ++   L  N+L+   P S   L H+  L++  +       +   N +S+  ++L+ N  
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 216 SGPIPLFFGNLSNLKSLYLYGNSL 239
           +      F  L +L+ ++L+ N  
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPW 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (262), Expect = 6e-25
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 20/286 (6%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
            +   L L  N ++          K+L  L L  N+ +   P +F  L  L  L LSKN+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL-SGSIPP-SLG 344
           L   +P+++   ++L  L ++EN+   V     + L  +  + L  N L S  I   +  
Sbjct: 112 L-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 345 NLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLN 402
            +  L  + ++  +    +P  +     L    +  N     +  +  +   +L ++ L+
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG------ 456
            N+++   + +LA  P+L  + L+ N    ++         +  + +  NNI+       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 457 GIPREIGNSSQLQALDLSLNHI-VGEIPKEL-GKLNSLTKLILRGN 500
             P      +    + L  N +   EI       +     + L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 3e-24
 Identities = 54/283 (19%), Positives = 109/283 (38%), Gaps = 23/283 (8%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGL-LSHLKFLFIDTNKLDG 145
           + L+N  ++  +    F +   L  L L  + +   I P     L  L+ L++  N+L  
Sbjct: 57  LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDN-LFSGFIPSDI-GNS 202
            +P ++    +++   +  N +   V       L+ + ++ +  N L S  I +      
Sbjct: 114 ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
           K +  + ++    +  IP   G   +L  L+L GN ++    +SL    +L  L L+ N 
Sbjct: 171 KKLSYIRIADTNITT-IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV------LP 316
            +     S  N   L  L L+ N+L   +P  +   + + V+ L+ N    +       P
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 317 PSISNLTNLKELALLYNHLS-GSIPPSL--GNLILRELLLSGN 356
              +   +   ++L  N +    I PS      +   + L   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (266), Expect = 7e-25
 Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 32/264 (12%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
            VP  +   S+   L + +N           +   +  L L  N         F  L++L
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
            +L L+ N L+     +      L +L L  N        +F  + SL  L L + +   
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI 347
            I +     + +L  L+L     K +  P+++ L  L+EL +  NH    I P S   L 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLS 242

Query: 348 -LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
            L++L +  +                 +  +  N F G          SL+ ++L  NNL
Sbjct: 243 SLKKLWVMNSQ----------------VSLIERNAFDGL--------ASLVELNLAHNNL 278

Query: 407 TGNISEALAIYPNLTFIDLSRNNF 430
           +    +       L  + L  N +
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 6e-20
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 13/227 (5%)

Query: 208 LDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
           +  +    S  P  +     SN + L L  N++      +      L  LQL  N     
Sbjct: 59  VVCTRRGLSEVPQGIP----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
              +F  L SL+TL L  N L   IP      +  L  L L  N  + +   + + + +L
Sbjct: 115 EVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 326 KELALL-YNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHF 382
             L L     L   I   +   L  L+ L L   +    +P N+     LE   +S NHF
Sbjct: 174 MRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230

Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
               P S    +SL ++ +  + ++     A     +L  ++L+ NN
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 7e-18
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 33/229 (14%)

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
             S +  ++  L   +P  I    +   L+L EN  + +   +  +L +L+ L L  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 336 SGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393
              I   +   L  L  L L  N                 +  +    F+          
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNW----------------LTVIPSGAFEYL-------- 146

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN-WGKCPKLDTLNVSMN 452
           + L  + L  N +    S A    P+L  +DL        IS   +     L  LN+ M 
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           NI   +P  +     L+ L++S NH     P     L+SL KL +  +Q
Sbjct: 207 NIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 12/230 (5%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           ++L    +   +   +F     L  L L  + +   I       L+ L  L +  N L  
Sbjct: 80  LNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 146 SIPPEV-GQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDI-GNS 202
            IP      LS +   +L +N +  S+P  +   +  +  L + +     +I        
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
            ++  L+L        +P     L  L+ L + GN        S     SL  L +  +Q
Sbjct: 196 FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQF 311
            +     +F  L SL  L L+ N L  S+P ++   +R L  L L+ N +
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (254), Expect = 5e-24
 Identities = 50/241 (20%), Positives = 83/241 (34%), Gaps = 34/241 (14%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS--LGKFKS 252
           +P+ I    S   L+L SN+        F  L+ L  L L  N LS     S       S
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE--IGKMRSLSVLDLNENQ 310
           L  L L+ N     +  +F  L  L  L    + L   + +      +R+L  LD++   
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH 137

Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQ 368
            +       + L++L+ L +  N    +  P     L  L  L LS              
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ----------- 186

Query: 369 GGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
                +  +S   F           +SL  ++++ NN     +       +L  +D S N
Sbjct: 187 -----LEQLSPTAFNSL--------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 429 N 429
           +
Sbjct: 234 H 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 37/269 (13%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ--FSGPIPLFFGNLS 227
           SVP  +   S  + L +  N               +  L LSSN   F G         +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRS-FGNLTSLSTLRLSKNE 286
           +LK L L  N + + + S+    + L  L    +        S F +L +L  L +S   
Sbjct: 79  SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP-SL 343
                 + I   + SL VL +  N F+    P I + L NL  L L    L   + P + 
Sbjct: 138 T-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 344 GNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
            +L  L+ L +S N+                 F++    +        +   SL  +  +
Sbjct: 196 NSLSSLQVLNMSHNN----------------FFSLDTFPY--------KCLNSLQVLDYS 231

Query: 403 GNNLTGNISEALA-IYPNLTFIDLSRNNF 430
            N++  +  + L     +L F++L++N+F
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 11/232 (4%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGL-FGTIPPEVGL-LSHLKFLFIDTNKLD 144
           + L +  L  +L    F    +L  L L+ +GL F     +     + LK+L +  N + 
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90

Query: 145 GSIPPEVGQLSSMEVFFLCSNYLNGSVPPSL-GNLSHISLLFIYDNLFSGFIPSDI-GNS 202
            ++      L  +E      + L      S+  +L ++  L I          + I    
Sbjct: 91  ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGL 149

Query: 203 KSIFNLDLSSNQFSGPI-PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
            S+  L ++ N F     P  F  L NL  L L    L     ++     SL  L ++ N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI--GKMRSLSVLDLNENQF 311
            F       +  L SL  L  S N +  +   +       SL+ L+L +N F
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 39/234 (16%)

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
           S + +R +   L  S+P  I    S + L+L  N+ + +       LT L +L+L  N L
Sbjct: 8   SGTEIRCNSKGL-TSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 336 S--GSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
           S  G    S      L+ L LS N                            T+ ++   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-------------------------TMSSNFLG 99

Query: 393 CTSLIRVHLNGNNLTGNISEALAIY--PNLTFIDLSRNNFYGEISSNW-GKCPKLDTLNV 449
              L  +    +NL   +SE        NL ++D+S  +      +        L+ L +
Sbjct: 100 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKM 157

Query: 450 SMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQ 501
           + N+       +I      L  LDLS   +  ++       L+SL  L +  N 
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 6/156 (3%)

Query: 89  LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSI 147
            +++ L        F S   L YLD++ +         +   LS L+ L +  N    + 
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 148 PPEV-GQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
            P++  +L ++    L    L   + P +  +LS + +L +  N F            S+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 206 FNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLS 240
             LD S N              S+L  L L  N  +
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (254), Expect = 6e-24
 Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 57/338 (16%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
           +VP  +      +LL + +N  S     D    + ++ L L +N+ S      F  L  L
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL-F 288
           + LY+  N L   I  +L    SL++L++++N+        F  L +++ + +  N L  
Sbjct: 105 QKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI 347
                       L+ L ++E +  G+ P  +     L EL L +N +  +I    L    
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGI-PKDL--PETLNELHLDHNKIQ-AIELEDLLRYS 217

Query: 348 -LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
            L  L L  N                 I  +                 +L  +HL+ N L
Sbjct: 218 KLYRLGLGHNQ----------------IRMIENGSLS--------FLPTLRELHLDNNKL 253

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466
           +  +   L     L  + L  NN    I+             V +N+            +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNN----ITK------------VGVNDFCP--VGFGVKRA 294

Query: 467 QLQALDLSLNHI-VGEIPKEL-GKLNSLTKLILRGNQR 502
               + L  N +   E+       +     +     ++
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 58/285 (20%), Positives = 100/285 (35%), Gaps = 22/285 (7%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNK 142
              + L+N  +S  L    F     L  L L  + +   I  +    L  L+ L+I  N 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH 113

Query: 143 LDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDN-LFSGFIPSDIG 200
           L   IPP +   SS+    +  N +   VP      L +++ + +  N L +        
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE 260
           +   +  L +S  + +G IP        L  L+L  N + +  L  L ++  L  L L  
Sbjct: 170 DGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS 320
           NQ       S   L +L  L L  N+L   +P  +  ++ L V+ L+ N    V      
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 321 ------NLTNLKELALLYNHLS-GSIPPSL--GNLILRELLLSGN 356
                        ++L  N +    + P+          +     
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 8/209 (3%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
           +  + ++L+GN +S    +S    ++L  L L+ N        +F  L  L  L LS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLG 344
              S+       +  L  L L+    + + P     L  L+ L L  N L  ++P  +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 345 NLI-LRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSV-RNCTSLIRVHL 401
           +L  L  L L GN  +  +P    +G  +L+   + +N     +     R+   L+ ++L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 402 NGNNLTGNISEALAIYPNLTFIDLSRNNF 430
             NNL+   +EALA    L ++ L+ N +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 57/229 (24%), Positives = 85/229 (37%), Gaps = 30/229 (13%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLD 144
            I L    +S  +   SF +   L  L L  + L   I       L+ L+ L +  N   
Sbjct: 36  RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 145 GSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
            S+ P     L  +    L               L  +        LF G          
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRC-----------GLQELG-----PGLFRGL--------A 129

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
           ++  L L  N         F +L NL  L+L+GN +SS    +     SL  L L++N+ 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQF 311
               P +F +L  L TL L  N L  ++P E    +R+L  L LN+N +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 44/217 (20%), Positives = 68/217 (31%), Gaps = 34/217 (15%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI- 347
           ++P  I    +   + L+ N+   V   S     NL  L L  N L+  I   +   L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
           L +L LS N                ++ +V    F G           L  +HL+   L 
Sbjct: 82  LEQLDLSDN---------------AQLRSVDPATFHG--------LGRLHTLHLDRCGLQ 118

Query: 408 GNISE-ALAIYPNLTFIDLSRNNFYGEISSN-WGKCPKLDTLNVSMNNITGGIPREI-GN 464
             +          L ++ L  N     +  + +     L  L +  N I+  +P      
Sbjct: 119 -ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRG 175

Query: 465 SSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
              L  L L  N +    P     L  L  L L  N 
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (252), Expect = 7e-23
 Identities = 60/400 (15%), Positives = 118/400 (29%), Gaps = 60/400 (15%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN 165
             + + L L    L  ++P  +     +  L I  N L  S+P     L  ++    C N
Sbjct: 58  INQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDN 110

Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225
            L+ ++P    +L H   L + +N  +  +P      +    ++  +NQ +  +P     
Sbjct: 111 RLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---INADNNQLTM-LP---EL 158

Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLST----LR 281
            ++L+ L +  N L+   L  L   +SL  L ++ N     +P                R
Sbjct: 159 PTSLEVLSVRNNQLTF--LPEL--PESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
             +N +   IP+ I  +     + L +N     +  S+S  T   +              
Sbjct: 214 CRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY------------- 259

Query: 342 SLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401
               +         N     L   +               F     + V           
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLADAV------------TAWFPENKQSDVSQIWHAFEHEE 307

Query: 402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE 461
           + N  +    + L+   +       R      +++   K      L      +       
Sbjct: 308 HANTFS-AFLDRLSDTVSARNTSGFREQ----VAAWLEKLSASAELRQQSFAVAADATES 362

Query: 462 IGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             +   L   +L    +V     E    N    L+  G +
Sbjct: 363 CEDRVALTWNNLRKTLLV-HQASEGLFDNDTGALLSLGRE 401

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 3e-19
 Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 31/241 (12%)

Query: 267 IPRSFGNLTSLSTLRLS--KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN 324
           I     N  SLS        +  +        K    ++   N N+   +L   +  +  
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
             EL L   +LS S+P +L    +  L ++ N     LP        LE     +N    
Sbjct: 61  FSELQLNRLNLS-SLPDNLPPQ-ITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS- 113

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
           T+P    +   L    ++ N LT  + E  A    L +I+   N     ++        L
Sbjct: 114 TLPELPASLKHL---DVDNNQLT-MLPELPA---LLEYINADNNQ----LTMLPELPTSL 162

Query: 445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK----LILRGN 500
           + L+V  N +T  +P    +   L+ALD+S N +   +P    + +   +       R N
Sbjct: 163 EVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 501 Q 501
           +
Sbjct: 218 R 218

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 1e-22
 Identities = 69/352 (19%), Positives = 114/352 (32%), Gaps = 26/352 (7%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
            VP  L      ++L I  N  S    SDI +   +  L +S N+        F     L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRS--FGNLTSLSTLRLSKNEL 287
           + L L  N L      S     +L  L L+ N F   +P    FGN++ L  L LS   L
Sbjct: 72  EYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 288 FGSIPDEIGKMRSLSV-LDLNENQFKGVLPPSISNLTNLK-ELALLYNHLSGSIPP---- 341
             S    I  +    V L L E   +   P  + +       +    N     I      
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 342 SLGNLILRELLL----SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC---T 394
           ++ NL L  +      +   +   +   +     L   T++           +      T
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 395 SLIRVHLNGNNLTGNISEALAIYPN-----LTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
           ++    ++   L G +      Y       L+   +  + F    S  +     ++  N 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 450 SMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           +++             S    LD S N +   + +  G L  L  LIL+ NQ
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 1e-20
 Identities = 79/426 (18%), Positives = 148/426 (34%), Gaps = 73/426 (17%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPP--EVGLLSHLKFLFIDTNKLDGSIPPEVGQLS 155
           L   S      L +LDL+ +  F  +P   E G +S LKFL + T  L+ S    +  L+
Sbjct: 81  LVKISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 156 SMEVFFLCSNYLNGSVPP-SLGNLSHISL--LFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
             +V  +          P  L + +  SL  +F  +  F   +   +    ++   ++  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 213 NQFSGPIPLFFGNLSNL------KSLYLYGNSLSSPILSSLGKFK--------SLIDLQL 258
                    F   L+ L       +L L     +      + +          S+ +++L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 259 NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS 318
                      S  +L +LS  ++  +              ++++ +   +  + V    
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 319 ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVS 378
            S ++    L    N L+ ++  + G+L                                
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHL-------------------------------- 347

Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNF-YGEIS 435
                          T L  + L  N L     I+E      +L  +D+S+N+  Y E  
Sbjct: 348 ---------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKL 495
            +      L +LN+S N +T  I R +    +++ LDL  N I   IPK++ KL +L +L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449

Query: 496 ILRGNQ 501
            +  NQ
Sbjct: 450 NVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 70/399 (17%), Positives = 121/399 (30%), Gaps = 31/399 (7%)

Query: 128 GLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187
            L      L I  N +      ++  LS + +  +  N +             +  L + 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQF-SGPIPLFFGNLSNLKSLYLYGNSLSSPILSS 246
            N     I      + ++ +LDLS N F + PI   FGN+S LK L L    L    +  
Sbjct: 78  HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 247 LGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDL 306
           +        L +    +          L   +T  L            I  +   +V +L
Sbjct: 135 IAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 307 NENQFKGVL-----------PPSISNLTNLKELALLYNHLSGSIPPSLGNLI----LREL 351
             +  K VL              +     L  L L     + +    +  L+    +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 352 LLSGNHFAGYLPYNICQGG-----ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
            +S     G L +           AL I  V  + F           +++   +   +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG--- 463
                   +       +D S N     +  N G   +L+TL + MN +   + +      
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT 371

Query: 464 NSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQ 501
               LQ LD+S N +  +  K       SL  L +  N 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 53/314 (16%), Positives = 99/314 (31%), Gaps = 39/314 (12%)

Query: 129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL---SHISLLF 185
           L +    L  +      SI  ++     +    L +     +    +  L   + +    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 186 IYDNLFSGFIPSDIGNS-----KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240
           I +    G +     +      K++    + S+ F  P    +   SN+       +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG---K 297
              +    K    + L  + N  T  +  + G+LT L TL L  N+L   +        +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQ 372

Query: 298 MRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGN 356
           M+SL  LD+++N           S   +L  L +  N L+ +I   L    ++ L L  N
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-IKVLDLHSN 431

Query: 357 HFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAI 416
                                       +IP  V    +L  +++  N L          
Sbjct: 432 KIK-------------------------SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

Query: 417 YPNLTFIDLSRNNF 430
             +L  I L  N +
Sbjct: 467 LTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 28/217 (12%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
               + +  F  +   + T SG           +S    L    N L  ++    G L+ 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF- 215
           +E   L  N L          LS I+ +     +            KS+  LD+S N   
Sbjct: 350 LETLILQMNQLK--------ELSKIAEMT--TQM------------KSLQQLDISQNSVS 387

Query: 216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT 275
                       +L SL +  N L+  I   L     +  L L+ N+    IP+    L 
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLE 444

Query: 276 SLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQF 311
           +L  L ++ N+L  S+PD I  ++ SL  + L+ N +
Sbjct: 445 ALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 56/369 (15%), Positives = 116/369 (31%), Gaps = 38/369 (10%)

Query: 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS 192
                    ++  +      QL+++      ++ +  +    +  L+ ++ L    N  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77

Query: 193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKS 252
                D+  + ++  L   SN+ +    L    L+ L  L    N L+      + +   
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTK---LDVSQNPL 128

Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312
           L  L    N  T        + T L+ L    N+    +   +     L+ LD + N+  
Sbjct: 129 LTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 313 GVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGAL 372
            +    +S    L  L    N+++  +  +  N+ L  L  S N        ++     L
Sbjct: 184 EL---DVSQNKLLNRLNCDTNNIT-KLDLN-QNIQLTFLDCSSNKLTEI---DVTPLTQL 235

Query: 373 EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG 432
             F  S N     +  S    + L  +H    +L       + +  N   I         
Sbjct: 236 TYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRK 287

Query: 433 EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
               +     +L  L+     IT     ++  + +L  L L+   +  E+   +     L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341

Query: 493 TKLILRGNQ 501
             L      
Sbjct: 342 KSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 65/395 (16%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
                 L  L  T + +  T+   +   ++L +L  D+NKL  ++   V  L+ +     
Sbjct: 60  IEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNC 113

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
            +N L       +     ++ L    N  +     D+ ++  +  LD   N+    +   
Sbjct: 114 DTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD-- 165

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
               + L +L    N ++      + + K L  L  + N  T  +         L+ L  
Sbjct: 166 VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDC 219

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
           S N+L   I   +  +  L+  D + N    +    +S L+ L  L  +   L   I  +
Sbjct: 220 SSNKL-TEID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EIDLT 272

Query: 343 LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
             N  L      G                           +      V + T L  +   
Sbjct: 273 -HNTQLIYFQAEGC--------------------------RKIKELDVTHNTQLYLLDCQ 305

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISS-NWGKCPKLDTLNVSMNNITGGIPRE 461
              +T      L+  P L ++ L+       ++  +     KL +L+    +I       
Sbjct: 306 AAGIT---ELDLSQNPKLVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHIQ-DFS-S 356

Query: 462 IGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 496
           +G    L     +    +  +PKE    NSLT  +
Sbjct: 357 VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 29/276 (10%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
            N  S       + +    S  +  +L  L  + +  T         LT L+ L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
           +  ++   + +  +L+ L  + N+   +    ++ LT L  L    N L+  +  S  N 
Sbjct: 76  I-TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS-QNP 127

Query: 347 ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
           +L  L  + N        ++     L       N  +      V   T L  +  + N +
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKI 182

Query: 407 TGNISEALAIYPNLTFIDLSRNNFYGEISS-NWGKCPKLDTLNVSMNNITGGIPREIGNS 465
           T      ++    L  ++   NN    I+  +  +  +L  L+ S N +T  I   +   
Sbjct: 183 T---ELDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 466 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           +QL   D S+N +  E+   +  L+ LT L      
Sbjct: 233 TQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTD 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 55/333 (16%), Positives = 100/333 (30%), Gaps = 35/333 (10%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
           +     S    L YL    + L   +   V  L+ L +L  DTNKL   +   V Q   +
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLL 129

Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG 217
                  N L       +    +  L  +  +L       D+     +  LD S N+ + 
Sbjct: 130 TYLNCARNTLT-----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184

Query: 218 PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSL 277
              L       L  L    N+++      L +   L  L  + N+ T         LT L
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI---DVTPLTQL 235

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG 337
           +    S N L   +   +  +  L+ L   +     +    +++ T L            
Sbjct: 236 TYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIK 289

Query: 338 SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLI 397
            +  +  N  L  L             ++ Q   L    ++       +   V + T L 
Sbjct: 290 ELDVT-HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 398 RVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
            +     ++  + S  +   P L     +    
Sbjct: 343 SLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 39/277 (14%), Positives = 71/277 (25%), Gaps = 42/277 (15%)

Query: 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
              S   +L  LD   +        +V   + L  L    NK+      +V Q   +   
Sbjct: 142 IDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRL 196

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
              +N +       L     ++ L    N  +     D+     +   D S N  +  + 
Sbjct: 197 NCDTNNITK---LDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELD 249

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSS-------------------LGKFKSLIDLQLNEN 261
                LS L +L+     L    L+                    +     L  L     
Sbjct: 250 --VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307

Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321
             T  +         L  L L+  EL   +   +     L  L       +     S+  
Sbjct: 308 GIT-ELD--LSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAHIQDF--SSVGK 359

Query: 322 LTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHF 358
           +  L            ++P          + +S +  
Sbjct: 360 IPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
           +     S    L  L+   + +      ++     L FL   +NKL   I   V  L+ +
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG 217
             F    N L   +  S   LS ++ L             D+ ++  +        +   
Sbjct: 236 TYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIK 289

Query: 218 PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSL 277
            + +   + + L  L      ++      L +   L+ L LN  + T  +     + T L
Sbjct: 290 ELDV--THNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331
            +L      +       +GK+ +L+     E Q    +P       +L      
Sbjct: 342 KSLSCVNAHI-QDFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSP 392

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 7e-22
 Identities = 59/281 (20%), Positives = 100/281 (35%), Gaps = 28/281 (9%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
             +KSL L  N ++    S L +  +L  L L  N        SF +L SL  L LS N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP--- 341
           L  ++       + SL+ L+L  N +K +   S+ S+LT L+ L +        I     
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 342 -SLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
             L  L   EL +  +    Y P ++     +    +        +   V   +S+  + 
Sbjct: 171 AGLTFL--EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 401 LNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPR 460
           L   +L       L          L              K      + ++  ++   + +
Sbjct: 229 LRDTDLDTFHFSEL---STGETNSLI-------------KKFTFRNVKITDESLFQ-VMK 271

Query: 461 EIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGN 500
            +   S L  L+ S N +   +P     +L SL K+ L  N
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 20/227 (8%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGY 266
           LDLS N  S     +F  LS+L  L L GN   +    S       L  L++        
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 267 IP-RSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTN 324
           I  + F  LT L  L +  ++L  S   +    ++++S L L+  Q   +L   +   ++
Sbjct: 165 IQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
           ++ L L    L       L       L+               +        +++     
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLI---------------KKFTFRNVKITDESLF- 267

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY 431
            +   +   + L+ +  + N L            +L  I L  N + 
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 3e-19
 Identities = 46/243 (18%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 130 LSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSL-GNLSHISLLFIY 187
             +L+ L + +N ++ +I  +    L S+E   L  NYL  ++  S    LS ++ L + 
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLL 132

Query: 188 DNLFSGFIPSDI-GNSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILS 245
            N +     + +  +   +  L + +      I    F  L+ L+ L +  + L S    
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL----FGSIP----DEIGK 297
           SL   +++  L L+  Q    +       +S+  L L   +L    F  +     + + K
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 298 MRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGNLI-LRELLLSG 355
             +   + + +      +   ++ ++ L EL    N L  S+P      L  L+++ L  
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310

Query: 356 NHF 358
           N +
Sbjct: 311 NPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 23/243 (9%)

Query: 97  TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEV--GQ 153
           T+   SFSS   L +LDL+ + L   +       LS L FL +  N    ++        
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 154 LSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
           L+ +++  + +      +       L+ +  L I  +    + P  + + +++ +L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
            Q    + +F    S+++ L L    L +                 + ++ +     S  
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLI 251

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
              +   ++++   LF  +   + ++  L  L+ + NQ K V       LT+L+++ L  
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 333 NHL 335
           N  
Sbjct: 311 NPW 313

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 27/170 (15%), Positives = 68/170 (40%), Gaps = 7/170 (4%)

Query: 168 NGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS 227
           + +   +   ++ ++ + + +   +    + I  + +I +L +++   +   P+    LS
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPI--SGLS 88

Query: 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
           NL+ L + G  ++S  + +L    SL  L ++ +     I      L  ++++ LS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG 337
              I   +  +  L  L++  +         I +   L +L      + G
Sbjct: 149 ITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
           K+  N  L  +  +    +    +++L  + L   +++   L+ +    ++ DL +N   
Sbjct: 23  KAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIH 77

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNL 322
            T Y P     L++L  LR+   ++       +  + SL++LD++ +     +   I+ L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 323 TNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNH 357
             +  + L YN     I P L  L  L+ L +  + 
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 37/209 (17%)

Query: 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
           FK+ ++  L ++        +   + SL+ + L+   +  +    I    ++  L +N  
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNI 76

Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG 369
                 P  IS L+NL+ L ++   ++    P+L  L                       
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT---------------------- 112

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
            +L +  +S +    +I T +     +  + L+ N    +I   L   P L  +++  + 
Sbjct: 113 -SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170

Query: 430 FYGEIS--SNWGKCPKLDTLNVSMNNITG 456
               +         PKL+ L      I G
Sbjct: 171 ----VHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 28/213 (13%), Positives = 78/213 (36%), Gaps = 37/213 (17%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-L 348
           +IPD     ++     L ++        + + + +L  + L   +++  +   +     +
Sbjct: 16  NIPDS--TFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT-DLTG-IEYAHNI 68

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
           ++L ++  H   Y                            +   ++L R+ + G ++T 
Sbjct: 69  KDLTINNIHATNY--------------------------NPISGLSNLERLRIMGKDVTS 102

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
           +    L+   +LT +D+S +     I +     PK++++++S N     I   +    +L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL 161

Query: 469 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           ++L++  + +       +     L +L      
Sbjct: 162 KSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
                 +  L +       T    +  LS+L+ L I    +     P +  L+S+ +  +
Sbjct: 62  IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
             +  + S+   +  L  ++ + +  N     I   +     + +L++  +       + 
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGI- 177

Query: 223 FGNLSNLKSLYLYGNSLSS 241
             +   L  LY +  ++  
Sbjct: 178 -EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451
              SL  + L   N+T ++   +    N+  + ++  +      +       L+ L +  
Sbjct: 42  QMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMG 97

Query: 452 NNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK 511
            ++T      +   + L  LD+S +     I  ++  L  +  + L  N     +  +  
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.0 bits (221), Expect = 7e-20
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 11/190 (5%)

Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
           ++PP L      ++L + +NL   F  + +     +  L+L   + +  + +  G L  L
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVL 79

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
            +L L  N L S +        +L  L ++ N+ T     +   L  L  L L  NEL  
Sbjct: 80  GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-K 137

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPPSL-GNL 346
           ++P  +      L  L L  N     LP  + + L NL  L L  N L  +IP    G+ 
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 347 ILRELLLSGN 356
           +L    L GN
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 1e-17
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 20/211 (9%)

Query: 201 NSKSIFNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
              S   ++      +  P  L      +   L+L  N L +  L++L  +  L  L L+
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI 319
             + T  +    G L  L TL LS N+L  S+P     + +L+VLD++ N+    LP   
Sbjct: 64  RAELT-KLQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 320 -SNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGNHFAGYLPYNICQG-GALE 373
              L  L+EL L  N L  ++PP          L +L L+ N+    LP  +  G   L+
Sbjct: 120 LRGLGELQELYLKGNELK-TLPPGLLTPTPK--LEKLSLANNNLTE-LPAGLLNGLENLD 175

Query: 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGN 404
              + EN    TIP        L    L+GN
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 57/234 (24%)

Query: 270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA 329
               + S   +   K  L  ++P ++   +  ++L L+EN        ++   T L +L 
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTS 389
           L    L+  +       +L  L LS N                            ++P  
Sbjct: 62  LDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-------------------------SLPLL 95

Query: 390 VRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
            +   +L  + ++ N LT                 L      G          +L  L +
Sbjct: 96  GQTLPALTVLDVSFNRLT----------------SLPLGALRG--------LGELQELYL 131

Query: 450 SMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQ 501
             N +   +P  +   + +L+ L L+ N++  E+P  L   L +L  L+L+ N 
Sbjct: 132 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 75/401 (18%), Positives = 123/401 (30%), Gaps = 37/401 (9%)

Query: 128 GLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSN---YLNGSVPPSLGNLSHISL 183
            L    K L +  N +   +       LS + V  L  N    L+  V     +L +   
Sbjct: 49  DLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY--- 104

Query: 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF-SGPIPLFFGNLSNLKSLYLYGNSLSSP 242
           L +  N     I        S+ +LDLS N F   P+   FGNL+ L  L L        
Sbjct: 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ- 160

Query: 243 ILSSLGKFKSL----IDLQLNENQFTGYIPRSFGNL-TSLSTLRLSKNELFGSIPDEIGK 297
               L     L    I L L      G    S     T++  L    N LF    +    
Sbjct: 161 --LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 298 MR---SLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS------IPPSLGNLIL 348
                 LS + LN+   + ++            L +   H+  +      +        +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 349 RELLLSGNHFAG-----YLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
             L +               Y+     +L I  V    F  +          +    L+ 
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT--GGIPRE 461
           ++             + TF++ ++N F   +        +L TL +  N +     +   
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 462 IGNSSQLQALDLSLNHI-VGEIPKELGKLNSLTKLILRGNQ 501
             N S L+ LD+SLN +      +      S+  L L  N 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 36/266 (13%)

Query: 174 SLGNLSHISLLFIYDNLFSGFIPSDIGNS-----KSIFNLDLSSNQFSGPIPLFFGNLSN 228
                  +  L IY+   +  I  +         KS+    + +  F       +   + 
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           +    L  +      +       S   L   +N FT  + +    L  L TL L +N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL- 389

Query: 289 GSIPDEIGKMRSLSVLDLNENQFK----GVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
            +        +++S L+  +             + +   ++  L L  N L+GS+   L 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 345 NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN 404
              ++ L L  N                            +IP  V +  +L  +++  N
Sbjct: 450 PK-VKVLDLHNNRIM-------------------------SIPKDVTHLQALQELNVASN 483

Query: 405 NLTGNISEALAIYPNLTFIDLSRNNF 430
            L            +L +I L  N +
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 66/426 (15%), Positives = 135/426 (31%), Gaps = 53/426 (12%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPP--EVGLLSHLKFLFIDTNKLDGSIPPEVGQLS 155
           L   S      L +LDL+ +     +P   E G L+ L FL +   K        V  L 
Sbjct: 112 LQNISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 156 SMEVFF-LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNS----KSIFNLDL 210
              +   L S ++ G    SL   +   L  ++       +  ++  +      + N+ L
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 211 SSNQFSGPIPLFFGNL--SNLKSLYLYGNSLSSPILSSLGKFK--------SLIDLQLNE 260
           +       +           L ++ L     +      L +F         ++ +L + E
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS 320
                    S   L SL    +       S          +++  L+ +    +      
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 321 NLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSE 379
           + ++   L    N  + S+      L  L+ L+L  N               +      +
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLD 409

Query: 380 NHFQ----GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS 435
                        +     S++ ++L+ N LTG++   L   P +  +DL  N       
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN------- 460

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTK 494
                  ++ ++           P+++ +   LQ L+++ N +   +P     +L SL  
Sbjct: 461 -------RIMSI-----------PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501

Query: 495 LILRGN 500
           + L  N
Sbjct: 502 IWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 8/173 (4%)

Query: 95  SGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQL 154
           +  +H     S     +L+ T +    ++      L  L+ L +  N L  +        
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT 399

Query: 155 SSMEVFFLCSNYLN----GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210
            +M         LN     +   +      I +L +  N+ +G +   +     +  LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDL 457

Query: 211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
            +N+    IP    +L  L+ L +  N L S       +  SL  + L++N +
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.4 bits (221), Expect = 5e-19
 Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 47/276 (17%)

Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288
           +         +    +     F   I   L +   T  +      L S+  +  + +++ 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI- 55

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI- 347
            S+   I  + +++ L LN N+   + P  ++NL NL  L L  N +   +   L +L  
Sbjct: 56  KSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKK 110

Query: 348 LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
           L+ L L  N                 I  ++           + +   L  ++L  N +T
Sbjct: 111 LKSLSLEHN----------------GISDIN----------GLVHLPQLESLYLGNNKIT 144

Query: 408 GNISEALAIYPNLTFIDLSRNNFYGEIS--SNWGKCPKLDTLNVSMNNITGGIPREIGNS 465
            +I+  L+    L  + L  N     IS         KL  L +S N+I+    R +   
Sbjct: 145 -DIT-VLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGL 196

Query: 466 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             L  L+L     + +       L     +      
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 3e-18
 Identities = 44/283 (15%), Positives = 97/283 (34%), Gaps = 43/283 (15%)

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDL 256
                       +L     +  +      L+++  +    + + S  +  +    ++  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 70

Query: 257 QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316
            LN N+ T   P    NL +L  L L +N++       +  ++ L  L L  N    +  
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGISDI-- 124

Query: 317 PSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIF 375
             + +L  L+ L L  N ++  I   L  L  L  L L  N                +I 
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDN----------------QIS 166

Query: 376 TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS 435
            +            +   T L  ++L+ N+++ ++   LA   NL  ++L       +  
Sbjct: 167 DIV----------PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPI 214

Query: 436 SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
           ++       +T+  +  ++    P  I +    +  ++  +  
Sbjct: 215 NHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 2e-15
 Identities = 62/298 (20%), Positives = 110/298 (36%), Gaps = 21/298 (7%)

Query: 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
           F   +F      +L    +  T       L+ +  +  + + +  S+   +  L ++   
Sbjct: 15  FPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
           FL  N L   + P L NL ++  LF+ +N       S + + K + +L L  N  S    
Sbjct: 71  FLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDING 126

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL 280
           L   +L  L+SLYL  N ++   ++ L +   L  L L +NQ +  +P     LT L  L
Sbjct: 127 L--VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG--- 337
            LSKN +  S    +  +++L VL+L   +         SNL     +      L     
Sbjct: 181 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 338 -SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEI-FTVSENHFQGTIPTSVRNC 393
            S         ++  L    +   ++ Y     G  +  F          + T   + 
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 19/280 (6%)

Query: 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
           F   +      +    S +  T       L  +  L      +  +I   V  L+++   
Sbjct: 13  FPDPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
            L  N +  +    L NL+ I+ L +  N         I   +SI  LDL+S Q +   P
Sbjct: 69  ELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL 280
           L    LSNL+ LYL  N +++  +S L    +L  L +   Q +   P    NL+ L+TL
Sbjct: 125 L--AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
           +   N++  S    +  + +L  + L  NQ   V    ++N +NL  + L    ++ + P
Sbjct: 179 KADDNKI--SDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT-NQP 233

Query: 341 PSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN 380
               N ++   ++ G   A   P  I   G      ++ N
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 55/301 (18%), Positives = 104/301 (34%), Gaps = 69/301 (22%)

Query: 203 KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
            +   +    +  +  +     +L  + +L  +G  +++  +  +    +LI L+L +NQ
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQ 74

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNL 322
            T   P    NLT ++ L LS N L       I  ++S+  LDL   Q   V    ++ L
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDV--TPLAGL 128

Query: 323 TNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHF 382
           +NL+ L L  N ++ +I P                                         
Sbjct: 129 SNLQVLYLDLNQIT-NISP----------------------------------------- 146

Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS--SNWGK 440
                  +   T+L  + +    ++ +++  LA    LT +    N     IS  S    
Sbjct: 147 -------LAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNK----ISDISPLAS 193

Query: 441 CPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
            P L  +++  N I+   P  + N+S L  + L+   I  +       L     +     
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

Query: 501 Q 501
            
Sbjct: 252 A 252

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 52/246 (21%), Positives = 80/246 (32%), Gaps = 45/246 (18%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           IP ++    S  NLDLS N         F +   L+ L L    + +             
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------- 66

Query: 255 DLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFK 312
                       I   ++ +L+ LSTL L+ N +  S+       + SL  L   E    
Sbjct: 67  ------------IEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLA 113

Query: 313 GVLPPSISNLTNLKELALLYNHLSGSIPP-----SLGNLILRELLLSGNHFAGYLPYNIC 367
            +    I +L  LKEL + +N +  S        +L N  L  L LS N     +     
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN--LEHLDLSSNKIQ-SIYCTDL 169

Query: 368 QG-GALEIFTV----SENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTF 422
           +    + +  +    S N     I         L  + L+ N L            +L  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 423 IDLSRN 428
           I L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 51/249 (20%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L L+ N        SF +   L  L LS+ E+  +I D     +  LS L L  N  +  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 315 LPPSI-SNLTNLKELALLYNHLSGSIPPSL-GNLI-LRELLLSGNHFAGYLPYNICQGGA 371
           L     S L++L++L  +  +L+ S+     G+L  L+EL ++ N               
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP------ 142

Query: 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY 431
            E F+               N T+L  + L+ N +       L +   +  ++LS     
Sbjct: 143 -EYFS---------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----- 181

Query: 432 GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNS 491
                          L++S+N +   I        +L+ L L  N +         +L S
Sbjct: 182 ---------------LDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 492 LTKLILRGN 500
           L K+ L  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 52/240 (21%), Positives = 75/240 (31%), Gaps = 60/240 (25%)

Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
           SF SFP L  LDL+   +  TI       LSHL  L +  N +  S+             
Sbjct: 47  SFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALG---------- 94

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
                         L +L                             L       +    
Sbjct: 95  ----------AFSGLSSLQK---------------------------LVAVETNLASLEN 117

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSL 277
              G+L  LK L +  N + S        F +L +L+   L+ N+           L  +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 278 ----STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
                +L LS N +   I     K   L  L L+ NQ K V       LT+L+++ L  N
Sbjct: 176 PLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNN 453
            S   + L+ N L    S +   +P L  +DLSR          +     L TL ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 454 ITGGIPREI-GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           I   +        S LQ L     ++       +G L +L +L +  N 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 41/223 (18%), Positives = 68/223 (30%), Gaps = 66/223 (29%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGN 345
            IPD +    S   LDL+ N  + +   S  +   L+ L L    +  +I      SL +
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGN 404
           L    L+L+GN                            ++        +SL ++     
Sbjct: 78  L--STLILTGNPIQ-------------------------SLALGAFSGLSSLQKLVAVET 110

Query: 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISS--NWGKCPKLDTLNVSMNNITGGIPREI 462
           NL    +  +     L  ++++ N     I S         L                  
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNL----IQSFKLPEYFSNL------------------ 148

Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSLT----KLILRGNQ 501
              + L+ LDLS N I      +L  L+ +      L L  N 
Sbjct: 149 ---TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 58/335 (17%), Positives = 103/335 (30%), Gaps = 79/335 (23%)

Query: 224 GNLSNLKSLYLYGNSLSS----PILSSLGKFKSLIDLQLNENQFTG----YIPRSFGNLT 275
              S ++   L  +++++     + + L +  S+ ++ L+ N        ++  +  +  
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 276 SLSTLRLSKNELFGSIPDEIG-----------KMRSLSVLDLNENQF--KGVLP--PSIS 320
            L     S     G + DEI            K   L  + L++N F      P    +S
Sbjct: 61  DLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 321 NLTNLKELALLYNHLS--------------GSIPPSLGNLILRELLLSGNHFAGYLPYNI 366
             T L+ L L  N L                    +     LR ++   N         +
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--------L 171

Query: 367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT-----GNISEALAIYPNLT 421
             G   E                 ++   L  V +  N +        + E LA    L 
Sbjct: 172 ENGSMKEWAKT------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 422 FIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITG-GIPR-----EIGNSSQLQAL 471
            +DL  N F       ++      P L  L ++   ++  G            +  LQ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 472 DLSLNHIVGEIPKELG-----KLNSLTKLILRGNQ 501
            L  N I  +  + L      K+  L  L L GN+
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 64/302 (21%)

Query: 177 NLSHISLLFIYDNLFSG--FIPSDIGNSKSIFNLDLSSNQFS--GPIPL--FFGNLSNLK 230
             S I    + D +      +   +     +  + LS N F      PL  F    + L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 231 SLYLYGNSLS-------------SPILSSLGKFKSLIDLQLNENQFTG----YIPRSFGN 273
            LYL+ N L                +         L  +    N+          ++F +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 274 LTSLSTLRLSKNELF-----GSIPDEIGKMRSLSVLDLNENQF--KGV--LPPSISNLTN 324
              L T+++ +N +        + + +   + L VLDL +N F   G   L  ++ +  N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 325 LKELALLYNHLS-------GSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTV 377
           L+EL L    LS             L N+ L+ L L  N         I       + TV
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--------EIELDAVRTLKTV 297

Query: 378 SENHFQGTIPTSVRNCTSLIRVHLNGNNLT------GNISEALAIYPNLTFIDLSRNNFY 431
            +                L+ + LNGN  +        I E  +        +L      
Sbjct: 298 IDE-----------KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

Query: 432 GE 433
            +
Sbjct: 347 TD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 57/219 (26%)

Query: 319 ISNLTNLKELALLYNHLSGSIPPSLGNLI-----LRELLLSGNHFAGYLPYNICQGGALE 373
           ++  + ++  +L  + ++     S+  ++     ++E++LSGN         I    A  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN--------TIGTEAARW 51

Query: 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL----------TGNISEALAIYPNLTFI 423
           +               + +   L     +                 + +AL   P L  +
Sbjct: 52  LSEN------------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 424 DLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNIT-------------GGIPREIGNSS 466
            LS N F       +     K   L+ L +  N +                + ++  N+ 
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 467 QLQALDLSLNHI----VGEIPKELGKLNSLTKLILRGNQ 501
            L+++    N +    + E  K       L  + +  N 
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 6e-18
 Identities = 50/268 (18%), Positives = 79/268 (29%), Gaps = 37/268 (13%)

Query: 83  RVINISLRNTGLSGTL--HGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDT 140
            +  +++R   +   +            L  L L    + GT PP +   +      ++ 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 141 NKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL--LFIYDNLFSGFIPSD 198
             +                    S     +    L       L  L I       F    
Sbjct: 129 RNV--------------------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 199 IGNSKSIFNLDLSSNQFSGPIPL----FFGNLSNLKSLYLYGN---SLSSPILSSLGKFK 251
           +    ++  LDLS N   G   L           L+ L L      + S    +      
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 252 SLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
            L  L L+ N         S    + L++L LS   L   +P  +     LSVLDL+ N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNR 285

Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGS 338
                 PS   L  +  L+L  N    S
Sbjct: 286 LDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 5e-17
 Identities = 54/295 (18%), Positives = 90/295 (30%), Gaps = 33/295 (11%)

Query: 218 PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRS---FGNL 274
            + L+ G  S    L            + + K  SL  L +   +    I         +
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN------LTNLKEL 328
           + L  L L   E+ G+ P  + +     +  LN          +            LK L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 329 ALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387
           ++   H        +     L  L LS N   G                          P
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-----------------ERGLISALCP 197

Query: 388 TSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLDT 446
                   L   +      +G  S   A    L  +DLS N+      + +     +L++
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 447 LNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           LN+S   +   +P+ +   ++L  LDLS N +    P     L  +  L L+GN 
Sbjct: 258 LNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRL-DRNPSPDE-LPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 9e-17
 Identities = 52/277 (18%), Positives = 80/277 (28%), Gaps = 18/277 (6%)

Query: 98  LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
           L+G   S    L  +D        T   +   L  L                 V  +S +
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISL--LFIYDNLFSGF--IPSDIGN--SKSIFNLDLS 211
           +   L +  + G+ PP L   +   L  L + +  ++      +++       +  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI----LSSLGKFKSLIDLQLNENQFT--- 264
                            L +L L  N               KF +L  L L         
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLT 323
           G           L  L LS N L  +           L+ L+L+    K V P  +    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--A 274

Query: 324 NLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAG 360
            L  L L YN L    P       +  L L GN F  
Sbjct: 275 KLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 54/315 (17%), Positives = 90/315 (28%), Gaps = 55/315 (17%)

Query: 176 GNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP---LFFGNLSNLKSL 232
           G  S   LL   D        +DI  S S+  L + + +    I    L    +S L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 233 YLYGNSLSSPILSSLGKF--KSLIDLQLNENQFTGYIPR----SFGNLTSLSTLRLSKNE 286
            L    ++      L +     L  L L    +                 L  L +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
                 +++    +LS LDL++N   G                 L + L     P+L   
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG--------------LISALCPLKFPTL--- 203

Query: 347 ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
             + L L                              G           L  + L+ N+L
Sbjct: 204 --QVLALRNAGM---------------------ETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 407 TGNISEALAIYP-NLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNS 465
                     +P  L  ++LS      ++        KL  L++S N +    P      
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDEL 295

Query: 466 SQLQALDLSLNHIVG 480
            Q+  L L  N  + 
Sbjct: 296 PQVGNLSLKGNPFLD 310

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.9 bits (203), Expect = 7e-17
 Identities = 58/342 (16%), Positives = 111/342 (32%), Gaps = 61/342 (17%)

Query: 202 SKSIFNLDLSSNQFSGP-IPLFFGNLSNLKSLYLYGNSLS----SPILSSLGKFKSLIDL 256
           S  I +LD+   + S          L   + + L    L+      I S+L    +L +L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 257 QLNENQFTGYIPRSFGNL-----TSLSTLRLSKNEL----FGSIPDEIGKMRSLSVLDLN 307
            L  N+                   +  L L    L     G +   +  + +L  L L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 308 ENQF-----KGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-----LRELLLSGNH 357
           +N       + +    +     L++L L Y  LS +    L +++      +EL +S N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN- 180

Query: 358 FAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT----GNISEA 413
                  +I + G   +    ++           +   L  + L    +T     ++   
Sbjct: 181 -------DINEAGVRVLCQGLKD-----------SPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 414 LAIYPNLTFIDLSRNNFYGE----ISSNWGKC-PKLDTLNVSMNNIT----GGIPREIGN 464
           +A   +L  + L  N         +         +L TL +    IT    G + R +  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 465 SSQLQALDLSLNHIVGEIPKELGKL-----NSLTKLILRGNQ 501
              L+ L L+ N +  E  + L +        L  L ++   
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 59/356 (16%), Positives = 115/356 (32%), Gaps = 55/356 (15%)

Query: 201 NSKSIFNLDLSSNQFS----GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKF-----K 251
            S  I  L L +   +    G +      L  L+ L+L  N L    L  L +       
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 252 SLIDLQLNENQFT----GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKM-----RSLS 302
            L  LQL     +      +            L +S N++  +    + +        L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 303 VLDLNENQFK----GVLPPSISNLTNLKELALLYNHLSGSIPPSLG------NLILRELL 352
            L L            L   +++  +L+ELAL  N L       L       +  LR L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 353 LSGNHF----AGYLPYNICQGGALEIFTVSENHFQGT----IPTSVRNC-TSLIRVHLNG 403
           +          G L   +    +L+  +++ N         +  ++      L  + +  
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 404 NNLTG----NISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKC-PKLDTLNVSMNNI 454
            + T     + S  LA    L  + +S N         +    G+    L  L ++  ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 455 T----GGIPREIGNSSQLQALDLSLNHI----VGEIPKELGKLNS-LTKLILRGNQ 501
           +      +   +  +  L+ LDLS N +    + ++ + + +    L +L+L    
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 61/349 (17%), Positives = 111/349 (31%), Gaps = 65/349 (18%)

Query: 199 IGNSKSIFNLDLSSNQF--SGPIPLFFG---NLSNLKSLYLYGNSLS----SPILSSLGK 249
           +  + ++  L+L SN+    G   +  G       ++ L L    L+      + S+L  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 250 FKSLIDLQLNENQFTGYIPRSFG-----NLTSLSTLRLSKNEL----FGSIPDEIGKMRS 300
             +L +L L++N       +            L  L+L    L       +   +     
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 301 LSVLDLNENQF--KGV--LPPSI-SNLTNLKELALLYNHLSGSIPPSLG-----NLILRE 350
              L ++ N     GV  L   +  +   L+ L L    ++      L         LRE
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT--- 407
           L L  N         +   G  E+            P  +   + L  + +    +T   
Sbjct: 232 LALGSNK--------LGDVGMAEL-----------CPGLLHPSSRLRTLWIWECGITAKG 272

Query: 408 -GNISEALAIYPNLTFIDLSRNNFYGE-----ISSNWGKCPKLDTLNVSMNNITGGIPRE 461
            G++   L    +L  + L+ N    E       +      +L++L V   + T      
Sbjct: 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332

Query: 462 IG----NSSQLQALDLSLNHI----VGEIPKELGKLNS-LTKLILRGNQ 501
                  +  L  L +S N +    V E+ + LG+  S L  L L    
Sbjct: 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 52/331 (15%), Positives = 94/331 (28%), Gaps = 62/331 (18%)

Query: 201 NSKSIFNLDLSSNQFS----GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKF-----K 251
               +  L L     S     P+        + K L +  N ++   +  L +       
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 252 SLIDLQLNENQFT----GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKM-----RSLS 302
            L  L+L     T      +     +  SL  L L  N+L      E+          L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 303 VLDLNENQF--KGV--LPPSISNLTNLKELALLYNHLSGSIPPSLGNLI------LRELL 352
            L + E     KG   L   +    +LKEL+L  N L       L   +      L  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 353 LSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG---- 408
           +           +          +V            +     L+ + ++ N L      
Sbjct: 320 VKSC--------SFTAACCSHFSSV------------LAQNRFLLELQISNNRLEDAGVR 359

Query: 409 NISEALAIY-PNLTFIDLSRNNF----YGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463
            + + L      L  + L+  +        +++       L  L++S N +      ++ 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 464 -----NSSQLQALDLSLNHIVGEIPKELGKL 489
                    L+ L L   +   E+   L  L
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 199 IGNSKSIFNLDLSSNQFSGP-----IPLFFGNLSNLKSLYLYGNSLSS----PILSSLGK 249
           +   +S+  L L+ N+                   L+SL++   S ++       S L +
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 250 FKSLIDLQLNENQFTGYIPRSFG-----NLTSLSTLRLSKNEL----FGSIPDEIGKMRS 300
            + L++LQ++ N+      R          + L  L L+  ++      S+   +    S
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 301 LSVLDLNENQF--KGV--LPPSI-SNLTNLKELALLYNHLS 336
           L  LDL+ N     G+  L  S+      L++L L   + S
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 20/210 (9%)

Query: 228 NLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
           N  S+      L++ P             L L  N+ +    ++F  LT L  L L+ N+
Sbjct: 17  NKNSVDCSSKKLTAIPS----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP--- 341
           L  ++P  I  ++++L  L + +N+ +  LP  +   L NL EL L  N L  S+PP   
Sbjct: 73  L-QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 342 -SLGNLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSV-RNCTSLIR 398
            SL  L    L L  N     LP  +     +L+   +  N  +  +P       T L  
Sbjct: 130 DSLTKL--TYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKT 185

Query: 399 VHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
           + L+ N L      A      L  + L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           IPS+I        LDL SN+ S      F  L+ L+ LYL  N L +  L + G FK L 
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPA-GIFKELK 85

Query: 255 DLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
           +L+   + +N+        F  L +L+ LRL +N+L  S+P  +   +  L+ L L  N+
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNE 144

Query: 311 FKGVLPPSI-SNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGN 356
            +  LP  +   LT+LKEL L  N L   +P      L    L+ L L  N
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTE--LKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 47/219 (21%), Positives = 74/219 (33%), Gaps = 63/219 (28%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGN 345
           +IP  I        LDL  N+   +   +   LT L+ L L  N L  ++P      L N
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGN 404
           L    L ++ N                             +P  V     +L  + L+ N
Sbjct: 87  L--ETLWVTDNKLQ-------------------------ALPIGVFDQLVNLAELRLDRN 119

Query: 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN 464
            L      +L   P   F  L+                KL  L++  N +   +P+ + +
Sbjct: 120 QLK-----SL---PPRVFDSLT----------------KLTYLSLGYNELQS-LPKGVFD 154

Query: 465 S-SQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQ 501
             + L+ L L  N +   +P+    KL  L  L L  NQ
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQ 192

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           IP+++   ++I  + L  N      P  F     L+ + L  N +S     +    +SL 
Sbjct: 26  IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
            L L  N+ T      F  L SL  L L+ N++   +  +    + +L++L L +N+ + 
Sbjct: 84  SLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 314 VLPPSISNLTNLKELALLYN 333
           +   + S L  ++ + L  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           ++L +N      P +F     L  + LS N++   +  +    +RSL+ L L  N+    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 315 LPPSI-SNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGN 356
           LP S+   L +L+ L L  N ++  +       L N  L  L L  N
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN--LNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 303 VLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGNHF 358
            + L +N  K + P + S    L+ + L  N +S  + P     L +  L  L+L GN  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS--LNSLVLYGNKI 92

Query: 359 AGYLPYNICQG-GALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGNNLTGNISEALAI 416
              LP ++ +G  +L++  ++ N     +     ++  +L  + L  N L        + 
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 417 YPNLTFIDLSRNNF 430
              +  + L++N F
Sbjct: 151 LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 29/154 (18%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLD 144
            I L    +   +   +FS + +L  +DL+ + +   + P+    L  L  L +  NK+ 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 145 GSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
             +P  +   L S+++  L +N +N  +               + +L             
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVD-----------AFQDL------------H 128

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGN 237
           ++  L L  N+        F  L  +++++L  N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 26/126 (20%)

Query: 386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN--------FYGEISSN 437
           +P ++        + L  N +      A + Y  L  IDLS N         F G     
Sbjct: 30  LPETIT------EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----- 78

Query: 438 WGKCPKLDTLNVSMNNITGGIPREI-GNSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKL 495
                 L++L +  N IT  +P+ +      LQ L L+ N I   +  +    L++L  L
Sbjct: 79  ---LRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLL 133

Query: 496 ILRGNQ 501
            L  N+
Sbjct: 134 SLYDNK 139

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P+ I  +     L L  NQ +   P  F +L NLK LYL  N L +  L   G F SL 
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPV-GVFDSLT 88

Query: 255 DLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
            L    L  NQ T      F  L  L  L +  N+L   +P  I ++  L+ L L++NQ 
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

Query: 312 KGVLPPSISNLTNLKELALLYN 333
           K +   +   L++L    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 44/271 (16%), Positives = 97/271 (35%), Gaps = 43/271 (15%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
             +L     +  +      L+++  +    + + S  +  +    ++  L LN N+ T  
Sbjct: 28  KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDI 83

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
            P    NL +L  L L +N++       +  ++ L  L L  N    +    + +L  L+
Sbjct: 84  KP--LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137

Query: 327 ELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT 385
            L L  N ++  I   L  L  L  L L  N                +I  +        
Sbjct: 138 SLYLGNNKIT-DITV-LSRLTKLDTLSLEDN----------------QISDIV------- 172

Query: 386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445
               +   T L  ++L+ N+++ ++   LA   NL  ++L       +  ++       +
Sbjct: 173 ---PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 446 TLNVSMNNITGGIPREIGNSSQLQALDLSLN 476
           T+  +  ++    P  I +    +  ++  +
Sbjct: 228 TVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 49/275 (17%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
                    +    + S   F   I   L +   T  +      L S+  +  + +++  
Sbjct: 5   SETITVPTPIKQ--IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-K 59

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-L 348
           S+   I  + +++ L LN N+   + P  ++NL NL  L L  N +   +   L +L  L
Sbjct: 60  SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
           + L L  N                            +    + +   L  ++L  N +T 
Sbjct: 115 KSLSLEHNGI--------------------------SDINGLVHLPQLESLYLGNNKIT- 147

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEIS--SNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466
           +I+  L+    L  + L  N     IS         KL  L +S N+I+    R +    
Sbjct: 148 DIT-VLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK 200

Query: 467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            L  L+L     + +       L     +      
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 45/258 (17%)

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSK 284
             +      L   S++     +  +  S+  +  N +            L +++ L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
           N+L   I   +  +++L  L L+EN+ K +   S+ +L  LK L+L +N +S  I   L 
Sbjct: 78  NKL-TDIKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS-DING-LV 131

Query: 345 NLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
           +L  L  L L  N                          + T  T +   T L  + L  
Sbjct: 132 HLPQLESLYLGNN--------------------------KITDITVLSRLTKLDTLSLED 165

Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEIS--SNWGKCPKLDTLNVSMNNITGGIPRE 461
           N ++ +I   LA    L  + LS+N+    IS          LD L +            
Sbjct: 166 NQIS-DIV-PLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINH 219

Query: 462 IGNSSQLQALDLSLNHIV 479
             N      +  +   +V
Sbjct: 220 QSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)

Query: 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
           FS  +F      +L    +  T       L+ +  +  + + +  S+   +  L ++   
Sbjct: 18  FSDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
           FL  N L   + P L NL ++  LF+ +N       S + + K + +L L  N  S    
Sbjct: 74  FLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING 129

Query: 221 LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL 280
           L   +L  L+SLYL  N ++   ++ L +   L  L L +NQ +  +P     LT L  L
Sbjct: 130 L--VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
            LSKN +  S    +  +++L VL+L   +         SNL     +      L
Sbjct: 184 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 41/172 (23%), Positives = 61/172 (35%), Gaps = 37/172 (21%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
           +P  +        LDLS N  S          L+NL SL L  N L+             
Sbjct: 33  VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------------ 78

Query: 254 IDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQF 311
                        I   +F  + +L  L LS N L  ++ + +   +++L VL L  N  
Sbjct: 79  -------------ISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHI 124

Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGNLI-LRELLLSGNHF 358
             V   +  ++  L++L L  N +S   P         L  L  L LS N  
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 256 LQLNENQFTGYIPR-SFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
           L L+ N  +      +   LT+L +L LS N L   I  E    + +L  LDL+ N    
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 314 VLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGA 371
           +     S+L  L+ L L  NH+   +   +  ++  L++L LS N               
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ-------------- 147

Query: 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
             I        +            L+ + L+ N L       L   P      L  +N
Sbjct: 148 --ISRFPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 33/194 (17%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLKELALLYNHLSGSIPP-SLGNL- 346
           ++P  +      ++LDL+ N    +    + + LTNL  L L +NHL+  I   +   + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 347 ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
            LR L LS NH                + T+ E  F            +L  + L  N++
Sbjct: 89  NLRYLDLSSNH----------------LHTLDEFLFSDL--------QALEVLLLYNNHI 124

Query: 407 TGNISEALAIYPNLTFIDLSRNN---FYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463
                 A      L  + LS+N    F  E+  +  K PKL  L++S N +      ++ 
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 464 NSSQLQALDLSLNH 477
                    L L++
Sbjct: 185 KLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 55/206 (26%)

Query: 86  NISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLD 144
            + L +  LS     ++ +    L  L L+ + L   I  E    + +L++L + +N L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 145 GSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKS 204
            ++   +                         +L  + +L +Y+N     +  +      
Sbjct: 102 -TLDEFL-----------------------FSDLQALEVLLLYNNHIV-VVDRNA----- 131

Query: 205 IFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS---PILSSLGKFKSLIDLQLNEN 261
                             F +++ L+ LYL  N +S     ++    K   L+ L L+ N
Sbjct: 132 ------------------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 262 QFTGYIPRSFGNLTSLS--TLRLSKN 285
           +           L +     L L  N
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 106 FPRLAYLDLTGSGLFGTIPPEVGL--LSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFL 162
               A LDL+ + L   +  E     L++L  L +  N L+  I  E    + ++    L
Sbjct: 38  PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 163 CSNYLNGSVPP-SLGNLSHISLLFIYDNLFSGFIPSDI-GNSKSIFNLDLSSNQFSGPIP 220
            SN+L+ ++      +L  + +L +Y+N     +  +   +   +  L LS NQ S    
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 221 LFFGN---LSNLKSLYLYGNSLSSPILSSLGKFKSL--IDLQLNENQFT 264
               +   L  L  L L  N L    L+ L K  +     L L+ N   
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 50/151 (33%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +PS I        LDL S   +      F  L+ L  L L  N L +  LS+ G F  L 
Sbjct: 29  VPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSA-GVFDDLT 83

Query: 255 DLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
           +L    L  NQ        F +LT L  L L  N+L  S+P  +  ++  L  L LN NQ
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ 142

Query: 311 FKGVLPPSI-SNLTNLKELALLYNHLSGSIP 340
            +  +P      LTNL+ L+L  N L  S+P
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
           + L L    L++   ++      L  L L+ NQ        F +LT L TL L+ N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP----SL 343
           S+P  +   +  L  L L  NQ K  LP  +   LT LKEL L  N L  SIP      L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 344 GNLILRELLLSGN 356
            N  L+ L LS N
Sbjct: 155 TN--LQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 47/195 (24%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L L           +F  LT L+ L L  N+L  ++   +   +  L  L L  NQ    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 315 LPPSI-SNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGNHFAGYLPYNICQG 369
           LP  +  +LT L +L L  N L  S+P      L  L  +EL L+ N             
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL--KELRLNTNQLQ---------- 144

Query: 370 GALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428
                          +IP       T+L  + L+ N L      A      L  I L  N
Sbjct: 145 ---------------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 429 NFYGEIS-----SNW 438
            F          S W
Sbjct: 190 QFDCSRCEILYLSQW 204

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 8e-14
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLS 283
                L L  N  +   L + G FK L  L+    + N+ T     +F   + ++ + L+
Sbjct: 32  QYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP- 341
            N L  ++  ++   + SL  L L  N+   V   S   L++++ L+L  N ++ ++ P 
Sbjct: 90  SNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 342 ---SLGNLILRELLLSGNHF 358
              +L +  L  L L  N F
Sbjct: 148 AFDTLHS--LSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 184 LFIYDNLFSGFIPSDI-GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP 242
           L + +N F+    + I      +  ++ S+N+ +      F   S +  + L  N L + 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 243 ILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKM 298
            +     FK L  L+   L  N+ T     SF  L+S+  L L  N++  ++       +
Sbjct: 96  -VQH-KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTL 152

Query: 299 RSLSVLDLNENQF 311
            SLS L+L  N F
Sbjct: 153 HSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 14/148 (9%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP----SLG 344
            IP+ I +    + L LN N+F  +    I   L  L+++    N ++  I         
Sbjct: 25  KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLN 402
            +   E+LL+ N     + + + +G  +L+   +  N     +        +S+  + L 
Sbjct: 82  GV--NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNF 430
            N +T     A     +L+ ++L  N F
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLANPF 165

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 8e-14
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 12/210 (5%)

Query: 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
           + +      + ++  I S L   ++ I+L+    +       +F     L  + +S+N++
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 288 FGSIPDEI-GKMRSLSVLDL-NENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS--L 343
              I  ++   +  L  + +   N    + P +  NL NL+ L +    +   +P    +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 344 GNLILRELLLSGNHFAGYLPYNICQG--GALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401
            +L    L +  N     +  N   G      I  +++N  Q  I  S  N T L  ++L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184

Query: 402 NGNNLTGNISE-ALAIYPNLTFIDLSRNNF 430
           + NN    +             +D+SR   
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 44/252 (17%), Positives = 76/252 (30%), Gaps = 35/252 (13%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFI-DTNKLD 144
           +    T L   +   +FS F  L  ++++ + +   I  +V   L  L  + I   N L 
Sbjct: 35  LRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 145 GSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKS 204
             I PE                          NL ++  L I +            +S  
Sbjct: 94  -YINPEA-----------------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 205 IFNLDLSSNQFSGPIP--LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
              LD+  N     I    F G       L+L  N +     S+    +       + N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISN 321
                   F   +    L +S+  +  S+P      ++ L        +      P++  
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLK----KLPTLEK 244

Query: 322 LTNLKELALLYN 333
           L  L E +L Y 
Sbjct: 245 LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 13/215 (6%)

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI-GNSKS 204
            IP ++    +          L      +      +  + I  N     I +D+  N   
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 205 IFNLDLS-SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
           +  + +  +N      P  F NL NL+ L +    +              + L + +N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 264 TGYIP-RSFGNLTS-LSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSIS 320
              I   SF  L+     L L+KN +   I +      +   +   + N  + +      
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 321 NLTNLKELALLYNHLSGSIPP----SLGNLILREL 351
             +    L +    +  S+P     +L  L  R  
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 32/231 (13%)

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
           S       ++++   IP ++   R+   L     + + +   + S   +L+++ +  N +
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 336 SGSIPPS-LGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393
              I      NL  L E+ +   +                +  ++   FQ          
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKAN---------------NLLYINPEAFQNL-------- 103

Query: 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW--GKCPKLDTLNVSM 451
            +L  + ++   +                +D+  N     I  N   G   +   L ++ 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 452 NNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQ 501
           N I   I     N +QL  L+LS N+ + E+P +     +    L +   +
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQF 263
            L L  N+    I      L+NL  L L GN L S  L + G F  L +L+   L ENQ 
Sbjct: 67  YLALGGNKLH-DISAL-KELTNLTYLILTGNQLQS--LPN-GVFDKLTNLKELVLVENQL 121

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SN 321
                  F  LT+L+ L L+ N+L  S+P  +  K+ +L+ LDL+ NQ +  LP  +   
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 322 LTNLKELALLYNHLSGSIP 340
           LT LK+L L  N L  S+P
Sbjct: 180 LTQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
            P D          +L     +  +      L+++  +    + + S  +  +    ++ 
Sbjct: 13  FPDDA--FAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVR 66

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
            L L  N+    I  +   LT+L+ L L+ N+L  S+P+ +  K+ +L  L L ENQ + 
Sbjct: 67  YLALGGNKLHD-IS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ- 122

Query: 314 VLPPSISN-LTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGN 356
            LP  + + LTNL  L L +N L  S+P      L N  L EL LS N
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTN--LTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 22/208 (10%)

Query: 111 YLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGS 170
             +L    +      +  L S +  +  + + +       +  L ++    L  N L+  
Sbjct: 23  KANLKKKSV-TDAVTQNELNS-IDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-- 76

Query: 171 VPPSLG---NLSHISLLFIYDNLFSGFIPSDIGNS-KSIFNLDLSSNQFSGPIPLFFGNL 226
               +     L++++ L +  N     +P+ + +   ++  L L  NQ        F  L
Sbjct: 77  ---DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLS 283
           +NL  L L  N L S  L   G F  L +L    L+ NQ        F  LT L  LRL 
Sbjct: 133 TNLTYLNLAHNQLQS--LPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNENQ 310
           +N+L  S+PD +  ++ SL  + L++N 
Sbjct: 190 QNQL-KSVPDGVFDRLTSLQYIWLHDNP 216

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P+ I    +   LDL +N         F  L++L  LYL GN L S  L + G F  L 
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPN-GVFNKLT 76

Query: 255 DLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
            L    L+ NQ        F  LT L  L L+ N+L  S+PD +  K+  L  L L +NQ
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQ 135

Query: 311 FKGVLPPSISNLTNLKELALLYN 333
            K V       LT+L+ + L  N
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
             L L  NSL S       +  SL  L L  N+        F  LTSL+ L LS N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-Q 89

Query: 290 SIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIP 340
           S+P+ +  K+  L  L LN NQ +  LP  +   LT LK+L L  N L  S+P
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVP 140

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 38/234 (16%), Positives = 70/234 (29%), Gaps = 11/234 (4%)

Query: 285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
            +       +      L   +L+  +   VL   + +   L+EL         +I   + 
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 345 NLILRELLLSG-NHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
            L           +F+     +  +           + F             +  +HL  
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMR---AAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463
            +LT  +   L     +T +DLS N     +         L+ L  S N +   +   + 
Sbjct: 451 KDLT-VL-CHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN-VD-GVA 505

Query: 464 NSSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSL 516
           N  +LQ L L  N +      + L     L  L L+GN          ++   L
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 42/254 (16%), Positives = 88/254 (34%), Gaps = 54/254 (21%)

Query: 196 PSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGN----------------SL 239
             D    + +F  +LS  + S  +     +   L+ L                       
Sbjct: 342 CRDSATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 240 SSPILSSLGKFKSLIDLQL-----NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE 294
               L      K++  ++        ++F             +  L L+  +L  ++   
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCH 458

Query: 295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLL 353
           + ++  ++ LDL+ N+ +  LPP+++ L  L+ L    N L  ++   + NL  L+ELLL
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 354 SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT---GNI 410
             N                 +   +           + +C  L+ ++L GN+L    G  
Sbjct: 516 CNNR----------------LQQSAA-------IQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

Query: 411 SEALAIYPNLTFID 424
                + P+++ I 
Sbjct: 553 ERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 13/179 (7%)

Query: 124 PPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183
              +  L + K      + L    P     L  +   FL  N             + + +
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN------SVLKMEYADVRV 445

Query: 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI 243
           L +     +  +   +     + +LDLS N+    +P     L  L+ L    N+L +  
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-- 500

Query: 244 LSSLGKFKSLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSL 301
           +  +     L +L L  N+       +   +   L  L L  N L         ++  +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 14/182 (7%)

Query: 175 LGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYL 234
              L++     +     +  +         + N +  ++       +     +NLK L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGM--QFFTNLKELHL 70

Query: 235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE 294
             N +S   LS L     L +L +N N+       +      LS L L  NEL     D 
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL--RDTDS 123

Query: 295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLS 354
           +  +++L +L +  N+ K +    +  L+ L+ L L  N ++ +         +  + L+
Sbjct: 124 LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLT 180

Query: 355 GN 356
           G 
Sbjct: 181 GQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 42/214 (19%)

Query: 244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303
           +       + +   L +   T  +      L+ +       + +       +    +L  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67

Query: 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP 363
           L L+ NQ   +    + +LT L+EL++  N L  ++   + +  L  L L  N       
Sbjct: 68  LHLSHNQISDL--SPLKDLTKLEELSVNRNRLK-NLNG-IPSACLSRLFLDNN------- 116

Query: 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI 423
                              +     S+ +  +L  + +  N L  +I   L     L  +
Sbjct: 117 -------------------ELRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVL 155

Query: 424 DLSRNNFYGEIS--SNWGKCPKLDTLNVSMNNIT 455
           DL  N     I+      +  K++ ++++     
Sbjct: 156 DLHGNE----ITNTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 13/176 (7%)

Query: 173 PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232
            S   LS +      ++       + +    ++  L LS NQ S   PL   +L+ L+ L
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSPL--KDLTKLEEL 90

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
            +  N L +  L+ +     L  L L+ N+       S  +L +L  L +  N+L     
Sbjct: 91  SVNRNRLKN--LNGI-PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKL--KSI 143

Query: 293 DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348
             +G +  L VLDL+ N+        ++ L  +  + L               L +
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 44/210 (20%)

Query: 295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLL 353
              + +    +L +     ++      L+ ++      +++  S+   +     L+EL L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70

Query: 354 SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEA 413
           S N                          Q +  + +++ T L  + +N N L  N++  
Sbjct: 71  SHN--------------------------QISDLSPLKDLTKLEELSVNRNRLK-NLNGI 103

Query: 414 LAIYPNLTFIDLSRNNFYGEIS--SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQAL 471
            +    L+ + L  N     +    +      L+ L++  N +   +   +G  S+L+ L
Sbjct: 104 PS--ACLSRLFLDNNE----LRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVL 155

Query: 472 DLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           DL  N I       L +L  +  + L G +
Sbjct: 156 DLHGNEI--TNTGGLTRLKKVNWIDLTGQK 183

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
             L L  N L    +SS G F  L  L    L  NQ TG  P +F   + +  L+L +N+
Sbjct: 32  TELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           +   I +++   +  L  L+L +NQ   V+P S  +L +L  L L  N
Sbjct: 90  I-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
           IP DI    +   L L+ N+         FG L +L  L L  N L+   +     F+  
Sbjct: 23  IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEP-NAFEGA 77

Query: 254 IDLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNEN 309
             +Q   L EN+      + F  L  L TL L  N++   +       + SL+ L+L  N
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

Query: 310 QF 311
            F
Sbjct: 137 PF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 275 TSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLY 332
              + L L+ NEL     D + G++  L  L+L  NQ  G + P+     ++++EL L  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGE 87

Query: 333 NHLSGSIPP----SLGNLILRELLLSGN 356
           N +   I       L    L+ L L  N
Sbjct: 88  NKIK-EISNKMFLGLHQ--LKTLNLYDN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
            ++  LYL GN  +  +   L  +K L  + L+ N+ +    +SF N+T L TL LS N 
Sbjct: 31  RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           L   IP      ++SL +L L+ N    V   + ++L+ L  LA+  N
Sbjct: 90  L-RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L L+ NQFT  +P+   N   L+ + LS N +  ++ ++    M  L  L L+ N+ +  
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 315 LPPSI-SNLTNLKELALLYNHLSGSIP 340
           +PP     L +L+ L+L  N +S  +P
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI 243
           L++  N F+  +P ++ N K +  +DLS+N+ S      F N++ L +L L  N L    
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 244 LSSLGKFKSLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKN 285
             +    KSL  L L+ N  +  +P  +F +L++LS L +  N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYN 333
             ++ L L  N+    +P E+   + L+++DL+ N+    L     SN+T L  L L YN
Sbjct: 31  RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88

Query: 334 HLSGSIPP----SLGNLILRELLLSGN 356
            L   IPP     L +  LR L L GN
Sbjct: 89  RLR-CIPPRTFDGLKS--LRLLSLHGN 112

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 19/233 (8%)

Query: 131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP-SLGNLSHISLLFIYDN 189
              +   +    +   IP       S +   L   +L  ++P  +  NL +IS +++  +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID 65

Query: 190 LFSGFIPSDI-GNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSLSS-PILSS 246
           +    + S    N   + ++++ + +    I       L  LK L ++   L   P L+ 
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 247 LGKFKSLIDLQLNENQFTGYIP-RSFGNLTSLS-TLRLSKNELFGSIPDEIGKMRSLSVL 304
           +        L++ +N +   IP  +F  L + + TL+L  N    S+         L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAV 184

Query: 305 DLNENQFKGVLPPSI-SNL-TNLKELALLYNHLSGSIPP----SLGNLILREL 351
            LN+N++  V+       + +    L +    ++ ++P      L  LI R  
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 47/282 (16%), Positives = 85/282 (30%), Gaps = 64/282 (22%)

Query: 227 SNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
              +   +    +   P L       S   L+L E         +F NL ++S + +S +
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPP-----STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGSIPPSL 343
                +       +  ++ +++   +    + P     L  LK L +    L    P   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 344 ---GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
                 I   L ++ N                 + ++  N FQG        C   + + 
Sbjct: 125 KVYSTDIFFILEITDN---------------PYMTSIPVNAFQGL-------CNETLTLK 162

Query: 401 LNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPR 460
           L  N  T                 +    F G          KLD + ++ N     I +
Sbjct: 163 LYNNGFT----------------SVQGYAFNG---------TKLDAVYLNKNKYLTVIDK 197

Query: 461 EI--GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
           +   G  S    LD+S   +   +P +   L  L +LI R  
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 15/204 (7%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFIDTNKLDG 145
           + L  T L  T+   +FS+ P ++ + ++       +       LS +  + I   +   
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 146 SIPPEV-GQLSSMEVFFLCSNYLNGSVPP--SLGNLSHISLLFIYDNLFSGFIPSDI--G 200
            I P+   +L  ++   + +  L    P    + +     +L I DN +   IP +   G
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153

Query: 201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGN----SLSSPILSSLGKFKSLIDL 256
                  L L +N F+  +  +  N + L ++YL  N     +       +        L
Sbjct: 154 LCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY--SGPSLL 210

Query: 257 QLNENQFTGYIPRSFGNLTSLSTL 280
            +++   T    +   +L  L   
Sbjct: 211 DVSQTSVTALPSKGLEHLKELIAR 234

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQF 263
            L+L SN+        F  L+ L  L L  N + S  L   G F  L  L    L+EN+ 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPD-GVFDKLTKLTILYLHENKL 88

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
                  F  LT L  L L  N+L  S+PD I  ++ SL  + L+ N 
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLS 283
           S+   L L  N L S  L   G F  L  L    L++NQ        F  LT L+ L L 
Sbjct: 28  SSATRLELESNKLQS--LPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
           +N+L  S+P+ +  K+  L  L L+ NQ K V       LT+L+++ L  N
Sbjct: 85  ENKL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L+L  N+        F  LT L+ L LS+N++  S+PD +  K+  L++L L+EN+ +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 315 LPPSI-SNLTNLKELALLYNHLSGSIP 340
           LP  +   LT LKELAL  N L  S+P
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLK-SVP 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 4e-10
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDE-IGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
                    +L+ L +   +    +    +  +  L  L + ++  + V P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 326 KELALLYNHLSGSIPPSLGNLILRELLLSGNHF 358
             L L +N L      ++  L L+EL+LSGN  
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 219 IPLFFGNLSNLKSLYLYGNSLSSPI-LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSL 277
                    NL  LY+        + L  L     L +L + ++      P +F     L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
           S L LS N L  S+  +  +  SL  L L+ N  
Sbjct: 83  SRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 26/126 (20%)

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
           C+          L    +++                         L + + Q    + L 
Sbjct: 15  CTRDGALDSLHHLPGAENLT------------------------ELYIENQQHLQHLELR 50

Query: 223 -FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
               L  L++L +  + L      +      L  L L+ N       ++   L SL  L 
Sbjct: 51  DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELV 109

Query: 282 LSKNEL 287
           LS N L
Sbjct: 110 LSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 27/117 (23%)

Query: 316 PPSISNLTNLKELALLYNHLSGSIPP-SLGNLI-LRELLLSGNHFAGYLPYNICQGGALE 373
              +    NL EL +        +    L  L  LR L +  +                 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG---------------- 67

Query: 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
           +  V+ + F  T          L R++L+ N L  ++S       +L  + LS N  
Sbjct: 68  LRFVAPDAFHFT--------PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 278 STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPP-SISNLTNLKELALLYNHLS 336
           S LR +++         +    +L+ L +   Q    L    +  L  L+ L ++ + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 337 GSIPPS--LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
             + P        L  L LS N     L +   QG +L+   +S N   
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISS--NWGKCPKLDTLNV 449
           N      + L G  +   I    A       ID S N    EI     +    +L TL V
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLV 71

Query: 450 SMNNITGGIPREIGNSSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGN 500
           + N I             L  L L+ N +  +G++   L  L SLT L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 27/134 (20%), Positives = 41/134 (30%), Gaps = 29/134 (21%)

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSK 284
           N    + L L G  +    + +LG                         L     +  S 
Sbjct: 17  NAVRDRELDLRGYKIPV--IENLGA-----------------------TLDQFDAIDFSD 51

Query: 285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS--GSIPPS 342
           NE+   +      +R L  L +N N+   +       L +L EL L  N L   G + P 
Sbjct: 52  NEI-RKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 109

Query: 343 LGNLILRELLLSGN 356
                L  L +  N
Sbjct: 110 ASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP-ILSSLGKFKSLIDLQLNENQFT-- 264
           L +++N+           L +L  L L  NSL     L  L   KSL  L +  N  T  
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 265 -GYIPRSFGNLTSLSTL 280
             Y       +  +  L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 55/323 (17%), Positives = 99/323 (30%), Gaps = 66/323 (20%)

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGK-----FKSLIDLQLNENQFT----GYIPRSF-GNL 274
               + SL L  N+L S     L +       S+  L L+ N         + +      
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 275 TSLSTLRLSKNELFGSIPDEIGKM-----RSLSVLDLNENQF--KGV--LPPSISNL-TN 324
            ++++L LS N L     DE+ K       +++VLDL  N F  K       + SNL  +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 325 LKELALLYNHLSGSIPPSLG------NLILRELLLSGNHFAGYLPYNICQGGALEIFTVS 378
           +  L L  N L       L          +  L L GN+        +      E+    
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN--------LASKNCAELAKFL 191

Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPN-LTFIDLSRNNFYGE 433
            +              S+  + L+ N L       ++   +  PN +  ++L  N  +G 
Sbjct: 192 AS-----------IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 434 ----ISSNWGKCPKLDTLNVSMNNITG-------GIPREIGNSSQLQALDLSLNHIVGEI 482
               +         L T+ +  + +          +     N  ++  +D +   I    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 483 PKELGKL-----NSLTKLILRGN 500
              +  L            L   
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 53/353 (15%), Positives = 104/353 (29%), Gaps = 71/353 (20%)

Query: 201 NSKSIFNLDLSSNQFS--GPIPLFFG---NLSNLKSLYLYGNSLSSPILSSLGKF----- 250
               + +LDLS N       + L        +++ SL L GNSL       L +      
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 251 KSLIDLQLNENQFTGYIPRSFGNL-----TSLSTLRLSKNELFGSIPDEIGKM-----RS 300
            ++  L L+ N  +                +++ L L  N+       E  +       S
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 301 LSVLDLNENQF--KGV--LPPSISNL-TNLKELALLYNHLSGSIPPSLG------NLILR 349
           ++ L+L  N    K    L   ++ +  N+  L L  N+L+      L          + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 350 ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG- 408
            L LS N         +      E+  +  +               ++ ++L  N L G 
Sbjct: 200 SLDLSANL--------LGLKSYAELAYIFSS-----------IPNHVVSLNLCLNCLHGP 240

Query: 409 ---NISEALAIYPNLTFIDLSRNNFYG-------EISSNWGKCPKLDTLNVSMNNITGGI 458
              N+        +L  + L  +            + + +    K+  ++ +   I    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 459 PREIGNSSQ-----LQALDLSLNHI-----VGEIPKELGKLNSLTKLILRGNQ 501
              I N  +          L    +          ++L   + L + I     
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 201 NSKSIFNLDLSSNQFS-GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
              ++  L L + + + G I        NL+ L L    L S  +S+L K   L  L+L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELS 79

Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNEN 309
           EN+  G +      L +L+ L LS N+L    ++ + + K+  L  LDL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 400 HLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISS--NWGKCPKLDTLNVSMNNITGG 457
               +N  G I    A + NL F+ L        + S  N  K PKL  L +S N I GG
Sbjct: 32  DNCKSND-GKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLELSENRIFGG 86

Query: 458 IPREIGNSSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGN 500
           +         L  L+LS N +  +  + + L KL  L  L L   
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
           G +        ++  L + +        S++     +  L+LS N+  G + +    L N
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 229 LKSLYLYGNSLSSP-ILSSLGKFKSLIDLQLNENQFT---GYIPRSFGNLTSLSTL 280
           L  L L GN L     L  L K + L  L L   + T    Y    F  L  L+ L
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT--GGIPREIGNSSQLQALDLSLNHIV 479
            +D  ++N  G+I     +   L+ L++    +     +P       +L+ L+LS N I 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIF 84

Query: 480 GEIPKELGKLNSLTKLILRGNQ 501
           G +     KL +LT L L GN+
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNK 106

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 250 FKSLIDLQLNENQFT-GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE 308
             ++ +L L+  +   G I        +L  L L    L  S+ + + K+  L  L+L+E
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSE 80

Query: 309 NQFKGVLPPSISNLTNLKELALLYNHLS--GSIPPSLGNLILRELLLSGN 356
           N+  G L      L NL  L L  N L    ++ P      L+ L L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT 455
            + +H     +   +   L+       + LS NN   +IS +      L  L++  N I 
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK 83

Query: 456 GGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
             I      +  L+ L +S N I       + KL +L  L +  N+
Sbjct: 84  K-IENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           L LS+N       L    + NL+ L L  N +   I +      +L +L ++ NQ     
Sbjct: 53  LALSTNNIEKISSL--SGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA--S 107

Query: 268 PRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPS------- 318
                 L +L  L +S N++  +G I D++  +  L  L L  N        +       
Sbjct: 108 LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166

Query: 319 ---ISNLTNLKEL 328
              +  L NLK+L
Sbjct: 167 IEVVKRLPNLKKL 179

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 391 RNCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISS--NWGKCPKLDTL 447
           R  + +  + L+ +    G +      +  L F+          ++S  N  K  KL  L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKL 69

Query: 448 NVSMNNITGGIPREIGNSSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGN 500
            +S N ++GG+         L  L+LS N I      + L KL +L  L L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 225 NLSNLKSLYLYGNSLSSP-ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283
             S++K L L  +  +   +     +F+ L  L       T  I  +   L  L  L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343
            N + G +     K  +L+ L+L+ N+        I +L+ ++ L  L N          
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK--------IKDLSTIEPLKKLEN---------- 114

Query: 344 GNLILRELLLSGN 356
               L+ L L   
Sbjct: 115 ----LKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 423 IDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT--GGIPREIGNSSQLQALDLSLNHIVG 480
           +D SR+N  G++     +  +L+ L+     +T    +P      ++L+ L+LS N + G
Sbjct: 24  LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSG 78

Query: 481 EIPKELGKLNSLTKLILRGNQ 501
            +     K  +LT L L GN+
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNK 99

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP-ILSSLGKFKSLID 255
           +++     +  L+LS N+ SG + +      NL  L L GN +     +  L K ++L  
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 256 LQLNEN---QFTGYIPRSFGNLTSLSTL 280
           L L          Y    F  L  L+ L
Sbjct: 118 LDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-P--ILSSLGKFKSLIDLQLNENQF 263
            L L++NQ +   P  F +L NL+ LY   N L++ P  +   L +   L  L LN+N  
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ---LTQLDLNDNHL 93

Query: 264 TGYIPR-SFGNLTSLSTLRLSKN 285
              IPR +F NL SL+ + L  N
Sbjct: 94  KS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLS 283
           ++ + L+L  N ++   L   G F  L++LQ    N N+ T      F  LT L+ L L+
Sbjct: 33  TDKQRLWLNNNQITK--LEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNEN 309
            N L  SIP      ++SL+ + L  N
Sbjct: 90  DNHL-KSIPRGAFDNLKSLTHIYLYNN 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 83/574 (14%), Positives = 163/574 (28%), Gaps = 171/574 (29%)

Query: 20  FVSSFLITVSSEPNEEADTLLKWKASLQSRNQ-------SRLPSWTKATTNVSSKISPCA 72
           F+ S + T   +P+      ++ +  L + NQ       SRL  + K    +  ++ P  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151

Query: 73  W---YGI-----SCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIP 124
                G+     +      V      +  +        F  F    +L+           
Sbjct: 152 NVLIDGVLGSGKTW-----VALDVCLSYKV---QCKMDFKIF----WLN------LKNCN 193

Query: 125 PEVGLLSHLKFLF--IDTN---KLDGSIPPEVGQLSSMEV---FFLCSNYLNGSVPPSLG 176
               +L  L+ L   ID N   + D S   ++   S             Y N        
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-------- 245

Query: 177 NLSHISLLFIYDN-----LFSGFIPSDIG-------NSKSIFNLDLSSNQFSGPIPLFFG 224
                 LL +  N      ++ F   ++          K + +   ++      +     
Sbjct: 246 -----CLL-VLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 225 NLSNLKSLYLYGNSLS-------------SP-ILSSLGK----FKSLID--LQLNENQFT 264
            L+  +   L    L              +P  LS + +      +  D    +N ++ T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKM-RSLSVLDLNENQFKGVLPPSISNLT 323
             I  S   L                 P E  KM   LSV   + +     +P  +    
Sbjct: 357 TIIESSLNVLE----------------PAEYRKMFDRLSVFPPSAH-----IPTIL---- 391

Query: 324 NLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN--- 380
               L+L++  +  S    + N + +  L+        +         LE+    EN   
Sbjct: 392 ----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYA 444

Query: 381 -H--------------FQGTIPTSVRN-CTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
            H                  IP  +     S I  HL        ++    ++ +  F++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 425 LS-RNNFYGEISSNWGKC-PKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEI 482
              R++     S+ W      L+T                     LQ L     +I    
Sbjct: 505 QKIRHD-----STAWNASGSILNT---------------------LQQLKFYKPYICDND 538

Query: 483 PKELGKLNSLTKLILRGNQRAVTLSFINKVCSSL 516
           PK    +N++   + +  +  +   + + +  +L
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 57/348 (16%), Positives = 104/348 (29%), Gaps = 103/348 (29%)

Query: 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS 246
            D++        +  +  +F   L S Q    +  F   +  +   +L     +     S
Sbjct: 51  IDHIIM--SKDAVSGTLRLFWT-LLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 247 LG--KFKSLIDLQLNENQ-FTGY-IPRS--FGNL-TSLSTLRLSKNEL----FGSIPDEI 295
           +    +    D   N+NQ F  Y + R   +  L  +L  LR +KN L     GS     
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----- 161

Query: 296 GKMRSLSVL---DLNENQFKGVLPPSIS--NLTN-------LKELALLYNHL-------- 335
           GK    + +        + +  +   I   NL N       L+ L  L   +        
Sbjct: 162 GK----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 336 --SGSIPPSLGNLI--LRELLLSGNHFAGYLPY-NICQGGALEIFTVSENHFQGTIPTSV 390
             S +I   + ++   LR LL S  +    L   N+    A   F +             
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL------------- 264

Query: 391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVS 450
            +C  L+         T        +    T                          ++S
Sbjct: 265 -SCKILL--------TTRFKQVTDFLSAATTT-------------------------HIS 290

Query: 451 MNNITGGI-PREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLT-KLI 496
           +++ +  + P E      L      L+    ++P+E+   N     +I
Sbjct: 291 LDHHSMTLTPDE---VKSLLLK--YLDCRPQDLPREVLTTNPRRLSII 333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQ---LNENQ 262
            L L  NQ +   P  F  L+ L  L L  N L+  P     G F  L  L    LN+NQ
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----GVFDKLTQLTQLSLNDNQ 89

Query: 263 FTGYIPR-SFGNLTSLSTLRLSKN 285
               IPR +F NL SL+ + L  N
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
           L L +NQ T   P  F  LT L+ L L  N+L   +P  +  K+  L+ L LN+NQ K +
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 315 LPPSISNLTNLKELALLYN 333
              +  NL +L  + LL N
Sbjct: 94  PRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLS 283
           +  + LYLY N ++   L   G F  L  L    L+ NQ T      F  LT L+ L L+
Sbjct: 30  TTTQVLYLYDNQITK--LEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 284 KNELFGSIPDEI-GKMRSLSVLDLNEN 309
            N+L  SIP      ++SL+ + L  N
Sbjct: 87  DNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 52/326 (15%), Positives = 99/326 (30%), Gaps = 36/326 (11%)

Query: 202 SKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
                 + + +     P  +       ++S+ L G    +        +   +   +   
Sbjct: 42  RWCRRKVFIGNCYAVSPATVIR-RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA- 99

Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGK-MRSLSVLDLNE-NQFKGV-LPPS 318
                +  S+  L  +    L +  +     + I K  ++  VL L+    F    L   
Sbjct: 100 -----MSSSYTWLEEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151

Query: 319 ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVS 378
            +   NLKEL L  + +       L +       L   + +     +     ALE     
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL--ASEVSFSALERL--- 206

Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS------RNNFYG 432
                      V  C +L  + LN       ++  L   P L  +         R + Y 
Sbjct: 207 -----------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 433 EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE-IPKELGKLNS 491
            +S     C +L  L+   + +   +P      S+L  L+LS   +    + K L +   
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 492 LTKLILRGNQRAVTLSFINKVCSSLE 517
           L +L +        L  +   C  L 
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLR 341

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 52/393 (13%), Positives = 108/393 (27%), Gaps = 53/393 (13%)

Query: 104 SSFPRLAYLDLTGSGL-------FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
           ++   L  LDL  S +           P     L  L    + +     ++   V +  +
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHI------SLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210
           ++   L        +   L     +                   +   +   K +  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP-ILSSLGKFKSLIDLQLNENQFTGYIPR 269
             +     +P  +   S L +L L   ++ S  ++  L +   L  L +  +        
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDAGLE 331

Query: 270 SFG-NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328
                   L  LR+  +E F   P+     + L  +                    L+ +
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--------------SMGCPKLESV 377

Query: 329 ALLYNHLSG----SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
                 ++     +I  +  N+    L +       YL       G   I          
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI---------- 427

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY-PNLTFIDLSRNNFYGE-ISSNWGKCP 442
                V +C  L R+ L+G  LT  + E +  Y   +  + ++        +      C 
Sbjct: 428 -----VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481

Query: 443 KLDTLNVS-MNNITGGIPREIGNSSQLQALDLS 474
            L  L +         +         +++L +S
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 394 TSLIRVHLNGNNLTGNISEALAI--YPNLTFIDLS--RNNFYGEISSNW-------GKCP 442
            +L  + +    L  ++ E +     PNL  + L     ++  +   N         + P
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 443 KLDTLNVSMNNITGGIPREIGNS---SQLQALDLSLNHI----VGEIPKELGKLNSLTKL 495
            L  L +        +      S    QL+ +D+S   +       +   + K+  L  +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 496 ILRGNQ 501
            ++ N 
Sbjct: 313 NMKYNY 318

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 20/169 (11%)

Query: 315 LPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGA--- 371
           L P +  +  L  L +     +           L+ L +        +  +I        
Sbjct: 164 LSPVLDAMPLLNNLKIKGT--NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 372 --LEIFTVSENHFQGTIPTSV------RNCTSLIRVHLNGNNLTGNISEALA---IYPNL 420
             L ++   E++                   +L  + +        + E      I P L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 421 TFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIGNS 465
             +D+S      E    +  +  K   L  +N+  N ++  + +E+  S
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 21/173 (12%)

Query: 110 AYLDLTGSGLFGTIPPEVGLLSH--LKFLFIDTNKLDGSIPPEVG-----QLSSMEVFFL 162
           A   L    + GT    +G      LK L I +  L  S+  ++       L  + ++  
Sbjct: 170 AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG 229

Query: 163 CSNYLNGSVPPSL------GNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL---DLSSN 213
             +Y                   ++  L I D      +      S  +  L   D+S+ 
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 214 QFS--GPIPLF--FGNLSNLKSLYLYGNSLSSPILSSLGK-FKSLIDLQLNEN 261
             +  G   L      + +LK + +  N LS  +   L K     ID+  ++ 
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 24/202 (11%)

Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNS------KSIFNLDLSSNQFSGPIPLFFGNLSNLK 230
             +H   LF  D  F     S I          ++  L+    + +  + +      NLK
Sbjct: 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK 196

Query: 231 SLYLYGNSLSSPILSSLG--KFKSLIDLQL---NENQFTGYIPRSF------GNLTSLST 279
           SL +    L   ++  +      +L  L L    E+         F          +L  
Sbjct: 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256

Query: 280 LRLSKNELFGSIPDEIGK---MRSLSVLDLNENQF--KGV--LPPSISNLTNLKELALLY 332
           L +   E    + +   +   +  L  +D++      +G   L   +  + +LK + + Y
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 333 NHLSGSIPPSLGNLILRELLLS 354
           N+LS  +   L   +  ++ +S
Sbjct: 317 NYLSDEMKKELQKSLPMKIDVS 338

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 48/250 (19%), Positives = 87/250 (34%), Gaps = 37/250 (14%)

Query: 280 LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339
            R  ++ +   + +     R   +   N       L   +S  + L+ L+L    LS  I
Sbjct: 75  FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134

Query: 340 PPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR 398
             +L     L  L LSG            +     +               + +C+ L  
Sbjct: 135 VNTLAKNSNLVRLNLSGCS-------GFSEFALQTL---------------LSSCSRLDE 172

Query: 399 VHLNG-NNLTGN-ISEALAIY-PNLTFIDLSRNNFY------GEISSNWGKCPKLDTLNV 449
           ++L+   + T   +  A+A     +T ++LS             +      CP L  L++
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLDL 229

Query: 450 SM-NNITGGIPREIGNSSQLQALDLS-LNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507
           S    +     +E    + LQ L LS    I+ E   ELG++ +L  L + G     TL 
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 289

Query: 508 FINKVCSSLE 517
            + +    L+
Sbjct: 290 LLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 319 ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVS 378
            S+ +  + L L   +L   +   L +  +       +     L  +        +   +
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR-----NNFYGE 433
                 T+   +  C+ L  + L G  L+  I   LA   NL  ++LS            
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162

Query: 434 ISSNWGKCPKLDTLNVS-MNNIT-GGIPREIG-NSSQLQALDLS 474
           + S+   C +LD LN+S   + T   +   +   S  +  L+LS
Sbjct: 163 LLSS---CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 71/455 (15%), Positives = 138/455 (30%), Gaps = 47/455 (10%)

Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPP-EVGQLSSMEVFF 161
              FP L  L L G                    ++    +  ++   +      M V  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE--ISNNLRQLKSVHFRRMIVSD 126

Query: 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS----G 217
           L  + L  +    L  L     L       +  + S + + + I  L +  + FS     
Sbjct: 127 LDLDRLAKARADDLETLK----LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182

Query: 218 PIPLFFGNLSNLKSLYLYGNS---LSSPILSSLGKF-KSLIDLQLNENQFTGY--IPRSF 271
            +     + ++L+ L  Y      +S   L ++ +  +SL+ +++ + +        ++ 
Sbjct: 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242

Query: 272 GNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331
            NL       L+++         +   R L  L L+       +P        +++L LL
Sbjct: 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLL 301

Query: 332 Y-NHLSGSIPPSLGNLI-LRELLLSGN-------HFAGYLPY----NICQGGALEIFTVS 378
           Y    +      +     L  L              A Y        I +G   +     
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query: 379 ENHF-QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIY-PNLTFIDLSRNNFYGEISS 436
           E    Q  +    + C  L  + +  +++T    E++  Y  NL    L   +    I+ 
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421

Query: 437 NWG---------KCPKLDTLNVSMN--NITGGIPREIG-NSSQLQALDLSLNHIVGEIPK 484
                        C KL      +    +T      IG  S  ++ + L       E   
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481

Query: 485 ELGK-LNSLTKLILRGNQ-RAVTLSFINKVCSSLE 517
           E  +   +L KL +RG       ++       SL 
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 52/403 (12%), Positives = 114/403 (28%), Gaps = 47/403 (11%)

Query: 104 SSFPRLAYLDLTGSGL-------FGTIPPEVGLLSHLKFLFIDTNKL-DGSIPPEVGQLS 155
           +   ++  L +  S            +      L  L F   +  K+    +        
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 156 SMEVFFL--CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
           S+    +             +  NL       + +++       ++   + +  L LS  
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTGYIPRSFG 272
             +  +P+ F   + ++ L L    L +    +L  K  +L  L+         +     
Sbjct: 281 GPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKM------------RSLSVLDLNENQFKGV-LPPSI 319
               L  LR+ +      + DE G +            + L  + +  +      L    
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSE 379
           + L NL +  L+       I     +  +R LL+             C+   L  F    
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG------------CK--KLRRFAFYL 445

Query: 380 NHFQGT---IPTSVRNCTSLIRVHLNGNNLTGNISEALAIY-PNLTFIDLSRNNFYGE-I 434
                T   +    +   ++  + L     +       +   PNL  +++    F    I
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 435 SSNWGKCPKLDTLNVSMNNITGGIPREIG---NSSQLQALDLS 474
           ++   K P L  L V     +      +        ++ +   
Sbjct: 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/317 (11%), Positives = 80/317 (25%), Gaps = 80/317 (25%)

Query: 226 LSNLKSLYLYGNSLSSPILSSLGKF-----KSLIDLQLNENQFTGYIPRSFGN-LTSLST 279
           LS+L+ L L G  ++    + +         +L ++ L   Q      R+          
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 280 LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339
           L L  N L           + L            +L   + +   +  L L  N L+ + 
Sbjct: 131 LGLQLNSL-----GPEA-CKDLR----------DLL---LHDQCQITTLRLSNNPLTAAG 171

Query: 340 PPSLG-----NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCT 394
              L      N  +  L L            +   G   +               +    
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHT--------GLGDEGLELLAAQ------------LDRNR 211

Query: 395 SLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNF-------YGEISSNWGKCPK 443
            L  +++  N         ++ A   +P+L  + L  N           ++        +
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 444 LDTLNVSMNNITGG---------------IPREIGNSSQLQALDLSLNHIVGEIPKELGK 488
           +         ++                     +    +L   DL  +      P    +
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 489 L----NSLTKLILRGNQ 501
           L      +  L+ +   
Sbjct: 332 LLRVEGEVRALLEQLGS 348

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 41/265 (15%), Positives = 77/265 (29%), Gaps = 49/265 (18%)

Query: 201 NSKSIFNLDLSSNQFS--GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKF-----KSL 253
              ++  ++L+S Q    G   L        + L L  NSL       L          +
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 254 IDLQLNENQFTG----YIPRSFGNLTSLSTLRLSKNELFGSIPDE----IGKM----RSL 301
             L+L+ N  T      +       TS++ L L        + DE    +       R L
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT----GLGDEGLELLAAQLDRNRQL 213

Query: 302 SVLDLNENQFKGV----LPPSISNLTNLKELALLYNH--------LSGSIPPSLGNLILR 349
             L++  N         L  +     +L+ L L +N         L      + G   + 
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 350 ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN 409
             L  G          + +  ++ +  V  N          R+   L+R  L  +     
Sbjct: 274 VSLTEGT--------AVSEYWSVILSEVQRNLNSWDRARVQRHLELLLR-DLEDSRGATL 324

Query: 410 ----ISEALAIYPNLTFIDLSRNNF 430
                ++ L +   +  +     + 
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLGSS 349

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 19/130 (14%)

Query: 391 RNCTSLIRVHLNGNNLTGN-----ISEALAIYPNLTFIDLSRNNFYGEISSNWGKC---- 441
            N   L  V+LN             +EAL     +    +        ++    +     
Sbjct: 33  NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 92

Query: 442 PKLDTLNVSMNNITGGIPREIGNS----SQLQALDLSLNH--IVGEIPKELGKL----NS 491
             L +LNV  N I+G     +  +    + L  L +      +   +  E+  +     +
Sbjct: 93  NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152

Query: 492 LTKLILRGNQ 501
           L K      Q
Sbjct: 153 LLKFGYHFTQ 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.18

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-64  Score=548.50  Aligned_cols=475  Identities=32%  Similarity=0.460  Sum_probs=290.3

Q ss_pred             HhhcCCCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccc---cCC-
Q 037558           25 LITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGT---LHG-  100 (518)
Q Consensus        25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~---~~~-  100 (518)
                      +++++++.++|++||++||+++.+ +. .+.+|..+       .|||.|.||+|+ .++|++++|+++++.|.   +++ 
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~~~-------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~   72 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLPD-KN-LLPDWSSN-------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS   72 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCSC-TT-SSTTCCTT-------SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred             cCccccCCHHHHHHHHHHHhhCCC-cc-cccCCCCC-------CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence            445556678899999999999984 55 88999855       689999999998 78999999999998886   332 


Q ss_pred             ---------------------ccCCCCCCCcEEeCCCCCCcccCCc--cccCCCCCCEEECCCCCCCcCCCccC-CCCCC
Q 037558          101 ---------------------FSFSSFPRLAYLDLTGSGLFGTIPP--EVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSS  156 (518)
Q Consensus       101 ---------------------~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~  156 (518)
                                           ..+..+++|++|+|++|.+.+.+|.  .++.+++|++|++++|.+.+.+|..+ .++++
T Consensus        73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence                                 2678889999999999999888887  88999999999999998887777765 77888


Q ss_pred             CcEEEccCCCCCccCCcC---CcCCCCC----------------------CEEEccCccccccCCccccCCCCCcEEEcc
Q 037558          157 MEVFFLCSNYLNGSVPPS---LGNLSHI----------------------SLLFIYDNLFSGFIPSDIGNSKSIFNLDLS  211 (518)
Q Consensus       157 L~~L~L~~n~~~~~~p~~---l~~l~~L----------------------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  211 (518)
                      |++|++++|.+.+..|..   +.++++|                      ++|++++|.+.+.+|. ++++++|++|+++
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls  231 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS  231 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred             CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence            888888888777655544   4444444                      4444444444444443 5555555555555


Q ss_pred             cCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCC-CCCcEEEccCCcCccc
Q 037558          212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNL-TSLSTLRLSKNELFGS  290 (518)
Q Consensus       212 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~  290 (518)
                      +|.+++.+|..+..+++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.
T Consensus       232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            55555555555555555555555555554433332  34444444444444444555555443 6666666666666666


Q ss_pred             CccccCCCCCccEEEccCCcccccCCcc-CcCCCCCCeeecccccccccCCccccc-c-cCcEEEccCccCcc-------
Q 037558          291 IPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNLTNLKELALLYNHLSGSIPPSLGN-L-ILRELLLSGNHFAG-------  360 (518)
Q Consensus       291 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~-~-~L~~L~l~~n~~~~-------  360 (518)
                      +|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+.. . .|++|++++|.+.+       
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            6666666666666666666666555544 556666666666666666555554433 2 45555555554444       


Q ss_pred             -------------------cCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558          361 -------------------YLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT  421 (518)
Q Consensus       361 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  421 (518)
                                         .+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus       390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence                               4444444444444555555544444444444455555555555555544455555555555


Q ss_pred             EEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCc
Q 037558          422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ  501 (518)
Q Consensus       422 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  501 (518)
                      +|++++|++.+.+|..+..+++|++|++++|++.+.+|.++..+++|++|++++|++.+.+|..++.+++|++|++++|+
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            55555555554455555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccCccCcc
Q 037558          502 RAVTLSFINKV  512 (518)
Q Consensus       502 ~~~~ip~~l~~  512 (518)
                      +.|.+|..+.+
T Consensus       550 l~g~ip~~~~~  560 (768)
T 3rgz_A          550 FNGTIPAAMFK  560 (768)
T ss_dssp             EESBCCGGGGT
T ss_pred             cCCcCChHHhc
Confidence            55555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-56  Score=484.55  Aligned_cols=432  Identities=30%  Similarity=0.450  Sum_probs=255.0

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+.++.  +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..  .+++|++|+
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             CcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            3556666666666655543  666666666666666666666666666666666666666666555543  566666666


Q ss_pred             ccCCCCCccCCcCCcCC-CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh-ccCCCCCcEEEcccCcC
Q 037558          162 LCSNYLNGSVPPSLGNL-SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~  239 (518)
                      +++|.+.+.+|..+.+. ++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            66666666666666554 67777777777777666777777777777777777776556654 66677777777777766


Q ss_pred             CccccccccCCC-CCCEeeCcCCCCccCCcccccC--CCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC
Q 037558          240 SSPILSSLGKFK-SLIDLQLNENQFTGYIPRSFGN--LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP  316 (518)
Q Consensus       240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  316 (518)
                      ++.+|..+..++ +|++|++++|.+.+.+|..+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            665666555554 5555555555555444444433  4455555555555555555555555556666666555555555


Q ss_pred             ccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCC
Q 037558          317 PSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS  395 (518)
Q Consensus       317 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  395 (518)
                      ..+..+++|+.|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            55555555555555555555555554443 55555555555555555555555555555555555555555555555555


Q ss_pred             CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccc-------------------------------------
Q 037558          396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-------------------------------------  438 (518)
Q Consensus       396 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-------------------------------------  438 (518)
                      |++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+                                     
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            5555555555555555555555555555555555544433221                                     


Q ss_pred             ---------------------------------cCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc
Q 037558          439 ---------------------------------GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE  485 (518)
Q Consensus       439 ---------------------------------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  485 (518)
                                                       ..+++|+.|++++|+++|.+|..++.++.|+.|+|++|+++|.+|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                             12344555555555555555555555555555555555555555555


Q ss_pred             ccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558          486 LGKLNSLTKLILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       486 l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      ++++++|++||+++|++.|.||..+.++++|+
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            55555555555555555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.5e-56  Score=469.75  Aligned_cols=454  Identities=22%  Similarity=0.303  Sum_probs=386.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCC-------CCCCcCCCCCCCCCCCCCcc---CceeeCCCCCEEEEEcCCCCCccccCCc
Q 037558           32 PNEEADTLLKWKASLQSRNQSR-------LPSWTKATTNVSSKISPCAW---YGISCNDAGRVINISLRNTGLSGTLHGF  101 (518)
Q Consensus        32 ~~~~~~~l~~~~~~~~~~~~~~-------~~~W~~~~~~~~~~~~~c~w---~g~~c~~~~~v~~l~l~~~~~~~~~~~~  101 (518)
                      ...|++||.++++++..++|..       ..+|+.+       .++|.|   .||+|+..++|++|+|+++++.|.+|+ 
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-   99 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-   99 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-
Confidence            3468899999999987654432       2367654       789999   999998889999999999999999998 


Q ss_pred             cCCCCCCCcEEeCCCCCC------cc---------------------------cCCcccc-------------------C
Q 037558          102 SFSSFPRLAYLDLTGSGL------FG---------------------------TIPPEVG-------------------L  129 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~------~~---------------------------~~~~~~~-------------------~  129 (518)
                      .++++++|++|+|++|.+      .+                           ..+..+.                   .
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            999999999999999965      11                           0111111                   1


Q ss_pred             CCCCCEEECC--CCCCCcCCCccCCCCCCCcEEEccCCCCCcc-----------------CCcCCc--CCCCCCEEEccC
Q 037558          130 LSHLKFLFID--TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGS-----------------VPPSLG--NLSHISLLFIYD  188 (518)
Q Consensus       130 l~~L~~L~l~--~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~  188 (518)
                      ...++.+.+.  +|.+++ +|..++++++|++|++++|.+.+.                 +|..++  ++++|++|++++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~  258 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN  258 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence            1223333333  578887 899999999999999999999985                 999999  999999999999


Q ss_pred             ccccccCCccccCCCCCcEEEcccCc-CCC-CcchhccCC------CCCcEEEcccCcCCccccc--cccCCCCCCEeeC
Q 037558          189 NLFSGFIPSDIGNSKSIFNLDLSSNQ-FSG-PIPLFFGNL------SNLKSLYLYGNSLSSPILS--SLGKFKSLIDLQL  258 (518)
Q Consensus       189 n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l  258 (518)
                      |.+.+.+|..++++++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|++|++
T Consensus       259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L  337 (636)
T 4eco_A          259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC  337 (636)
T ss_dssp             CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred             CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence            99999999999999999999999998 888 788888776      99999999999999 6887  8999999999999


Q ss_pred             cCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCC-ccEEEccCCcccccCCccCcCCC--CCCeeecccccc
Q 037558          259 NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS-LSVLDLNENQFKGVLPPSISNLT--NLKELALLYNHL  335 (518)
Q Consensus       259 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l  335 (518)
                      ++|.+.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.+. .+|..+..++  +|+.|++++|.+
T Consensus       338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence            9999998888 8899999999999999998 88888999999 999999999999 7888776654  899999999999


Q ss_pred             cccCCcccc-------c-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhc-C-------CCCcEE
Q 037558          336 SGSIPPSLG-------N-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN-C-------TSLIRV  399 (518)
Q Consensus       336 ~~~~p~~~~-------~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l-------~~L~~L  399 (518)
                      ++.+|..+.       . .+|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..... .       ++|++|
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L  493 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI  493 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence            988887665       3 68999999999999655555667899999999999998 55554332 2       299999


Q ss_pred             EcccCccccccChhhh--CCCCCCEEecccCccccccCccccCCCCCCEEEc------cCCccccCccccccCCCCCCEE
Q 037558          400 HLNGNNLTGNISEALA--IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV------SMNNITGGIPREIGNSSQLQAL  471 (518)
Q Consensus       400 ~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l------s~n~l~~~~~~~~~~l~~L~~L  471 (518)
                      ++++|+++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|
T Consensus       494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence            99999999 6777776  89999999999999997 8888999999999999      5677888999999999999999


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558          472 DLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       472 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  504 (518)
                      ++++|++ +.+|..+.  ++|+.|++++|++..
T Consensus       572 ~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          572 QIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             ECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9999999 68888766  899999999998753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-54  Score=465.26  Aligned_cols=455  Identities=19%  Similarity=0.267  Sum_probs=384.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCC--Ccc------------CceeeCCCCCEEEEEcCCCCCcc
Q 037558           31 EPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISP--CAW------------YGISCNDAGRVINISLRNTGLSG   96 (518)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--c~w------------~g~~c~~~~~v~~l~l~~~~~~~   96 (518)
                      +..+|++||++||+++.+ +     +|+..+.  |...+|  |.|            .||.|+..++|++|+|+++++.|
T Consensus       266 ~~~~d~~ALl~~k~~l~~-~-----~W~~~~~--~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDG-K-----NWRYYSG--TINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTG-G-----GCCCCCS--SCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEE
T ss_pred             cchHHHHHHHHHHHHcCC-C-----CCCcCCC--cccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCC
Confidence            445789999999999965 2     7865410  111245  999            99999888999999999999999


Q ss_pred             ccCCccCCCCCCCcEEeC-CCCCCcccCCcc-------------------------------------------------
Q 037558           97 TLHGFSFSSFPRLAYLDL-TGSGLFGTIPPE-------------------------------------------------  126 (518)
Q Consensus        97 ~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~-------------------------------------------------  126 (518)
                      .+|+ .++++++|++|+| ++|.+.|..+..                                                 
T Consensus       338 ~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          338 RVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             cCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            9998 9999999999999 888766552211                                                 


Q ss_pred             --ccCCCCCCEEECCC--CCCCcCCCccCCCCCCCcEEEccCCCCCc-----------------cCCcCCc--CCCCCCE
Q 037558          127 --VGLLSHLKFLFIDT--NKLDGSIPPEVGQLSSMEVFFLCSNYLNG-----------------SVPPSLG--NLSHISL  183 (518)
Q Consensus       127 --~~~l~~L~~L~l~~--n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~  183 (518)
                        ......++.+.+..  |.+++ +|..++++++|++|+|++|.+.+                 .+|..++  ++++|++
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence              01222344444444  77886 89999999999999999999998                 3899988  9999999


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCc-CCC-CcchhccCCC-------CCcEEEcccCcCCccccc--cccCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSG-PIPLFFGNLS-------NLKSLYLYGNSLSSPILS--SLGKFKS  252 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~--~l~~l~~  252 (518)
                      |++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|.  .++++++
T Consensus       496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            9999999999999999999999999999998 887 7887666554       9999999999999 6888  8999999


Q ss_pred             CCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCC-ccEEEccCCcccccCCccCcCCCC--CCeee
Q 037558          253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS-LSVLDLNENQFKGVLPPSISNLTN--LKELA  329 (518)
Q Consensus       253 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~  329 (518)
                      |+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++.  |+.|+
T Consensus       575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred             CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence            999999999999 778 7999999999999999998 88988999999 999999999998 78887776654  99999


Q ss_pred             cccccccccCCccc------ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC--------CC
Q 037558          330 LLYNHLSGSIPPSL------GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC--------TS  395 (518)
Q Consensus       330 l~~n~l~~~~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------~~  395 (518)
                      +++|.+.+.+|...      ...+|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+...        ++
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~  729 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL  729 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence            99999998776543      2257999999999999544444558899999999999998 666655432        38


Q ss_pred             CcEEEcccCccccccChhhh--CCCCCCEEecccCccccccCccccCCCCCCEEEccC------CccccCccccccCCCC
Q 037558          396 LIRVHLNGNNLTGNISEALA--IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM------NNITGGIPREIGNSSQ  467 (518)
Q Consensus       396 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~------n~l~~~~~~~~~~l~~  467 (518)
                      |+.|+|++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+..+++|+.|++++      |.+.+.+|..+..+++
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~  807 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS  807 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence            999999999999 6777776  89999999999999997 788889999999999976      7788899999999999


Q ss_pred             CCEEeCcCCcCcccCCccccCCCCCCEEECcCCcccccc
Q 037558          468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTL  506 (518)
Q Consensus       468 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~i  506 (518)
                      |+.|+|++|++ +.+|..+.  ++|+.|+|++|++...-
T Consensus       808 L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          808 LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            99999999999 68888765  69999999999986433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-50  Score=429.47  Aligned_cols=431  Identities=19%  Similarity=0.192  Sum_probs=273.7

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      ..++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            4789999999999977666 899999999999999999988899999999999999999999988899999999999999


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc--EEEcccCcC
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK--SLYLYGNSL  239 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~~  239 (518)
                      +++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999976678899999999999999999875545566699999999999999987788888888888  788888877


Q ss_pred             CccccccccCC---------------------------------------------------CCCCEeeCcCCCCccCCc
Q 037558          240 SSPILSSLGKF---------------------------------------------------KSLIDLQLNENQFTGYIP  268 (518)
Q Consensus       240 ~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~  268 (518)
                      .+..+..+...                                                   .+++.|++++|.+.+..+
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            66544332210                                                   034445555555554444


Q ss_pred             ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcc-ccc-c
Q 037558          269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGN-L  346 (518)
Q Consensus       269 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~  346 (518)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.. +
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            44555555555555555554 44555555555555555555555444444555555555555555544443332 222 4


Q ss_pred             cCcEEEccCccCcccC--chhhcCCCCccEEecCCCcCccccChhhh-------------------------cCCCCcEE
Q 037558          347 ILRELLLSGNHFAGYL--PYNICQGGALEIFTVSENHFQGTIPTSVR-------------------------NCTSLIRV  399 (518)
Q Consensus       347 ~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~L  399 (518)
                      +|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..|..+.                         .+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            4555555555444433  33444444444444444444444444444                         44555555


Q ss_pred             EcccCccccccChhhhCCCCCCEEecccCccccc---cCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558          400 HLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE---ISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN  476 (518)
Q Consensus       400 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  476 (518)
                      ++++|.+++..+..+..+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            5555555444444445555555555555554431   1233444555555555555555444444555555555555555


Q ss_pred             cCcccCCccccCCCCCCEEECcCCccccccCccCccCCC
Q 037558          477 HIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSS  515 (518)
Q Consensus       477 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~  515 (518)
                      ++.+..|..+.+++.| +|++++|++.+.+|..+..+++
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence            5555555555555555 5555555555444444443333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-49  Score=421.02  Aligned_cols=424  Identities=20%  Similarity=0.191  Sum_probs=354.7

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..++++++|++|
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             CccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence            35788999999998876666 88999999999999999988888889999999999999999986667778999999999


Q ss_pred             EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc--EEEcccCcCCCCc-------------------
Q 037558          161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF--NLDLSSNQFSGPI-------------------  219 (518)
Q Consensus       161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~~~~~~-------------------  219 (518)
                      ++++|.+.+..++.+..+++|++|++++|.+.+..+..++.+++|+  +|++++|.+.+..                   
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~  214 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN  214 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence            9999998864444555588999999999888877777777777777  6666666554333                   


Q ss_pred             --------------------------------------------------------chhccCCCCCcEEEcccCcCCccc
Q 037558          220 --------------------------------------------------------PLFFGNLSNLKSLYLYGNSLSSPI  243 (518)
Q Consensus       220 --------------------------------------------------------~~~l~~l~~L~~L~l~~n~~~~~~  243 (518)
                                                                              +..++.+++|++|++++|.++. +
T Consensus       215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l  293 (606)
T 3t6q_A          215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-L  293 (606)
T ss_dssp             HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-C
T ss_pred             HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-C
Confidence                                                                    3335566777777777777763 6


Q ss_pred             cccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCcc-ccCCCCCccEEEccCCcccccC--CccCc
Q 037558          244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD-EIGKMRSLSVLDLNENQFKGVL--PPSIS  320 (518)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~--~~~l~  320 (518)
                      |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+.
T Consensus       294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  373 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR  373 (606)
T ss_dssp             CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred             ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence            66777777888888888877776677777788888888888877655554 3777888888888888887654  66788


Q ss_pred             CCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCch-hhcCCCCccEEecCCCcCccccChhhhcCCCCcE
Q 037558          321 NLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPY-NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR  398 (518)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  398 (518)
                      .+++|++|++++|.+.+..|..+.. ++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  453 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH  453 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence            8889999999999888777777665 8899999999998877654 4888999999999999999888999999999999


Q ss_pred             EEcccCccccc---cChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcC
Q 037558          399 VHLNGNNLTGN---ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL  475 (518)
Q Consensus       399 L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  475 (518)
                      |++++|++++.   .+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+.+++.| .|++++
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            99999999873   23678999999999999999998889999999999999999999999999999999999 999999


Q ss_pred             CcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          476 NHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       476 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      |++++..|..+..+++|++|++++|++.+..+
T Consensus       533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999989889999999999999999988765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-48  Score=414.03  Aligned_cols=426  Identities=20%  Similarity=0.154  Sum_probs=328.7

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            5789999999999877665 899999999999999999988888999999999999999999988899999999999999


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc----EEEccc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK----SLYLYG  236 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~  236 (518)
                      +++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+.+|+    +|++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999997777889999999999999999986 5699999999999999999999877666665544433    566666


Q ss_pred             CcCCcccccccc--------------------------------------------------------------------
Q 037558          237 NSLSSPILSSLG--------------------------------------------------------------------  248 (518)
Q Consensus       237 n~~~~~~~~~l~--------------------------------------------------------------------  248 (518)
                      |.+++..+..+.                                                                    
T Consensus       191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            665543333332                                                                    


Q ss_pred             ------------CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC
Q 037558          249 ------------KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP  316 (518)
Q Consensus       249 ------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  316 (518)
                                  .+++|+.|+++++.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.. 
T Consensus       271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~-  344 (606)
T 3vq2_A          271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF-  344 (606)
T ss_dssp             CTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-
T ss_pred             cccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-
Confidence                        2334444444444443 223 455555666666666666 35552 3 5666666666666444332 


Q ss_pred             ccCcCCCCCCeeeccccccccc--CCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhc
Q 037558          317 PSISNLTNLKELALLYNHLSGS--IPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRN  392 (518)
Q Consensus       317 ~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~  392 (518)
                       .+..+++|++|++++|.+++.  .|..+.. +.|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..
T Consensus       345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred             -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence             455677777777777777654  2444433 678888888877665 44667777888888888888877666 57778


Q ss_pred             CCCCcEEEcccCccccccChhhhCCCCCCEEecccCcccc-ccCccccCCCCCCEEEccCCccccCccccccCCCCCCEE
Q 037558          393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG-EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQAL  471 (518)
Q Consensus       393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  471 (518)
                      +++|++|++++|++++..+..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence            8888888888888888888888888888888888888887 367778888888888888888887777888888888888


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCC-CCC
Q 037558          472 DLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCS-SLE  517 (518)
Q Consensus       472 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~-~L~  517 (518)
                      ++++|++.+..|..+..+++|++|++++|++. .+|..+..++ +|+
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA  548 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence            88888888888888888888888888888886 6777776665 354

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-47  Score=411.02  Aligned_cols=436  Identities=20%  Similarity=0.152  Sum_probs=273.2

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..+..|+++++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            35789999999988875554 78899999999999999988888888999999999999999885444568999999999


Q ss_pred             EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhcc--CCCCCcEEEcccCc
Q 037558          161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFG--NLSNLKSLYLYGNS  238 (518)
Q Consensus       161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~  238 (518)
                      ++++|.+.+..|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999998876667889999999999999999888888888899999999998888876665543  45677777777777


Q ss_pred             CCcccccccc---------------------------------------------------CCC--CCCEeeCcCCCCcc
Q 037558          239 LSSPILSSLG---------------------------------------------------KFK--SLIDLQLNENQFTG  265 (518)
Q Consensus       239 ~~~~~~~~l~---------------------------------------------------~l~--~L~~L~l~~n~~~~  265 (518)
                      +++..+..+.                                                   .++  +|++|++++|.+.+
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            6655444333                                                   222  25556666665555


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc-----cCCc----cCcCCCCCCeeeccccccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG-----VLPP----SISNLTNLKELALLYNHLS  336 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-----~~~~----~l~~l~~L~~L~l~~n~l~  336 (518)
                      ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+     .+|.    .+..+++|++|++++|.++
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            555555566666666666665554444433333333333332221110     0110    2233334444444444443


Q ss_pred             ccCCccccc-----------------------------ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558          337 GSIPPSLGN-----------------------------LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP  387 (518)
Q Consensus       337 ~~~p~~~~~-----------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  387 (518)
                      +..+..+..                             ..++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            332222211                             245555555555555556666666677777777776665444


Q ss_pred             -hhhhcCCCCcEEEcccCcccccc--------------------------ChhhhCCCCCCEEecccCccccccCccccC
Q 037558          388 -TSVRNCTSLIRVHLNGNNLTGNI--------------------------SEALAIYPNLTFIDLSRNNFYGEISSNWGK  440 (518)
Q Consensus       388 -~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  440 (518)
                       ..+..+++|++|++++|++.+..                          |..+..+++|+.|++++|++++..+..+.+
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence             45556666666666666555433                          344445555555555555555444445555


Q ss_pred             CCCCCEEEccCCccccCcc--------ccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCcc
Q 037558          441 CPKLDTLNVSMNNITGGIP--------REIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKV  512 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~  512 (518)
                      +++|++|++++|++.+..+        ..+..+++|++|++++|++....+..+.++++|++|++++|++.+..|..+.+
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            5556666666665553211        12455566666666666666333344666667777777777665433334455


Q ss_pred             CCCCC
Q 037558          513 CSSLE  517 (518)
Q Consensus       513 l~~L~  517 (518)
                      +++|+
T Consensus       583 l~~L~  587 (680)
T 1ziw_A          583 QVSLK  587 (680)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            55554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=402.69  Aligned_cols=421  Identities=21%  Similarity=0.188  Sum_probs=282.4

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            35789999999999876665 89999999999999999988888889999999999999999997777899999999999


Q ss_pred             EccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC----cEEEcc
Q 037558          161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL----KSLYLY  235 (518)
Q Consensus       161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~  235 (518)
                      ++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    +.++++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            999999986555579999999999999999987 468899999999999999999987777777777777    788888


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCC------------------------------------------------------
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNEN------------------------------------------------------  261 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------------------------------------  261 (518)
                      +|.+.+..+..+... +|+.|++++|                                                      
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            888877665555443 4555555544                                                      


Q ss_pred             ----CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCcc-------------------
Q 037558          262 ----QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-------------------  318 (518)
Q Consensus       262 ----~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------  318 (518)
                          .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|..                   
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence                122233444555666667777666665 455555555 6666666666665 33331                   


Q ss_pred             -CcCCCCCCeeecccccccccC--Cccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhcC
Q 037558          319 -ISNLTNLKELALLYNHLSGSI--PPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRNC  393 (518)
Q Consensus       319 -l~~l~~L~~L~l~~n~l~~~~--p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l  393 (518)
                       ...+++|++|++++|.+++..  |..+.. ++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+
T Consensus       342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence             033444444444444444321  222211 4455555555554443332 4555555555555555554433 344555


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEe
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALD  472 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  472 (518)
                      ++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            56666666666655555555555666666666666654 34555555566666666666666555555555666666666


Q ss_pred             CcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          473 LSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       473 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      +++|++.+..+..+..+++|++|++++|++.+.+|
T Consensus       501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            66666665555555566666666666666655554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-46  Score=404.53  Aligned_cols=434  Identities=18%  Similarity=0.169  Sum_probs=299.9

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+..+. .+.++++|++|++++|.+.+..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            4677777777777665554 667777777777777777654444677777777777777777755556677777777777


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCcccc--CCCCCcEEEcccCcCC-----------------------
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIG--NSKSIFNLDLSSNQFS-----------------------  216 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~-----------------------  216 (518)
                      +++|.+.+..|..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.++                       
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence            777777766666677777777777777766655444332  3345555555555444                       


Q ss_pred             ----------------------------CCcchhccCCC--CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC
Q 037558          217 ----------------------------GPIPLFFGNLS--NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY  266 (518)
Q Consensus       217 ----------------------------~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  266 (518)
                                                  +..+..+..++  +|++|++++|.+++..+..++.+++|++|++++|.+.+.
T Consensus       208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred             ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence                                        33344444443  399999999999988888999999999999999998876


Q ss_pred             CcccccCCCCCcEEEc---------------------------------cCCcCcccCccccCCCCCccEEEccCCc---
Q 037558          267 IPRSFGNLTSLSTLRL---------------------------------SKNELFGSIPDEIGKMRSLSVLDLNENQ---  310 (518)
Q Consensus       267 ~~~~l~~l~~L~~L~l---------------------------------~~n~l~~~~p~~~~~l~~L~~L~l~~n~---  310 (518)
                      .|..+..+++|++|++                                 ++|.+.+..+..+..+++|++|++++|.   
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  367 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL  367 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred             ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence            6665555555555555                                 4444444444444444444444443332   


Q ss_pred             -------------------------ccccCCccCcCCCCCCeeecccccccccCCc-cccc-ccCcEEEccCccCcccCc
Q 037558          311 -------------------------FKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGN-LILRELLLSGNHFAGYLP  363 (518)
Q Consensus       311 -------------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~-~~L~~L~l~~n~~~~~~~  363 (518)
                                               +.+..|..+..+++|+.|++++|.+.+.+|. .+.. +.|++|++++|.+.+..+
T Consensus       368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred             hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence                                     2222333344444444444444444443332 2222 445555555555544444


Q ss_pred             hhhcCCCCccEEecCCCcCc--cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccC------
Q 037558          364 YNICQGGALEIFTVSENHFQ--GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS------  435 (518)
Q Consensus       364 ~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------  435 (518)
                      ..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+      
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  527 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG  527 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred             hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence            55555556666666666554  4577888899999999999999998888889999999999999999986422      


Q ss_pred             --ccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCc-c
Q 037558          436 --SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK-V  512 (518)
Q Consensus       436 --~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~-~  512 (518)
                        ..+.++++|++|++++|++....+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+. .
T Consensus       528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  607 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA  607 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred             cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence              2378899999999999999954445689999999999999999977777789999999999999999887766554 4


Q ss_pred             CCCC
Q 037558          513 CSSL  516 (518)
Q Consensus       513 l~~L  516 (518)
                      +++|
T Consensus       608 ~~~L  611 (680)
T 1ziw_A          608 FRNL  611 (680)
T ss_dssp             HTTC
T ss_pred             cccc
Confidence            4444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-47  Score=403.89  Aligned_cols=417  Identities=21%  Similarity=0.194  Sum_probs=358.5

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..+..++++++|++|
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            35899999999999876666 79999999999999999988889999999999999999999987777889999999999


Q ss_pred             EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc----EEEcccCcCCCCcchh-------------
Q 037558          161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF----NLDLSSNQFSGPIPLF-------------  222 (518)
Q Consensus       161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~-------------  222 (518)
                      ++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+    +|++++|.+++..+..             
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~  213 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG  213 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence            999999986 6799999999999999999999887776665444332    4555555444222221             


Q ss_pred             -------------------------------------------------------------------ccCCCCCcEEEcc
Q 037558          223 -------------------------------------------------------------------FGNLSNLKSLYLY  235 (518)
Q Consensus       223 -------------------------------------------------------------------l~~l~~L~~L~l~  235 (518)
                                                                                         +..+++|+.|+++
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~  293 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA  293 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred             CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence                                                                               3344566666666


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc-
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV-  314 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-  314 (518)
                      +|.+.. ++ .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+..  .+..+++|++|++++|.+.+. 
T Consensus       294 ~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          294 GVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             SCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred             Cccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence            666654 34 788899999999999999 57774 5 8999999999999665444  567899999999999999866 


Q ss_pred             -CCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhh
Q 037558          315 -LPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVR  391 (518)
Q Consensus       315 -~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~  391 (518)
                       .+..+..+++|++|++++|.+.+ +|..+.. ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.
T Consensus       367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence             47788999999999999999885 4554544 899999999999998887 6888999999999999999998999999


Q ss_pred             cCCCCcEEEcccCcccc-ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558          392 NCTSLIRVHLNGNNLTG-NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA  470 (518)
Q Consensus       392 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  470 (518)
                      .+++|++|++++|++++ .++..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            99999999999999998 47889999999999999999999988999999999999999999999888999999999999


Q ss_pred             EeCcCCcCcccCCccccCCC-CCCEEECcCCccccccC
Q 037558          471 LDLSLNHIVGEIPKELGKLN-SLTKLILRGNQRAVTLS  507 (518)
Q Consensus       471 L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~ip  507 (518)
                      |++++|++. .+|..+..++ +|++|++++|++.+..+
T Consensus       526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999998 6777799987 69999999999998666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=420.40  Aligned_cols=441  Identities=21%  Similarity=0.175  Sum_probs=305.3

Q ss_pred             CccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccC-CccccCCCCCCEEECCCCCCCcCCCc
Q 037558           71 CAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTI-PPEVGLLSHLKFLFIDTNKLDGSIPP  149 (518)
Q Consensus        71 c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~  149 (518)
                      |+|..|.+ ...+++.++|+++.+.+..+. .|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            46777776 567899999999999877666 8999999999999999766666 77899999999999999999988899


Q ss_pred             cCCCCCCCcEEEccCCCCCccCCcC--CcCCCCCCEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhccCC
Q 037558          150 EVGQLSSMEVFFLCSNYLNGSVPPS--LGNLSHISLLFIYDNLFSGFIP-SDIGNSKSIFNLDLSSNQFSGPIPLFFGNL  226 (518)
Q Consensus       150 ~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  226 (518)
                      .|+++++|++|++++|.+.+.+|..  +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            9999999999999999998766665  8999999999999999987655 578999999999999999988777777665


Q ss_pred             --CCCcEEEcccCcCCccccccccCCCC------CCEeeCcCCCCccCCcccccC-------------------------
Q 037558          227 --SNLKSLYLYGNSLSSPILSSLGKFKS------LIDLQLNENQFTGYIPRSFGN-------------------------  273 (518)
Q Consensus       227 --~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~-------------------------  273 (518)
                        ++|+.|++++|.+.+..+..++.+.+      |+.|++++|.+.+..+..+..                         
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              66777777777766655555544443      666666666544333322211                         


Q ss_pred             -------------CCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCC
Q 037558          274 -------------LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP  340 (518)
Q Consensus       274 -------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  340 (518)
                                   .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                         1456666666666655555555666666666666666665555556666666666666666655444


Q ss_pred             ccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc------------------cC--------------
Q 037558          341 PSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT------------------IP--------------  387 (518)
Q Consensus       341 ~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------~~--------------  387 (518)
                      ..+.. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.                  +|              
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N  411 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN  411 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence            44443 5566666666666555555555555666666555554421                  11              


Q ss_pred             --------hhhhcCCCCcEEEcccCccccccCh-hhhCCCCCCEEecccCccc-----cccCccccCCCCCCEEEccCCc
Q 037558          388 --------TSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRNNFY-----GEISSNWGKCPKLDTLNVSMNN  453 (518)
Q Consensus       388 --------~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~ls~n~  453 (518)
                              ..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+.     +..+..+.++++|++|++++|+
T Consensus       412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  491 (844)
T 3j0a_A          412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY  491 (844)
T ss_dssp             CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred             ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence                    1123455666666666666543222 2334556666666666654     2233456667777777777777


Q ss_pred             cccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCC
Q 037558          454 ITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSS  515 (518)
Q Consensus       454 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~  515 (518)
                      +++..|..|..+++|+.|+|++|++++..+..+.  ++|+.|++++|++.+.+|..+.+++.
T Consensus       492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~  551 (844)
T 3j0a_A          492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV  551 (844)
T ss_dssp             HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred             ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence            7776777777778888888888877765555544  67788888888887777776655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.5e-47  Score=403.28  Aligned_cols=397  Identities=21%  Similarity=0.282  Sum_probs=346.4

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCC------c---------------------------CCCccCC-
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLD------G---------------------------SIPPEVG-  152 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~------~---------------------------~~p~~l~-  152 (518)
                      .+++.|+|+++.+.|.+|++++.+++|++|+|++|.+.      +                           .+|..++ 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            58999999999999999999999999999999999751      1                           1111111 


Q ss_pred             ------------------CCCCCcEEEcc--CCCCCccCCcCCcCCCCCCEEEccCcccccc-----------------C
Q 037558          153 ------------------QLSSMEVFFLC--SNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-----------------I  195 (518)
Q Consensus       153 ------------------~l~~L~~L~L~--~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-----------------~  195 (518)
                                        ....++.+.+.  .|.+++ +|..++++++|++|++++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              11122222232  567887 899999999999999999999986                 8


Q ss_pred             Ccccc--CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCc-CCc-cccccccCC------CCCCEeeCcCCCCcc
Q 037558          196 PSDIG--NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSS-PILSSLGKF------KSLIDLQLNENQFTG  265 (518)
Q Consensus       196 ~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~  265 (518)
                      |..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+      ++|++|++++|+++ 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            99999  99999999999999999999999999999999999998 998 888888776      99999999999999 


Q ss_pred             CCcc--cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCC-CCeeecccccccccCCcc
Q 037558          266 YIPR--SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN-LKELALLYNHLSGSIPPS  342 (518)
Q Consensus       266 ~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~p~~  342 (518)
                      .+|.  .+..+++|++|++++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence            7888  89999999999999999998999 8899999999999999999 88888999999 999999999999 78877


Q ss_pred             ccc---ccCcEEEccCccCcccCchhhc-------CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccCh
Q 037558          343 LGN---LILRELLLSGNHFAGYLPYNIC-------QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISE  412 (518)
Q Consensus       343 ~~~---~~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  412 (518)
                      +..   .+|+.|++++|.+.+..|..+.       .+.+|+.|++++|.+.+..+..+..+++|++|++++|+++...+.
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            665   3799999999999999988888       778999999999999944444456699999999999999944444


Q ss_pred             hhhCC-------CCCCEEecccCccccccCcccc--CCCCCCEEEccCCccccCccccccCCCCCCEEeC------cCCc
Q 037558          413 ALAIY-------PNLTFIDLSRNNFYGEISSNWG--KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL------SLNH  477 (518)
Q Consensus       413 ~l~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~  477 (518)
                      .+...       ++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|++      ++|+
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred             HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence            44433       39999999999999 6787776  89999999999999996 8999999999999999      5688


Q ss_pred             CcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558          478 IVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK  511 (518)
Q Consensus       478 l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~  511 (518)
                      +.+.+|..+..+++|++|++++|++ +.||..+.
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence            8999999999999999999999999 89998765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=390.45  Aligned_cols=395  Identities=21%  Similarity=0.220  Sum_probs=324.8

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..++++++|++|
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred             CCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence            35789999999998876555 79999999999999999988888899999999999999999986555579999999999


Q ss_pred             EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC----cEEEcccCcCCCCcchhc------------
Q 037558          161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI----FNLDLSSNQFSGPIPLFF------------  223 (518)
Q Consensus       161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~l------------  223 (518)
                      ++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++|    +++++++|.+.+..+..+            
T Consensus       130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  209 (570)
T 2z63_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN  209 (570)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred             ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence            999999986 478999999999999999999988877777777777    778888877665444333            


Q ss_pred             ---------------------------------------------------------------------cCCCCCcEEEc
Q 037558          224 ---------------------------------------------------------------------GNLSNLKSLYL  234 (518)
Q Consensus       224 ---------------------------------------------------------------------~~l~~L~~L~l  234 (518)
                                                                                           ..+++|++|++
T Consensus       210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l  289 (570)
T 2z63_A          210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL  289 (570)
T ss_dssp             CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred             ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence                                                                                 33445555555


Q ss_pred             ccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc
Q 037558          235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV  314 (518)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  314 (518)
                      ++|.+.+ +|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+.+.
T Consensus       290 ~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          290 VSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK  362 (570)
T ss_dssp             ESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE
T ss_pred             cCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc
Confidence            5555543 44445555 5556666555555 3333  3556666777776666544443  6689999999999999865


Q ss_pred             C--CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhh
Q 037558          315 L--PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVR  391 (518)
Q Consensus       315 ~--~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~  391 (518)
                      .  +..+..+++|++|++++|.+.+..+.....++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.
T Consensus       363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence            4  667889999999999999998655552233899999999999988766 5688899999999999999988999999


Q ss_pred             cCCCCcEEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558          392 NCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA  470 (518)
Q Consensus       392 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  470 (518)
                      .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999998 578899999999999999999999888999999999999999999999888888999999999


Q ss_pred             EeCcCCcCcccCC
Q 037558          471 LDLSLNHIVGEIP  483 (518)
Q Consensus       471 L~L~~n~l~~~~~  483 (518)
                      |++++|++.+..|
T Consensus       523 L~l~~N~~~~~~~  535 (570)
T 2z63_A          523 IWLHTNPWDCSCP  535 (570)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEecCCcccCCCc
Confidence            9999999997765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.5e-46  Score=391.76  Aligned_cols=425  Identities=19%  Similarity=0.200  Sum_probs=308.7

Q ss_pred             CCccCceeeCC------------CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEE
Q 037558           70 PCAWYGISCND------------AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLF  137 (518)
Q Consensus        70 ~c~w~g~~c~~------------~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  137 (518)
                      .|.|.|+ |+.            ..+++.++++++.+.+..+. .+.++++|++|++++|.+.+..++.|+.+++|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            3777776 642            24789999999999877666 899999999999999999988888999999999999


Q ss_pred             CCCCCCCcCCCccCCCCCCCcEEEccCCCCCc-cCCcCCcCCCCCCEEEccCccccccC-CccccCCCCCcEEEcccCcC
Q 037558          138 IDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFI-PSDIGNSKSIFNLDLSSNQF  215 (518)
Q Consensus       138 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~  215 (518)
                      +++|.+++..|..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999997767779999999999999999986 45778999999999999999854444 46899999999999999999


Q ss_pred             CCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC--cc-cccCCCCCcEEEccCCcCcccCc
Q 037558          216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI--PR-SFGNLTSLSTLRLSKNELFGSIP  292 (518)
Q Consensus       216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~-~l~~l~~L~~L~l~~n~l~~~~p  292 (518)
                      ++..|..++.+++|++|++++|.+.......+..+++|++|++++|++.+..  +. ....+++|+.|++++|.+++..+
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            9888999999999999999888876533333456788888888888877631  11 11234445555555544432111


Q ss_pred             c----ccCC-----------------------------------------------------------CCCccEEEccCC
Q 037558          293 D----EIGK-----------------------------------------------------------MRSLSVLDLNEN  309 (518)
Q Consensus       293 ~----~~~~-----------------------------------------------------------l~~L~~L~l~~n  309 (518)
                      .    .+..                                                           .++|+.|++++|
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n  320 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS  320 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred             HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence            1    1111                                                           234555555555


Q ss_pred             cccccCCccC-cCCCCCCeeecccccccccCCc---cccc-ccCcEEEccCccCcccCc--hhhcCCCCccEEecCCCcC
Q 037558          310 QFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP---SLGN-LILRELLLSGNHFAGYLP--YNICQGGALEIFTVSENHF  382 (518)
Q Consensus       310 ~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~---~~~~-~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l  382 (518)
                      .+. .+|..+ ..+++|++|++++|.+++.+|.   .+.. +.|++|++++|.+.+..+  ..+..+++|+.|++++|++
T Consensus       321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            554 445443 3567777777777777655432   1222 667777777777665432  3466667777777777777


Q ss_pred             ccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558          383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI  462 (518)
Q Consensus       383 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  462 (518)
                      + .+|..+..+++|++|++++|++++. +..+  .++|++|++++|++++..    ..+++|++|++++|+++ .+|. .
T Consensus       400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          400 H-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             C-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             c-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence            6 5666666677777777777776632 2222  256777777777776532    46778888888888887 5665 4


Q ss_pred             cCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          463 GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       463 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      ..+++|++|++++|++.+..|..+..+++|++|++++|++.+.+|
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            567888888888888888777778888888888888888887776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6e-45  Score=398.77  Aligned_cols=421  Identities=20%  Similarity=0.202  Sum_probs=304.2

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCcc--CCCCCCCc
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPE--VGQLSSME  158 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~  158 (518)
                      ..+++.++++++...+.+++..|.++++|++|+|++|.+.+..|+.|+.+++|++|++++|.+++.+|..  ++++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            3578999999998877886558999999999999999999888999999999999999999998766665  89999999


Q ss_pred             EEEccCCCCCccCC-cCCcCCCCCCEEEccCccccccCCccccCC--CCCcEEEcccCcCCCCcchhccCC---------
Q 037558          159 VFFLCSNYLNGSVP-PSLGNLSHISLLFIYDNLFSGFIPSDIGNS--KSIFNLDLSSNQFSGPIPLFFGNL---------  226 (518)
Q Consensus       159 ~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~l---------  226 (518)
                      +|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+  ++|++|++++|.+.+..+..++.+         
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            99999999987654 578999999999999999887777666554  555555555555544444333332         


Q ss_pred             -----------------------------------------------------------CCCcEEEcccCcCCccccccc
Q 037558          227 -----------------------------------------------------------SNLKSLYLYGNSLSSPILSSL  247 (518)
Q Consensus       227 -----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~l  247 (518)
                                                                                 ++|+.|++++|.+.+..+..+
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence                                                                       345555555555555445555


Q ss_pred             cCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558          248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE  327 (518)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  327 (518)
                      ..+++|+.|++++|++.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  366 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT  366 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence            55555666666666555555555555566666666666555555555555666666666666655444445555666666


Q ss_pred             eecccccccccCCccc-----------------ccccCcEEEccCccCccc-CchhhcCCCCccEEecCCCcCccccCh-
Q 037558          328 LALLYNHLSGSIPPSL-----------------GNLILRELLLSGNHFAGY-LPYNICQGGALEIFTVSENHFQGTIPT-  388 (518)
Q Consensus       328 L~l~~n~l~~~~p~~~-----------------~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-  388 (518)
                      |++++|.+++. +...                 ....++.+++++|.+.+. .+..+..+++|+.|++++|.+.+..+. 
T Consensus       367 L~Ls~N~l~~i-~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          367 LDLRDNALTTI-HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             EEEETCCSCCC-SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             EECCCCCCCcc-cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            66666555421 1100                 001233333333333332 122345788999999999999865433 


Q ss_pred             hhhcCCCCcEEEcccCccc-----cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558          389 SVRNCTSLIRVHLNGNNLT-----GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG  463 (518)
Q Consensus       389 ~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  463 (518)
                      .+..+++|+.|++++|.++     +..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence            3456899999999999997     34456788899999999999999988888899999999999999999976666555


Q ss_pred             CCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       464 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                        ++|+.|++++|++.+..|..+   ++|+.+++++|++.+..+
T Consensus       526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence              899999999999999988765   578999999999987544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-45  Score=393.01  Aligned_cols=394  Identities=22%  Similarity=0.290  Sum_probs=341.0

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEEC-CCCCCCcCCCccC----------------------------------
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI-DTNKLDGSIPPEV----------------------------------  151 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~~p~~l----------------------------------  151 (518)
                      .+++.|+|+++.+.|.+|+.++.+++|++|+| ++|.+.|..|...                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            58999999999999999999999999999999 8887766533220                                  


Q ss_pred             -----------------CCCCCCcEEEccC--CCCCccCCcCCcCCCCCCEEEccCccccc-----------------cC
Q 037558          152 -----------------GQLSSMEVFFLCS--NYLNGSVPPSLGNLSHISLLFIYDNLFSG-----------------FI  195 (518)
Q Consensus       152 -----------------~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-----------------~~  195 (518)
                                       .....++.+.+..  |.+.+ +|..++++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             1122333344433  67776 89999999999999999999998                 38


Q ss_pred             Ccccc--CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCc-CCc-cccccccCCC-------CCCEeeCcCCCCc
Q 037558          196 PSDIG--NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSS-PILSSLGKFK-------SLIDLQLNENQFT  264 (518)
Q Consensus       196 ~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~~~  264 (518)
                      |..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++       +|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99988  99999999999999999999999999999999999998 888 7887666554       9999999999999


Q ss_pred             cCCcc--cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCC-CCeeecccccccccCCc
Q 037558          265 GYIPR--SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN-LKELALLYNHLSGSIPP  341 (518)
Q Consensus       265 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~p~  341 (518)
                       .+|.  .+..+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             7888  8999999999999999998 888 8999999999999999999 88888999999 999999999998 7887


Q ss_pred             cccc---ccCcEEEccCccCcccCchhh---c--CCCCccEEecCCCcCccccChhh-hcCCCCcEEEcccCccccccCh
Q 037558          342 SLGN---LILRELLLSGNHFAGYLPYNI---C--QGGALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGNNLTGNISE  412 (518)
Q Consensus       342 ~~~~---~~L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~  412 (518)
                      .+..   ..|+.|++++|.+.+.+|...   .  ...+|+.|++++|.+. .+|..+ ..+++|+.|+|++|+++ .+|.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            7655   349999999999998766432   2  3458999999999999 566655 48999999999999999 4454


Q ss_pred             hhhC--------CCCCCEEecccCccccccCcccc--CCCCCCEEEccCCccccCccccccCCCCCCEEeCcC------C
Q 037558          413 ALAI--------YPNLTFIDLSRNNFYGEISSNWG--KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL------N  476 (518)
Q Consensus       413 ~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~------n  476 (518)
                      .+..        +++|+.|+|++|++. .+|..+.  .+++|+.|++++|++.+ +|..+..+++|+.|+|++      |
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N  792 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN  792 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence            4332        239999999999999 7788776  89999999999999996 898999999999999976      8


Q ss_pred             cCcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558          477 HIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK  511 (518)
Q Consensus       477 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~  511 (518)
                      ++.+.+|..+.++++|+.|++++|++ +.||..+.
T Consensus       793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            88999999999999999999999999 99998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=374.88  Aligned_cols=411  Identities=16%  Similarity=0.180  Sum_probs=241.5

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+..+. .+.++++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            4566666666666554433 5666666666666666666655666666666666666666666 45544  566666666


Q ss_pred             ccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC--cEEEcccCcC--CCCcchhccCCC-CCcEEEcc
Q 037558          162 LCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI--FNLDLSSNQF--SGPIPLFFGNLS-NLKSLYLY  235 (518)
Q Consensus       162 L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~l~~l~-~L~~L~l~  235 (518)
                      +++|.+.+ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..+. +...++++
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            66666654 355666666666666666666654   234455555  6666666666  444444444322 11122222


Q ss_pred             cCcCCcccc-ccccCCCCCCEeeCcCCC-------CccCCcccccCCC---------------------------CCcEE
Q 037558          236 GNSLSSPIL-SSLGKFKSLIDLQLNENQ-------FTGYIPRSFGNLT---------------------------SLSTL  280 (518)
Q Consensus       236 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~---------------------------~L~~L  280 (518)
                      +|.+.+..+ ..+..+++|+.+++++|.       +.+.+| .+..++                           +|++|
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence            222222111 122234444444444443       222222 233333                           45555


Q ss_pred             EccCCcCcccCcccc-----CCCCCccEEEccCCcccccCC-ccCcCC---CCCCeeecccccccccCCcccccccCcEE
Q 037558          281 RLSKNELFGSIPDEI-----GKMRSLSVLDLNENQFKGVLP-PSISNL---TNLKELALLYNHLSGSIPPSLGNLILREL  351 (518)
Q Consensus       281 ~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~~~L~~L  351 (518)
                      ++++|++++.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+. +.....+.|++|
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L  329 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHL  329 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEE
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCCcccEE
Confidence            555555555555554     5555555555555555  233 222222   4466666666655422 111122667777


Q ss_pred             EccCccCcccCchhhcCCCCccEEecCCCcCcc--ccChhhhcCCCCcEEEcccCccccccCh-hhhCCCCCCEEecccC
Q 037558          352 LLSGNHFAGYLPYNICQGGALEIFTVSENHFQG--TIPTSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRN  428 (518)
Q Consensus       352 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n  428 (518)
                      ++++|.+.+..|..+..+++|+.|++++|.+.+  .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence            777777777777777777777777777777765  4456667777777777777777763443 4666777777777777


Q ss_pred             ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEECcCCccccccC
Q 037558          429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      ++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|++.+..+
T Consensus       410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            77666555443  57777777777777 66666667777777777777777 34443 6777777777777777766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-43  Score=369.76  Aligned_cols=425  Identities=19%  Similarity=0.179  Sum_probs=297.5

Q ss_pred             eeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCC
Q 037558           76 ISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLS  155 (518)
Q Consensus        76 ~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  155 (518)
                      ..|...+ +  .+.+++++.. +|. .+  .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|++++
T Consensus         2 ~~C~~~~-~--c~~~~~~l~~-ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   74 (549)
T 2z81_A            2 LSCDASG-V--CDGRSRSFTS-IPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG   74 (549)
T ss_dssp             CEECTTS-E--EECTTSCCSS-CCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCc-e--EECCCCcccc-ccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence            3575433 3  6888877764 444 33  37999999999999988888999999999999999999988888999999


Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcc-hhccCCCCCcEEE
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIP-LFFGNLSNLKSLY  233 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~  233 (518)
                      +|++|++++|.+.+..|..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            99999999999997777779999999999999999987 456789999999999999998544554 6899999999999


Q ss_pred             cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC--cc-ccCCCCCccEEEccCCc
Q 037558          234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI--PD-EIGKMRSLSVLDLNENQ  310 (518)
Q Consensus       234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--p~-~~~~l~~L~~L~l~~n~  310 (518)
                      +++|.+++..|..++.+++|++|++++|.+.......+..+++|++|++++|++++..  |. ....+++|+.|++++|.
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            9999999999999999999999999999887433333457899999999999998642  22 22457889999999988


Q ss_pred             ccccCCc----cCcCCCCCCeeecccccccc-------------------------------------------------
Q 037558          311 FKGVLPP----SISNLTNLKELALLYNHLSG-------------------------------------------------  337 (518)
Q Consensus       311 l~~~~~~----~l~~l~~L~~L~l~~n~l~~-------------------------------------------------  337 (518)
                      +.+..+.    .+..+++|+.+++++|.+.+                                                 
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~  314 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR  314 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence            7643221    22334444444444444332                                                 


Q ss_pred             ---------cCCcccc--cccCcEEEccCccCcccCch---hhcCCCCccEEecCCCcCccccC--hhhhcCCCCcEEEc
Q 037558          338 ---------SIPPSLG--NLILRELLLSGNHFAGYLPY---NICQGGALEIFTVSENHFQGTIP--TSVRNCTSLIRVHL  401 (518)
Q Consensus       338 ---------~~p~~~~--~~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L  401 (518)
                               .+|..+.  .++|++|++++|.+.+.+|.   .+..+++|+.|++++|.+++..+  ..+..+++|++|++
T Consensus       315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L  394 (549)
T 2z81_A          315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI  394 (549)
T ss_dssp             EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred             EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence                     2222221  14444444444444443321   13334444444444444442211  22344444444444


Q ss_pred             ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCccc
Q 037558          402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE  481 (518)
Q Consensus       402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  481 (518)
                      ++|+++ .+|..+..+++|++|++++|++.+ ++..+  .++|++|++++|++++.    +..+++|++|++++|++. .
T Consensus       395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~  465 (549)
T 2z81_A          395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-T  465 (549)
T ss_dssp             TTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-S
T ss_pred             CCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-c
Confidence            444444 233344444445555555544442 12111  13455555555555432    246889999999999998 6


Q ss_pred             CCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558          482 IPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       482 ~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      +|. ...+++|++|++++|++.+.+|..+.++++|+
T Consensus       466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            675 56799999999999999998888888888876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=365.33  Aligned_cols=414  Identities=20%  Similarity=0.207  Sum_probs=333.3

Q ss_pred             EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558           85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS  164 (518)
Q Consensus        85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~  164 (518)
                      +.++++++++.. +|. .+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~~-ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSS-CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccc-ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            468999999984 555 444  8999999999999888888999999999999999999988899999999999999999


Q ss_pred             CCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC--cEEEcccCcC--
Q 037558          165 NYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL--KSLYLYGNSL--  239 (518)
Q Consensus       165 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--  239 (518)
                      |.+. .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            9998 56766  89999999999999987 578899999999999999999986   456677778  9999999999  


Q ss_pred             CccccccccCCC-CCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCc-------CcccCccccCCCCCccEE------
Q 037558          240 SSPILSSLGKFK-SLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNE-------LFGSIPDEIGKMRSLSVL------  304 (518)
Q Consensus       240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L------  304 (518)
                      .+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|.       +.+.+| .+..+++|+.|      
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            777787777765 34456788888776554 356789999999999986       444444 45555555554      


Q ss_pred             ---------------------EccCCcccccCCccC-----cCCCCCCeeecccccccccCCc-cc----ccccCcEEEc
Q 037558          305 ---------------------DLNENQFKGVLPPSI-----SNLTNLKELALLYNHLSGSIPP-SL----GNLILRELLL  353 (518)
Q Consensus       305 ---------------------~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~p~-~~----~~~~L~~L~l  353 (518)
                                           ++++|.+.+.+|..+     ..+++|+.+++++|.+  .+|. .+    ...+++.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence                                 445555544455444     4555555555555554  2331 11    1135777777


Q ss_pred             cCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcccc--ccChhhhCCCCCCEEecccCccc
Q 037558          354 SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG--NISEALAIYPNLTFIDLSRNNFY  431 (518)
Q Consensus       354 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  431 (518)
                      ++|.+.+...  ...+++|+.|++++|.+.+..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++.
T Consensus       310 ~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          310 SGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             CCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            7777654321  2577899999999999998899999999999999999999997  56678999999999999999999


Q ss_pred             cccCc-cccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCcc-
Q 037558          432 GEISS-NWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFI-  509 (518)
Q Consensus       432 ~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~-  509 (518)
                      +.+|. .+..+++|++|++++|++++.+|..+.  ++|++|++++|++. .+|..+..+++|++|++++|++. .+|.. 
T Consensus       388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~  463 (520)
T 2z7x_B          388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI  463 (520)
T ss_dssp             CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred             cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence            85554 478899999999999999988777664  79999999999999 88888889999999999999997 68876 


Q ss_pred             CccCCCCC
Q 037558          510 NKVCSSLE  517 (518)
Q Consensus       510 l~~l~~L~  517 (518)
                      +..+++|+
T Consensus       464 ~~~l~~L~  471 (520)
T 2z7x_B          464 FDRLTSLQ  471 (520)
T ss_dssp             TTTCTTCC
T ss_pred             hccCCccc
Confidence            77887775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.5e-42  Score=351.82  Aligned_cols=363  Identities=20%  Similarity=0.142  Sum_probs=235.8

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC-CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI-PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF  185 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  185 (518)
                      ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            68999999999998888888999999999999999887555 56689999999999999999888888899999999999


Q ss_pred             ccCccccccCCcc--ccCCCCCcEEEcccCcCCCCcchh-ccCCCCCcEEEcccCcCCccccccccCC--CCCCEeeCcC
Q 037558          186 IYDNLFSGFIPSD--IGNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSLSSPILSSLGKF--KSLIDLQLNE  260 (518)
Q Consensus       186 l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~  260 (518)
                      +++|.+.+..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+++.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999988755444  888889999999999888776765 7888888888888888888777777665  5777888888


Q ss_pred             CCCccCCccc--------ccCCCCCcEEEccCCcCcccCccccCCC---CCccEEEccCCcccccCCccCcCCCCCCeee
Q 037558          261 NQFTGYIPRS--------FGNLTSLSTLRLSKNELFGSIPDEIGKM---RSLSVLDLNENQFKGVLPPSISNLTNLKELA  329 (518)
Q Consensus       261 n~~~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  329 (518)
                      |.+.+..+..        +..+++|++|++++|++++..|..+...   ++|+.|++++|...+.... .          
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~----------  258 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-H----------  258 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-C----------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-h----------
Confidence            8777544332        2244566677777766665555544332   5666666666655432110 0          


Q ss_pred             cccccccccCCccc---ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcc
Q 037558          330 LLYNHLSGSIPPSL---GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL  406 (518)
Q Consensus       330 l~~n~l~~~~p~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  406 (518)
                         +.+.+..+..+   ..+.++.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++
T Consensus       259 ---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          259 ---TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             ---CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence               01110111111   113455555555555555555555555555555555555544455555555555555555555


Q ss_pred             ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC
Q 037558          407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP  483 (518)
Q Consensus       407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  483 (518)
                      ++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            55445555555555555555555554445555555555555555555554333344555555555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-41  Score=347.66  Aligned_cols=364  Identities=19%  Similarity=0.182  Sum_probs=312.8

Q ss_pred             CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccC-CcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 037558          131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV-PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLD  209 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  209 (518)
                      ++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            78999999999999888999999999999999999987555 56789999999999999999998899999999999999


Q ss_pred             cccCcCCCCcchh--ccCCCCCcEEEcccCcCCcccccc-ccCCCCCCEeeCcCCCCccCCcccccCC--CCCcEEEccC
Q 037558          210 LSSNQFSGPIPLF--FGNLSNLKSLYLYGNSLSSPILSS-LGKFKSLIDLQLNENQFTGYIPRSFGNL--TSLSTLRLSK  284 (518)
Q Consensus       210 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~  284 (518)
                      +++|.+++..+..  ++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998755554  889999999999999999877766 8899999999999999998888877765  7899999999


Q ss_pred             CcCcccCccc--------cCCCCCccEEEccCCcccccCCccCcCC---CCCCeeecccccccccCCcccccccCcEEEc
Q 037558          285 NELFGSIPDE--------IGKMRSLSVLDLNENQFKGVLPPSISNL---TNLKELALLYNHLSGSIPPSLGNLILRELLL  353 (518)
Q Consensus       285 n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l  353 (518)
                      |.+.+..+..        +..+++|++|++++|.+.+..|..+...   ++|+.|++++|...+....            
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  257 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------  257 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence            9988654433        2356899999999999988777665433   7899999998876643221            


Q ss_pred             cCccCcccCchhhc--CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccc
Q 037558          354 SGNHFAGYLPYNIC--QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY  431 (518)
Q Consensus       354 ~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  431 (518)
                       .+.+.+..+..+.  ..++|+.+++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       258 -~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          258 -HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             -CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence             1112222122222  3468999999999999888999999999999999999999988999999999999999999999


Q ss_pred             cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          432 GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       432 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      +..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+.+|
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888889999999999999999998888999999999999999999998777778999999999999999999988

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-40  Score=354.52  Aligned_cols=421  Identities=23%  Similarity=0.195  Sum_probs=319.7

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      ..++.++|++|.+.+..+. .|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            3789999999999865554 899999999999999999888888899999999999999999966667799999999999


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC----cEEEccc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL----KSLYLYG  236 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~  236 (518)
                      +++|.+.+..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+.++    ..++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999997766779999999999999999876 467888999999999999999987766665443332    2444554


Q ss_pred             CcCCccccccc------------------------cCC------------------------------------------
Q 037558          237 NSLSSPILSSL------------------------GKF------------------------------------------  250 (518)
Q Consensus       237 n~~~~~~~~~l------------------------~~l------------------------------------------  250 (518)
                      |.+....+..+                        ..+                                          
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            44432211111                        111                                          


Q ss_pred             ---------------CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc-------------------cccC
Q 037558          251 ---------------KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-------------------DEIG  296 (518)
Q Consensus       251 ---------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-------------------~~~~  296 (518)
                                     .+++.+.+.++.+...  ..+.....++.|++.+|.+.+..+                   ....
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                           1122222222211110  112334456666666665442211                   1123


Q ss_pred             CCCCccEEEccCCcccc--cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCcc
Q 037558          297 KMRSLSVLDLNENQFKG--VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALE  373 (518)
Q Consensus       297 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~  373 (518)
                      .+++|+.+++++|.+..  ..+..+..+.+|+.+++..+......+.......++.+++..+......+ ..+..+.+++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            45677777777776642  34445556677777777777766544444444788888888877665543 4567788999


Q ss_pred             EEecCCCcCccccChhhhcCCCCcEEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCC
Q 037558          374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN  452 (518)
Q Consensus       374 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n  452 (518)
                      .++++.|.+.+..+..+..++.++.|++++|++. ...|..+..+++|++|+|++|++++..|..|.++++|++|++++|
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N  528 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  528 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence            9999999998888888889999999999999754 457788999999999999999999888999999999999999999


Q ss_pred             ccccCccccccCCCCCCEEeCcCCcCcccCCccccCC-CCCCEEECcCCccccc
Q 037558          453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT  505 (518)
Q Consensus       453 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~  505 (518)
                      ++++..|..|..+++|++|+|++|++.+..|..+..+ ++|++|++++|++.+.
T Consensus       529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9998888889999999999999999999999999888 6899999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.7e-41  Score=351.12  Aligned_cols=407  Identities=18%  Similarity=0.204  Sum_probs=293.7

Q ss_pred             EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558           85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS  164 (518)
Q Consensus        85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~  164 (518)
                      +.++++++++.+ +|. .+.  +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus        34 ~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            789999999886 554 333  8999999999999988888999999999999999999988899999999999999999


Q ss_pred             CCCCccCCcCCcCCCCCCEEEccCcccccc-CCccccCCCCCcEEEcccCcCCCCcchhccCCCCC--cEEEcccCcC--
Q 037558          165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL--KSLYLYGNSL--  239 (518)
Q Consensus       165 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--  239 (518)
                      |.+. .+|..  .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            9998 67766  899999999999999873 568999999999999999999864   34445555  9999999998  


Q ss_pred             CccccccccCCC-CCCEeeCcCCCCccCCcc-cccCCCCCcEEEccCC----------------------------cCcc
Q 037558          240 SSPILSSLGKFK-SLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKN----------------------------ELFG  289 (518)
Q Consensus       240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n----------------------------~l~~  289 (518)
                      ++..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|                            .+.+
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            776776666543 011233344443332221 1122333333333332                            2221


Q ss_pred             c----CccccCCCCCccEEEccCCcccccCCccC-----cCC--------------------------CCCCeeeccccc
Q 037558          290 S----IPDEIGKMRSLSVLDLNENQFKGVLPPSI-----SNL--------------------------TNLKELALLYNH  334 (518)
Q Consensus       290 ~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~l~~n~  334 (518)
                      .    ++..+ ..++|++|++++|.+.|.+|..+     ..+                          .+|+.|++++|.
T Consensus       264 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          264 KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence            0    11111 12356666666666665555443     222                          346666666666


Q ss_pred             ccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcc--ccChhhhcCCCCcEEEcccCccccccC-
Q 037558          335 LSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG--TIPTSVRNCTSLIRVHLNGNNLTGNIS-  411 (518)
Q Consensus       335 l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-  411 (518)
                      +... +.....+.+++|++++|.+.+..|..+..+++|+.|++++|.+.+  .+|..+..+++|++|++++|++++.++ 
T Consensus       343 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          343 FIHM-VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCC-CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred             cccc-cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence            5421 111223678888888888888788888888888888888888875  334567788888888888888887343 


Q ss_pred             hhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc-ccCCC
Q 037558          412 EALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLN  490 (518)
Q Consensus       412 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~  490 (518)
                      ..+..+++|++|++++|++++..+..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++. .+|.. +..++
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  497 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT  497 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence            4577788888888888888766655443  68888888888887 67776778888888888888888 45554 78888


Q ss_pred             CCCEEECcCCccccccC
Q 037558          491 SLTKLILRGNQRAVTLS  507 (518)
Q Consensus       491 ~L~~L~l~~n~~~~~ip  507 (518)
                      +|+.|++++|++.+..|
T Consensus       498 ~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          498 SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCCCEECCSCCBCCCHH
T ss_pred             CCCEEEecCCCcCCCcc
Confidence            88888888888877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-42  Score=333.01  Aligned_cols=292  Identities=27%  Similarity=0.491  Sum_probs=237.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCc--cCceeeCCC---CCEEEEEcCCCCCcc--ccCCcc
Q 037558           30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCA--WYGISCNDA---GRVINISLRNTGLSG--TLHGFS  102 (518)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~--w~g~~c~~~---~~v~~l~l~~~~~~~--~~~~~~  102 (518)
                      .|.++|++||++||+++.+ +. .+.+|..+       .+||.  |.||.|+..   ++|++++++++.+.|  .+|. .
T Consensus         2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~~~-------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~   71 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGN-PT-TLSSWLPT-------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-S   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-CG-GGTTCCTT-------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-G
T ss_pred             CCCHHHHHHHHHHHHhcCC-cc-cccCCCCC-------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-h
Confidence            5889999999999999965 43 68899765       68998  999999864   789999999999988  7777 8


Q ss_pred             CCCCCCCcEEeCCC-CCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558          103 FSSFPRLAYLDLTG-SGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI  181 (518)
Q Consensus       103 l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  181 (518)
                      +.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            88899999999984 88888888888888999999999888888888888888888888888888888888888888888


Q ss_pred             CEEEccCccccccCCccccCCC-CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcC
Q 037558          182 SLLFIYDNLFSGFIPSDIGNSK-SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE  260 (518)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  260 (518)
                      ++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            8888888888888888888887 888888888888877777777776 88888888887777777777777788888877


Q ss_pred             CCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccc
Q 037558          261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNH  334 (518)
Q Consensus       261 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  334 (518)
                      |.+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            777755554 666777777777777777777777777777777777777777776654 666777777777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.4e-40  Score=334.04  Aligned_cols=382  Identities=21%  Similarity=0.249  Sum_probs=277.9

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCC-------------CEEECCCCCCCcCC
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHL-------------KFLFIDTNKLDGSI  147 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~  147 (518)
                      ..++++++++++.+ |.+|. .++++++|++|++++|.+.+.+|..++.+.+|             ++|++++|.+++ +
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            35788999999999 88988 89999999999999999999999999998865             999999999984 5


Q ss_pred             CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558          148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS  227 (518)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  227 (518)
                      |..   .++|++|++++|.+.+ +|..   .++|++|++++|.+.+. +..   .++|++|++++|.+++ +| .++.++
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            552   3789999999999986 6654   37999999999998853 221   2699999999999996 67 599999


Q ss_pred             CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558          228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN  307 (518)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  307 (518)
                      +|++|++++|.+++ +|..+   .+|++|++++|++++ +| .+..+++|++|++++|++++ +|..   .++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            99999999999987 55443   589999999999996 56 58999999999999999985 5543   3689999999


Q ss_pred             CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558          308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP  387 (518)
Q Consensus       308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  387 (518)
                      +|.+. .+| .+..+++|++|++++|.+++ +|..  ..+++.|++++|.+.+ +|..   .++|+.|++++|.+++ +|
T Consensus       224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~  293 (454)
T 1jl5_A          224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS  293 (454)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES
T ss_pred             CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc
Confidence            99998 677 48899999999999999985 5543  2789999999999887 4432   3789999999999986 22


Q ss_pred             hhhhcCCCCcEEEcccCccccccChhhhCC-CCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCC
Q 037558          388 TSVRNCTSLIRVHLNGNNLTGNISEALAIY-PNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS  466 (518)
Q Consensus       388 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  466 (518)
                      .   ..++|++|++++|++++..     .+ ++|++|++++|++.+ +|..   +++|++|++++|+++ .+|.   .++
T Consensus       294 ~---~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~  357 (454)
T 1jl5_A          294 E---LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ  357 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             C---cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence            2   1268999999999998632     23 589999999999986 5543   689999999999998 5666   478


Q ss_pred             CCCEEeCcCCcCcc--cCCccccCC-------------CCCCEEECcCCcccc--ccCccCccCC
Q 037558          467 QLQALDLSLNHIVG--EIPKELGKL-------------NSLTKLILRGNQRAV--TLSFINKVCS  514 (518)
Q Consensus       467 ~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~ip~~l~~l~  514 (518)
                      +|++|++++|++.+  .+|.+++.+             ++|++|++++|++.+  .+|.++.++.
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~  422 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR  422 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence            99999999999998  788888877             889999999999998  8998876653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=339.49  Aligned_cols=389  Identities=19%  Similarity=0.205  Sum_probs=295.5

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|+.|..+++|++|++++|.++ .+|..  .+++|++|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L  126 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL  126 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred             CCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence            46899999999999876655 8999999999999999999888999999999999999999998 67776  89999999


Q ss_pred             EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC--cEEEcccCcC--CCCcchhccCC---------
Q 037558          161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI--FNLDLSSNQF--SGPIPLFFGNL---------  226 (518)
Q Consensus       161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~l~~l---------  226 (518)
                      ++++|.+.+ .+|..+.++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..+         
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            999999986 4568899999999999999999864   45555666  9999999999  76666666543         


Q ss_pred             -----------------CCCcEEEcccCcCC----ccccccccCCCCCCEeeCcCCCCccC----CcccccCCCCCcEEE
Q 037558          227 -----------------SNLKSLYLYGNSLS----SPILSSLGKFKSLIDLQLNENQFTGY----IPRSFGNLTSLSTLR  281 (518)
Q Consensus       227 -----------------~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~  281 (518)
                                       ++|+.+++++|...    ......+..++.++.+++.++.+.+.    ++..+ ..++|++|+
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~  282 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLN  282 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEE
Confidence                             34455555444210    00011122233333333322222210    00111 123555555


Q ss_pred             ccCCcCcccCcccc-----CCC--------------------------CCccEEEccCCcccccCCccCcCCCCCCeeec
Q 037558          282 LSKNELFGSIPDEI-----GKM--------------------------RSLSVLDLNENQFKGVLPPSISNLTNLKELAL  330 (518)
Q Consensus       282 l~~n~l~~~~p~~~-----~~l--------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  330 (518)
                      +++|.+++.+|..+     ..+                          .+|++|++++|.+....  ....+++|++|++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            55555555555443     112                          45777777777765321  1267899999999


Q ss_pred             ccccccccCCccccc-ccCcEEEccCccCcc--cCchhhcCCCCccEEecCCCcCccccCh-hhhcCCCCcEEEcccCcc
Q 037558          331 LYNHLSGSIPPSLGN-LILRELLLSGNHFAG--YLPYNICQGGALEIFTVSENHFQGTIPT-SVRNCTSLIRVHLNGNNL  406 (518)
Q Consensus       331 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l  406 (518)
                      ++|.+++..|..+.. ++|+.|++++|.+.+  .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            999999888877766 899999999999987  3456788999999999999999985655 477899999999999999


Q ss_pred             ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccc-ccCCCCCCEEeCcCCcCcccCC
Q 037558          407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLSLNHIVGEIP  483 (518)
Q Consensus       407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~  483 (518)
                      ++..+..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..+
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            987665554  79999999999998 66776779999999999999999 56665 8999999999999999986443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.3e-38  Score=337.21  Aligned_cols=407  Identities=20%  Similarity=0.169  Sum_probs=300.3

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      +++++|+|++|.+++..+.+|.++++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999998888889999999999999999999777778999999999999999999666677999999999999


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCC-CcchhccCCCCCcEEEcccCcCCccccccccCCCCC----CEeeCcCC
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL----IDLQLNEN  261 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n  261 (518)
                      ++|++++..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|.+++..+..+..+.++    ..++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9999998888889999999999999999975 467888999999999999999998777777655433    35666666


Q ss_pred             CCccCCcccccCCCCCcEEEcc----------------------------------------------------------
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLS----------------------------------------------------------  283 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~----------------------------------------------------------  283 (518)
                      .+....+..+ ....+..+++.                                                          
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            6553222211 11112222222                                                          


Q ss_pred             ------------------------CCcCcccCccccCCCCCccEEEccCCcccccCCcc-------------------Cc
Q 037558          284 ------------------------KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-------------------IS  320 (518)
Q Consensus       284 ------------------------~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------l~  320 (518)
                                              ++.+...  ..+.....++.|++.+|.+.+..+..                   ..
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                                    2221110  11223345555555555544221111                   11


Q ss_pred             CCCCCCeeeccccccccc--CCcccc-cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhcCCCC
Q 037558          321 NLTNLKELALLYNHLSGS--IPPSLG-NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRNCTSL  396 (518)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~--~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L  396 (518)
                      .+++|+.+++++|.+...  .+.... ...++.+++..+.... .+..+..+++|+.+++..+......+ ..+..+.++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence            233344444444333211  111111 1334444444443332 22334556677777777665544333 456778999


Q ss_pred             cEEEcccCccccccChhhhCCCCCCEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcC
Q 037558          397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL  475 (518)
Q Consensus       397 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  475 (518)
                      +.++++.|.+.+..+..+..+++++.|++++|++. +..|..+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            99999999999888999999999999999999854 45788899999999999999999988899999999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEECcCCccccccCccCccC-CCCC
Q 037558          476 NHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC-SSLE  517 (518)
Q Consensus       476 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l-~~L~  517 (518)
                      |++.+..|..+..+++|++|++++|++.+.+|..+.++ ++|+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            99999989999999999999999999999999988877 4564

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.5e-38  Score=320.71  Aligned_cols=347  Identities=24%  Similarity=0.367  Sum_probs=289.1

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..++++++|+++++.+.. ++ .+..+++|++|++++|.+++ +|. ++++++|++|++++|.+.+..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346789999999998854 44 48889999999999999985 444 9999999999999999985544  899999999


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |++++|.+.+..+  +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.  ..+..+++|++|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence            9999999987643  89999999999999999853 3 48899999999997 444442  2388999999999999998


Q ss_pred             ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558          264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL  343 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~  343 (518)
                      .+.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ ..
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~  262 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LS  262 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hh
Confidence            854  348889999999999999986555  67789999999999999853  467889999999999999886544 33


Q ss_pred             ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEE
Q 037558          344 GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI  423 (518)
Q Consensus       344 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  423 (518)
                      ..++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|+.|
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            34789999999998887654  7788899999999998886544  7788999999999999887665  6788999999


Q ss_pred             ecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcc
Q 037558          424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG  480 (518)
Q Consensus       424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  480 (518)
                      ++++|++.+.  ..+..+++|++|++++|++.+..|  +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999988865  467888999999999999887666  7888999999999998876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-37  Score=319.00  Aligned_cols=344  Identities=25%  Similarity=0.364  Sum_probs=296.0

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.. ++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+. +. ++++++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEE
Confidence            478999999988764 44  47889999999999999876544  99999999999999999854 44 99999999999


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS  241 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (518)
                      +++|.+.+. +. +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+..  .+..+++|++|++++|.+.+
T Consensus       119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence            999999854 33 89999999999999998864 3 58999999999997 4454333  38899999999999999887


Q ss_pred             cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558          242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN  321 (518)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  321 (518)
                      .  ..+..+++|++|++++|.+.+..|  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..+  +..
T Consensus       192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            3  458899999999999999987655  7789999999999999875 3 357889999999999999986544  788


Q ss_pred             CCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEc
Q 037558          322 LTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL  401 (518)
Q Consensus       322 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  401 (518)
                      +++|+.|++++|.+++..+ ....+.|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..|  +..+++|++|++
T Consensus       264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence            9999999999999986444 3344899999999999988655  7888999999999999997765  778999999999


Q ss_pred             ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcccc
Q 037558          402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG  456 (518)
Q Consensus       402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  456 (518)
                      ++|++++.  ..+..+++|+.|++++|++.+..|  +..+++|++|++++|.+++
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999976  578899999999999999998776  8899999999999999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.3e-38  Score=318.50  Aligned_cols=354  Identities=18%  Similarity=0.203  Sum_probs=227.2

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+. |  .+..+++|++|++++|.+.+. +  ++.+++|++|++++|.+++ ++  ++++++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence            4566666666666653 2  466666666666666666553 2  5666666666666666664 22  66666666666


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS  241 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (518)
                      +++|.+.+ +|  +.++++|++|++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            66666664 33  56666666666666666653   2566666666666666444333  35566666666666666665


Q ss_pred             cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558          242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN  321 (518)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  321 (518)
                       ++  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++..   ...
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~  252 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST  252 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence             22  55666666666666666643   25566666666666666664 44  556666666666666666432   334


Q ss_pred             CCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEc
Q 037558          322 LTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL  401 (518)
Q Consensus       322 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  401 (518)
                      +++|+.|+++.|             .++.+++++|.+.+.+|  ...+++|+.|++++|...+.+|.   ..++|+.|++
T Consensus       253 l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l  314 (457)
T 3bz5_A          253 LSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL  314 (457)
T ss_dssp             CTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC
T ss_pred             CCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech
Confidence            556666665544             34566677777666665  35567777777777776666553   2344554444


Q ss_pred             ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCccc
Q 037558          402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE  481 (518)
Q Consensus       402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  481 (518)
                      ++             +++|++|++++|++++. +  +..+++|+.|++++|++++        ++.|..|++++|.+.|.
T Consensus       315 ~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          315 SQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE  370 (457)
T ss_dssp             TT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred             hh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence            44             36888889999988874 2  7788889999999988875        24567778888888765


Q ss_pred             CCccccCCCCCCEEECcCCccccccCccCc
Q 037558          482 IPKELGKLNSLTKLILRGNQRAVTLSFINK  511 (518)
Q Consensus       482 ~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~  511 (518)
                           +.+..|..+++++|+++|.||..+.
T Consensus       371 -----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          371 -----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             -----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             -----ceeeecCccccccCcEEEEcChhHh
Confidence                 3455677788999999999887653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.3e-37  Score=312.89  Aligned_cols=359  Identities=22%  Similarity=0.260  Sum_probs=277.9

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCC-------------cEEEccCCCCCccC
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM-------------EVFFLCSNYLNGSV  171 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L-------------~~L~L~~n~~~~~~  171 (518)
                      +.+.|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++.+|             ++|++++|.+.+ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            468999999999999 8999999999999999999999999999999998865             999999999884 4


Q ss_pred             CcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCC
Q 037558          172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK  251 (518)
Q Consensus       172 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  251 (518)
                      |..   .++|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++|++|++++|.+++ +| .++.++
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            542   3789999999999997 5643   4899999999999985 3321   2689999999999997 66 599999


Q ss_pred             CCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecc
Q 037558          252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL  331 (518)
Q Consensus       252 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  331 (518)
                      +|++|++++|++++ +|..   .++|++|++++|++++ +| .++.+++|++|++++|.+.+ +|..   .++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            99999999999986 5553   3589999999999986 66 58999999999999999985 4543   3689999999


Q ss_pred             cccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccC
Q 037558          332 YNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNIS  411 (518)
Q Consensus       332 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  411 (518)
                      +|.+. .+|.....++|++|++++|.+.+. |.   ..++|+.|++++|.+.+ +|..   .++|++|++++|++++...
T Consensus       224 ~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          224 NNILE-ELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             SSCCS-SCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC
T ss_pred             CCcCC-cccccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC
Confidence            99998 677644448999999999999863 33   23789999999999985 5543   4899999999999997321


Q ss_pred             hhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCC
Q 037558          412 EALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNS  491 (518)
Q Consensus       412 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  491 (518)
                          ..++|+.|++++|++.+. +.   ..++|++|++++|++.+ +|..   +++|++|++++|++. .+|.   .+++
T Consensus       295 ----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~  358 (454)
T 1jl5_A          295 ----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN  358 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             ----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence                126899999999999853 21   12599999999999995 6654   589999999999998 5666   5799


Q ss_pred             CCEEECcCCcccc--ccCccCccC
Q 037558          492 LTKLILRGNQRAV--TLSFINKVC  513 (518)
Q Consensus       492 L~~L~l~~n~~~~--~ip~~l~~l  513 (518)
                      |++|++++|++.+  .+|.++.++
T Consensus       359 L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          359 LKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ccEEECCCCCCCcCCCChHHHHhh
Confidence            9999999999999  899888766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-37  Score=313.99  Aligned_cols=321  Identities=19%  Similarity=0.198  Sum_probs=259.0

Q ss_pred             CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      -+.++.+++.++ .+|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            367888888887 6787664  5899999999999988788999999999999999999988899999999999999999


Q ss_pred             CcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc
Q 037558          213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP  292 (518)
Q Consensus       213 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  292 (518)
                      |.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            99987666778899999999999999998888889999999999999999988888888899999999999999987666


Q ss_pred             cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCC
Q 037558          293 DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGA  371 (518)
Q Consensus       293 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~  371 (518)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|..... .+|+.|++++|.+.+..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            77888999999999999998877778888899999999988776666554333 56777777777777555556666777


Q ss_pred             ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558          372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM  451 (518)
Q Consensus       372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~  451 (518)
                      |+.|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            77777777777665566666677777777777777766666667777777777777777655555566666777777777


Q ss_pred             Ccccc
Q 037558          452 NNITG  456 (518)
Q Consensus       452 n~l~~  456 (518)
                      |++..
T Consensus       330 N~l~c  334 (477)
T 2id5_A          330 NPLAC  334 (477)
T ss_dssp             SCEEC
T ss_pred             CCccC
Confidence            76653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=311.72  Aligned_cols=321  Identities=19%  Similarity=0.190  Sum_probs=288.5

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      +.++.+++.+. .+|..+  .+++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56788887774 456544  368999999999999888889999999999999999999888999999999999999999


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcc
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR  269 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  269 (518)
                      .+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            99987777789999999999999999988888999999999999999999998888999999999999999999987777


Q ss_pred             cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccC
Q 037558          270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LIL  348 (518)
Q Consensus       270 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L  348 (518)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+.. +.|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            8999999999999999999888888999999999999999888777777667779999999999998433334444 889


Q ss_pred             cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558          349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN  428 (518)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  428 (518)
                      +.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            99999999999888888999999999999999999888999999999999999999999888888899999999999999


Q ss_pred             ccccc
Q 037558          429 NFYGE  433 (518)
Q Consensus       429 ~l~~~  433 (518)
                      ++...
T Consensus       331 ~l~c~  335 (477)
T 2id5_A          331 PLACD  335 (477)
T ss_dssp             CEECS
T ss_pred             CccCc
Confidence            98743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9e-36  Score=302.64  Aligned_cols=376  Identities=17%  Similarity=0.147  Sum_probs=272.1

Q ss_pred             CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558           81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF  160 (518)
Q Consensus        81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  160 (518)
                      ..+++.++++++.+.+.    .+..+++|++|++++|.+.+. +  ++.+++|++|++++|.+++ +|  ++++++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            46899999999998873    388999999999999999874 3  8999999999999999985 54  8999999999


Q ss_pred             EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558          161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS  240 (518)
Q Consensus       161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  240 (518)
                      ++++|.+.+ +  .++++++|++|++++|+..+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.++
T Consensus       133 ~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          133 NCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             ECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            999999986 3  3889999999999999766555  48899999999999999996 44  788999999999999999


Q ss_pred             ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCC----------c
Q 037558          241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN----------Q  310 (518)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n----------~  310 (518)
                      +.   .++.+++|++|++++|++++ +|  +..+++|++|++++|++++..   +..+++|+.|++++|          .
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCc
Confidence            84   48889999999999999997 55  889999999999999998754   345666666665554          3


Q ss_pred             ccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhh
Q 037558          311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV  390 (518)
Q Consensus       311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  390 (518)
                      +.+.+|  ++.+++|+.|++++|...+.+|.  ....++.+++++|             ++|+.|++++|++++. +  +
T Consensus       276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l  335 (457)
T 3bz5_A          276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--V  335 (457)
T ss_dssp             TCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--C
T ss_pred             cCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhhc-------------ccCCEEECCCCccccc-c--c
Confidence            333332  34455666666666655544442  1133444444333             5778888888888763 2  6


Q ss_pred             hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc-CCCCCC
Q 037558          391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG-NSSQLQ  469 (518)
Q Consensus       391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~  469 (518)
                      ..+++|+.|++++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+. ...++.
T Consensus       336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~  402 (457)
T 3bz5_A          336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM  402 (457)
T ss_dssp             TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred             ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence            778888888888888775        24566667777877765     2345677788888888888876543 334444


Q ss_pred             EEeCcCCcCcccCCc--cccCCC-----CCCEEECcCCccccccCccCccCCCC
Q 037558          470 ALDLSLNHIVGEIPK--ELGKLN-----SLTKLILRGNQRAVTLSFINKVCSSL  516 (518)
Q Consensus       470 ~L~L~~n~l~~~~~~--~l~~l~-----~L~~L~l~~n~~~~~ip~~l~~l~~L  516 (518)
                      ......+........  .+.+++     -+.....++|.++|+|++.+.....+
T Consensus       403 ~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~~  456 (457)
T 3bz5_A          403 NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI  456 (457)
T ss_dssp             EEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-----
T ss_pred             eccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccccccC
Confidence            444443322111110  111222     22233445788999998777655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.7e-35  Score=291.53  Aligned_cols=313  Identities=16%  Similarity=0.165  Sum_probs=219.7

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..+++++.|+++++.+....+..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+..|..+.++++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            35678888999888876554455788888999999888888666678888888888888888888777777888888888


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888755555567788888888888888776666777777788888777777653   244556667777766665


Q ss_pred             ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558          264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL  343 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~  343 (518)
                      .+     +...++|++|++++|.+... |..  ..++|++|++++|.+.+.  ..+..++                    
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~--------------------  248 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYP--------------------  248 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCT--------------------
T ss_pred             cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCC--------------------
Confidence            53     22334566666666665532 221  234555555555555532  2344444                    


Q ss_pred             ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEE
Q 037558          344 GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI  423 (518)
Q Consensus       344 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  423 (518)
                         .|++|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++ .++..+..+++|++|
T Consensus       249 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          249 ---GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  323 (390)
T ss_dssp             ---TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             ---CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence               45555555555555555666667777777777777763 4555567788888888888887 455567778888888


Q ss_pred             ecccCccccccCccccCCCCCCEEEccCCccccC
Q 037558          424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGG  457 (518)
Q Consensus       424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~  457 (518)
                      ++++|++... +  +..+++|++|++++|++.+.
T Consensus       324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            8888888744 2  66788899999999988753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.8e-34  Score=301.57  Aligned_cols=311  Identities=16%  Similarity=0.195  Sum_probs=209.1

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      .+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46788899999888866555667888999999999999887777788889999999999998887777778888888888


Q ss_pred             EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      ++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++.   .+..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            8888888866666678888888888888888877777788888888888888887763   2445667777777777665


Q ss_pred             cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc
Q 037558          265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG  344 (518)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~  344 (518)
                      +     +...++|+.|++++|.+.. ++..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|    
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~----  271 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY----  271 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES----
T ss_pred             c-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH----
Confidence            3     2344567777777776653 22222  3566677777766664  2445555666666666555554444    


Q ss_pred             cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEe
Q 037558          345 NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID  424 (518)
Q Consensus       345 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  424 (518)
                                         ..+..+++|+.|++++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus       272 -------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          272 -------------------HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             -------------------GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             -------------------HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence                               444444455555555555543 3333444555555555555555 3344455555566666


Q ss_pred             cccCccccccCccccCCCCCCEEEccCCcccc
Q 037558          425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITG  456 (518)
Q Consensus       425 L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  456 (518)
                      +++|.+.+. +  +..+++|+.|++++|++.+
T Consensus       331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            665555532 1  3445566666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-34  Score=286.15  Aligned_cols=310  Identities=21%  Similarity=0.229  Sum_probs=211.1

Q ss_pred             CCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEE
Q 037558          154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLY  233 (518)
Q Consensus       154 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  233 (518)
                      ++++++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            57899999999988744444468889999999999999888777889999999999999999887778888889999999


Q ss_pred             cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558          234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG  313 (518)
Q Consensus       234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  313 (518)
                      +++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++.   .+..+++|+++++++|.+.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            999888875555567888888888888888877777788888888888888887743   24556778888888877763


Q ss_pred             cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558          314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC  393 (518)
Q Consensus       314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  393 (518)
                           +...++|+.|++++|.+... |...                         .++|+.|++++|.+.+.  ..+..+
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~-~~~~-------------------------~~~L~~L~l~~n~l~~~--~~l~~l  247 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVV-RGPV-------------------------NVELTILKLQHNNLTDT--AWLLNY  247 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEE-ECCC-------------------------CSSCCEEECCSSCCCCC--GGGGGC
T ss_pred             -----cCCCCcceEEECCCCeeeec-cccc-------------------------cccccEEECCCCCCccc--HHHcCC
Confidence                 23345677777777766532 2111                         13444555555544432  344555


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL  473 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  473 (518)
                      ++|++|++++|++++..+..+..+++|++|++++|++.+ ++..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence            566666666666665555556666666666666666553 2333445566666666666665 34545555566666666


Q ss_pred             cCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558          474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  504 (518)
                      ++|++.+. +  +..+++|++|++++|++.+
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            66665533 2  4455666666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.3e-33  Score=273.35  Aligned_cols=307  Identities=22%  Similarity=0.346  Sum_probs=204.6

Q ss_pred             CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc
Q 037558          151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK  230 (518)
Q Consensus       151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~  230 (518)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.++. + ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            345677788888877776 333 36677777777777777765433  6677777777777776664 2 2466666777


Q ss_pred             EEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCc
Q 037558          231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ  310 (518)
Q Consensus       231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  310 (518)
                      +|++++|.+.+..+  +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            77777666665222  5566666666666664443332 25556666666666665543222  4555566666666655


Q ss_pred             ccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhh
Q 037558          311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV  390 (518)
Q Consensus       311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  390 (518)
                      +.+. +. +..+++|+.+++++|                       .+.+..+  +..+++|+.|++++|.+.+..+  +
T Consensus       189 l~~~-~~-~~~l~~L~~L~l~~n-----------------------~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          189 IEDI-SP-LASLTSLHYFTAYVN-----------------------QITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCC-GG-GGGCTTCCEEECCSS-----------------------CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             cccc-cc-ccCCCccceeecccC-----------------------CCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            5532 21 444455555555544                       4443332  4556677777777777764333  6


Q ss_pred             hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558          391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA  470 (518)
Q Consensus       391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  470 (518)
                      ..+++|++|++++|++++.  ..+..+++|++|++++|++.+.  ..+..+++|++|++++|++.+..+..+..+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            7788888888888888754  4677888888888888888754  45778889999999999988888888888999999


Q ss_pred             EeCcCCcCcccCCccccCCCCCCEEECcCCccc
Q 037558          471 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQRA  503 (518)
Q Consensus       471 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  503 (518)
                      |++++|++.+..|  +..+++|++|++++|++.
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999887665  788999999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-33  Score=297.89  Aligned_cols=310  Identities=22%  Similarity=0.223  Sum_probs=210.1

Q ss_pred             CCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEE
Q 037558          154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLY  233 (518)
Q Consensus       154 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  233 (518)
                      +.+++.+++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56889999999998855555578889999999999999988888899999999999999999888888888899999999


Q ss_pred             cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558          234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG  313 (518)
Q Consensus       234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  313 (518)
                      +++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +  +..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence            999988876666678888888888888888887777788888888888888888753 2  4557788888888887763


Q ss_pred             cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558          314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC  393 (518)
Q Consensus       314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  393 (518)
                           +...++|+.|++++|.+....+..  .+.|+.|++++|.+.+.                          ..+..+
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--------------------------~~l~~l  253 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--------------------------AWLLNY  253 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--------------------------GGGGGC
T ss_pred             -----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--------------------------hhhccC
Confidence                 234456777777777765322211  13455555555554432                          334445


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL  473 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  473 (518)
                      ++|+.|++++|.+++..|..+..+++|+.|+|++|.+.+ +|..+..+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence            555555555555555555555555555555555555553 2333444555555555555555 34444555555555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558          474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  504 (518)
                      ++|++.+. +  +..+++|+.|++++|++.+
T Consensus       332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            55555432 1  3445555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-33  Score=274.60  Aligned_cols=308  Identities=22%  Similarity=0.374  Sum_probs=169.6

Q ss_pred             cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558          102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI  181 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  181 (518)
                      .+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+.++++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            35567888888888887754 33 37778888888888888773 444 7788888888888887763 3 357777777


Q ss_pred             CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      ++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            777777777765422  6667777777777765443333 25666666666666666554222  455555555555555


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP  341 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  341 (518)
                      .+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|++|++++|.++     
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-----  256 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQIS-----  256 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-----
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccC-----
Confidence            5543221  4445555555555555443222  34444555555555544422 11 333344444444333332     


Q ss_pred             ccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558          342 SLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT  421 (518)
Q Consensus       342 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  421 (518)
                                                                +.  ..+..+++|++|++++|++++.  ..+..+++|+
T Consensus       257 ------------------------------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          257 ------------------------------------------DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             ------------------------------------------CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             ------------------------------------------CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence                                                      11  1233344444444444444432  2344455555


Q ss_pred             EEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       422 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      .|++++|++.+..+..+..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            55555555554444445555555555555555554333  445555555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.8e-34  Score=280.75  Aligned_cols=283  Identities=19%  Similarity=0.256  Sum_probs=172.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCC---------CCCEEEEEcCCCCCccccCC
Q 037558           30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND---------AGRVINISLRNTGLSGTLHG  100 (518)
Q Consensus        30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~---------~~~v~~l~l~~~~~~~~~~~  100 (518)
                      ++..+|++||++||+.+..++.....+|..+.   ....++|.|.|+.|+.         ..+|+.++++++.+. .+|.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            45578999999999988655555567784210   0126899999999952         234555555555544 3333


Q ss_pred             ccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCC
Q 037558          101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSH  180 (518)
Q Consensus       101 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~  180 (518)
                       .+.++++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|..+...  
T Consensus        99 -~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~--  173 (328)
T 4fcg_A           99 -QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--  173 (328)
T ss_dssp             -CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred             -hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence             3444455555555554444 44444444445555555544444 444444444444444444444444444433320  


Q ss_pred             CCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcC
Q 037558          181 ISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE  260 (518)
Q Consensus       181 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  260 (518)
                                   ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++
T Consensus       174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred             -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence                         00011223667777777777666 566666677777777777777665 445566777777777777


Q ss_pred             CCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       261 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7777677777777777777777777777777777777777777777777777777777777777777777665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.9e-33  Score=269.70  Aligned_cols=253  Identities=28%  Similarity=0.449  Sum_probs=178.3

Q ss_pred             CCCEeeCcCCCCcc--CCcccccCCCCCcEEEccC-CcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCee
Q 037558          252 SLIDLQLNENQFTG--YIPRSFGNLTSLSTLRLSK-NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL  328 (518)
Q Consensus       252 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  328 (518)
                      +++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34445555555544  4445555555555555552 44444555555555555555555555555555555555555555


Q ss_pred             ecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCC-CccEEecCCCcCccccChhhhcCCCCcEEEcccCcc
Q 037558          329 ALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGG-ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL  406 (518)
Q Consensus       329 ~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  406 (518)
                      ++++|.+++.+|..+.. ++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|..+..++ |++|++++|++
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            55555555555544433 5555556666666656666666666 788888888888877888888776 88999999988


Q ss_pred             ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558          407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL  486 (518)
Q Consensus       407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  486 (518)
                      ++..+..+..+++|+.|++++|++.+..+. +..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|.. 
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            888888888899999999999998866665 778899999999999999889999999999999999999999888876 


Q ss_pred             cCCCCCCEEECcCCccccccC
Q 037558          487 GKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       487 ~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      +.+++|+.+++++|+.....|
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccccChHHhcCCCCccCCC
Confidence            888999999999998443333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.6e-36  Score=308.76  Aligned_cols=379  Identities=18%  Similarity=0.130  Sum_probs=218.2

Q ss_pred             CCCcEEeCCCCCCcccCCc-cccCCCCCCEEECCCCCCCc----CCCccCCCCCCCcEEEccCCCCCccCCcCC-cCCC-
Q 037558          107 PRLAYLDLTGSGLFGTIPP-EVGLLSHLKFLFIDTNKLDG----SIPPEVGQLSSMEVFFLCSNYLNGSVPPSL-GNLS-  179 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~-  179 (518)
                      ++|++|+++++.+...... .+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4677788877777544322 25667777888887777763    345556667777777777777654322222 1233 


Q ss_pred             ---CCCEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCCcchhcc-----CCCCCcEEEcccCcCCccc----
Q 037558          180 ---HISLLFIYDNLFSG----FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFG-----NLSNLKSLYLYGNSLSSPI----  243 (518)
Q Consensus       180 ---~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----  243 (518)
                         +|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57777777776663    3355566666666666666666543332221     2345666666666555422    


Q ss_pred             cccccCCCCCCEeeCcCCCCccCCccccc-----CCCCCcEEEccCCcCccc----CccccCCCCCccEEEccCCccccc
Q 037558          244 LSSLGKFKSLIDLQLNENQFTGYIPRSFG-----NLTSLSTLRLSKNELFGS----IPDEIGKMRSLSVLDLNENQFKGV  314 (518)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~  314 (518)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            33334445555555555555433222221     133555555555554432    233344445555555555544322


Q ss_pred             C-----CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCccc----CchhhcCCCCccEEecCCCcCccc
Q 037558          315 L-----PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGY----LPYNICQGGALEIFTVSENHFQGT  385 (518)
Q Consensus       315 ~-----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~  385 (518)
                      .     +..+..+                       +.|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.
T Consensus       243 ~~~~l~~~~~~~~-----------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          243 GMAELCPGLLHPS-----------------------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHHHHTSTT-----------------------CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHHHHHhcCC-----------------------CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            1     1111123                       4455555555555443    344555566777777777766544


Q ss_pred             cChhhhc-----CCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccccCcccc-----CCCCCCEEEccC
Q 037558          386 IPTSVRN-----CTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGEISSNWG-----KCPKLDTLNVSM  451 (518)
Q Consensus       386 ~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~ls~  451 (518)
                      .+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            3333322     25788888888877755    455666778888888888877655333332     256888888888


Q ss_pred             Ccccc----CccccccCCCCCCEEeCcCCcCcccCCcccc-----CCCCCCEEECcCCccccccCc
Q 037558          452 NNITG----GIPREIGNSSQLQALDLSLNHIVGEIPKELG-----KLNSLTKLILRGNQRAVTLSF  508 (518)
Q Consensus       452 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~ip~  508 (518)
                      |.+++    .+|..+..+++|++|++++|++.+.....+.     ....|+.|++.++.+....++
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            88875    6677777788888888888887754332222     234677888877777655544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6e-31  Score=256.73  Aligned_cols=289  Identities=19%  Similarity=0.251  Sum_probs=156.9

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      ++++++++++.+. .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+++..|               
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------   93 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---------------   93 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT---------------
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH---------------
Confidence            4555555555554 3343332  345555555555544444444444445555444444444444               


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc--
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG--  313 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--  313 (518)
                               ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  
T Consensus        94 ---------~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A           94 ---------GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             ---------TTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             ---------HHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence                     44444444445555444444 2233222  456666666666665555556666666666666666642  


Q ss_pred             cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558          314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC  393 (518)
Q Consensus       314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  393 (518)
                      ..+..+..+++|++|++++|.+++ +|..+. +                        +|+.|++++|.+.+..+..+..+
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~------------------------~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP-P------------------------SLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-T------------------------TCSEEECTTSCCCEECTGGGTTC
T ss_pred             cChhhccCCCCcCEEECCCCcccc-CCcccc-c------------------------cCCEEECCCCcCCccCHHHhcCC
Confidence            445556666667777766666652 332221 3                        34444444444444444455555


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccC------CCC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN------SSQ  467 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~  467 (518)
                      ++|++|++++|++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|..      .+.
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence            55666666666665555555566666666666666665 45555666666666666666666544444432      356


Q ss_pred             CCEEeCcCCcCcc--cCCccccCCCCCCEEECcCCc
Q 037558          468 LQALDLSLNHIVG--EIPKELGKLNSLTKLILRGNQ  501 (518)
Q Consensus       468 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~  501 (518)
                      |+.|++++|++..  ..|..+..++.++.+++++|+
T Consensus       295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7777777777653  455667777778888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3e-31  Score=258.98  Aligned_cols=288  Identities=20%  Similarity=0.279  Sum_probs=151.8

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      ++++++++++.+. .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4556666655554 4444332  355555555555554444445555555555555555444444444444444444444


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc--c
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK--G  313 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~  313 (518)
                                              +|.++ .+|..+.  ++|++|++++|++.+..+..+..+++|++|++++|.+.  +
T Consensus       111 ------------------------~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A          111 ------------------------KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             ------------------------SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             ------------------------CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence                                    44444 2232222  45555666665555444444555666666666666654  2


Q ss_pred             cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558          314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC  393 (518)
Q Consensus       314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  393 (518)
                      ..+..+..+ +|++|++++|.+++ +|..+. +.|+                        .|++++|.+.+..+..+..+
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~------------------------~L~l~~n~i~~~~~~~l~~l  216 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLN------------------------ELHLDHNKIQAIELEDLLRY  216 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCS------------------------CCBCCSSCCCCCCTTSSTTC
T ss_pred             CCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCC------------------------EEECCCCcCCccCHHHhcCC
Confidence            444455555 66666666666653 332221 2344                        44444444444444444555


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccC------CCC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN------SSQ  467 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~  467 (518)
                      ++|++|++++|++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|..      ...
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred             CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence            55555555555555554555555555666666666555 44555555666666666666665444444432      355


Q ss_pred             CCEEeCcCCcCc--ccCCccccCCCCCCEEECcCCc
Q 037558          468 LQALDLSLNHIV--GEIPKELGKLNSLTKLILRGNQ  501 (518)
Q Consensus       468 L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~  501 (518)
                      |+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            677777777765  5566667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.2e-31  Score=259.96  Aligned_cols=282  Identities=21%  Similarity=0.255  Sum_probs=206.5

Q ss_pred             CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEcc
Q 037558          204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS  283 (518)
Q Consensus       204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  283 (518)
                      +++.++++++.++ .+|..+  .+++++|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4556666666555 344433  2466666666666666555566666677777777776666666666677777777777


Q ss_pred             CCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc
Q 037558          284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP  363 (518)
Q Consensus       284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~  363 (518)
                      +|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.                     .+..+
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~  166 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFEP  166 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSCT
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCCc
Confidence            77666 4444433  567777777777665444456666666666666665542                     11233


Q ss_pred             hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCC
Q 037558          364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK  443 (518)
Q Consensus       364 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  443 (518)
                      ..+..+ +|+.|++++|.+++ +|..+.  ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  242 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT  242 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred             ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence            344444 67777788887774 555443  78999999999999988889999999999999999999888888999999


Q ss_pred             CCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccC------CCCCCEEECcCCccc--cccCccCccCCC
Q 037558          444 LDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK------LNSLTKLILRGNQRA--VTLSFINKVCSS  515 (518)
Q Consensus       444 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~~ip~~l~~l~~  515 (518)
                      |++|++++|++. .+|..+..+++|++|++++|++.+..+..+..      .+.|+.|++++|++.  +..|..+..++.
T Consensus       243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~  321 (332)
T 2ft3_A          243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD  321 (332)
T ss_dssp             CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred             CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence            999999999999 78888999999999999999999877776654      467999999999987  555667777777


Q ss_pred             CC
Q 037558          516 LE  517 (518)
Q Consensus       516 L~  517 (518)
                      |+
T Consensus       322 L~  323 (332)
T 2ft3_A          322 RL  323 (332)
T ss_dssp             ST
T ss_pred             hh
Confidence            65

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.3e-35  Score=301.86  Aligned_cols=355  Identities=20%  Similarity=0.145  Sum_probs=217.2

Q ss_pred             CCCCEEECCCCCCCcCCCcc-CCCCCCCcEEEccCCCCCc----cCCcCCcCCCCCCEEEccCccccccCCcccc-CCC-
Q 037558          131 SHLKFLFIDTNKLDGSIPPE-VGQLSSMEVFFLCSNYLNG----SVPPSLGNLSHISLLFIYDNLFSGFIPSDIG-NSK-  203 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~-  203 (518)
                      ++|++|++++|.++...... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45667777777665332222 4556666777776666653    2344455566666666666665543222221 222 


Q ss_pred             ---CCcEEEcccCcCCC----CcchhccCCCCCcEEEcccCcCCcccccccc-----CCCCCCEeeCcCCCCccCC----
Q 037558          204 ---SIFNLDLSSNQFSG----PIPLFFGNLSNLKSLYLYGNSLSSPILSSLG-----KFKSLIDLQLNENQFTGYI----  267 (518)
Q Consensus       204 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----  267 (518)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               46666666665553    2344555555666666665555432222221     1234555555555544321    


Q ss_pred             cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccC-cCCCCCCeeeccccccccc----CCcc
Q 037558          268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGS----IPPS  342 (518)
Q Consensus       268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~----~p~~  342 (518)
                      +..+..+++|++|++++|.+++..+..+..                    .+ ...++|++|++++|.+++.    ++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            223333445555555555443322222211                    00 0133455555555544431    1222


Q ss_pred             ccc-ccCcEEEccCccCcccC-----chhhcCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccccCh
Q 037558          343 LGN-LILRELLLSGNHFAGYL-----PYNICQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGNISE  412 (518)
Q Consensus       343 ~~~-~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~  412 (518)
                      +.. ++|++|++++|.+.+..     +..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            222 45555666655554332     22233578999999999999864    577778899999999999999866544


Q ss_pred             hhhC-----CCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccCccccccC-----CCCCCEEeCcCCcC
Q 037558          413 ALAI-----YPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIGN-----SSQLQALDLSLNHI  478 (518)
Q Consensus       413 ~l~~-----l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l  478 (518)
                      .+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            4432     37999999999999865    4566778899999999999998655554432     67999999999999


Q ss_pred             cc----cCCccccCCCCCCEEECcCCccccc
Q 037558          479 VG----EIPKELGKLNSLTKLILRGNQRAVT  505 (518)
Q Consensus       479 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~  505 (518)
                      .+    .+|..+..+++|++|++++|++.+.
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            86    7888889999999999999999765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1.5e-30  Score=253.93  Aligned_cols=220  Identities=21%  Similarity=0.317  Sum_probs=130.2

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      +++.++++++.+. .+|..+.  +++++|++++|.+++..+..++++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5777788777664 3454332  567777777777776555567777777777777777776667777777777777777


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc--cccccccCCCCCCEeeCcCCCCcc
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS--PILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      +|.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++.
T Consensus       109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            777663 343332  567777777776665555566666666666666666543  344455555555555555555552


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                       +|..+.  ++|++|++++|++++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence             233222  44555555555554444444555555555555555554443334444444444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=7.1e-33  Score=292.44  Aligned_cols=402  Identities=15%  Similarity=0.068  Sum_probs=264.3

Q ss_pred             cCCCCCCCcEEeCCCCCCc---ccCCcccc------------CCCCCCEEECCCCCCCcCCCccCCC-CCC-CcEEEccC
Q 037558          102 SFSSFPRLAYLDLTGSGLF---GTIPPEVG------------LLSHLKFLFIDTNKLDGSIPPEVGQ-LSS-MEVFFLCS  164 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~---~~~~~~~~------------~l~~L~~L~l~~n~~~~~~p~~l~~-l~~-L~~L~L~~  164 (518)
                      .+..+++|++|+++++...   +.+|..++            .+++|++|++++|.+++..+..+.. +++ |++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            4557788888888775321   22332222            6788888888888777655555554 334 88888888


Q ss_pred             CCC-Cc-cCCcCCcCCCCCCEEEccCcccccc----CCccccCCCCCcEEEcccCcCCC----CcchhccCCCCCcEEEc
Q 037558          165 NYL-NG-SVPPSLGNLSHISLLFIYDNLFSGF----IPSDIGNSKSIFNLDLSSNQFSG----PIPLFFGNLSNLKSLYL  234 (518)
Q Consensus       165 n~~-~~-~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l  234 (518)
                      |.. .. .++....++++|++|++++|.+++.    ++.....+++|++|++++|.+++    .++..+..+++|++|++
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV  227 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence            762 11 1222234678888888888887655    22334567888888888888763    33444567788888888


Q ss_pred             ccCcCCccccccccCCCCCCEeeCcCCCCc---cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558          235 YGNSLSSPILSSLGKFKSLIDLQLNENQFT---GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF  311 (518)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  311 (518)
                      ++|.+.+ ++..+..+++|++|+++.....   ...+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+
T Consensus       228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCC
T ss_pred             cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcC
Confidence            8887776 5677778888888888753322   23334566777888888877533 35666677788888888888886


Q ss_pred             cccCC-ccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccC-----------ccCccc-CchhhcCCCCccEEec
Q 037558          312 KGVLP-PSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSG-----------NHFAGY-LPYNICQGGALEIFTV  377 (518)
Q Consensus       312 ~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~-----------n~~~~~-~~~~~~~~~~L~~L~l  377 (518)
                      .+... ..+..+++|++|+++++...+.++..... ++|++|++++           +.+++. ++.....+++|+.|++
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            54433 23567788888888733222222222222 6788888883           444433 2222445778888888


Q ss_pred             CCCcCccccChhhhc-CCCCcEEEcc----cCccccc-----cChhhhCCCCCCEEecccCc--cccccCccc-cCCCCC
Q 037558          378 SENHFQGTIPTSVRN-CTSLIRVHLN----GNNLTGN-----ISEALAIYPNLTFIDLSRNN--FYGEISSNW-GKCPKL  444 (518)
Q Consensus       378 ~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~L  444 (518)
                      +.+.+++..+..+.. +++|++|+++    .+.+++.     ++..+..+++|+.|+++.|.  +++..+..+ ..+++|
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence            777777766666654 7888888886    5566653     33446668888888887543  554433333 347788


Q ss_pred             CEEEccCCcccc-CccccccCCCCCCEEeCcCCcCcccC-CccccCCCCCCEEECcCCccccc
Q 037558          445 DTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEI-PKELGKLNSLTKLILRGNQRAVT  505 (518)
Q Consensus       445 ~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~  505 (518)
                      ++|++++|++++ .++..+..+++|++|++++|++++.. +..+..+++|++|++++|++.+.
T Consensus       466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            888888888775 34455577888888888888876543 33345688888888888887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=1.8e-32  Score=289.41  Aligned_cols=415  Identities=13%  Similarity=0.062  Sum_probs=306.6

Q ss_pred             CCEEEEEcCCCCCc---cccCCccCC------------CCCCCcEEeCCCCCCcccCCccccC-CC-CCCEEECCCCC-C
Q 037558           82 GRVINISLRNTGLS---GTLHGFSFS------------SFPRLAYLDLTGSGLFGTIPPEVGL-LS-HLKFLFIDTNK-L  143 (518)
Q Consensus        82 ~~v~~l~l~~~~~~---~~~~~~~l~------------~l~~L~~L~L~~~~~~~~~~~~~~~-l~-~L~~L~l~~n~-~  143 (518)
                      .++++++++++...   +.+|. .+.            .+++|++|+|++|.+.+..+..+.. ++ +|++|++++|. +
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPE-NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCT-TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCeEEEecCCcchhhcccccc-cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            46888998775431   22221 222            7899999999999887766666655 34 49999999987 2


Q ss_pred             Cc-CCCccCCCCCCCcEEEccCCCCCcc----CCcCCcCCCCCCEEEccCccccc----cCCccccCCCCCcEEEcccCc
Q 037558          144 DG-SIPPEVGQLSSMEVFFLCSNYLNGS----VPPSLGNLSHISLLFIYDNLFSG----FIPSDIGNSKSIFNLDLSSNQ  214 (518)
Q Consensus       144 ~~-~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~  214 (518)
                      .. .++....++++|++|++++|.+.+.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            21 2233345789999999999988654    33345678999999999999873    344556789999999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcccCcCC---ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC
Q 037558          215 FSGPIPLFFGNLSNLKSLYLYGNSLS---SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI  291 (518)
Q Consensus       215 ~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  291 (518)
                      +.+ ++..+..+++|++|+++.....   ...+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++..
T Consensus       232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            885 6788899999999999864332   23446678889999999988643 357777888999999999999876543


Q ss_pred             c-cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccc-----------ccccccCCcc-cc-cccCcEEEccCcc
Q 037558          292 P-DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY-----------NHLSGSIPPS-LG-NLILRELLLSGNH  357 (518)
Q Consensus       292 p-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~p~~-~~-~~~L~~L~l~~n~  357 (518)
                      . ..+..+++|++|+++++...+.++.....+++|++|++++           +.+++..... .. .++|++|+++.|.
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence            3 3467899999999994433333344456789999999994           4554322222 12 2789999999899


Q ss_pred             CcccCchhhcC-CCCccEEecC----CCcCccc-----cChhhhcCCCCcEEEcccCc--cccccChhhh-CCCCCCEEe
Q 037558          358 FAGYLPYNICQ-GGALEIFTVS----ENHFQGT-----IPTSVRNCTSLIRVHLNGNN--LTGNISEALA-IYPNLTFID  424 (518)
Q Consensus       358 ~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~  424 (518)
                      +++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++|+++.|.  +++.....+. .+++|++|+
T Consensus       390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence            98877766665 8899999996    5677653     34446779999999998654  6665555554 489999999


Q ss_pred             cccCccccc-cCccccCCCCCCEEEccCCccccC-ccccccCCCCCCEEeCcCCcCcccCCcccc-CCCCCCEEECcC
Q 037558          425 LSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGG-IPREIGNSSQLQALDLSLNHIVGEIPKELG-KLNSLTKLILRG  499 (518)
Q Consensus       425 L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~  499 (518)
                      +++|++++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.....+. .++.+....+..
T Consensus       470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            999999864 455567899999999999998754 444456789999999999999876555453 567776554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.7e-29  Score=242.35  Aligned_cols=254  Identities=21%  Similarity=0.240  Sum_probs=196.6

Q ss_pred             CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCc--C
Q 037558           69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG--S  146 (518)
Q Consensus        69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~  146 (518)
                      ..|.|.++.|...+           +. .+|. .  -.+++++|++++|.+....+..+..+++|++|++++|.++.  .
T Consensus         5 C~C~~~~l~c~~~~-----------l~-~ip~-~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   69 (306)
T 2z66_A            5 CSCSGTEIRCNSKG-----------LT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC   69 (306)
T ss_dssp             CEEETTEEECCSSC-----------CS-SCCS-C--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred             CeeCCCEEEcCCCC-----------cc-cCCC-C--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence            34788888886422           22 2222 1  23688999999998875444557888999999999988873  2


Q ss_pred             CCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhccC
Q 037558          147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIP-SDIGNSKSIFNLDLSSNQFSGPIPLFFGN  225 (518)
Q Consensus       147 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  225 (518)
                      .|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus        70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            3566667888999999988887 566778888889999998888876654 56788888888888888888777777888


Q ss_pred             CCCCcEEEcccCcCCc-cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEE
Q 037558          226 LSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL  304 (518)
Q Consensus       226 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  304 (518)
                      +++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            8888888888888876 567778888888888888888887777778888888888888888876666677778888888


Q ss_pred             EccCCcccccCCccCcCCC-CCCeeeccccccccc
Q 037558          305 DLNENQFKGVLPPSISNLT-NLKELALLYNHLSGS  338 (518)
Q Consensus       305 ~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~  338 (518)
                      ++++|.+.+..+..+..++ +|++|++++|.+++.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            8888888877777777774 788888888877654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=6.8e-29  Score=241.37  Aligned_cols=235  Identities=23%  Similarity=0.260  Sum_probs=191.4

Q ss_pred             CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      ..+++++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3467777777777775 56666777777777777777777 67777777777777777777776 666667777777777


Q ss_pred             EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      ++++|.+.+.+|..+..      .         ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            77776666665554332      0         11223566999999999999998 58888999999999999999999


Q ss_pred             cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc
Q 037558          265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG  344 (518)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~  344 (518)
                      + +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            5 666799999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             c-ccCcEEEccCccCc
Q 037558          345 N-LILRELLLSGNHFA  359 (518)
Q Consensus       345 ~-~~L~~L~l~~n~~~  359 (518)
                      . ++++.+++..+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            7 88999999877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8e-29  Score=238.99  Aligned_cols=282  Identities=20%  Similarity=0.203  Sum_probs=177.2

Q ss_pred             cEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC--CcccccCCCCCcEEEcc
Q 037558          206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY--IPRSFGNLTSLSTLRLS  283 (518)
Q Consensus       206 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~  283 (518)
                      +.++.+++.++ .+|..+  .++|++|++++|.++...+..+.++++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            35566666655 344332  24566666666666654444456666666666666665522  23444455666666666


Q ss_pred             CCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccC
Q 037558          284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYL  362 (518)
Q Consensus       284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  362 (518)
                      +|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+++                       +|.+.+..
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-----------------------~n~l~~~~  142 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-----------------------HTHTRVAF  142 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-----------------------TSCCEECS
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-----------------------CCcCCccc
Confidence            66554 344445555566666666555553322 234444455544444                       44444444


Q ss_pred             chhhcCCCCccEEecCCCcCcc-ccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCC
Q 037558          363 PYNICQGGALEIFTVSENHFQG-TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC  441 (518)
Q Consensus       363 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  441 (518)
                      +..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            5555566677777777777665 466677777888888888888887777777788888888888888876666667778


Q ss_pred             CCCCEEEccCCccccCccccccCCC-CCCEEeCcCCcCcccCC--ccccCCCCCCEEECcCCccccccCccCccCC
Q 037558          442 PKLDTLNVSMNNITGGIPREIGNSS-QLQALDLSLNHIVGEIP--KELGKLNSLTKLILRGNQRAVTLSFINKVCS  514 (518)
Q Consensus       442 ~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~  514 (518)
                      ++|++|++++|++.+..|..+..++ +|++|++++|++.+.-.  .....+...+.+.+..+.+.+..|..+.+.+
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            8888888888888877777777774 78888888888765321  1122233444556677778888887776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=242.17  Aligned_cols=279  Identities=19%  Similarity=0.211  Sum_probs=135.1

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      .....+++++.+. .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus        32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            3334555555543 2333322  355555555555553333345555555555555555544444444445555555555


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccc-ccccCCCCCCEeeCcCC-CCcc
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL-SSLGKFKSLIDLQLNEN-QFTG  265 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~~~~  265 (518)
                      +|.+++..                        +..++.+++|++|++++|.+++... ..+..+++|++|++++| .+.+
T Consensus       109 ~n~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          109 YNYLSNLS------------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             SSCCSSCC------------------------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CCcCCcCC------------------------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence            55444333                        3334444455555555444443222 24444555555555554 2333


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc-
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG-  344 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-  344 (518)
                      ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+. 
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  244 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST  244 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence            3344455555555555555555555555555555666666666555422212233355566666665555543222111 


Q ss_pred             ---cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558          345 ---NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT  421 (518)
Q Consensus       345 ---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  421 (518)
                         ...++.++++++.+.+.                   .+. .+|..+..+++|++|++++|+++...+..+..+++|+
T Consensus       245 ~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~  304 (353)
T 2z80_A          245 GETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ  304 (353)
T ss_dssp             --CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence               12334444444333221                   111 2445556666666666666666643333346666666


Q ss_pred             EEecccCccccc
Q 037558          422 FIDLSRNNFYGE  433 (518)
Q Consensus       422 ~L~L~~n~l~~~  433 (518)
                      +|++++|++.+.
T Consensus       305 ~L~L~~N~~~~~  316 (353)
T 2z80_A          305 KIWLHTNPWDCS  316 (353)
T ss_dssp             EEECCSSCBCCC
T ss_pred             EEEeeCCCccCc
Confidence            666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=242.41  Aligned_cols=279  Identities=21%  Similarity=0.195  Sum_probs=166.3

Q ss_pred             CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEE
Q 037558          201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL  280 (518)
Q Consensus       201 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  280 (518)
                      .++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3455556777777777 4555443  478888888888877666677788888888888888877666777778888888


Q ss_pred             EccCCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCCeeeccccc-ccccCCccccc-ccCcEEEccCcc
Q 037558          281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLKELALLYNH-LSGSIPPSLGN-LILRELLLSGNH  357 (518)
Q Consensus       281 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~-~~L~~L~l~~n~  357 (518)
                      ++++|++++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+.. ++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888887775444557777888888888887774332 356677777777777763 44333333332 445555555555


Q ss_pred             CcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558          358 FAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN  437 (518)
Q Consensus       358 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  437 (518)
                      +.+..|..+..+++|+.|                        ++++|+++......+..+++|++|++++|.+.+..+..
T Consensus       186 l~~~~~~~l~~l~~L~~L------------------------~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHL------------------------ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             CCEECTTTTTTCSEEEEE------------------------EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             cCccCHHHHhccccCCee------------------------cCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence            554444444444444444                        44444444333233333445555555555544332221


Q ss_pred             c---cCCCCCCEEEccCCcccc----CccccccCCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEECcCCccccccC
Q 037558          438 W---GKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       438 ~---~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      +   ...+.++.++++++.+.+    .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|++.+..|
T Consensus       242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            1   224455555665555543    34555566666666666666665 33433 3566666666666666665544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4e-28  Score=231.54  Aligned_cols=224  Identities=23%  Similarity=0.258  Sum_probs=153.7

Q ss_pred             EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558           85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS  164 (518)
Q Consensus        85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~  164 (518)
                      +.++.++.++.. +|.   .-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            455556555543 222   2346788888888888776667788888888888888888766677788888888888888


Q ss_pred             CC-CCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccc
Q 037558          165 NY-LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI  243 (518)
Q Consensus       165 n~-~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  243 (518)
                      |. +....|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            86 65555667777778888888877777766777777777777777777777655555666777777777777666655


Q ss_pred             cccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            555666666666666666666555566666666666666666666544445555666666666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.1e-27  Score=228.53  Aligned_cols=256  Identities=20%  Similarity=0.236  Sum_probs=202.4

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      ++++.+++.+. .+|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56788777774 345433  468899999999888766677888899999999999888777888888899999999988


Q ss_pred             c-ccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCc
Q 037558          190 L-FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP  268 (518)
Q Consensus       190 ~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  268 (518)
                      . +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 776667888888999999999998887778888888899999999998888667778888889999999988887666


Q ss_pred             ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccC
Q 037558          269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL  348 (518)
Q Consensus       269 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L  348 (518)
                      ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+.......+
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            66888889999999999888877888888889999999999888766566888889999999998887544432222334


Q ss_pred             cEEEccCccCcccCchhhcC
Q 037558          349 RELLLSGNHFAGYLPYNICQ  368 (518)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~  368 (518)
                      +.+..+.+.+....|..+.+
T Consensus       251 ~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          251 QKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             HHCCSEECCCBEEESGGGTT
T ss_pred             HhcccccCccccCCchHhCC
Confidence            45556666666666665543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.9e-27  Score=238.45  Aligned_cols=228  Identities=22%  Similarity=0.242  Sum_probs=198.0

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      +++++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            68999999999998888889999999999999999999878888999999999999999998666667889999999999


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      ++|.+....+..+.++++|++|++++|. +....+..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence            9999998777788999999999999854 4433344688899999999999998863  357888899999999999988


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      ..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            88888999999999999999998888888888999999999999998766677888889999999988765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=235.91  Aligned_cols=228  Identities=21%  Similarity=0.215  Sum_probs=193.9

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      ++++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            68899999999998888888999999999999999998777788999999999999999998666667889999999999


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      ++|.+....+..+.++++|++|++++|. +....+..+..+++|++|++++|.++. +| .+..+++|++|++++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence            9999988777788899999999999854 443344468889999999999998875 33 47788889999999998888


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      ..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77888888889999999999888887888888889999999999888766667788888888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.1e-26  Score=236.55  Aligned_cols=229  Identities=18%  Similarity=0.152  Sum_probs=207.7

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.++++++.+.+..+. .|.++++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            4789999999999987666 899999999999999999988889999999999999999999966667799999999999


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCc-cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS  240 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  240 (518)
                      +++|.+....+..+.++++|++|++++| .+....+..+.++++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence            9999999766678999999999999995 45545555789999999999999999854 4 4788999999999999999


Q ss_pred             ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558          241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG  313 (518)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  313 (518)
                      +..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9889999999999999999999999888899999999999999999997777778899999999999998874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.8e-26  Score=232.60  Aligned_cols=247  Identities=19%  Similarity=0.184  Sum_probs=179.1

Q ss_pred             CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558          228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN  307 (518)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  307 (518)
                      ..+.++..+..++. +|..+.  ++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            35677777777765 555444  578888888888887777788888888888888888887777788888888888888


Q ss_pred             CCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccC-chhhcCCCCccEEecCCCcCccc
Q 037558          308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYL-PYNICQGGALEIFTVSENHFQGT  385 (518)
Q Consensus       308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~  385 (518)
                      +|.+++..+..+..+++|++|++++|.+.+..+..+.. ++|+.|++++|...+.+ +..+..+++|+.|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            88888665567888888888888888887555544544 67778888775444333 335666777777777777776 3


Q ss_pred             cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCC
Q 037558          386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNS  465 (518)
Q Consensus       386 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  465 (518)
                      +| .+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            44 35666777777777777776667777777777777777777776666667777777777777777775555566677


Q ss_pred             CCCCEEeCcCCcCc
Q 037558          466 SQLQALDLSLNHIV  479 (518)
Q Consensus       466 ~~L~~L~L~~n~l~  479 (518)
                      ++|+.|+|++|++.
T Consensus       279 ~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEcCCCCcc
Confidence            77777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.9e-29  Score=240.96  Aligned_cols=222  Identities=22%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             CcEEeCCCCCC-cccCCcccc-------CCCCCCEEECCCCCCCcCCCccC--CCCCCCcEEEccCCCCCccCCcCCcCC
Q 037558          109 LAYLDLTGSGL-FGTIPPEVG-------LLSHLKFLFIDTNKLDGSIPPEV--GQLSSMEVFFLCSNYLNGSVPPSLGNL  178 (518)
Q Consensus       109 L~~L~L~~~~~-~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p~~l~~l  178 (518)
                      |++|++++|.+ ...++..+.       .+++|++|++++|.+++.+|..+  +.+++|++|++++|.+.+. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            55555555544 223343333       45555555555555554455443  4555555555555555433 4444433


Q ss_pred             -----CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhc--cCCCCCcEEEcccCcCCc--ccc-cc
Q 037558          179 -----SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP--IPLFF--GNLSNLKSLYLYGNSLSS--PIL-SS  246 (518)
Q Consensus       179 -----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~  246 (518)
                           ++|++|++++|++.+..+..++.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++  ..+ ..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 4555555555555544444555555555555555544332  12222  444555555555554442  111 22


Q ss_pred             ccCCCCCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCC
Q 037558          247 LGKFKSLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL  325 (518)
Q Consensus       247 l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  325 (518)
                      +..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence            2334444455554444444332 22333444444444444444 3343332  4444444444444432 32 4444444


Q ss_pred             Ceeeccccccc
Q 037558          326 KELALLYNHLS  336 (518)
Q Consensus       326 ~~L~l~~n~l~  336 (518)
                      ++|++++|.++
T Consensus       299 ~~L~L~~N~l~  309 (312)
T 1wwl_A          299 GNLSLKGNPFL  309 (312)
T ss_dssp             EEEECTTCTTT
T ss_pred             CEEeccCCCCC
Confidence            44444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=4.2e-26  Score=215.62  Aligned_cols=215  Identities=21%  Similarity=0.291  Sum_probs=131.8

Q ss_pred             CCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC
Q 037558           68 ISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI  147 (518)
Q Consensus        68 ~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  147 (518)
                      .++|.|.|+.|...+..+.++++++++.. +|. .+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            58999999999766667788888887764 443 222  56777888877776655566777777777777777777433


Q ss_pred             CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558          148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS  227 (518)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  227 (518)
                      +..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            44456777777777777777654445566666677777666666665555566666666666666666544444455555


Q ss_pred             CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558          228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE  286 (518)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  286 (518)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            55555555555554444444444444444444444443333333344444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.4e-28  Score=235.02  Aligned_cols=244  Identities=22%  Similarity=0.256  Sum_probs=170.6

Q ss_pred             CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc-ccCccccC-------CCCCccEEEccCCcccccCCccC--c
Q 037558          251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF-GSIPDEIG-------KMRSLSVLDLNENQFKGVLPPSI--S  320 (518)
Q Consensus       251 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~l--~  320 (518)
                      ++|+.|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       .+++|++|++++|.+.+.+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3455555555555  334433322  555555555552 23333333       45566666666666665555544  5


Q ss_pred             CCCCCCeeecccccccccCCccccc------ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc--cChhh--
Q 037558          321 NLTNLKELALLYNHLSGSIPPSLGN------LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT--IPTSV--  390 (518)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~p~~~~~------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~--  390 (518)
                      .+++|++|++++|.+++. |..+..      ++|++|++++|.+.+..+..+..+++|+.|++++|++.+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            566666666666666544 433321      5677777777777777777778888888888888887654  23334  


Q ss_pred             hcCCCCcEEEcccCcccc---ccChhhhCCCCCCEEecccCccccccC-ccccCCCCCCEEEccCCccccCccccccCCC
Q 037558          391 RNCTSLIRVHLNGNNLTG---NISEALAIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLDTLNVSMNNITGGIPREIGNSS  466 (518)
Q Consensus       391 ~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  466 (518)
                      ..+++|++|++++|++++   .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+++ .+|..+.  +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence            788999999999999983   223455688999999999999988764 45667899999999999998 7787776  8


Q ss_pred             CCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558          467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       467 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  504 (518)
                      +|++|++++|++.+. |. +..+++|++|++++|++.+
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999999999999866 65 8899999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.4e-30  Score=275.05  Aligned_cols=131  Identities=14%  Similarity=0.100  Sum_probs=55.6

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCC-CCCCCcEEEccCC-CCCcc-CCcCCcCCCCCCEEEccCccccccCCccc----cC
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVG-QLSSMEVFFLCSN-YLNGS-VPPSLGNLSHISLLFIYDNLFSGFIPSDI----GN  201 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~L~~n-~~~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~  201 (518)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            344555555555554443333332 3455555555555 22211 22222344555555555555443322222    23


Q ss_pred             CCCCcEEEcccCc--CCC-CcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558          202 SKSIFNLDLSSNQ--FSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN  259 (518)
Q Consensus       202 ~~~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  259 (518)
                      +++|++|++++|.  +.. .+...+..+++|++|++++|...+.++..+..+++|++|+++
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            4455555555554  110 011112234555555555542111134444444555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=8e-28  Score=232.98  Aligned_cols=266  Identities=17%  Similarity=0.179  Sum_probs=207.5

Q ss_pred             CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccC
Q 037558          229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE  308 (518)
Q Consensus       229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  308 (518)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455666666665555556667789999999999998777888999999999999999886554  78899999999999


Q ss_pred             CcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh
Q 037558          309 NQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT  388 (518)
Q Consensus       309 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  388 (518)
                      |.+++..     ..++|++|++++|.+++..+..  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            9988432     3488999999999888654443  35688899998888887777788888888888888888876666


Q ss_pred             hhh-cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCC
Q 037558          389 SVR-NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ  467 (518)
Q Consensus       389 ~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  467 (518)
                      .+. .+++|++|++++|++++...  ...+++|++|++++|++.+. |..+..+++|++|++++|++. .+|..+..+++
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~  238 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN  238 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred             HHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence            653 67888888888888886532  33478888888888888854 444778888888888888888 57777888888


Q ss_pred             CCEEeCcCCcCc-ccCCccccCCCCCCEEECcCCc-cccccC
Q 037558          468 LQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQ-RAVTLS  507 (518)
Q Consensus       468 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~ip  507 (518)
                      |+.|++++|++. +.++..+..++.|+.+++++|+ +.|..|
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            888888888887 6777788888888888887443 444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-28  Score=236.32  Aligned_cols=266  Identities=18%  Similarity=0.151  Sum_probs=217.3

Q ss_pred             CcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccC
Q 037558          205 IFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSK  284 (518)
Q Consensus       205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  284 (518)
                      ++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455666666665555566778899999999999999878889999999999999999986554  88899999999999


Q ss_pred             CcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCc
Q 037558          285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLP  363 (518)
Q Consensus       285 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~  363 (518)
                      |.+++. +    ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+.. +.|++|++++|.+.+..+
T Consensus        90 n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Cccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            998743 2    348999999999999865443   3678999999999998766656655 889999999999998777


Q ss_pred             hhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCC
Q 037558          364 YNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP  442 (518)
Q Consensus       364 ~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  442 (518)
                      ..+. .+++|+.|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++|+.|++++|++. .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            6664 678999999999998855 32 3358999999999999996544 5888999999999999998 4677788899


Q ss_pred             CCCEEEccCCccc-cCccccccCCCCCCEEeCcCC-cCcccCCc
Q 037558          443 KLDTLNVSMNNIT-GGIPREIGNSSQLQALDLSLN-HIVGEIPK  484 (518)
Q Consensus       443 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  484 (518)
                      +|+.|++++|++. +.++.++..+++|+.|+++++ .+.+..|.
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9999999999998 678888899999999999866 45554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.4e-30  Score=271.17  Aligned_cols=417  Identities=15%  Similarity=0.109  Sum_probs=284.4

Q ss_pred             CCEEEEEcCCCCCccccC---C-----------ccCCCCCCCcEEeCCCCCCcccCCcccc-CCCCCCEEECCCC-CCCc
Q 037558           82 GRVINISLRNTGLSGTLH---G-----------FSFSSFPRLAYLDLTGSGLFGTIPPEVG-LLSHLKFLFIDTN-KLDG  145 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~---~-----------~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~  145 (518)
                      .+++.++++++.....+.   .           .....+++|++|++++|.+.+..+..+. .+++|++|++++| .++.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            567888888765332221   0           0124688999999999988777666665 6899999999999 4543


Q ss_pred             C-CCccCCCCCCCcEEEccCCCCCccCCcC----CcCCCCCCEEEccCcc--cccc-CCccccCCCCCcEEEcccCcCCC
Q 037558          146 S-IPPEVGQLSSMEVFFLCSNYLNGSVPPS----LGNLSHISLLFIYDNL--FSGF-IPSDIGNSKSIFNLDLSSNQFSG  217 (518)
Q Consensus       146 ~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~~~~  217 (518)
                      . ++..+.++++|++|++++|.+.+..+..    ...+++|++|++++|.  +... ++..+.++++|++|++++|...+
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence            2 4444568999999999999876544333    3467899999999986  2211 12223457999999999984333


Q ss_pred             CcchhccCCCCCcEEEcccCc-------CCccccccccCCCCCCEe-eCcCCCCccCCcccccCCCCCcEEEccCCcCcc
Q 037558          218 PIPLFFGNLSNLKSLYLYGNS-------LSSPILSSLGKFKSLIDL-QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG  289 (518)
Q Consensus       218 ~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  289 (518)
                      .++..+..+++|++|++..+.       +.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++
T Consensus       226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCH
Confidence            477778889999999976553       223 34467888899988 3433222 2445555577899999999998764


Q ss_pred             cCc-cccCCCCCccEEEccCCccccc-CCccCcCCCCCCeeeccc---------ccccccCCcccc--cccCcEEEccCc
Q 037558          290 SIP-DEIGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLY---------NHLSGSIPPSLG--NLILRELLLSGN  356 (518)
Q Consensus       290 ~~p-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~p~~~~--~~~L~~L~l~~n  356 (518)
                      ... ..+..+++|++|++++| +... ++.....+++|++|++.+         +.+++.....+.  .++|+.|++..|
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~  382 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR  382 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence            332 33567899999999988 4322 222334578899998844         333322211121  267889988888


Q ss_pred             cCcccCchhhc-CCCCccEEecC--C----CcCcc-----ccChhhhcCCCCcEEEcccCccccccChhhhC-CCCCCEE
Q 037558          357 HFAGYLPYNIC-QGGALEIFTVS--E----NHFQG-----TIPTSVRNCTSLIRVHLNGNNLTGNISEALAI-YPNLTFI  423 (518)
Q Consensus       357 ~~~~~~~~~~~-~~~~L~~L~l~--~----n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L  423 (518)
                      .+++.....+. .+++|+.|+++  +    +.+++     .++..+..+++|++|++++ .+++.....+.. +++|+.|
T Consensus       383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred             CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence            88766555554 47889999988  3    34442     1222356788999999977 677665555555 8889999


Q ss_pred             ecccCccccccCccc-cCCCCCCEEEccCCccccCccc-cccCCCCCCEEeCcCCcCcccCCccc-cCCCCCCEEECcCC
Q 037558          424 DLSRNNFYGEISSNW-GKCPKLDTLNVSMNNITGGIPR-EIGNSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGN  500 (518)
Q Consensus       424 ~L~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n  500 (518)
                      ++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+
T Consensus       462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            999998876544444 6688999999999998654333 34567899999999998865544445 45788877666655


Q ss_pred             cc
Q 037558          501 QR  502 (518)
Q Consensus       501 ~~  502 (518)
                      ..
T Consensus       542 ~~  543 (594)
T 2p1m_B          542 GA  543 (594)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.5e-25  Score=232.47  Aligned_cols=266  Identities=23%  Similarity=0.298  Sum_probs=179.7

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558          180 HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN  259 (518)
Q Consensus       180 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  259 (518)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            5888999999887 5566554  78899999999887 4454   56888888888888876 444   56788888888


Q ss_pred             CCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccC
Q 037558          260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI  339 (518)
Q Consensus       260 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  339 (518)
                      +|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|.+.+ +|.   .+++|+.|++++|.+++ +
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            888875 343   56778888888888774 5543   4788888888888874 343   34677888888887774 4


Q ss_pred             CcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCC
Q 037558          340 PPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN  419 (518)
Q Consensus       340 p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  419 (518)
                      |  ...++|+.|++++|.+.+. |.   ..++|+.|++++|.+. .+|.   .+++|++|++++|++++ +|   ..+++
T Consensus       177 ~--~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~  242 (622)
T 3g06_A          177 P--MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSE  242 (622)
T ss_dssp             C--CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred             c--ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence            4  2235677777777776652 22   1356777777777666 3333   23566777777776664 33   34466


Q ss_pred             CCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccC
Q 037558          420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK  488 (518)
Q Consensus       420 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  488 (518)
                      |+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|+|++|++.+..|..+..
T Consensus       243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            677777777666 3333   4566667777777666 55666666667777777777666666655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.3e-24  Score=227.19  Aligned_cols=195  Identities=28%  Similarity=0.353  Sum_probs=125.0

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      .++++|++++|.+. .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.+. .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            36889999999886 6676554  78999999999988 5666   5688999999998887 4555   5678888888


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY  266 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  266 (518)
                      ++|.+++. |.   .+++|++|++++|.++. +|..   +++|++|++++|.+++ +|.   ...+|+.|++++|.+++ 
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            88887753 32   45677788888777764 3432   3667777777776665 222   23456666666666653 


Q ss_pred             CcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       267 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.+. .+|.   .+++|+.|++++|.++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT  234 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC
Confidence            33   234556666666666552 3321   345556666665555 2332   1244555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.3e-26  Score=237.41  Aligned_cols=236  Identities=17%  Similarity=0.205  Sum_probs=156.4

Q ss_pred             CCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeee
Q 037558          250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA  329 (518)
Q Consensus       250 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  329 (518)
                      +++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..     ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            3478888888888877767777788888888888888775554  677788888888888777432     236777777


Q ss_pred             cccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhh-cCCCCcEEEcccCcccc
Q 037558          330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR-NCTSLIRVHLNGNNLTG  408 (518)
Q Consensus       330 l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~  408 (518)
                      +++|.+++..+..  .+.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|+|++|.+++
T Consensus       106 L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            7777776544432  25567777777777766666666666777777777766666665554 56667777777776665


Q ss_pred             ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc-ccCCcccc
Q 037558          409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV-GEIPKELG  487 (518)
Q Consensus       409 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~  487 (518)
                      ..+  ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            532  2246666677776666664333 35666666666666666663 5555666666666666666665 45555566


Q ss_pred             CCCCCCEEECc
Q 037558          488 KLNSLTKLILR  498 (518)
Q Consensus       488 ~l~~L~~L~l~  498 (518)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            66666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.4e-27  Score=238.40  Aligned_cols=235  Identities=20%  Similarity=0.161  Sum_probs=172.2

Q ss_pred             CCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558          226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD  305 (518)
Q Consensus       226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  305 (518)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++. |    ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            3478888888888887777778888888888888888776544  77788888888888877643 2    227788888


Q ss_pred             ccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhc-CCCCccEEecCCCcCc
Q 037558          306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQ  383 (518)
Q Consensus       306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~  383 (518)
                      +++|.+.+..+.   .+++|+.|++++|.+++..|..+.. +.|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888887755433   3567888888888887766665554 7788888888888877776665 6778888888888877


Q ss_pred             cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccc-cCccccc
Q 037558          384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT-GGIPREI  462 (518)
Q Consensus       384 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~  462 (518)
                      +..+  ...+++|++|++++|.+++.++ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            5522  3357788888888888876544 47777888888888888874 5666777788888888888877 5666777


Q ss_pred             cCCCCCCEEeCc
Q 037558          463 GNSSQLQALDLS  474 (518)
Q Consensus       463 ~~l~~L~~L~L~  474 (518)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            777777777775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.3e-24  Score=201.43  Aligned_cols=205  Identities=21%  Similarity=0.233  Sum_probs=132.8

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888888888887766667788888888888888887666667777888888888888877666677777778888888


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCC-cchhccCCCCCcEEEcccCcCCccccccccCCCCCC----EeeCcCC
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP-IPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI----DLQLNEN  261 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n  261 (518)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+++    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            77777766665677777777777777777653 466666667777777777766665555554444444    4555555


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      .+.+..+..+ ...+|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus       188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            5553332222 2234555555555554333333444555555555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=9.1e-24  Score=200.34  Aligned_cols=151  Identities=22%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             EECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcC
Q 037558          136 LFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF  215 (518)
Q Consensus       136 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (518)
                      .+..+..+. .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444444 4555443  4566666666666655444666666666666666666655555566666666666666666


Q ss_pred             CCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC-CcccccCCCCCcEEEccCCcCcc
Q 037558          216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNELFG  289 (518)
Q Consensus       216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~  289 (518)
                      ++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            554445555555555555555555544333444444555555555444431 24444444444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.2e-23  Score=194.34  Aligned_cols=201  Identities=25%  Similarity=0.329  Sum_probs=97.5

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      ..+.++++++.+.. +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+....+..+.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45566666665542 443332  456666666666654444455556666666666665553333334555555555555


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI  267 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (518)
                      +|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            55555444444455555555555555555444444444555555555555444433333444444444444444444333


Q ss_pred             cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558          268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF  311 (518)
Q Consensus       268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  311 (518)
                      +..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            33344444444444444444432222333344444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1e-23  Score=199.42  Aligned_cols=206  Identities=21%  Similarity=0.317  Sum_probs=103.6

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..+++|++|++++|.+.. + ..+..+++|++|++++|.+++ + ..++++++|++|++++|.+.+..+..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            345555555555555432 1 234555555555555555543 1 24455555555555555555444444455555555


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |++++|++.+..+..+..+++|++|++++|.++                        +..+..+..+++|+.|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------------------------SLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccC------------------------ccCHHHhccCccCCEEECCCCCc
Confidence            555555554444444444444555555444444                        43333344444555555555555


Q ss_pred             ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558          264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL  343 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~  343 (518)
                      ++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.       +++|+.+++..|.++|.+|..+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence            444444444555555555555555544444455555555555555554422       3445555555666665555544


Q ss_pred             c
Q 037558          344 G  344 (518)
Q Consensus       344 ~  344 (518)
                      +
T Consensus       243 ~  243 (272)
T 3rfs_A          243 G  243 (272)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.4e-23  Score=196.90  Aligned_cols=209  Identities=26%  Similarity=0.263  Sum_probs=162.6

Q ss_pred             CCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEE
Q 037558          153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL  232 (518)
Q Consensus       153 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  232 (518)
                      .+++|++|++++|.+.. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34444555555444431 1 2345555666666666655542  356667777777777777776666667778888888


Q ss_pred             EcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            88888888767777888999999999999999877777889999999999999999777777889999999999999999


Q ss_pred             ccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCC
Q 037558          313 GVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGA  371 (518)
Q Consensus       313 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  371 (518)
                      +..+..+..+++|+.|++++|.+.+..|      .++.+++..|.+.|.+|..++.+..
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHhCCCcccCcccccCC
Confidence            8877788999999999999999886554      5788889999999999988776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.3e-22  Score=193.46  Aligned_cols=202  Identities=22%  Similarity=0.220  Sum_probs=103.7

Q ss_pred             CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558          103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS  182 (518)
Q Consensus       103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  182 (518)
                      +.+++++++++++++.+. .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+.+. +.. ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence            445566666666666654 3343332  4566666666666555555566666666666666665532 221 4555555


Q ss_pred             EEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558          183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ  262 (518)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  262 (518)
                      +|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            5555555554 334445555555555555555554444445555555555555555554444444444555555555555


Q ss_pred             CccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558          263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF  311 (518)
Q Consensus       263 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  311 (518)
                      +++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            44333333344444555555544444 3444444444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.4e-25  Score=219.35  Aligned_cols=265  Identities=17%  Similarity=0.216  Sum_probs=164.9

Q ss_pred             CCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCC--CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcC-
Q 037558           70 PCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSF--PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGS-  146 (518)
Q Consensus        70 ~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-  146 (518)
                      |.+|.++.|+ ...++.++++++.+...    .+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. 
T Consensus        36 c~~W~~~~~~-~~~~~~l~l~~~~~~~~----~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           36 CKRWYRLASD-ESLWQTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             CHHHHHHHTC-STTSSEEECTTCBCCHH----HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHhcC-chhheeeccccccCCHH----HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence            3469888775 34567788887766521    34445  6788888888877666554 55678888888888877654 


Q ss_pred             CCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc-ccccc-CCccccCCCCCcEEEcccC-cCCCC-cchh
Q 037558          147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGF-IPSDIGNSKSIFNLDLSSN-QFSGP-IPLF  222 (518)
Q Consensus       147 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~  222 (518)
                      +|..+.++++|++|++++|.+.+..+..+.++++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            6666777778888888877777666666777777777777777 45542 4555666777777777777 66643 4555


Q ss_pred             ccCCC-CCcEEEcccC--cCC-ccccccccCCCCCCEeeCcCCC-CccCCcccccCCCCCcEEEccCCc-CcccCccccC
Q 037558          223 FGNLS-NLKSLYLYGN--SLS-SPILSSLGKFKSLIDLQLNENQ-FTGYIPRSFGNLTSLSTLRLSKNE-LFGSIPDEIG  296 (518)
Q Consensus       223 l~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~  296 (518)
                      +..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence            66666 7777777776  343 3344555566667777776666 554555556666666666666663 2211112355


Q ss_pred             CCCCccEEEccCCcccccCCccCcCC-CCCCeeecccccccccCCcccc
Q 037558          297 KMRSLSVLDLNENQFKGVLPPSISNL-TNLKELALLYNHLSGSIPPSLG  344 (518)
Q Consensus       297 ~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~  344 (518)
                      .+++|++|++++| +...   .+..+ .+++.|+++.|.+++..|..+.
T Consensus       270 ~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             cCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence            5666666666666 3221   11122 2244445555655555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.5e-22  Score=191.42  Aligned_cols=202  Identities=23%  Similarity=0.237  Sum_probs=103.8

Q ss_pred             ccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc
Q 037558          127 VGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF  206 (518)
Q Consensus       127 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  206 (518)
                      +..++++++++++++.++ .+|..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            344555555555555554 3444432  355555555555554444455555555555555555544322  14455555


Q ss_pred             EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558          207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE  286 (518)
Q Consensus       207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  286 (518)
                      +|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            5555555554 344444555555555555555555444455555555555555555554444444455555555555555


Q ss_pred             CcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccc
Q 037558          287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL  335 (518)
Q Consensus       287 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  335 (518)
                      +++..+..+..+++|++|++++|.++ .+|..+...++|+.+++++|.+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            55333333444555555555555555 3444444445555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.3e-24  Score=212.74  Aligned_cols=255  Identities=20%  Similarity=0.182  Sum_probs=141.7

Q ss_pred             EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccc----ccccCCC-CCCEeeCcCCCCccCCcccccCC-----CC
Q 037558          207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL----SSLGKFK-SLIDLQLNENQFTGYIPRSFGNL-----TS  276 (518)
Q Consensus       207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~  276 (518)
                      +++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677888887777777776778888888888877555    5666776 78888888888776666555553     77


Q ss_pred             CcEEEccCCcCcccCccccC----CC-CCccEEEccCCcccccCCccC----cC-CCCCCeeecccccccccCCccc---
Q 037558          277 LSTLRLSKNELFGSIPDEIG----KM-RSLSVLDLNENQFKGVLPPSI----SN-LTNLKELALLYNHLSGSIPPSL---  343 (518)
Q Consensus       277 L~~L~l~~n~l~~~~p~~~~----~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~p~~~---  343 (518)
                      |++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+..+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            77888887777765554333    33 677777777777765544332    22 2466777777666653222211   


Q ss_pred             -cc--ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC-CCCcEEEcccCccccc----cChhhh
Q 037558          344 -GN--LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC-TSLIRVHLNGNNLTGN----ISEALA  415 (518)
Q Consensus       344 -~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~  415 (518)
                       ..  .+|++|++++|.+.+..+..+..                    .+..+ ++|++|++++|++++.    ++..+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAK--------------------FLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHH--------------------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence             11  24555555555444433322211                    12222 3555555555555432    222333


Q ss_pred             C-CCCCCEEecccCccccccC----ccccCCCCCCEEEccCCcccc-------CccccccCCCCCCEEeCcCCcCccc
Q 037558          416 I-YPNLTFIDLSRNNFYGEIS----SNWGKCPKLDTLNVSMNNITG-------GIPREIGNSSQLQALDLSLNHIVGE  481 (518)
Q Consensus       416 ~-l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~  481 (518)
                      . .++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+       .++..+..+++|+.||+++|++.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3 2355555555555543321    223444555555555555321       1222344555555556666555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=215.96  Aligned_cols=245  Identities=20%  Similarity=0.247  Sum_probs=139.0

Q ss_pred             ccccccCCCCCCEeeCcCCCCccCCc----ccccCCCCCcEEEccCC---cCcccCcccc-------CCCCCccEEEccC
Q 037558          243 ILSSLGKFKSLIDLQLNENQFTGYIP----RSFGNLTSLSTLRLSKN---ELFGSIPDEI-------GKMRSLSVLDLNE  308 (518)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~l~~  308 (518)
                      ++..+..+++|++|++++|.+.+..+    ..+..+++|++|++++|   ++.+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44455566677777777777665432    23556677777777764   3334444433       4566777777777


Q ss_pred             Ccccc----cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCC---------CCccEE
Q 037558          309 NQFKG----VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG---------GALEIF  375 (518)
Q Consensus       309 n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------~~L~~L  375 (518)
                      |.+.+    .++..+..+++|++|++++|.+++..+..+..                   .+..+         ++|+.|
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHHHTCCCCCEE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhcccCCCCcEE
Confidence            77665    24445566666666666666654322222111                   11111         455556


Q ss_pred             ecCCCcCc-cccC---hhhhcCCCCcEEEcccCcccc-----ccChhhhCCCCCCEEecccCccc----cccCccccCCC
Q 037558          376 TVSENHFQ-GTIP---TSVRNCTSLIRVHLNGNNLTG-----NISEALAIYPNLTFIDLSRNNFY----GEISSNWGKCP  442 (518)
Q Consensus       376 ~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~  442 (518)
                      ++++|.+. +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.++..+..++
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            66555554 2233   244456666666666666652     12225556666666666666664    34455556666


Q ss_pred             CCCEEEccCCccccC----cccccc--CCCCCCEEeCcCCcCcc----cCCccc-cCCCCCCEEECcCCcccccc
Q 037558          443 KLDTLNVSMNNITGG----IPREIG--NSSQLQALDLSLNHIVG----EIPKEL-GKLNSLTKLILRGNQRAVTL  506 (518)
Q Consensus       443 ~L~~L~ls~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~i  506 (518)
                      +|++|++++|.+.+.    ++..+.  .+++|+.|+|++|++.+    .+|..+ .++++|++|++++|++.+..
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            666666666666543    344442  26666666666666665    355555 44666666666666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.5e-24  Score=209.98  Aligned_cols=255  Identities=17%  Similarity=0.159  Sum_probs=158.0

Q ss_pred             EEcccCcCCccccccccCCCCCCEeeCcCCCCccCCc----ccccCCC-CCcEEEccCCcCcccCccccCCC-----CCc
Q 037558          232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP----RSFGNLT-SLSTLRLSKNELFGSIPDEIGKM-----RSL  301 (518)
Q Consensus       232 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L  301 (518)
                      +.+++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555444444445555555555554433    3444444 55555555555554444433332     455


Q ss_pred             cEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhh----cC-CCCccEE
Q 037558          302 SVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNI----CQ-GGALEIF  375 (518)
Q Consensus       302 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L  375 (518)
                      ++|++++|.+++..+..+...                   .... ++|++|++++|.+.+..+..+    .. ..+|+.|
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  143 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKT-------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL  143 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred             cEEECcCCcCChHHHHHHHHH-------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence            555555555543333321111                   0000 345555555555544433332    22 2578888


Q ss_pred             ecCCCcCcccc----ChhhhcCC-CCcEEEcccCccccccCh----hhhCC-CCCCEEecccCccccc----cCccccC-
Q 037558          376 TVSENHFQGTI----PTSVRNCT-SLIRVHLNGNNLTGNISE----ALAIY-PNLTFIDLSRNNFYGE----ISSNWGK-  440 (518)
Q Consensus       376 ~l~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~-  440 (518)
                      ++++|.+.+..    +..+..++ +|++|++++|++++..+.    .+..+ ++|++|++++|.+.+.    ++..+.. 
T Consensus       144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~  223 (362)
T 3goz_A          144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI  223 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred             EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence            88888776433    33445555 999999999999877654    44455 5999999999999863    3444544 


Q ss_pred             CCCCCEEEccCCccccCcc----ccccCCCCCCEEeCcCCcCcccC-------CccccCCCCCCEEECcCCccccc
Q 037558          441 CPKLDTLNVSMNNITGGIP----REIGNSSQLQALDLSLNHIVGEI-------PKELGKLNSLTKLILRGNQRAVT  505 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~~~~~  505 (518)
                      .++|++|++++|.+.+..+    ..+..+++|++|++++|++.+..       +..+..+++|++||+++|++.+.
T Consensus       224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4699999999999986544    34577899999999999955433       34567888999999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.2e-22  Score=186.77  Aligned_cols=190  Identities=21%  Similarity=0.267  Sum_probs=119.2

Q ss_pred             CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558           69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP  148 (518)
Q Consensus        69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  148 (518)
                      +||.|.|..|..  ..+.++++++++.. +|. .+.  +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE--GKKEVDCQGKSLDS-VPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG--GGTEEECTTCCCSS-CCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC--CCeEEecCCCCccc-cCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            577899999953  23467777777663 333 222  567777777777776666667777777777777777776666


Q ss_pred             ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCC
Q 037558          149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN  228 (518)
Q Consensus       149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  228 (518)
                      ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            66677777777777777776555555666666666666666666555555556666666666666665444445555555


Q ss_pred             CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      |++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            555555555555544444455555555555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=6.9e-23  Score=197.61  Aligned_cols=225  Identities=20%  Similarity=0.211  Sum_probs=125.6

Q ss_pred             CCCcEEeCCCCCCcccCCc---cccCCCCCCEEECCCCCCCcCCCccC--CCCCCCcEEEccCCCCCccCC----cCCcC
Q 037558          107 PRLAYLDLTGSGLFGTIPP---EVGLLSHLKFLFIDTNKLDGSIPPEV--GQLSSMEVFFLCSNYLNGSVP----PSLGN  177 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p----~~l~~  177 (518)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  .++++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3466666666655432110   11223557777777777776666666  667777777777777665433    23345


Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--c--chhccCCCCCcEEEcccCcCCccc--cc-cccCC
Q 037558          178 LSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP--I--PLFFGNLSNLKSLYLYGNSLSSPI--LS-SLGKF  250 (518)
Q Consensus       178 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~--~~-~l~~l  250 (518)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++...  +. .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            66666777766666666666666666666666666665431  1  112245566666666666664311  11 13445


Q ss_pred             CCCCEeeCcCCCCccCCcccccCC---CCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558          251 KSLIDLQLNENQFTGYIPRSFGNL---TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE  327 (518)
Q Consensus       251 ~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  327 (518)
                      ++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            566666666666665545444444   45666666666655 4444432  5566666666665532 22 344555555


Q ss_pred             eeccccccc
Q 037558          328 LALLYNHLS  336 (518)
Q Consensus       328 L~l~~n~l~  336 (518)
                      |++++|.++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=7.7e-24  Score=206.90  Aligned_cols=254  Identities=17%  Similarity=0.192  Sum_probs=143.1

Q ss_pred             CcEEEcccCcCCccccccccCC--CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCccc-CccccCCCCCccEEE
Q 037558          229 LKSLYLYGNSLSSPILSSLGKF--KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLD  305 (518)
Q Consensus       229 L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~  305 (518)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            566677666554   2334444  5666666666666654443 44566666666666666543 555566666666666


Q ss_pred             ccCCcccccCCccCcCCCCCCeeecccc-cccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCC-cCc
Q 037558          306 LNENQFKGVLPPSISNLTNLKELALLYN-HLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN-HFQ  383 (518)
Q Consensus       306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~  383 (518)
                      +++|.+.+..+..+..+++|++|++++| .+++.                      .++..+..+++|+.|++++| .++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence            6666666555555555666666666665 33321                      13333445556666666666 555


Q ss_pred             cc-cChhhhcCC-CCcEEEcccC--ccc-cccChhhhCCCCCCEEecccCc-cccccCccccCCCCCCEEEccCCc-ccc
Q 037558          384 GT-IPTSVRNCT-SLIRVHLNGN--NLT-GNISEALAIYPNLTFIDLSRNN-FYGEISSNWGKCPKLDTLNVSMNN-ITG  456 (518)
Q Consensus       384 ~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ls~n~-l~~  456 (518)
                      +. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..
T Consensus       183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence            33 344555666 6666666666  344 3344555566666666666666 554555556666667777776663 222


Q ss_pred             CccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558          457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK  511 (518)
Q Consensus       457 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~  511 (518)
                      .....+.++++|++|++++| +.......+.  ..++.|++++|++.+..|..++
T Consensus       263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence            22224556667777777766 3322222221  1244445667777666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4e-24  Score=213.00  Aligned_cols=245  Identities=21%  Similarity=0.244  Sum_probs=166.6

Q ss_pred             CcchhccCCCCCcEEEcccCcCCcccc----ccccCCCCCCEeeCcCCC---CccCCcccc-------cCCCCCcEEEcc
Q 037558          218 PIPLFFGNLSNLKSLYLYGNSLSSPIL----SSLGKFKSLIDLQLNENQ---FTGYIPRSF-------GNLTSLSTLRLS  283 (518)
Q Consensus       218 ~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~  283 (518)
                      .++..+..+++|++|++++|.++...+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            456677888999999999999987544    447789999999999964   445556554       688999999999


Q ss_pred             CCcCcc----cCccccCCCCCccEEEccCCcccccCCccCc----CC---------CCCCeeeccccccc-ccCCccccc
Q 037558          284 KNELFG----SIPDEIGKMRSLSVLDLNENQFKGVLPPSIS----NL---------TNLKELALLYNHLS-GSIPPSLGN  345 (518)
Q Consensus       284 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~l~-~~~p~~~~~  345 (518)
                      +|.+++    .+|..+..+++|++|++++|.+.+..+..+.    .+         ++|++|++++|.++ +.++.    
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----  178 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----  178 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH----
Confidence            999987    4677888899999999999999754333332    22         55666666665554 11111    


Q ss_pred             ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcc-----ccChhhhcCCCCcEEEcccCccc----cccChhhhC
Q 037558          346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG-----TIPTSVRNCTSLIRVHLNGNNLT----GNISEALAI  416 (518)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~  416 (518)
                                      +...+..+++|+.|++++|.+..     ..+..+..+++|++|+|++|.++    ..++..+..
T Consensus       179 ----------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          179 ----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             ----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             ----------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence                            01234445566666666665542     22335566677777777777765    445566667


Q ss_pred             CCCCCEEecccCccccc----cCcccc--CCCCCCEEEccCCcccc----Cccccc-cCCCCCCEEeCcCCcCcccC
Q 037558          417 YPNLTFIDLSRNNFYGE----ISSNWG--KCPKLDTLNVSMNNITG----GIPREI-GNSSQLQALDLSLNHIVGEI  482 (518)
Q Consensus       417 l~~L~~L~L~~n~l~~~----~~~~~~--~~~~L~~L~ls~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~  482 (518)
                      +++|++|+|++|.+++.    ++..+.  .+++|++|++++|.+.+    .+|..+ .++++|++|++++|++.+..
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            77777777777777654    344442  36777777777777775    366655 45677777777777777655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=7.9e-22  Score=182.72  Aligned_cols=195  Identities=20%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCC-CCccCCcCCcCCCCCCEEEccC-ccccccCCccccCCCCCcEEEc
Q 037558          133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY-LNGSVPPSLGNLSHISLLFIYD-NLFSGFIPSDIGNSKSIFNLDL  210 (518)
Q Consensus       133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l  210 (518)
                      |++|++++|.+++..+..++++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..+.++++|++|++
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l  112 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI  112 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence            4444444444443333334444444444444443 3322223444444555555544 4444444444455555555555


Q ss_pred             ccCcCCCCcchhccCCCCCc---EEEcccC-cCCccccccccCCCCCC-EeeCcCCCCccCCcccccCCCCCcEEEccCC
Q 037558          211 SSNQFSGPIPLFFGNLSNLK---SLYLYGN-SLSSPILSSLGKFKSLI-DLQLNENQFTGYIPRSFGNLTSLSTLRLSKN  285 (518)
Q Consensus       211 ~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  285 (518)
                      ++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|+++. +|......++|++|++++|
T Consensus       113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCC
Confidence            5555543 333 44444454   5555555 55554444555555666 66666665552 2322222256666666666


Q ss_pred             c-CcccCccccCCC-CCccEEEccCCcccccCCccCcCCCCCCeeecccc
Q 037558          286 E-LFGSIPDEIGKM-RSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN  333 (518)
Q Consensus       286 ~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  333 (518)
                      + +++..+..+..+ ++|++|++++|.+++ +|..  .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            3 554444555666 666666666666653 3322  4455666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=192.73  Aligned_cols=225  Identities=20%  Similarity=0.169  Sum_probs=184.2

Q ss_pred             CEEEEEcCCCCCccccCC--ccCCCCCCCcEEeCCCCCCcccCCccc--cCCCCCCEEECCCCCCCcCCC----ccCCCC
Q 037558           83 RVINISLRNTGLSGTLHG--FSFSSFPRLAYLDLTGSGLFGTIPPEV--GLLSHLKFLFIDTNKLDGSIP----PEVGQL  154 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p----~~l~~l  154 (518)
                      +++.+.+.+..+....-.  ..+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466777776665432100  012345679999999999999999888  999999999999999987655    445689


Q ss_pred             CCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcccccc--C--CccccCCCCCcEEEcccCcCCCCcch----hccCC
Q 037558          155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF--I--PSDIGNSKSIFNLDLSSNQFSGPIPL----FFGNL  226 (518)
Q Consensus       155 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~l~~l  226 (518)
                      ++|++|++++|.+.+..+..+.++++|++|++++|++.+.  +  +..+..+++|++|++++|.++. ++.    .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            9999999999999988888999999999999999997652  2  2334789999999999999973 333    35788


Q ss_pred             CCCcEEEcccCcCCccccccccCC---CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558          227 SNLKSLYLYGNSLSSPILSSLGKF---KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV  303 (518)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  303 (518)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999999878777776   69999999999999 5677664  8999999999999853 44 678899999


Q ss_pred             EEccCCcccc
Q 037558          304 LDLNENQFKG  313 (518)
Q Consensus       304 L~l~~n~l~~  313 (518)
                      |++++|.++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.8e-21  Score=178.80  Aligned_cols=177  Identities=27%  Similarity=0.320  Sum_probs=82.5

Q ss_pred             CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      .++++++++.++ .+|..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            334444444444 3443332  3444444444444444444444444444444444444444444444444455555554


Q ss_pred             CcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc
Q 037558          213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP  292 (518)
Q Consensus       213 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  292 (518)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            44444433444444455555555444444333334444445555555554444333344444555555555555444333


Q ss_pred             cccCCCCCccEEEccCCccc
Q 037558          293 DEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       293 ~~~~~l~~L~~L~l~~n~l~  312 (518)
                      ..+..+++|++|++++|.+.
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBC
T ss_pred             HHHhCCCCCCEEEeeCCcee
Confidence            34444555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.3e-21  Score=186.50  Aligned_cols=194  Identities=20%  Similarity=0.315  Sum_probs=96.5

Q ss_pred             CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558          103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS  182 (518)
Q Consensus       103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  182 (518)
                      ..++++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            3455666666666666543 23 45666666666666666653 333 6666666666666666553 2 2455555666


Q ss_pred             EEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558          183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ  262 (518)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  262 (518)
                      +|++++|.+.+. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            666666555542 1 25555555555555555543222  4444555555555554443211  4444444444444444


Q ss_pred             CccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       263 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      +++..+  +..+++|++|++++|++++..  .+..+++|++|++++|.++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            443211  334444444444444443222  1334444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.3e-21  Score=184.65  Aligned_cols=207  Identities=26%  Similarity=0.303  Sum_probs=154.6

Q ss_pred             eCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcccc
Q 037558          113 DLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS  192 (518)
Q Consensus       113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~  192 (518)
                      .+..+.+.+.+  ....+++|++|++++|.+. .+| .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence            44444444332  2456778888888888887 355 577888888888888888743 33 788888888888888877


Q ss_pred             ccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCccccc
Q 037558          193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG  272 (518)
Q Consensus       193 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  272 (518)
                      +.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.. . +.
T Consensus        99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~  170 (308)
T 1h6u_A           99 NV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LA  170 (308)
T ss_dssp             CC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GT
T ss_pred             Cc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hc
Confidence            54  3578888888888888888753 3 27788888888888888876433  778888888888888887543 3 77


Q ss_pred             CCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccc
Q 037558          273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG  337 (518)
Q Consensus       273 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  337 (518)
                      .+++|++|++++|++++..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.+++
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            88888888888888874433  677888888888888887543  36778888888888888864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.4e-21  Score=178.46  Aligned_cols=203  Identities=19%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             CCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcc-ccccCCccccCCCCCcEEEccc-CcCCCCcchhc
Q 037558          146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNL-FSGFIPSDIGNSKSIFNLDLSS-NQFSGPIPLFF  223 (518)
Q Consensus       146 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l  223 (518)
                      .+|. +.  ++|++|++++|.+.+..+..+.++++|++|++++|. +++..+..+.++++|++|++++ |.+++..+..|
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 33  389999999999987666688899999999999997 8777777888999999999998 88887666788


Q ss_pred             cCCCCCcEEEcccCcCCccccccccCCCCCC---EeeCcCC-CCccCCcccccCCCCCc-EEEccCCcCcccCccccCCC
Q 037558          224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLI---DLQLNEN-QFTGYIPRSFGNLTSLS-TLRLSKNELFGSIPDEIGKM  298 (518)
Q Consensus       224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l  298 (518)
                      ..+++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|+++ .+|......
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~  178 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG  178 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence            889999999999998887 554 77788887   8888888 88876666788888888 8888888887 444433333


Q ss_pred             CCccEEEccCCc-ccccCCccCcCC-CCCCeeecccccccccCCcccccccCcEEEccCc
Q 037558          299 RSLSVLDLNENQ-FKGVLPPSISNL-TNLKELALLYNHLSGSIPPSLGNLILRELLLSGN  356 (518)
Q Consensus       299 ~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n  356 (518)
                      ++|++|++++|+ +++..+..+..+ ++|+.|++++|.+++ +|.. ....++.|+++++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence            788888888884 876666677777 888888888888773 4433 3355666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=8e-21  Score=171.96  Aligned_cols=185  Identities=19%  Similarity=0.250  Sum_probs=132.1

Q ss_pred             CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558           69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP  148 (518)
Q Consensus        69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  148 (518)
                      ..|.|.++.|...+           +. .+|.   .-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus         5 C~C~~~~v~c~~~~-----------l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (208)
T 2o6s_A            5 CSCSGTTVECYSQG-----------RT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN   69 (208)
T ss_dssp             CEEETTEEECCSSC-----------CS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CEECCCEEEecCCC-----------cc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence            45789999996432           11 1222   224588899999988876666667888888888888888885555


Q ss_pred             ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCC
Q 037558          149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN  228 (518)
Q Consensus       149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  228 (518)
                      ..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  149 (208)
T 2o6s_A           70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  149 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence            55788888888888888887655556778888888888888887766666777788888888888777655556677777


Q ss_pred             CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCC
Q 037558          229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT  275 (518)
Q Consensus       229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  275 (518)
                      |++|++++|.+.+       .+++|++|+++.|+++|.+|..++.++
T Consensus       150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            7777777775543       344566666666666666666555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=2.8e-20  Score=191.97  Aligned_cols=200  Identities=23%  Similarity=0.318  Sum_probs=133.9

Q ss_pred             CCCC-----ccCce-eeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCC
Q 037558           68 ISPC-----AWYGI-SCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN  141 (518)
Q Consensus        68 ~~~c-----~w~g~-~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n  141 (518)
                      .++|     .|.++ .|. .++++.++++++++.+ +|. .+  +++|++|+|++|.+. .+|   ..+++|++|++++|
T Consensus        40 ~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N  110 (571)
T 3cvr_A           40 ALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDN  110 (571)
T ss_dssp             CCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS
T ss_pred             CCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCC
Confidence            4566     68888 674 3578888888888876 554 33  377888888888876 556   45678888888888


Q ss_pred             CCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcch
Q 037558          142 KLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL  221 (518)
Q Consensus       142 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  221 (518)
                      .+++ +|. +.+  +|++|++++|.+.+ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.
T Consensus       111 ~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          111 RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence            8875 666 654  78888888888875 555   56778888888887775 443   46677777777777775 554


Q ss_pred             hccCCCCCcEEEcccCcCCccccccccCCCCC-------CEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccc
Q 037558          222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL-------IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE  294 (518)
Q Consensus       222 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~  294 (518)
                       +.  ++|+.|++++|.++. +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..
T Consensus       178 -l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          178 -LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             -CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             -hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence             44  677777777777763 444 433  45       66666666665 34555555666666666666665555554


Q ss_pred             cCC
Q 037558          295 IGK  297 (518)
Q Consensus       295 ~~~  297 (518)
                      +..
T Consensus       250 l~~  252 (571)
T 3cvr_A          250 LSQ  252 (571)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1e-19  Score=164.62  Aligned_cols=131  Identities=23%  Similarity=0.293  Sum_probs=60.0

Q ss_pred             CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558          131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL  210 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  210 (518)
                      ++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35555555555555333334455555555555555555333333444555555555555544443333444444444444


Q ss_pred             ccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       211 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            444444333333344444444444444444333333333333444444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.9e-19  Score=176.46  Aligned_cols=239  Identities=18%  Similarity=0.159  Sum_probs=157.1

Q ss_pred             cEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc-cccCCCCCccE-EEcc
Q 037558          230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-DEIGKMRSLSV-LDLN  307 (518)
Q Consensus       230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~l~  307 (518)
                      ++++.++++++. +|..+.  +++++|++++|+++...+..|.++++|++|++++|++.+.+| ..|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt~-iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567778888776 555553  578999999999886555678889999999999998765555 45777887765 5566


Q ss_pred             CCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCc-cCcccCchhhcCC-CCccEEecCCCcCcc
Q 037558          308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGN-HFAGYLPYNICQG-GALEIFTVSENHFQG  384 (518)
Q Consensus       308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n-~~~~~~~~~~~~~-~~L~~L~l~~n~l~~  384 (518)
                      +|++.+..|..+..+++|++|++++|.+.+..+..+.. ..+..+++.++ .+....+..+... ..++.|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            78888777778888899999999998887544443333 56677777654 4444434444444 34667777777776 


Q ss_pred             ccChhhhcCCCCcEEEccc-CccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558          385 TIPTSVRNCTSLIRVHLNG-NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG  463 (518)
Q Consensus       385 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  463 (518)
                      .++.......+|+++++.+ |.++...++.|..+++|++|++++|+++.. |.  ..+.+|+.|.+.++.-...+|. +.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~--~~~~~L~~L~~l~~~~l~~lP~-l~  243 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS--YGLENLKKLRARSTYNLKKLPT-LE  243 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS--SSCTTCCEEECTTCTTCCCCCC-TT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch--hhhccchHhhhccCCCcCcCCC-ch
Confidence            3444444456677777754 455544445666777777777777776633 32  1244556666555544445553 56


Q ss_pred             CCCCCCEEeCcCC
Q 037558          464 NSSQLQALDLSLN  476 (518)
Q Consensus       464 ~l~~L~~L~L~~n  476 (518)
                      .+++|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            6667777776554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.2e-19  Score=184.09  Aligned_cols=186  Identities=23%  Similarity=0.316  Sum_probs=140.2

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+.+ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            88999999998876 66655  378999999999888 677   457889999999998885 666 655  88899999


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI  267 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (518)
                      +|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|+++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            888887 454   67888888888888885 554   56788888888888877 555 55  78888888888887 45


Q ss_pred             cccccCCCCC-------cEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558          268 PRSFGNLTSL-------STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN  321 (518)
Q Consensus       268 ~~~l~~l~~L-------~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  321 (518)
                      |. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            55 443  56       77788777776 56666666777777777777777766665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=6.7e-19  Score=172.62  Aligned_cols=181  Identities=17%  Similarity=0.085  Sum_probs=94.4

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCc-cCCCCCCCcE-EEccCCCCCccCCcCCcCCCCCCEE
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPP-EVGQLSSMEV-FFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~-L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      +++++|+|++|++...-+.+|.++++|++|+|++|.+.+.+|. .|.+++++++ +.++.|++....|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4677777777777544445566777777777777766544443 3566666554 4444566665555556666666666


Q ss_pred             EccCccccccCCccccCCCCCcEEEccc-CcCCCCcchhccCCC-CCcEEEcccCcCCccccccccCCCCCCEeeCcC-C
Q 037558          185 FIYDNLFSGFIPSDIGNSKSIFNLDLSS-NQFSGPIPLFFGNLS-NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE-N  261 (518)
Q Consensus       185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n  261 (518)
                      ++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++...+. .....+++.+++.+ |
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCC
Confidence            6666666655444444555555555544 233322223333332 345555555555442222 22233455555543 3


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCc
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      .++...+..|..+++|++|++++|+++
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcC
Confidence            333222233444555555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.5e-18  Score=159.19  Aligned_cols=158  Identities=22%  Similarity=0.289  Sum_probs=113.6

Q ss_pred             CCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC
Q 037558           68 ISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI  147 (518)
Q Consensus        68 ~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  147 (518)
                      .+.|.|.++.|...+           + +.+|. .+  .++|++|+|++|.+.+..+..+..+++|++|++++|.++...
T Consensus        16 ~~~Cs~~~v~c~~~~-----------l-~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~   80 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKR-----------H-ASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP   80 (229)
T ss_dssp             TCEEETTEEECTTSC-----------C-SSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCEEeCCEeEccCCC-----------c-CccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence            588999999996422           1 12332 22  278888888888888777778888888888888888887444


Q ss_pred             CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558          148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS  227 (518)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  227 (518)
                      +..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..++
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            455678888888888888887655556677778888888777777 5566677777777777777777755555666667


Q ss_pred             CCcEEEcccCcCCc
Q 037558          228 NLKSLYLYGNSLSS  241 (518)
Q Consensus       228 ~L~~L~l~~n~~~~  241 (518)
                      +|+.|++++|.+..
T Consensus       160 ~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          160 SLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCCEEECTTSCBCT
T ss_pred             CCCEEEeeCCCccC
Confidence            77777777666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=3.2e-19  Score=186.14  Aligned_cols=170  Identities=22%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+. +. +..+++|++|+|++|.+.+ + +.+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            3445555555555554321 2 345555555555555555432 22 4555555555555555542 1 23444555555


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            55555554432  2344444455555544444432  234444444444444444444222  44444444444444444


Q ss_pred             ccCCcccccCCCCCcEEEccCCcC
Q 037558          264 TGYIPRSFGNLTSLSTLRLSKNEL  287 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~l  287 (518)
                      .+.  ..+..+++|+.|++++|++
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEE
T ss_pred             CCC--hHHccCCCCCEEEccCCcC
Confidence            432  1234444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=8.7e-19  Score=166.99  Aligned_cols=170  Identities=27%  Similarity=0.429  Sum_probs=78.0

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL  208 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  208 (518)
                      .+++|++|++++|.+. .++ .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+.+.  ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            3444444444444443 122 2444444444444444444221 1 44444444444444444431  124444455555


Q ss_pred             EcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558          209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      ++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            5555544432  2344445555555555554442  334445555555555555543322  445555555555555554


Q ss_pred             ccCccccCCCCCccEEEccCCccc
Q 037558          289 GSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       289 ~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      + ++ .+..+++|+.|++++|.+.
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             C-Ch-hhccCCCCCEEECcCCccc
Confidence            2 22 2445555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=157.29  Aligned_cols=153  Identities=17%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             CeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC
Q 037558          326 KELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN  404 (518)
Q Consensus       326 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  404 (518)
                      +.+++++|.++ .+|..+. ..++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            46777777766 3454332 345667777776665533 33555666666666666666555555666666666666666


Q ss_pred             ccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcc
Q 037558          405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG  480 (518)
Q Consensus       405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  480 (518)
                      ++++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|++.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            6665555556666666666666666665555556666666666666666665555556666666666666666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1e-18  Score=166.57  Aligned_cols=174  Identities=22%  Similarity=0.331  Sum_probs=146.2

Q ss_pred             cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558          102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI  181 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  181 (518)
                      .+..+++|++|++++|.+... + .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+..+++|
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L  114 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKL  114 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred             chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence            345788899999999988654 3 48889999999999999985 444 8899999999999999875 3 348889999


Q ss_pred             CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      ++|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            9999999998864  4688899999999999999865  568889999999999999988544  888999999999999


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCcc
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELFG  289 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~  289 (518)
                      .+++. + .+..+++|+.|++++|+++.
T Consensus       189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            99863 4 48899999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=9.4e-18  Score=152.87  Aligned_cols=86  Identities=16%  Similarity=0.208  Sum_probs=35.5

Q ss_pred             CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558          131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL  210 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  210 (518)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            34444444444444333334444444444444444444333444444444444444444443332222333333333333


Q ss_pred             ccCcCC
Q 037558          211 SSNQFS  216 (518)
Q Consensus       211 ~~n~~~  216 (518)
                      ++|.++
T Consensus       112 ~~N~l~  117 (220)
T 2v9t_B          112 NANKIN  117 (220)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            333333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.6e-18  Score=153.89  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             CeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCc
Q 037558          326 KELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNN  405 (518)
Q Consensus       326 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  405 (518)
                      +.++.+++.++ .+|..+. ..++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            46777777766 4454332 567777777777776666666666777777777777766666666677777777777777


Q ss_pred             cccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          406 LTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       406 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      ++...+..+..+++|++|+|++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            76555555666677777777777776666666666677777777777766555555666666777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=4.5e-18  Score=177.53  Aligned_cols=169  Identities=24%  Similarity=0.390  Sum_probs=103.4

Q ss_pred             CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558           82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF  161 (518)
Q Consensus        82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  161 (518)
                      .+++.|+++++.+.. ++  .+..+++|+.|+|++|.+.+..+  +..+++|++|+|++|.+.+ +| .+..+++|++|+
T Consensus        43 ~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            355566666665543 22  35666666666666666654333  6666666666666666653 22 566666666666


Q ss_pred             ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558          162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS  241 (518)
Q Consensus       162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (518)
                      |++|.+.+ + +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+++
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            66666653 2 3466666666666666666654  456666666666666666665444  6666666666666666665


Q ss_pred             cccccccCCCCCCEeeCcCCCCcc
Q 037558          242 PILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      .  ..+..+++|+.|++++|.+.+
T Consensus       190 l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          190 L--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             C--GGGTTCTTCSEEECCSEEEEC
T ss_pred             C--hHHccCCCCCEEEccCCcCcC
Confidence            2  346666666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=152.42  Aligned_cols=131  Identities=24%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             cEEEccCCCCCccCC-cCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEccc
Q 037558          158 EVFFLCSNYLNGSVP-PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG  236 (518)
Q Consensus       158 ~~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  236 (518)
                      ++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            444444444443322 2234444445555544444444444444455555555555555444444444455555555555


Q ss_pred             CcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558          237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      |.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|.+.
T Consensus       115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5444444444444444444444444444444444444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3.6e-18  Score=168.13  Aligned_cols=156  Identities=21%  Similarity=0.120  Sum_probs=91.0

Q ss_pred             CcEEEccCccCcccCchhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecc
Q 037558          348 LRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS  426 (518)
Q Consensus       348 L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  426 (518)
                      ++.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..|..+++|++|+|++|+++...+..+..+++|++|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444555544444444444 55566666666666655555556666666666666666665555566666666666666


Q ss_pred             cCccccccCccccCCCCCCEEEccCCccccCccccc---cCCCCCCEEeCcCCcCcccCCccccCCCC--CCEEECcCCc
Q 037558          427 RNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI---GNSSQLQALDLSLNHIVGEIPKELGKLNS--LTKLILRGNQ  501 (518)
Q Consensus       427 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~  501 (518)
                      +|++.+..+..|..+++|++|++++|++.+..+..|   ..+++|+.|+|++|++.+..+..+..++.  ++.|++++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            666665556666666666666666666664333333   44666666666666666544455555554  3566666666


Q ss_pred             cc
Q 037558          502 RA  503 (518)
Q Consensus       502 ~~  503 (518)
                      +.
T Consensus       201 ~~  202 (361)
T 2xot_A          201 LE  202 (361)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.2e-17  Score=153.15  Aligned_cols=152  Identities=16%  Similarity=0.068  Sum_probs=77.3

Q ss_pred             CCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC
Q 037558          325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN  404 (518)
Q Consensus       325 L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  404 (518)
                      -+.++.+++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            345666665554 3443222 45555555555555555555555555555555555554333334445555555555555


Q ss_pred             ccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      ++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555444444455555555555555554 34444445555555555555555333334445555555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=5.8e-18  Score=166.63  Aligned_cols=176  Identities=19%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCC-CCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccC
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVG-QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD  188 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~  188 (518)
                      +.++++++.+.. +|..+.  +.+++|+|++|.+++..+..+. ++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            467777777643 554432  4577788888887765555565 777778888877777766666677777777777777


Q ss_pred             ccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccc---cCCCCCCEeeCcCCCCcc
Q 037558          189 NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL---GKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       189 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~  265 (518)
                      |.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+   ..+++|+.|++++|.+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            77776666667777777777777777776666667777777777777777666333333   345666666666666664


Q ss_pred             CCcccccCCCC--CcEEEccCCcCc
Q 037558          266 YIPRSFGNLTS--LSTLRLSKNELF  288 (518)
Q Consensus       266 ~~~~~l~~l~~--L~~L~l~~n~l~  288 (518)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444555544  255666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=7.5e-20  Score=195.71  Aligned_cols=261  Identities=16%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcE
Q 037558           32 PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAY  111 (518)
Q Consensus        32 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~  111 (518)
                      ...+++++.++........+..-..|...      ....+.|.+..+. ..+++.++|.++.+... +. .+.....|+.
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-~~l~~l~Ls~  200 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGD------STPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-ALLQHKKLSQ  200 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCC------CCccccCCCceec-CCccceEEeeCCCCCcc-hh-hHhhcCccCc
Confidence            34567888888877644333333445432      1345678877765 36789999988877653 22 2222222333


Q ss_pred             EeC-----CCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          112 LDL-----TGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       112 L~L-----~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      +.+     +.|.+. ..++.+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..|.++++|++|+|
T Consensus       201 ~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  277 (727)
T 4b8c_D          201 YSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL  277 (727)
T ss_dssp             ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred             ccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence            222     222222 34667888999999999999988 78888888999999999999988 78888899999999999


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCC-CCCEeeCcCCCCcc
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK-SLIDLQLNENQFTG  265 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~  265 (518)
                      ++|.++ .+|..++++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+.... ....+++++|.+++
T Consensus       278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            999988 66888999999999999999887 6777788999999999999999887777665432 12346788888887


Q ss_pred             CCcccccCCCCCcEEEccCC--------cCcccCccccCCCCCccEEEccCCccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKN--------ELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n--------~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      .+|..      |+.|++++|        .+.+..+..+..+..+....+++|.+.
T Consensus       356 ~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          356 PLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CCCCC-----------------------------------------------CCC
T ss_pred             cCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            76654      445556555        222222333344555556666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=7e-18  Score=151.05  Aligned_cols=152  Identities=14%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL  208 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  208 (518)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3444455555554444 333 3444555555555555332  12344555555555555555555445555555555555


Q ss_pred             EcccCcCCCCcchhccCCCCCcEEEcccCc-CCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcC
Q 037558          209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL  287 (518)
Q Consensus       209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  287 (518)
                      ++++|.+++..+..++.+++|++|++++|. ++. ++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            555555555455555556666666666665 333 22 455666666666666666542 2 456666677777776665


Q ss_pred             c
Q 037558          288 F  288 (518)
Q Consensus       288 ~  288 (518)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.4e-17  Score=149.00  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      .++++|++|++++|.+. .++ .+..+++|++|++++|.++  .+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34555666666666554 333 4555666666666666443  2335556666666666666665555555666666666


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ  262 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  262 (518)
                      |++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            6666666655555556666666666666665 33 333 45556666666666666554 22 45555666666666665


Q ss_pred             Cc
Q 037558          263 FT  264 (518)
Q Consensus       263 ~~  264 (518)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            44

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=2.1e-20  Score=193.93  Aligned_cols=120  Identities=17%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558          372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM  451 (518)
Q Consensus       372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~  451 (518)
                      |+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|++|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5555555555553 343 555555555666555555 445555555555555555555554 33 455555555555555


Q ss_pred             CccccCc-cccccCCCCCCEEeCcCCcCcccCCcc---ccCCCCCCEEE
Q 037558          452 NNITGGI-PREIGNSSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLI  496 (518)
Q Consensus       452 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~  496 (518)
                      |++++.. |..+..+++|+.|++++|++.+..|..   +..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            5555443 555555555555555555555433311   12355555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.2e-17  Score=154.80  Aligned_cols=168  Identities=19%  Similarity=0.237  Sum_probs=84.4

Q ss_pred             CCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558          106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF  185 (518)
Q Consensus       106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  185 (518)
                      +.+++.++++++.+.+..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+. +. +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence            344555555555554322  3555666666666666665 344 455666666666666666533 22 55566666666


Q ss_pred             ccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558          186 IYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       186 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      +++|.+++. +. +.. ++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            666655542 21 112 5555555555555532  2344555555555555554442  134444444444444444443


Q ss_pred             CCcccccCCCCCcEEEccCCcCc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      .  ..+..+++|+.|++++|++.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEE
T ss_pred             h--HHhccCCCCCEEeCCCCccc
Confidence            3  23444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.5e-19  Score=187.54  Aligned_cols=203  Identities=16%  Similarity=0.166  Sum_probs=142.9

Q ss_pred             CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc-------------CcccCccccCCCCCccEEE-ccCCccccc
Q 037558          249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE-------------LFGSIPDEIGKMRSLSVLD-LNENQFKGV  314 (518)
Q Consensus       249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~~~  314 (518)
                      ..++|+.|++++|++. .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+   
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence            3445555555555554 345555555555555554432             2233444444445555544 333322   


Q ss_pred             CCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCC
Q 037558          315 LPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCT  394 (518)
Q Consensus       315 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  394 (518)
                              .+|+.+.+.+|.+++. |    ...++.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..+..++
T Consensus       423 --------~~L~~l~l~~n~i~~l-~----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKM-E----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHH-H----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             --------chhhhhhhhccccccc-C----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                    1233344444444421 1    1358899999999887 455 888999999999999998 7899999999


Q ss_pred             CCcEEEcccCccccccChhhhCCCCCCEEecccCcccccc-CccccCCCCCCEEEccCCccccCcccc---ccCCCCCCE
Q 037558          395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLDTLNVSMNNITGGIPRE---IGNSSQLQA  470 (518)
Q Consensus       395 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~~l~~L~~  470 (518)
                      +|+.|+|++|++++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|..   +..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            99999999999997 55 8999999999999999999876 899999999999999999999755432   345889999


Q ss_pred             EeC
Q 037558          471 LDL  473 (518)
Q Consensus       471 L~L  473 (518)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.5e-17  Score=155.88  Aligned_cols=169  Identities=18%  Similarity=0.275  Sum_probs=107.2

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL  208 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  208 (518)
                      .+.++..++++++.+++ ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +.++++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            45566777778777763 33 4667788888888888776 444 57777778888888777776544  7777777777


Q ss_pred             EcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558          209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      ++++|.+++ ++. +.. ++|++|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            777777764 222 222 6666666666666652  2455666666666666666543 2 3555666666666666655


Q ss_pred             ccCccccCCCCCccEEEccCCccc
Q 037558          289 GSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       289 ~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ch--HHhccCCCCCEEeCCCCccc
Confidence            43  34555556666666665555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.7e-16  Score=141.25  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh-hhhcCCCCcEEEcccCccccccChhhhCCCCCCEEeccc
Q 037558          349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT-SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR  427 (518)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  427 (518)
                      +.+++++|.+. .+|..+.  .+++.|++++|.+.+..+. .+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57777777774 3444333  2777788888877755543 367777788888888877777777777777788888888


Q ss_pred             CccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC
Q 037558          428 NNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP  483 (518)
Q Consensus       428 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  483 (518)
                      |++.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            87777767667777778888888877777777777777777778887777765433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.7e-17  Score=159.76  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=83.6

Q ss_pred             cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC-EEEccCCccccCccccccCCCCCCE
Q 037558          392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD-TLNVSMNNITGGIPREIGNSSQLQA  470 (518)
Q Consensus       392 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~  470 (518)
                      .+++|+++++++|+++.....+|.++++|+.+++.+| +....+..|.+|++|+ .+++.+ .++...+.+|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            3788888888888888777778888888888888887 6656677788888888 888887 666555677888888888


Q ss_pred             EeCcCCcCcccCCccccCCCCCCEEEC
Q 037558          471 LDLSLNHIVGEIPKELGKLNSLTKLIL  497 (518)
Q Consensus       471 L~L~~n~l~~~~~~~l~~l~~L~~L~l  497 (518)
                      +++++|.+....+.+|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            888888888777778888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=8.3e-17  Score=156.29  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             CCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCC-EEeCcCCcCcccCCccccCCCCCCEE
Q 037558          417 YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQ-ALDLSLNHIVGEIPKELGKLNSLTKL  495 (518)
Q Consensus       417 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L  495 (518)
                      +++|+++++++|++....+..|.+|++|+.+++.+| +....+.+|.+|++|+ .+++.+ .+..+.+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566666666666665555555666666666666665 4433444566666666 666665 4554555566666666666


Q ss_pred             ECcCCccccccCccCccCCCCC
Q 037558          496 ILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       496 ~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      ++++|++..--+..+.++++|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCC
T ss_pred             EeCCCccCccchhhhcCCcchh
Confidence            6666665433334556665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.3e-16  Score=137.26  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=102.6

Q ss_pred             CCccEEecCCCcCc-cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEE
Q 037558          370 GALEIFTVSENHFQ-GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN  448 (518)
Q Consensus       370 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  448 (518)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56777777777776 56666677778888888888887755  6677788888888888888766777776788888888


Q ss_pred             ccCCccccCc-cccccCCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEECcCCccccccCcc
Q 037558          449 VSMNNITGGI-PREIGNSSQLQALDLSLNHIVGEIP---KELGKLNSLTKLILRGNQRAVTLSFI  509 (518)
Q Consensus       449 ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~ip~~  509 (518)
                      +++|.+.+.. +..+..+++|++|++++|++.+..+   ..+..+++|++|++++|.+ .++|+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhcccc
Confidence            8888887532 2667788888888888888885544   4677888888888888877 345543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=3.3e-17  Score=175.29  Aligned_cols=218  Identities=17%  Similarity=0.211  Sum_probs=123.4

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEEC-----CCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI-----DTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI  181 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-----~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  181 (518)
                      +.++.|+|.++.+.. .+..+.....|+.+.+     +.|.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            668889998887755 3333333333333333     334444 45777899999999999999998 788888899999


Q ss_pred             CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      ++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++. +|..|+.+++|+.|++++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCC
Confidence            99999999999 78889999999999999999999 779999999999999999999974 7888999999999999999


Q ss_pred             CCccCCcccccCCC-CCcEEEccCCcCcccCccccCCCCCccEEEccCC--------cccccCCccCcCCCCCCeeeccc
Q 037558          262 QFTGYIPRSFGNLT-SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN--------QFKGVLPPSISNLTNLKELALLY  332 (518)
Q Consensus       262 ~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~  332 (518)
                      .+++.+|..+.... .+..+++++|.+++.+|..      |+.|+++.|        .+.+..+..+..+..+....++.
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~  400 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY  400 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence            99988887775432 2234788999998877754      455666665        23333333344555556666666


Q ss_pred             cccc
Q 037558          333 NHLS  336 (518)
Q Consensus       333 n~l~  336 (518)
                      |.+.
T Consensus       401 Nil~  404 (727)
T 4b8c_D          401 NTLC  404 (727)
T ss_dssp             -CCC
T ss_pred             cccc
Confidence            6554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=4.8e-16  Score=135.23  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=79.3

Q ss_pred             CCCCcEEeCCCCCCc-ccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          106 FPRLAYLDLTGSGLF-GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356677777777665 45666666666677777766666633  556666666666666666665455555556666666


Q ss_pred             EccCccccccC-CccccCCCCCcEEEcccCcCCCCcc---hhccCCCCCcEEEcccCcCC
Q 037558          185 FIYDNLFSGFI-PSDIGNSKSIFNLDLSSNQFSGPIP---LFFGNLSNLKSLYLYGNSLS  240 (518)
Q Consensus       185 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~  240 (518)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666665432 1455556666666666666554333   24555555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.9e-15  Score=134.44  Aligned_cols=128  Identities=23%  Similarity=0.276  Sum_probs=83.4

Q ss_pred             EEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCc-cccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCC
Q 037558           87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPP-EVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN  165 (518)
Q Consensus        87 l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n  165 (518)
                      ++++++++. .+|. .+.  +++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        13 l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           13 VDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            444444443 3443 222  2777777777777655443 3677777777777777777666677777777777777777


Q ss_pred             CCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC
Q 037558          166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP  218 (518)
Q Consensus       166 ~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  218 (518)
                      .+.+..+..+.++++|++|++++|++++..|..+..+++|++|++++|.+...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            77766666666677777777777777666666666666666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.4e-16  Score=133.28  Aligned_cols=128  Identities=21%  Similarity=0.189  Sum_probs=83.9

Q ss_pred             CCccEEecCCCcCc-cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEE
Q 037558          370 GALEIFTVSENHFQ-GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN  448 (518)
Q Consensus       370 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  448 (518)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666665 45555566666677777777766654  5566667777777777777665566566677777777


Q ss_pred             ccCCccccC-ccccccCCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEECcC
Q 037558          449 VSMNNITGG-IPREIGNSSQLQALDLSLNHIVGEIP---KELGKLNSLTKLILRG  499 (518)
Q Consensus       449 ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~  499 (518)
                      +++|++.+. .+..+..+++|++|++++|++.+..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777777642 23566777777777777777775544   4566777777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=3.9e-16  Score=132.88  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             CCCCcEEeCCCCCCc-ccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558          106 FPRLAYLDLTGSGLF-GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL  184 (518)
Q Consensus       106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  184 (518)
                      .+++++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++++++|++|++++|.+.+.+|..+.++++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            355666666666665 45565566666666666666666533  455566666666666666654455545555556666


Q ss_pred             EccCcccccc-CCccccCCCCCcEEEcccCcCCCCcc---hhccCCCCCcEEEc
Q 037558          185 FIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFSGPIP---LFFGNLSNLKSLYL  234 (518)
Q Consensus       185 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l  234 (518)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            6666555542 22445555555555555555554333   24444555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=3.6e-15  Score=130.83  Aligned_cols=114  Identities=23%  Similarity=0.233  Sum_probs=59.1

Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL  473 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  473 (518)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            44555555555555444444455555555555555555444444455555555555555555444444455555555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558          474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS  507 (518)
Q Consensus       474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip  507 (518)
                      ++|++.+..+..+..+++|++|++++|++.+..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            5555554333334555555555555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.4e-15  Score=132.07  Aligned_cols=127  Identities=18%  Similarity=0.200  Sum_probs=75.2

Q ss_pred             cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558          349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN  428 (518)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  428 (518)
                      +.+++++|.+.. +|..+.  ++++.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            456666665553 332221  35666666666665 45556666666666666666666555556666666666666666


Q ss_pred             ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      ++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666555555666666666666666666444444556666666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=5.1e-14  Score=140.12  Aligned_cols=328  Identities=11%  Similarity=0.048  Sum_probs=169.5

Q ss_pred             CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558          148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS  227 (518)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  227 (518)
                      ..+|.++.+|+.+.+..+ +...-..+|.++++|+.+++.++ +.......|.++.+|+.+.+..+ +.......|..+.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            345667777777777543 44333455666777777776543 33334445566666665544432 2222223333332


Q ss_pred             CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558          228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN  307 (518)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  307 (518)
                      .++......  .......+|.++                        ++|+.+.+.++. .......|.++++|+.+.+.
T Consensus       141 ~~~~~~~~~--~~~i~~~aF~~c------------------------~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          141 FKEITIPEG--VTVIGDEAFATC------------------------ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLP  193 (394)
T ss_dssp             CSEEECCTT--CCEECTTTTTTC------------------------TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccCcc--ccccchhhhccc------------------------CCCcEEecCCcc-ceeccccccCCCCceEEEcC
Confidence            222211111  111122334444                        444444444332 11223344445555555544


Q ss_pred             CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558          308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP  387 (518)
Q Consensus       308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  387 (518)
                      .+ +.......+..+..|+.+.+..+... .....+....++.+.+... +.......+..+..++.+.+..+... ...
T Consensus       194 ~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          194 RN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred             CC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec
Confidence            33 22222334445555555544433221 1111222244555554322 22222334555666777766655332 334


Q ss_pred             hhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCC
Q 037558          388 TSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ  467 (518)
Q Consensus       388 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  467 (518)
                      ..+..+..++.+......+.   ...+..+.+|+.+.+.++ +.......|.+|.+|+.+++.++ ++..-..+|.+|.+
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            45666677777666554432   345667777777777654 44344556777777887777644 44333456777788


Q ss_pred             CCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558          468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE  517 (518)
Q Consensus       468 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~  517 (518)
                      |+.+++..+ +..+...+|.+|++|+.+++..+  ...+..++.++++|+
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~  391 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFK  391 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEE
T ss_pred             CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCc
Confidence            888877666 55555667777888888877644  234455666666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=1.8e-13  Score=136.09  Aligned_cols=155  Identities=10%  Similarity=0.009  Sum_probs=77.2

Q ss_pred             CCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCC
Q 037558           99 HGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL  178 (518)
Q Consensus        99 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l  178 (518)
                      ....|.++.+|+++.+..+ +...-..+|..+.+|+.+++.++ ++..-...|.++.+|+.+.+..+ +...-..+|.++
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            3336777778888887643 44334456777777777777644 33233445666777766655433 222223344444


Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeC
Q 037558          179 SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQL  258 (518)
Q Consensus       179 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  258 (518)
                      ..++.......  .......|.++++|+.+.+.++. .......|..+.+|+.+.+..+ +......+|.++..|+.+.+
T Consensus       140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            33222222211  11223345556666666654432 2233344555555555555443 33333344445555554444


Q ss_pred             cC
Q 037558          259 NE  260 (518)
Q Consensus       259 ~~  260 (518)
                      ..
T Consensus       216 ~~  217 (394)
T 4fs7_A          216 PN  217 (394)
T ss_dssp             CT
T ss_pred             CC
Confidence            33

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.9e-14  Score=126.23  Aligned_cols=136  Identities=17%  Similarity=0.219  Sum_probs=93.8

Q ss_pred             CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558           69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP  148 (518)
Q Consensus        69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  148 (518)
                      ..|.|.++.|...           ++. .+|.   ...++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus         5 C~C~~~~l~~~~~-----------~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            5 CSCSGTEIRCNSK-----------GLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             CEEETTEEECCSS-----------CCS-SCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CEeCCCEEEecCC-----------CCc-cCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence            3467888777532           222 1222   223678888888888876666667788888888888888875555


Q ss_pred             ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc
Q 037558          149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPI  219 (518)
Q Consensus       149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  219 (518)
                      ..++++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            55677888888888888877655555677777777777777777655555666777777777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=2.1e-13  Score=135.22  Aligned_cols=240  Identities=13%  Similarity=0.079  Sum_probs=119.4

Q ss_pred             CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558          228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN  307 (518)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  307 (518)
                      +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+..|.++++|+.+++.+|.++......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555555433 333333444443 455555543 34433444555566666666666555533333333 4566666665


Q ss_pred             CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558          308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP  387 (518)
Q Consensus       308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  387 (518)
                      .+ +.......|.++++|+.+.+..+ ++..-...|....|+.+.+. +.+...-..                       
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~-----------------------  265 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASR-----------------------  265 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTT-----------------------
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChh-----------------------
Confidence            33 44344455666666666666543 22222223333444444442 222222233                       


Q ss_pred             hhhhcCCCCcEEEcccCccc-----cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558          388 TSVRNCTSLIRVHLNGNNLT-----GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI  462 (518)
Q Consensus       388 ~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  462 (518)
                       .|..|++|+.+.+.++.+.     .....+|.+|++|+.+++.+ .+.......|.+|++|+.+.+..+ +......+|
T Consensus       266 -aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          266 -AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             -TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             -HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence             3444444444444444332     23344555666666666653 344344455666666666666443 443334456


Q ss_pred             cCCCCCCEEeCcCCcCcccCCccccCCC-CCCEEECcCCc
Q 037558          463 GNSSQLQALDLSLNHIVGEIPKELGKLN-SLTKLILRGNQ  501 (518)
Q Consensus       463 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~  501 (518)
                      .++ +|+.+++++|.+.......+.+++ .++.|.+..+.
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            666 666666666655544445555553 55666655544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=127.79  Aligned_cols=126  Identities=22%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      +.++++++.+. .+|..+  .++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35666666553 344333  245666666666665 45555566666666666666665444455555555555555555


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcC
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  239 (518)
                      .+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55555555555555555555555555543333444555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=6e-13  Score=131.94  Aligned_cols=252  Identities=15%  Similarity=0.154  Sum_probs=162.1

Q ss_pred             CCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558          226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD  305 (518)
Q Consensus       226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  305 (518)
                      +..++.+.+.. .++.....+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.+ .+....+.+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            35555565543 2344344455553 4666665443 33333334444 2455555554 23333334455555555555


Q ss_pred             ccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc
Q 037558          306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT  385 (518)
Q Consensus       306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  385 (518)
                      +.+|.+...                        ....+....|+.+.+..+ +...-...|.++.+|+.+++.++ ++..
T Consensus       187 l~~n~l~~I------------------------~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I  240 (401)
T 4fdw_A          187 LSKTKITKL------------------------PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI  240 (401)
T ss_dssp             CTTSCCSEE------------------------CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred             cCCCcceEe------------------------chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence            555544422                        222333344555555422 44444556777888888888765 3433


Q ss_pred             cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccc-----cccCccccCCCCCCEEEccCCccccCccc
Q 037558          386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-----GEISSNWGKCPKLDTLNVSMNNITGGIPR  460 (518)
Q Consensus       386 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  460 (518)
                      -...|.. .+|+.+.+. +.++.....+|.++++|+.+++.++.+.     ...+..|.+|++|+.+++.+ .+...-..
T Consensus       241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~  317 (401)
T 4fdw_A          241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG  317 (401)
T ss_dssp             CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred             ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence            3445555 789999994 5567677789999999999999998775     35567899999999999995 47655567


Q ss_pred             cccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccC
Q 037558          461 EIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC  513 (518)
Q Consensus       461 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l  513 (518)
                      .|.+|++|+.+++..+ +..+...+|.++ +|+.+++.+|....-.+..+..+
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            8999999999999665 666777889999 99999999998765444455555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.3e-14  Score=127.14  Aligned_cols=134  Identities=10%  Similarity=0.056  Sum_probs=95.0

Q ss_pred             hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558          366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD  445 (518)
Q Consensus       366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  445 (518)
                      +..+.+|+.|++++|.+. .++......++|++|++++|++++.  ..+..+++|++|++++|++++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            344556777777777766 3343333334788888888887764  5677778888888888888755445557788888


Q ss_pred             EEEccCCccccCccc--cccCCCCCCEEeCcCCcCcccCCcc----ccCCCCCCEEECcCCcccc
Q 037558          446 TLNVSMNNITGGIPR--EIGNSSQLQALDLSLNHIVGEIPKE----LGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       446 ~L~ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~~  504 (518)
                      +|++++|++. .+|.  .+..+++|+.|++++|++. .+|..    +..+++|++||+++|....
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8888888886 4554  6777888888888888887 44553    7788888888888887643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.9e-14  Score=122.49  Aligned_cols=61  Identities=16%  Similarity=0.167  Sum_probs=25.5

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCC-CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCC
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN  168 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~  168 (518)
                      ..+++|++|++++|.+.. ++. +..+. +|++|++++|.+++.  ..++++++|++|++++|.+.
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence            344445555555554432 222 22222 444444444444422  33444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=6.6e-16  Score=138.24  Aligned_cols=133  Identities=23%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             hhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCC
Q 037558          365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL  444 (518)
Q Consensus       365 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  444 (518)
                      .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+. | .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence            67777888888888888775 56 7778888888888888887 4566667778888888888888753 3 46778888


Q ss_pred             CEEEccCCccccCcc-ccccCCCCCCEEeCcCCcCcccCCcc----------ccCCCCCCEEECcCCcccc
Q 037558          445 DTLNVSMNNITGGIP-REIGNSSQLQALDLSLNHIVGEIPKE----------LGKLNSLTKLILRGNQRAV  504 (518)
Q Consensus       445 ~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~l~~n~~~~  504 (518)
                      ++|++++|++.+..+ ..+..+++|++|++++|++.+..|..          +..+++|+.||  +|++..
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            888888888874222 46778888888888888887665542          67788888886  666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=5.7e-16  Score=138.68  Aligned_cols=146  Identities=24%  Similarity=0.266  Sum_probs=120.6

Q ss_pred             cCCCCccEEecCCCcCccccCh------hhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccC
Q 037558          367 CQGGALEIFTVSENHFQGTIPT------SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK  440 (518)
Q Consensus       367 ~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  440 (518)
                      .....++.++++.+.+.|..|.      .+..+++|++|++++|++++ ++ .+..+++|++|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344566666666666666655      89999999999999999997 55 8899999999999999998 56777777


Q ss_pred             CCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEECcCCccccccCcc----------
Q 037558          441 CPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQRAVTLSFI----------  509 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ip~~----------  509 (518)
                      +++|++|++++|++.+ +| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            8999999999999995 55 68889999999999999985432 47889999999999999998887753          


Q ss_pred             CccCCCCC
Q 037558          510 NKVCSSLE  517 (518)
Q Consensus       510 l~~l~~L~  517 (518)
                      +..++.|+
T Consensus       170 ~~~l~~L~  177 (198)
T 1ds9_A          170 VKRLPNLK  177 (198)
T ss_dssp             HHHCSSCS
T ss_pred             HHhCCCcE
Confidence            56666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=5.2e-13  Score=116.02  Aligned_cols=107  Identities=19%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558          372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM  451 (518)
Q Consensus       372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~  451 (518)
                      .+.+++++|.++ .+|..+  .++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            457778887776 455544  36777788888877777777777777777777777777766666667777777777777


Q ss_pred             CccccCccccccCCCCCCEEeCcCCcCccc
Q 037558          452 NNITGGIPREIGNSSQLQALDLSLNHIVGE  481 (518)
Q Consensus       452 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  481 (518)
                      |++.+..+..|..+++|++|+|++|++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777755555677777777777777777643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.4e-12  Score=113.77  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             cEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCC
Q 037558          373 EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN  452 (518)
Q Consensus       373 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n  452 (518)
                      +.+++++|.+. .+|..+.  ++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57888888876 5666553  78888888888888777888888888888888888888665666777888888888888


Q ss_pred             ccccCccccccCCCCCCEEeCcCCcCcc
Q 037558          453 NITGGIPREIGNSSQLQALDLSLNHIVG  480 (518)
Q Consensus       453 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~  480 (518)
                      ++.+..+..|..+++|+.|++++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8885555557788888888888888763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=7e-11  Score=117.39  Aligned_cols=331  Identities=11%  Similarity=0.086  Sum_probs=175.5

Q ss_pred             CccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcc---ccccCCccccCCCCCcEEEcccCcCCCCcchhc
Q 037558          148 PPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNL---FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF  223 (518)
Q Consensus       148 p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  223 (518)
                      ...|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ ++......|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            34466664 5788777643 443445667777788887776653   44444555666777776665543 333344456


Q ss_pred             cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558          224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV  303 (518)
Q Consensus       224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  303 (518)
                      ..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|. ..+|+.+.+..+.. ......+..+.+++.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~  209 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALST  209 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccce
Confidence            66666777666532 33333455566666666666543 2222222332 24566666554322 233344555555555


Q ss_pred             EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558          304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ  383 (518)
Q Consensus       304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  383 (518)
                      ...............+........-..          .......+..+.+. +.+...-...|.++..|+.+.+.++...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~  278 (394)
T 4gt6_A          210 ITSDSESYPAIDNVLYEKSANGDYALI----------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS  278 (394)
T ss_dssp             EEECCSSSCBSSSCEEEECTTSCEEEE----------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred             ecccccccccccceeeccccccccccc----------ccccccccceEEcC-CcceEcccceeeecccccEEecccccce
Confidence            554433322110000000000000000          00000122223222 1122233446677778888887665432


Q ss_pred             cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558          384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG  463 (518)
Q Consensus       384 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  463 (518)
                       .....|..+++|+.+.+. +.++.....+|.++.+|+.++|.++ ++......|.+|.+|+.+.+..+ ++..-..+|.
T Consensus       279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~  354 (394)
T 4gt6_A          279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS  354 (394)
T ss_dssp             -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred             -ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence             344566778888888885 3455555677888888888888754 44445667888888888888654 5544456788


Q ss_pred             CCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558          464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       464 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      +|.+|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       355 ~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          355 NCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            88888888888775431   3566677788877766544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=2.6e-12  Score=111.54  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      ++++++++.+.. +|..+  .++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            455666655532 34333  255555555555555444555555555555555555555433334455555555555555


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCC
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFS  216 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  216 (518)
                      .+++..+..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555444444455555555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=4.3e-12  Score=110.55  Aligned_cols=104  Identities=17%  Similarity=0.306  Sum_probs=57.6

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      +.++++++.+ +.+|..+.  ++|++|++++|.+++..|..|+++++|++|+|++|.+.+..+..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4566666665 34444432  55666666666666555555666666666666666665433333455555555555555


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCC
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFS  216 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  216 (518)
                      ++.+..+..+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555444444555555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=3.7e-13  Score=132.18  Aligned_cols=183  Identities=18%  Similarity=0.195  Sum_probs=115.0

Q ss_pred             CCCCCeeecccccccccCCccc----c-c-ccCcEEEccCccCcccCchhh-cCCCCccEEecCCCcCccccChhh----
Q 037558          322 LTNLKELALLYNHLSGSIPPSL----G-N-LILRELLLSGNHFAGYLPYNI-CQGGALEIFTVSENHFQGTIPTSV----  390 (518)
Q Consensus       322 l~~L~~L~l~~n~l~~~~p~~~----~-~-~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~----  390 (518)
                      .+.|+.|++++|.++......+    . . ..|+.|++++|.+.......+ ..+++|+.|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578888888888764322221    1 1 478888888888765433222 234578888888887765433333    


Q ss_pred             -hcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccC----
Q 037558          391 -RNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGG----  457 (518)
Q Consensus       391 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~----  457 (518)
                       ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.+.+.    +...+...++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2357788888888887643    344556778888888888887643    244556677888888888888652    


Q ss_pred             ccccccCCCCCCEEeCcCCcCcccCCccccCC---C--CCCEEE--CcCCcccc
Q 037558          458 IPREIGNSSQLQALDLSLNHIVGEIPKELGKL---N--SLTKLI--LRGNQRAV  504 (518)
Q Consensus       458 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~--~L~~L~--l~~n~~~~  504 (518)
                      ++..+...++|++|+|++|++.+.....+..+   .  .|+.+.  +.+|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            33444566788888888888876555544332   1  166666  66666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=1.1e-09  Score=108.78  Aligned_cols=311  Identities=13%  Similarity=0.135  Sum_probs=206.1

Q ss_pred             CcCCcCCC-CCCEEEccCccccccCCccccCCCCCcEEEcccCc---CCCCcchhccCCCCCcEEEcccCcCCccccccc
Q 037558          172 PPSLGNLS-HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ---FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL  247 (518)
Q Consensus       172 p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  247 (518)
                      ..+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ ++.....+|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            45677764 5899988754 565667788899999999988764   44445567888888888777644 455455677


Q ss_pred             cCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558          248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE  327 (518)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  327 (518)
                      ..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ +...-..+|. ...|+.+.+..+... .....+..+.+++.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~  209 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALST  209 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccce
Confidence            88888888888643 33344556777888888888765 3323334444 356888877655433 44456677777777


Q ss_pred             eecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccc
Q 037558          328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT  407 (518)
Q Consensus       328 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  407 (518)
                      ......... .....+..         .+.........+.....+..+.+.+. +...-...|..+..|+.+.+.++...
T Consensus       210 ~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~  278 (394)
T 4gt6_A          210 ITSDSESYP-AIDNVLYE---------KSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS  278 (394)
T ss_dssp             EEECCSSSC-BSSSCEEE---------ECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred             ecccccccc-cccceeec---------ccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce
Confidence            766554332 11111111         00000000001122234444544432 22233456788999999999776443


Q ss_pred             cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcccc
Q 037558          408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELG  487 (518)
Q Consensus       408 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  487 (518)
                       ....++.++++|+.+.+. +.+.......|.+|.+|+.+++.++ ++..-..+|.+|.+|+.+.+..+ +..+...+|.
T Consensus       279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~  354 (394)
T 4gt6_A          279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS  354 (394)
T ss_dssp             -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred             -ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence             556788999999999996 4455456678999999999999865 55344567999999999999755 6656677899


Q ss_pred             CCCCCCEEECcCCccc
Q 037558          488 KLNSLTKLILRGNQRA  503 (518)
Q Consensus       488 ~l~~L~~L~l~~n~~~  503 (518)
                      +|++|+.+++.++...
T Consensus       355 ~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          355 NCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TCTTCCEEEESSCHHH
T ss_pred             CCCCCCEEEECCceee
Confidence            9999999999988653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=4.6e-13  Score=131.47  Aligned_cols=134  Identities=13%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             cCcEEEccCccCcccCchhh-----cCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccc----cChh
Q 037558          347 ILRELLLSGNHFAGYLPYNI-----CQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEA  413 (518)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~  413 (518)
                      +++.|++++|.+.......+     ...++|+.|++++|.+++.    ++..+..+++|++|+|++|++++.    +...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            34455555554443322222     2345677777777776532    334446677888888888887753    2455


Q ss_pred             hhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccCccccccCC---CC--CCEEe--CcCCcCcc
Q 037558          414 LAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIGNS---SQ--LQALD--LSLNHIVG  480 (518)
Q Consensus       414 l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l---~~--L~~L~--L~~n~l~~  480 (518)
                      +...++|++|+|++|.+++.    +...+..+++|++|++++|.+.+.....+..+   ..  |+.+.  +..+.+..
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            66777888888888888653    23344556788888888888875444434322   21  66666  66666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.1e-10  Score=113.96  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             EEecCCC-cCccccChhhhcCCCCcEEEccc-CccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558          374 IFTVSEN-HFQGTIPTSVRNCTSLIRVHLNG-NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM  451 (518)
Q Consensus       374 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~  451 (518)
                      .++++++ .++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4678887 787 5777 88899999999996 999988888899999999999999999988888899999999999999


Q ss_pred             CccccCccccccCCCCCCEEeCcCCcCcc
Q 037558          452 NNITGGIPREIGNSSQLQALDLSLNHIVG  480 (518)
Q Consensus       452 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  480 (518)
                      |++.+..+..+..++ |+.|+|.+|++..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999865555566555 9999999998873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.7e-10  Score=112.58  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             cEEEccCc-cCcccCchhhcCCCCccEEecCC-CcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecc
Q 037558          349 RELLLSGN-HFAGYLPYNICQGGALEIFTVSE-NHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS  426 (518)
Q Consensus       349 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  426 (518)
                      ..++.+++ .+.+ +|. +..+.+|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35677877 6665 676 88889999999996 99998777889999999999999999999999999999999999999


Q ss_pred             cCccccccCccccCCCCCCEEEccCCcccc
Q 037558          427 RNNFYGEISSNWGKCPKLDTLNVSMNNITG  456 (518)
Q Consensus       427 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  456 (518)
                      +|++.+..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999976666666665 9999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.11  E-value=1.8e-08  Score=99.32  Aligned_cols=142  Identities=12%  Similarity=0.079  Sum_probs=87.9

Q ss_pred             ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEec
Q 037558          346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDL  425 (518)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  425 (518)
                      ..++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +......+|.++++|+.+.+
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            44555555432 23333445566677777777654 33333455667777777777543 44445567777788888888


Q ss_pred             ccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCC
Q 037558          426 SRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSL  492 (518)
Q Consensus       426 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  492 (518)
                      .++.+.......|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+..+ +..+...+|.++..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            777776555667777888888888654 44333456777888888777654 444445566665433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=1.7e-07  Score=92.34  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCC
Q 037558          364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK  443 (518)
Q Consensus       364 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  443 (518)
                      ..+.++.+|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.++.+|+.+.|..+ +.......|.+|++
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            44555666666666543 33233345667788888888777777666677888888888888654 44444567788888


Q ss_pred             CCEEEccCCccccCccccccCCC
Q 037558          444 LDTLNVSMNNITGGIPREIGNSS  466 (518)
Q Consensus       444 L~~L~ls~n~l~~~~~~~~~~l~  466 (518)
                      |+.+.+..+ ++..-..+|.+++
T Consensus       335 L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          335 LSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCEEEECCc-cCEEchhHhhCCC
Confidence            888887654 4433345566654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=2.8e-10  Score=110.70  Aligned_cols=58  Identities=12%  Similarity=0.030  Sum_probs=28.0

Q ss_pred             CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCcccc--CCCCCcEEEcc
Q 037558          151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIG--NSKSIFNLDLS  211 (518)
Q Consensus       151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~  211 (518)
                      +..+|+|+.|++++|.-. .++. +. +++|++|++..|.+.......+.  .+++|++|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            344556666666555211 1222 22 55666666665555433222222  45666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.3e-09  Score=106.12  Aligned_cols=59  Identities=25%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CCCCCEEEccCCccccC----ccccccCCCCCCEEeCcCCcCcccCCccccC-CCCCCEEECcCCc
Q 037558          441 CPKLDTLNVSMNNITGG----IPREIGNSSQLQALDLSLNHIVGEIPKELGK-LNSLTKLILRGNQ  501 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~  501 (518)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++.....+.. +  ...+++++++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45555555555555432    2222234455666666666555433333332 2  2345555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=9.1e-09  Score=90.28  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             hhhcCCCCcEEEcccC-ccccc----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccC--
Q 037558          389 SVRNCTSLIRVHLNGN-NLTGN----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGG--  457 (518)
Q Consensus       389 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~--  457 (518)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|++++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566666666666 65532    234445556677777777766532    223344456677777777777642  


Q ss_pred             --ccccccCCCCCCEEeC--cCCcCcccC----CccccCCCCCCEEECcCCccc
Q 037558          458 --IPREIGNSSQLQALDL--SLNHIVGEI----PKELGKLNSLTKLILRGNQRA  503 (518)
Q Consensus       458 --~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~  503 (518)
                        +...+...+.|++|+|  ++|.+....    ...+...+.|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3445566677777777  677776542    334445677888888877764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=5.2e-08  Score=85.43  Aligned_cols=116  Identities=11%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             hhhcCCCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc-
Q 037558          364 YNICQGGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE-  433 (518)
Q Consensus       364 ~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-  433 (518)
                      ..+...+.|+.|++++| .+...    +...+...++|++|+|++|++.+.    +...+...++|++|+|++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34555667777777777 66532    334455677888888888888753    344556667888888888888754 


Q ss_pred             ---cCccccCCCCCCEEEc--cCCccccC----ccccccCCCCCCEEeCcCCcCc
Q 037558          434 ---ISSNWGKCPKLDTLNV--SMNNITGG----IPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       434 ---~~~~~~~~~~L~~L~l--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                         +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3455667788999999  78888753    3445566788999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=4.5e-08  Score=90.24  Aligned_cols=80  Identities=29%  Similarity=0.381  Sum_probs=51.3

Q ss_pred             hCCCCCCEEecccCcccc--ccCccccCCCCCCEEEccCCccccCccccccCCC--CCCEEeCcCCcCcccCCc------
Q 037558          415 AIYPNLTFIDLSRNNFYG--EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS--QLQALDLSLNHIVGEIPK------  484 (518)
Q Consensus       415 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------  484 (518)
                      ..+++|++|+|++|++.+  .++..+..+++|+.|+|++|++.+.  ..+..+.  +|++|+|++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456677777777777765  3345555677777777777777643  2233333  777888888877765552      


Q ss_pred             -cccCCCCCCEEE
Q 037558          485 -ELGKLNSLTKLI  496 (518)
Q Consensus       485 -~l~~l~~L~~L~  496 (518)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             356677887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=2e-07  Score=85.85  Aligned_cols=82  Identities=24%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             hcCCCCcEEEcccCcccc--ccChhhhCCCCCCEEecccCccccc-cCccccCCCCCCEEEccCCccccCcc-------c
Q 037558          391 RNCTSLIRVHLNGNNLTG--NISEALAIYPNLTFIDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGGIP-------R  460 (518)
Q Consensus       391 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~-------~  460 (518)
                      ..+++|++|+|++|++++  .++..+..+++|+.|+|++|++.+. ....+..+ +|++|++++|.+.+.+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            467888889999998887  4456677888999999999988865 11223333 89999999999886554       2


Q ss_pred             cccCCCCCCEEeC
Q 037558          461 EIGNSSQLQALDL  473 (518)
Q Consensus       461 ~~~~l~~L~~L~L  473 (518)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3567888888863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=2.1e-07  Score=79.48  Aligned_cols=85  Identities=8%  Similarity=-0.043  Sum_probs=55.2

Q ss_pred             CCCCcEEEcccCccccccChhhhCCCCCCEEecccCc-cccccCccccCC----CCCCEEEccCCc-cccCccccccCCC
Q 037558          393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN-FYGEISSNWGKC----PKLDTLNVSMNN-ITGGIPREIGNSS  466 (518)
Q Consensus       393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~ls~n~-l~~~~~~~~~~l~  466 (518)
                      -..|+.|++++|.+++.-...+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.--..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3567888888888776655666777777777777774 554433334432    467777777764 5544444456677


Q ss_pred             CCCEEeCcCCc
Q 037558          467 QLQALDLSLNH  477 (518)
Q Consensus       467 ~L~~L~L~~n~  477 (518)
                      +|+.|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=3.8e-07  Score=77.91  Aligned_cols=84  Identities=7%  Similarity=-0.003  Sum_probs=45.5

Q ss_pred             CCccEEecCCCcCccccChhhhcCCCCcEEEcccCc-cccccChhhhCC----CCCCEEecccCc-cccccCccccCCCC
Q 037558          370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNN-LTGNISEALAIY----PNLTFIDLSRNN-FYGEISSNWGKCPK  443 (518)
Q Consensus       370 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~~  443 (518)
                      .+|+.|++++|.++..-...+..+++|++|+|++|. +++.-...+..+    ++|++|+|++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666665554444445556666666666663 554433444442    356666666653 54433334455566


Q ss_pred             CCEEEccCCc
Q 037558          444 LDTLNVSMNN  453 (518)
Q Consensus       444 L~~L~ls~n~  453 (518)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.53  E-value=5e-05  Score=66.07  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             CCCCcEEEcccC-ccccc----cChhhhCCCCCCEEecccCcccccc----CccccCCCCCCEEEccCCccccC----cc
Q 037558          393 CTSLIRVHLNGN-NLTGN----ISEALAIYPNLTFIDLSRNNFYGEI----SSNWGKCPKLDTLNVSMNNITGG----IP  459 (518)
Q Consensus       393 l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~----~~  459 (518)
                      -+.|+.|+|+++ +|.+.    +.+.+..-..|+.|+|++|++....    ...+..-+.|++|+|+.|.|.+.    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            344555555543 44421    2334444455555555555554321    22233345566666666665532    22


Q ss_pred             ccccCCCCCCEEeCcCC---cCcc----cCCccccCCCCCCEEECcCCcc
Q 037558          460 REIGNSSQLQALDLSLN---HIVG----EIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       460 ~~~~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      ..+..-+.|++|+|++|   .+..    .+...+..-+.|++|+++.|..
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            33444455666666544   2222    1223344456666666665553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=0.00015  Score=63.03  Aligned_cols=112  Identities=10%  Similarity=0.165  Sum_probs=69.8

Q ss_pred             cCCCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----
Q 037558          367 CQGGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----  433 (518)
Q Consensus       367 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----  433 (518)
                      ...+.|+.|++++| .+...    +.+.+..-+.|+.|+|++|+|.+.    +.+.+..-+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33455666666664 44321    233445567788888888877744    334555667788888888887644    


Q ss_pred             cCccccCCCCCCEEEccCCc---ccc----CccccccCCCCCCEEeCcCCcC
Q 037558          434 ISSNWGKCPKLDTLNVSMNN---ITG----GIPREIGNSSQLQALDLSLNHI  478 (518)
Q Consensus       434 ~~~~~~~~~~L~~L~ls~n~---l~~----~~~~~~~~l~~L~~L~L~~n~l  478 (518)
                      +...+..-+.|++|+|++|.   +..    .+...+..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23345556678888887653   232    2344555667888888887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.22  E-value=0.009  Score=48.24  Aligned_cols=56  Identities=21%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             EEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccc
Q 037558          398 RVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT  455 (518)
Q Consensus       398 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  455 (518)
                      .++.++++++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666665 23332221  35666666666666555555566666666666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.18  E-value=0.011  Score=47.62  Aligned_cols=57  Identities=19%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             CEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558          421 TFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV  479 (518)
Q Consensus       421 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  479 (518)
                      ..++-+++.++ ..+|..+  .++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777788776 3455433  347889999999988655666788888999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 72/340 (21%), Positives = 123/340 (36%), Gaps = 39/340 (11%)

Query: 34  EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAG---RVINISLR 90
           ++   LL+ K  L   N + L SW       ++      W G+ C+      RV N+ L 
Sbjct: 6   QDKQALLQIKKDLG--NPTTLSSW-----LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 91  NTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN-KLDGSIPP 149
              L                            IP  +  L +L FL+I     L G IPP
Sbjct: 59  GLNLPKPY-----------------------PIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 150 EVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLD 209
            + +L+ +   ++    ++G++P  L  +  +  L    N  SG +P  I +  ++  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 210 LSSNQFSGPIPLFFGNLSNLKS-LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP 268
              N+ SG IP  +G+ S L + + +  N L+  I  +                      
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328
               +  +                 ++G  ++L+ LDL  N+  G LP  ++ L  L  L
Sbjct: 216 LFGSDKNT--QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 329 ALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNIC 367
            + +N+L G I P  GNL        + N      P   C
Sbjct: 274 NVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.5 bits (215), Expect = 1e-19
 Identities = 58/272 (21%), Positives = 97/272 (35%), Gaps = 4/272 (1%)

Query: 191 FSGFIPSDIGNSKSIFNLDLSSNQFSG--PIPLFFGNLSNLKSLYLYGN-SLSSPILSSL 247
           + G +      +  + NLDLS        PIP    NL  L  LY+ G  +L  PI  ++
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307
            K   L  L +     +G IP     + +L TL  S N L G++P  I  + +L  +  +
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNIC 367
            N+  G +P S  + + L     +  +      P     +    +    +        + 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 368 QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR 427
                        +        V    +L  + L  N + G + + L     L  +++S 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 428 NNFYGEISSNWGKCPKLDTLNVSMNNITGGIP 459
           NN  GEI    G   + D    + N    G P
Sbjct: 278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.3 bits (186), Expect = 8e-16
 Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 245 SSLGKFKSLIDLQLNENQFTGY--IPRSFGNLTSLSTLRLSKNE-LFGSIPDEIGKMRSL 301
            +  +   + +L L+         IP S  NL  L+ L +     L G IP  I K+  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 302 SVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAG 360
             L +      G +P  +S +  L  L   YN LSG++PPS+ +L  L  +   GN  +G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 361 YLPYNICQGGALEI-FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419
            +P +      L    T+S N   G IP +  N    +       N+    +  L     
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDK 221

Query: 420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479
            T       N         G    L+ L++  N I G +P+ +     L +L++S N++ 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 480 GEIPKELGKLNSLTKLILRGNQ 501
           GEIP + G L          N+
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNK 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (222), Expect = 1e-20
 Identities = 58/257 (22%), Positives = 98/257 (38%), Gaps = 10/257 (3%)

Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
                L L  N+ T      F NL +L TL L  N++    P     +  L  L L++NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGG 370
            K +       L  L+        +  S+   L  +I+ EL  +    +G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF 430
            L    +++ +   TIP       SL  +HL+GN +T   + +L    NL  + LS N+ 
Sbjct: 151 KLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 431 YGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI------VGEIPK 484
               + +    P L  L+++ N +   +P  + +   +Q + L  N+I          P 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 485 ELGKLNSLTKLILRGNQ 501
              K  S + + L  N 
Sbjct: 267 YNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.2 bits (217), Expect = 6e-20
 Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 14/268 (5%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P D+        LDL +N+ +      F NL NL +L L  N +S     +      L 
Sbjct: 25  VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
            L L++NQ      +    L  L        ++  S+ + + +M  +  L  N  +  G+
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGI 141

Query: 315 LPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEI 374
              +   +  L  + +   +++ +IP  L    L EL L GN        ++     L  
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 375 FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI 434
             +S N        S+ N   L  +HLN N L             +  + L  NN    I
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK-YIQVVYLHNNNI-SAI 257

Query: 435 SSNW-------GKCPKLDTLNVSMNNIT 455
            SN         K      +++  N + 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 52/286 (18%), Positives = 94/286 (32%), Gaps = 13/286 (4%)

Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF 222
           CS+     VP  L      +LL + +N  +     D  N K++  L L +N+ S   P  
Sbjct: 17  CSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
           F  L  L+ LYL  N L           + L   +    +    +      +  +  L  
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGT 133

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
           +  +  G        M+ LS + + +     +         +L EL L  N ++     S
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAAS 190

Query: 343 LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
           L  L     L    +    +                 N+    +P  + +   +  V+L+
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 403 GNNLTGNISEA------LAIYPNLTFIDLSRNNF-YGEISSNWGKC 441
            NN++   S             + + + L  N   Y EI  +  +C
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.9 bits (193), Expect = 7e-17
 Identities = 51/291 (17%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 71  CAWYGISCNDAG----------RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLF 120
           C    + C+D G              + L+N  ++  +    F +   L  L L  + + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS 68

Query: 121 GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSH 180
              P     L  L+ L++  N+L   +P ++ +  +++   +  N +          L+ 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQ 125

Query: 181 ISLLFIYD--NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS 238
           + ++ +       SG         K +  + ++    +    +  G   +L  L+L GN 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNK 182

Query: 239 LSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKM 298
           ++    +SL    +L  L L+ N  +     S  N   L  L L+ N+L   +P  +   
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 241

Query: 299 RSLSVLDLNENQFKGV------LPPSISNLTNLKELALLYNHLS-GSIPPS 342
           + + V+ L+ N    +       P   +   +   ++L  N +    I PS
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 4e-15
 Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 26/282 (9%)

Query: 128 GLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187
            L      L +  NK+      +   L ++    L +N ++   P +   L  +  L++ 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG--NSLSSPILS 245
            N             +    L +  N+ +      F  L+ +  + L       S     
Sbjct: 88  KNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
           +    K L  +++ +   T       G   SL+ L L  N++       +  + +L+ L 
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYN 365
           L+ N    V   S++N  +L+EL L  N L         +  ++ + L  N+ +      
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS------ 255

Query: 366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407
                      +  N F    P       S   V L  N + 
Sbjct: 256 ----------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 31/228 (13%)

Query: 290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-L 348
            +P ++      ++LDL  N+   +      NL NL  L L+ N +S   P +   L+ L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
             L LS N               L +        + ++  +  N   ++ +  N    +G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSG 140

Query: 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
             + A      L++I ++  N                        I  G+P        L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNI---------------------TTIPQGLP------PSL 173

Query: 469 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSL 516
             L L  N I       L  LN+L KL L  N  +   +        L
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 12/190 (6%)

Query: 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160
           F+  +   +  L        G        +  L ++ I    +  +IP   G   S+   
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTEL 176

Query: 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP 220
            L  N +      SL  L++++ L +  N  S      + N+  +  L L++N+    +P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235

Query: 221 LFFGNLSNLKSLYLYGNSLSS------PILSSLGKFKSLIDLQLNEN--QFTGYIPRSFG 272
               +   ++ +YL+ N++S+             K  S   + L  N  Q+    P +F 
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

Query: 273 NLTSLSTLRL 282
            +   + ++L
Sbjct: 296 CVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 2e-18
 Identities = 59/287 (20%), Positives = 106/287 (36%), Gaps = 30/287 (10%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
           +P  I    +   + L  N+ S      F    NL  L+L+ N L+    ++      L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 255 DLQLNENQFTGYI-PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313
            L L++N     + P +F  L  L TL L +  L    P     + +L  L L +N  + 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALE 373
           +   +  +L NL  L L  N +S     +   L                        +L+
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-----------------------SLD 180

Query: 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE 433
              + +N      P + R+   L+ ++L  NNL+   +EALA    L ++ L+ N +  +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 434 ISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG 480
             +       L     S + +   +P+ +          L+ N + G
Sbjct: 241 CRARPLW-AWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 5e-16
 Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 7/274 (2%)

Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
                 GL   +P   G+ +  + +F+  N++            ++ + +L SN L    
Sbjct: 16  TSCPQQGL-QAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 172 PPSLGNLSHISLLFIYDNLFSGFI-PSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK 230
             +   L+ +  L + DN     + P+       +  L L         P  F  L+ L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290
            LYL  N+L +    +     +L  L L+ N+ +    R+F  L SL  L L +N +   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRE 350
            P     +  L  L L  N    +   +++ L  L+ L L  N              L++
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
              S +     LP  +      ++  ++ N  QG
Sbjct: 253 FRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 5/237 (2%)

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
           +P       +   + L  N +           R+L++L L+ N    +   + + L  L+
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 327 ELALLYNHLSGSIPPSL--GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
           +L L  N    S+ P+   G   L  L L         P       AL+   + +N  Q 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
               + R+  +L  + L+GN ++     A     +L  + L +N         +    +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 445 DTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            TL +  NN++      +     LQ L L+ N  V +          L K     ++
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSE 259

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 4/245 (1%)

Query: 45  SLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFS 104
            +     +   +    T               +      +  + L +     ++   +F 
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS 164
              RL  L L   GL    P     L+ L++L++  N L          L ++   FL  
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFG 224
           N ++     +   L  +  L ++ N  +   P    +   +  L L +N  S        
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 225 NLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSK 284
            L  L+ L L  N        +   +  L   + + ++    +P+           RL+ 
Sbjct: 223 PLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAA 278

Query: 285 NELFG 289
           N+L G
Sbjct: 279 NDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 5e-17
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 17/206 (8%)

Query: 152 GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211
            +L+++E     +N ++   P     L+++  L +  N         + +  ++ +LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSF 271
           +NQ S   P     L+ L  L L  N +S+    +     + ++L  N+ +    I    
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS--- 304

Query: 272 GNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331
            NL +L+ L L  N +    P  +  +  L  L    N+       S++NLTN+  L+  
Sbjct: 305 -NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 332 YNHLSGSIPPSLGNLI-LRELLLSGN 356
           +N +S   P  L NL  + +L L+  
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 71/393 (18%), Positives = 140/393 (35%), Gaps = 33/393 (8%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
            +   L  T ++ T+   S +   ++  L     G+       V  L++L  +    N+L
Sbjct: 24  KMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 78

Query: 144 DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
               P  +  L+ +         +  +           +L  +          +DI   K
Sbjct: 79  TDITP--LKNLTKLV-------DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
           ++ NL+      +    +   +         +GN ++     +       +D+  N+   
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT 323
                     LT+L +L  + N++    P  I  + +L  L LN NQ K     ++++LT
Sbjct: 190 ISV----LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLT 241

Query: 324 NLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
           NL +L L  N +S   P S G   L EL L  N  +   P          +  +  N  Q
Sbjct: 242 NLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLT----ALTNLELNENQ 296

Query: 384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443
               + + N  +L  + L  NN++      ++    L  +  + N       S+      
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTN 352

Query: 444 LDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476
           ++ L+   N I+   P  + N +++  L L+  
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 3e-15
 Identities = 52/230 (22%), Positives = 78/230 (33%), Gaps = 39/230 (16%)

Query: 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELAL 330
              LT+L +L  + N++    P  I  + +L  L LN NQ K     ++++LTNL +L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 331 LYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV 390
             N +S   P S G   L EL L  N  +   P              ++      I    
Sbjct: 249 ANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS--- 304

Query: 391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVS 450
                                       NLT++ L  NN             KL  L  +
Sbjct: 305 -------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 451 MNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
            N ++      + N + +  L    N I    P  L  L  +T+L L   
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 6e-12
 Identities = 62/343 (18%), Positives = 114/343 (33%), Gaps = 30/343 (8%)

Query: 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKS 231
             S  +L  ++ L              +    ++  ++ S+NQ +   P    NL+ L  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG---------NLTSLSTLRL 282
           + +  N ++     +     + + L  N+      +               ++ +S L  
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI----SNLTNLKELALLYNHLSGS 338
             +    S  +++  ++ L+ L   E         S     + LTNL+ L    N +S  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD- 211

Query: 339 IPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR 398
           I P      L EL L+GN         +     L    ++ N      P S    T L  
Sbjct: 212 ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTE 267

Query: 399 VHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI 458
           + L  N ++        +       +L  N    E  S       L  L +  NNI+   
Sbjct: 268 LKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 459 PREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
           P  + + ++LQ L  + N +       L  L ++  L    NQ
Sbjct: 324 P--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 4e-11
 Identities = 62/327 (18%), Positives = 104/327 (31%), Gaps = 44/327 (13%)

Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
              L     +  +     +L  + +L      + S  +  +    +L  +  + NQ T  
Sbjct: 26  KTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPP--------- 317
            P    NLT L  + ++ N++    P       +   L  N+      L           
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 318 ---SISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEI 374
              +IS+++ L  L  L     G+    L  L     L   +  +  +           +
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 375 FTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI 434
            ++   + Q +  T +   T+L  + LNGN L       LA   NLT +DL+ N      
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 435 SSNWGKCPKLDTLNVSMNNITGGIP--------------------REIGNSSQLQALDLS 474
                   KL  L +  N I+   P                      I N   L  L L 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 475 LNHIVGEIPKELGKLNSLTKLILRGNQ 501
            N+I    P  +  L  L +L    N+
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNK 340

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 24/243 (9%)

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
            L       L K  +  ++      +  ++ L  +    K +    +  L NL ++    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 333 NHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR 391
           N L+   P  L NL  L ++L++ N  A   P              ++      +     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 392 NCT------SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN-------W 438
                    ++  +       +           +L  +         +ISSN        
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 439 GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 498
            K   L++L  + N I+   P  I  +  L  L L+ N +       L  L +LT L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 499 GNQ 501
            NQ
Sbjct: 250 NNQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 30/231 (12%)

Query: 270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA 329
               + S   +   K  L  ++P ++ K    ++L L+EN        ++   T L +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTS 389
           L                                   +     +       ++   ++P  
Sbjct: 62  LDRAE--------------------------LTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95

Query: 390 VRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
            +   +L  + ++ N LT     AL     L  + L  N             PKL+ L++
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 450 SMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 500
           + NN+T      +     L  L L  N +   IPK     + L    L GN
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 6/208 (2%)

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
              +++   +     +L++ +   L K      L L+EN    +   +    T L+ L L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS 342
            + EL        G +  L  LDL+ NQ + +     +               S  +   
Sbjct: 63  DRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 343 LGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
            G   L+EL L GN      P  +     LE  +++ N+        +    +L  + L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNF 430
            N+L   I +       L F  L  N +
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 41/186 (22%), Positives = 56/186 (30%), Gaps = 25/186 (13%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS----SPILSSLGKF 250
           +P D+   K    L LS N             + L  L L    L+       L  LG  
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 251 KSLIDLQ-----------------LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD 293
               +                   ++ N+ T     +   L  L  L L  NEL    P 
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 294 EIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELL 352
            +     L  L L  N    +    ++ L NL  L L  N L  +IP        L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 353 LSGNHF 358
           L GN +
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
           ++  +L  N L    P  L     +  L + +N  +      +   +++  L L  N   
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 217 GPIPLFFGNLSNLKSLYLYGNSL 239
             IP  F     L   +L+GN  
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 439 GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 498
            K      +N    N+T  +P ++        L LS N +       L     LT+L L 
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 499 GNQ 501
             +
Sbjct: 64  RAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 43/281 (15%), Positives = 91/281 (32%), Gaps = 17/281 (6%)

Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL-F 288
           ++L L G +L   +   L   + +I  +   +     +   F +   +  + LS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348
            ++   + +   L  L L   +    +  +++  +NL  L L                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 349 RELLL---------SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV 399
             L           +  H    + +       L +    +N  +  + T VR C +L+ +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 400 HLNGN-NLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGG 457
            L+ +  L  +  +       L  + LSR      E     G+ P L TL V      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 458 IPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 498
           +         L  L ++ +H        +G   +     ++
Sbjct: 241 LQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 23/256 (8%)

Query: 268 PRSFGNLTSLST--LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV-LPPSISNLTN 324
           P   G L S      R  ++ +   +  E      +  +DL+ +  +   L   +S  + 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 325 LKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
           L+ L+L    LS  I  +L     L  L LSG                  +  ++ +   
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443
                 V+   + +   +   NL+G                  +N    ++S+   +CP 
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSG----------------YRKNLQKSDLSTLVRRCPN 176

Query: 444 LDTLNVSMN-NITGGIPREIGNSSQLQALDLS-LNHIVGEIPKELGKLNSLTKLILRGNQ 501
           L  L++S +  +     +E    + LQ L LS    I+ E   ELG++ +L  L + G  
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 502 RAVTLSFINKVCSSLE 517
              TL  + +    L+
Sbjct: 237 PDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 14/246 (5%)

Query: 87  ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGL-FGTIPPEVGLLSHLKFLFIDTNKLDG 145
           I+ R              S  R+ ++DL+ S +   T+   +   S L+ L ++  +L  
Sbjct: 26  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85

Query: 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI 205
            I   + + S++    L                S   L  +  +    F    +  + + 
Sbjct: 86  PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 145

Query: 206 FNLDLSSNQFSG---------PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDL 256
            +  ++    SG            L     + +         L +       +   L  L
Sbjct: 146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 257 QLNE-NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
            L+             G + +L TL++      G++        +L  L +N + F  + 
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK---EALPHLQINCSHFTTIA 262

Query: 316 PPSISN 321
            P+I N
Sbjct: 263 RPTIGN 268

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 18/229 (7%)

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
            L +   +   K+ +  ++      +  ++ L         +    +  L NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 333 NHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
           N ++   P            L+           +    A+      +     +   +   
Sbjct: 73  NQITDLAPLKN---------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
             + +            I+    +        LS  N      +      KL TL    N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
            I+   P  + +   L  + L  N I    P  L   ++L  + L  NQ
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 17/225 (7%)

Query: 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
             + I +   ++  T  + ++  +L  ++TL      +  +  + +  + +L  L+L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDN 73

Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG 369
           Q        + NLT + EL L  N L      +    I    L S           +   
Sbjct: 74  QITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
             L             I             +L+  N   +    LA    LT +    N 
Sbjct: 132 QVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 430 FYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS 474
                 S     P L  +++  N I+   P  + N+S L  + L+
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE 260
              +   +    +  +  +     +L  + +L  +G  +++  +  +    +LI L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS 320
           NQ          NLT ++ L LS N L         +      L   +      L    +
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 321 NLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN 380
                     LY  L+     S    +     LS  +        +     L      +N
Sbjct: 131 LQV-------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 381 HFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS 426
                 P  + +  +LI VHL  N ++      LA   NL  + L+
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 20/227 (8%)

Query: 84  VINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
            I I+   + ++ T+   + +    +  L   G+G+  T    V  L++L  L +  N++
Sbjct: 21  AIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI 75

Query: 144 DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSK 203
                  +  L+ +    L  N L      +         L          +        
Sbjct: 76  T--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA----GLS 129

Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
           ++  L L  NQ +   PL         S+     S  +P    L     L  L+ ++N+ 
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKI 185

Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
           +   P    +L +L  + L  N++    P  +    +L ++ L  NQ
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
             Y N+ S+ I S      SL +L ++ N+    +P     L     L  S N L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVP 320

Query: 293 DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
           +      +L  L +  N  +   P    ++ +L+
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 257 QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316
               N  +  I        SL  L +S N+L   +P        L  L  + N     +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHLAE-VP 320

Query: 317 PSISNLTNLKELALLYNHLSG--SIPPSLGNL 346
                  NLK+L + YN L     IP S+ +L
Sbjct: 321 EL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 380 NHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWG 439
             F           + L       N  +  I     + P+L  +++S N     +     
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK----LIELPA 301

Query: 440 KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
             P+L+ L  S N++   +P    N   L+ L +  N +  E P     +  L
Sbjct: 302 LPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE 481
                 N    EI S     P L+ LNVS N +   +P        L+ L  S NH+  E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-AE 318

Query: 482 IPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517
           +P+      +L +L +  N     L     +  S+E
Sbjct: 319 VPELPQ---NLKQLHVEYNP----LREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
              N     I        SL  L+++ N+    LP     L  L      +NHL+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLA-EVPE 321

Query: 342 SLGNLILRELLLSGNHF 358
              N  L++L +  N  
Sbjct: 322 LPQN--LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
           +       N  +  +         +  L + +N     +P+     +    L  S N  +
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLA 317

Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
             +P       NLK L++  N L       +   +S+ DL++N
Sbjct: 318 E-VP---ELPQNLKQLHVEYNPLRE--FPDI--PESVEDLRMN 352

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 202 SKSIFNLDLSSNQFS-GPIPLFFGNLSNLKSLYLYGNSLS----SPILSSLGKFKSLIDL 256
           S  I +LD+   + S          L   + + L    L+      I S+L    +L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 257 QLNENQFTGYIPRSFG-----NLTSLSTLRLS 283
            L  N+                   +  L L 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 6e-07
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 417 YPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIG-----NSSQ 467
              L  + L+  +        +++       L  L++S N +      ++          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 468 LQALDLSLNHIVGEIPKELGKL 489
           L+ L L   +   E+   L  L
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 228 NLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTG----YIPRSFGNLTSLSTLRL 282
           +++SL +    LS    + L    +    ++L++   T      I  +     +L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 283 SKNELFGSIPDEIGKM-----RSLSVLDLNENQF 311
             NEL       + +        +  L L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 10/93 (10%)

Query: 419 NLTFIDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDL 473
           ++  +D+          +       +   + +    +T      I   +  +  L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 474 SLNHIVGEIPKELGKL-----NSLTKLILRGNQ 501
             N +       + +        + KL L+   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 276 SLSTLRLSKNEL-FGSIPDEIGKMRSLSVLDLNENQFKGV----LPPSISNLTNLKELAL 330
            + +L +   EL      + +  ++   V+ L++          +  ++     L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 331 LYNHLSGSIPPSLGNLI------LRELLLSGNHF 358
             N L       +   +      +++L L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 222 FFGNLSNLKSLYLYGNSLS----SPILSSLGKFKSLIDLQLNENQFTGYIPRSFG----- 272
                S L+ L+L    +S    S + ++L    SL +L L+ N                
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMR----SLSVL 304
               L  L L        + D +  +     SL V+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 271 FGNLTSLSTLRLSKNEL----FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS-----N 321
               + L  L L+  ++      S+   +    SL  LDL+ N         +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 322 LTNLKELALLYNHLSGSIPPSLGNL 346
              L++L L   + S  +   L  L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 15/112 (13%)

Query: 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG----PIPLFFGNLSNLKSLYLYGNSLS 240
            + D                +  L L+    S      +        +L+ L L  N L 
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 241 SPILSSLGKF-----KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
              +  L +        L  L L +  ++  +         L  L   K  L
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 298 MRSLSVLDLNENQFKGV----LPPSISNLTNLKELALLYNHLSGSIPPSLGNLI------ 347
              L VL L +          L  ++    +L+EL L  N L  +    L   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 348 LRELLLSGNHF 358
           L +L+L   ++
Sbjct: 428 LEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 12/77 (15%)

Query: 386 IPTSVRNCTSLIRVHLNGNNLTG----NISEALAIYPNLTFIDLSRNNFYGEISSNWGK- 440
           +   ++ C  +    L+   LT     +IS AL + P L  ++L  N           + 
Sbjct: 22  LLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78

Query: 441 ----CPKLDTLNVSMNN 453
                 K+  L++    
Sbjct: 79  LQTPSCKIQKLSLQNCC 95

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 15/202 (7%)

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
                    L K  +  ++     ++ S+  +  N +  K V    I  L N+ +L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 333 NHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
           N L+      L NL     L    +    L          ++ ++S  H   +    + +
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLK---KLKSLSLEHNGISDINGLVH 132

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
              L  ++L  N +T     +     +         +             KL  L +S N
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLS----LEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 453 NITGGIPREIGNSSQLQALDLS 474
           +I+    R +     L  L+L 
Sbjct: 189 HISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 19/222 (8%)

Query: 209 DLSSNQFSGPIPLFF----GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264
            L S   + P P+         +      L   S++  +  +  +  S+  +  N +   
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 59

Query: 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN 324
                    L +++ L L+ N+L    P       +L  L         V   S      
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTDIKPLA-----NLKNLGWLFLDENKVKDLSSLKDLK 112

Query: 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG 384
             +   L ++    I   +    L  L L  N        +       +  ++ +N    
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISD 170

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS 426
            +P  +   T L  ++L+ N+++     ALA   NL  ++L 
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 23/217 (10%)

Query: 290 SIPDEIGKMRSLSVL------DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343
           ++P  I ++ S          +L +      +  + + L ++ ++    + +       +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--I 64

Query: 344 GNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
             L  + +L L+GN      P    +         ++     ++    +         L+
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK------SLS 118

Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
             +   +    L   P L  + L  N        +        +    + +        +
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS----LEDNQISDIVPL 174

Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 499
              ++LQ L LS NHI     + L  L +L  L L  
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 36/324 (11%), Positives = 79/324 (24%), Gaps = 29/324 (8%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGP----IPLFFGNLSNLKSLYLYGNSLSSPILSSLGKF 250
           + + +    S+  + LS N         +     +  +L+                    
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 251 KSLIDLQL---NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307
           + L+   L     +                    LSK+     +      +   +   + 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNIC 367
               +  +     N   L+ +    N L                LL              
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 368 QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR 427
                      E+     +          ++ +   +  +  ++ AL  +PNL  + L+ 
Sbjct: 203 I----------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 428 NNFYGEISSNWGKC------PKLDTLNVSMNNITGGIPREI-----GNSSQLQALDLSLN 476
                  ++             L TL +  N I     R +          L  L+L+ N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 477 HIVGEIPKELGKLNSLTKLILRGN 500
               E    + ++  +     RG 
Sbjct: 313 RF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 47/306 (15%), Positives = 97/306 (31%), Gaps = 33/306 (10%)

Query: 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG----YIPRSFGNLTSLSTLRLS 283
           +LK   +      S + + L +  S+ ++ L+ N        ++  +  +   L     S
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 284 KN----------ELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNL----TNLKELA 329
                       E    +   + K   L  + L++N F       + +     T L+ L 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVS---ENHFQGTI 386
           L  N L       +   +    +      A  L   IC    LE  ++    +      +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT 446
             +V+   + IR     + L   ++    +       +   +     ++      P L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 447 LNVSMNNITGGIPREIGN------SSQLQALDLSLNHIVGEIPKEL-----GKLNSLTKL 495
           L ++   ++      + +      +  LQ L L  N I  +  + L      K+  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 496 ILRGNQ 501
            L GN+
Sbjct: 308 ELNGNR 313

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
           L L+    +    L    L  +  L L  N L +    +L   + L  LQ ++N      
Sbjct: 3   LHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNAL--EN 57

Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQF---KGVLPPSISNLT 323
                NL  L  L L  N L   +    +     L +L+L  N     +G+       L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 324 NLKEL 328
           ++  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 303 VLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYL 362
           VL L            +  L  +  L L +N L   +PP+L  L   E+L + ++    +
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 58

Query: 363 PYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT---GNISEALAIYPN 419
                     E+   +    Q      + +C  L+ ++L GN+L    G       + P+
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 420 LT 421
           ++
Sbjct: 119 VS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 134 KFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG 193
           + L +    L  ++   + QL  +    L  N L   +PP+L  L  + +L   DN    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-- 55

Query: 194 FIPSDIGNSKSIFNLDLSSNQF-SGPIPLFFGNLSNLKSLYLYGNSLSS 241
                + N   +  L L +N+           +   L  L L GNSL  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444
           T+   +     +  + L+ N L       LA    L  +  S N              + 
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQ- 68

Query: 445 DTLNVSMNNITGG-IPREIGNSSQLQALDLSLNHIVGE---IPKELGKLNSLTKLI 496
             L +  N +      + + +  +L  L+L  N +  E     +    L S++ ++
Sbjct: 69  -ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 111 YLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGS 170
            L L    L  T+   +  L  +  L +  N+L   +PP +  L  +EV     N    +
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA-LEN 57

Query: 171 VPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP---IPLFFGNLS 227
           V           LL   + L        + +   +  L+L  N               L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 228 NLKSL 232
           ++ S+
Sbjct: 118 SVSSI 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 8/232 (3%)

Query: 276 SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
           S       ++++   IP ++   R+   L     + + +   + S   +L+++ +  N +
Sbjct: 9   SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 336 SGSIPPSLGNLILRELLLSGNHFA---GYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
              I   + + + +   +            P        L+   +S    +        +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 393 CTSLIRVHLNG--NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVS 450
               + + +    N  T   +  + +      + L++N      +  +      +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 451 MNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502
            NN+          +S    LD+S   I       L  L  L        ++
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK 237

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 185 FIYDNLFSGFIPSDI-GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS 238
            + DN     +P+D+   +     LD+S  +          NL  L++   Y   
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
             D         +LD++  +   +    + NL  L+  +    +L   +P 
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 3/86 (3%)

Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
           L+L  N +      +    +       + N         F   +    L +S+  +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 292 PDEIGKMRSLSVLDLNENQFKGVLPP 317
              +  ++ L        +    LP 
Sbjct: 218 SYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/40 (17%), Positives = 10/40 (25%)

Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262
           F   S    L +    + S     L   K L        +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYI 267
           +L   Q    + L      +     L    L S P L +      L       +     +
Sbjct: 3   ELKPEQVEQ-LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL----NRRSSMAATL 57

Query: 268 PRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
                N+  L +L LS N L     +   + K  +L +L+L+ N+ K            L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 326 KELALLYNHLSGSIP 340
           +EL L  N LS +  
Sbjct: 118 EELWLDGNSLSDTFR 132

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSF 271
            N+        F  L  LK+L LY N +S  +  S     SL  L L  N F        
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLA 145

Query: 272 GNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312
                L    L+        P +   +R + + DL  ++FK
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 8/186 (4%)

Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGS 170
           +D TG GL   IP    +  H   L ++ N+L       + G+L  +    L  N L G 
Sbjct: 13  VDCTGRGLK-EIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 171 VPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK 230
            P +    SHI  L + +N               +  L+L  NQ S  +P  F +L++L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290
           SL L  N  +          + L    LN        P    ++       L  +E   S
Sbjct: 130 SLNLASNPFNC-NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEFKCS 185

Query: 291 IPDEIG 296
             +  G
Sbjct: 186 SENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 7/176 (3%)

Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTGY 266
           +D +       IP       +   L L  N L       L G+   L+ L+L  NQ TG 
Sbjct: 13  VDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
            P +F   + +  L+L +N++          +  L  L+L +NQ   V+P S  +L +L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 327 ELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHF 382
            L L  N  + +   +     LR+  L+G       P  +     ++I  +  + F
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 34/132 (25%), Gaps = 7/132 (5%)

Query: 201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE 260
           N+     LDL   +    I      L    ++    N +    L      + L  L +N 
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNN 72

Query: 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPP--- 317
           N+           L  L+ L L+ N L      +                          
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 318 -SISNLTNLKEL 328
             I  +  ++ L
Sbjct: 133 YVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 317 PSISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIF 375
              +N    +EL L    +   I      L     +  S N       + + +   L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR--LKTL 68

Query: 376 TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG-NISEALAIYPNLTFIDLSRNNFYGEI 434
            V+ N          +    L  + L  N+L      + LA   +LT++ + RN    + 
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 435 ---SSNWGKCPKLDTLN 448
                   K P++  L+
Sbjct: 129 HYRLYVIYKVPQVRVLD 145

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 22/212 (10%)

Query: 285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
           N++F    D    +       L +         S ++L  +  L      +  SI   + 
Sbjct: 9   NQIF---TDT--ALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIK-SIDG-VE 59

Query: 345 NLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
            L  L ++  S N      P        L+  T   +        +     + +      
Sbjct: 60  YLNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITPLANLTNLTGL 111

Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463
                 I++   +        L  ++      S       L  LN S N +T   P  + 
Sbjct: 112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LA 169

Query: 464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKL 495
           N + L+ LD+S N +       L KL +L  L
Sbjct: 170 NLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 15/199 (7%)

Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332
            L       L K  +  ++      +  ++ L  +    K +    +  L NL ++    
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 333 NHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
           N L+      L NL     +L  N+    +           +   +          ++ N
Sbjct: 72  NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
              L             IS+  A+    +   L+ ++              L+ L++S N
Sbjct: 130 LNRLELSS-------NTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN 182

Query: 453 NITGGIPREIGNSSQLQAL 471
            ++      +   + L++L
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 24/179 (13%)

Query: 290 SIPDEIGK---MRSLSVLDLNENQFKGVLPP------SISNLTNLKELALLYNHLSGSIP 340
           +I D I      +S+   +  + +  G++PP      ++S L   K LAL  N++     
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--I 63

Query: 341 PSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV 399
            SL  +  LR   LS          N+              +   ++    +     +  
Sbjct: 64  SSLSGMENLRI--LSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121

Query: 400 HLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW----------GKCPKLDTLN 448
             N         + LA    L  + L+ N  Y +   N            + P L  L+
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 31/191 (16%)

Query: 244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303
           +    + KS++  +  + +  G IP                      +   +  +++   
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPP------------------IEKMDATLSTLKACKH 52

Query: 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP 363
           L L+ N  + +   S+S + NL+ L+L  N     I          E L    +    L 
Sbjct: 53  LALSTNNIEKI--SSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS 109

Query: 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEA---------- 413
                     ++  +           +     L  + L GN L  +  E           
Sbjct: 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

Query: 414 LAIYPNLTFID 424
           +   PNL  +D
Sbjct: 170 VKRLPNLKKLD 180

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 14/133 (10%), Positives = 42/133 (31%), Gaps = 1/133 (0%)

Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
               +  ++++  L + + Q    + L     L  L++L +  + L      +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 254 IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313
             L L+ N       ++   L+    +              + +     +  + E + + 
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC 142

Query: 314 VLPPSISNLTNLK 326
                ++++ N  
Sbjct: 143 HGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYN 333
              S LR +++         +    +L+ L +   Q    L       L  L+ L ++ +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 334 HLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ-GTIPTSVRN 392
            L    P +         L    +    L +   QG +L+   +S N          ++ 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNL 420
                   +    L  +    LA  PN 
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.6e-40  Score=318.23  Aligned_cols=291  Identities=27%  Similarity=0.487  Sum_probs=218.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCc--cCceeeCCCC---CEEEEEcCCCCCccc--cCCccC
Q 037558           31 EPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCA--WYGISCNDAG---RVINISLRNTGLSGT--LHGFSF  103 (518)
Q Consensus        31 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~--w~g~~c~~~~---~v~~l~l~~~~~~~~--~~~~~l  103 (518)
                      |.++|++||++||+++.++  ..+.+|..+       .|||.  |.||+|+..+   ||++|+|+++++.|.  +|+ .+
T Consensus         3 c~~~e~~aLl~~k~~~~~~--~~l~sW~~~-------~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l   72 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP--TTLSSWLPT-------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL   72 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC--GGGTTCCTT-------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG
T ss_pred             CCHHHHHHHHHHHHHCCCC--CcCCCCCCC-------CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HH
Confidence            7899999999999999763  368999866       69995  9999998643   799999999988874  555 78


Q ss_pred             CCCCCCcEEeCCC-CCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558          104 SSFPRLAYLDLTG-SGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS  182 (518)
Q Consensus       104 ~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  182 (518)
                      .++++|++|+|++ |.+.|.+|+.|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.+++.++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            8888888888875 677777888888888888888888888777777777788888888888877777777787888888


Q ss_pred             EEEccCccccccCCccccCCCCC-cEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558          183 LLFIYDNLFSGFIPSDIGNSKSI-FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN  261 (518)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (518)
                      ++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++.++...+..+..+..+++++.++++++
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            88888887777777777776665 677777777777666666655443 5777777776666666677777777777777


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccc
Q 037558          262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNH  334 (518)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  334 (518)
                      .+.+.++ .+..+++|+.|++++|+++|.+|..++.+++|++|++++|+++|.+|. ++.+++|+.+++++|+
T Consensus       232 ~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7665443 466667777777777777767777777777777777777777766663 4566666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.8e-30  Score=246.04  Aligned_cols=248  Identities=29%  Similarity=0.453  Sum_probs=170.6

Q ss_pred             CCEeeCcCCCCcc--CCcccccCCCCCcEEEccC-CcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeee
Q 037558          253 LIDLQLNENQFTG--YIPRSFGNLTSLSTLRLSK-NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA  329 (518)
Q Consensus       253 L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  329 (518)
                      ++.|+++++.+.+  .+|..++++++|++|++++ |.++|.+|..++++++|++|++++|.+.+..+..+..+.+|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4444444444443  2445555555555555554 445555555555555555555555555555555555555555555


Q ss_pred             cccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCc-cEEecCCCcCccccChhhhcCCCCcEEEcccCccc
Q 037558          330 LLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGAL-EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT  407 (518)
Q Consensus       330 l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  407 (518)
                      +++|.+.+.+|..+.. +.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            5555555555544444 455555666666665666666555554 667777777777777777766544 6888888888


Q ss_pred             cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcccc
Q 037558          408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELG  487 (518)
Q Consensus       408 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  487 (518)
                      +.++..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|.++.++++|++|+|++|+++|.+|. ++
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~  288 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG  288 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc
Confidence            8888888888889999999988886655 477788999999999999988999999999999999999999988884 67


Q ss_pred             CCCCCCEEECcCCccc
Q 037558          488 KLNSLTKLILRGNQRA  503 (518)
Q Consensus       488 ~l~~L~~L~l~~n~~~  503 (518)
                      ++++|+.+++++|+..
T Consensus       289 ~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TGGGSCGGGTCSSSEE
T ss_pred             cCCCCCHHHhCCCccc
Confidence            8889999999999843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=7.5e-28  Score=237.47  Aligned_cols=343  Identities=24%  Similarity=0.321  Sum_probs=196.6

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..+.+|++|+++++++.. + +.+..+++|++|++++|++++ +| .++++++|++|++++|.+.+. + .++++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc-c-cccccccccc
Confidence            345567777777776653 2 346667777777777777763 33 267777777777777776632 2 2666677777


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |+++++.+++..+  ......+.......+.+......................     ....+.............+..
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhcccccccccccccccc
Confidence            7777666654322  333445555555555544322222111111111111111     112223333333333333333


Q ss_pred             ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558          264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL  343 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~  343 (518)
                      .  ....+..+++++.+++++|.+++..|  +..+++|++|++++|.++. + ..+..+++|+.+++++|.++       
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~-------  254 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS-------  254 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-------
T ss_pred             c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC-------
Confidence            2  22334455566666666665554332  2334556666666665552 1 23444555555555555444       


Q ss_pred             ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEE
Q 037558          344 GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI  423 (518)
Q Consensus       344 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  423 (518)
                                      +..+  +..+++|+.++++++.+.+..  .+..++.++.++++.|++++.  ..+..+++++.|
T Consensus       255 ----------------~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L  312 (384)
T d2omza2         255 ----------------NLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYL  312 (384)
T ss_dssp             ----------------CCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEE
T ss_pred             ----------------CCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeE
Confidence                            3222  444556666666666665332  255667777777777777653  346677778888


Q ss_pred             ecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCC
Q 037558          424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN  500 (518)
Q Consensus       424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  500 (518)
                      ++++|++.+..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       313 ~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         313 TLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88888777543  26677888888888888773 33 47778888888888888876544  778888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=5.6e-28  Score=238.39  Aligned_cols=349  Identities=21%  Similarity=0.225  Sum_probs=225.0

Q ss_pred             eCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcccc
Q 037558          113 DLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS  192 (518)
Q Consensus       113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~  192 (518)
                      .+..+.+.+.+.  ...+.+|++|+++++.++. + +.+..+++|++|++++|++++ ++ .++++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence            455555555433  3456678888888888763 3 356777888888888887774 33 3777777777777777776


Q ss_pred             ccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCccccc
Q 037558          193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG  272 (518)
Q Consensus       193 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  272 (518)
                      +..  .++++++|+.|+++++.+++..+  ......+.......+.+...............                  
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------  159 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL------------------  159 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE------------------
T ss_pred             ccc--ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc------------------
Confidence            542  26677777777777776664332  22334455555544444331111111111110                  


Q ss_pred             CCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEE
Q 037558          273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELL  352 (518)
Q Consensus       273 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~  352 (518)
                            ......     .....+...+.........|...  .......+++++.+++++|.+++..| ......++.|+
T Consensus       160 ------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~  225 (384)
T d2omza2         160 ------SFGNQV-----TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELS  225 (384)
T ss_dssp             ------EEEESC-----CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             ------cccccc-----chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEE
Confidence                  010000     00111222233333333333322  12233445555555555555553322 22234566666


Q ss_pred             ccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCcccc
Q 037558          353 LSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG  432 (518)
Q Consensus       353 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  432 (518)
                      +++|.+...  ..+..+++|+.+++++|.+.+..  .+..+++|++|+++++++++..  .+..++.++.+++++|++.+
T Consensus       226 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~  299 (384)
T d2omza2         226 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED  299 (384)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC
T ss_pred             CCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc
Confidence            666665542  24667789999999999998654  3778999999999999998654  47789999999999999975


Q ss_pred             ccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCcc
Q 037558          433 EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKV  512 (518)
Q Consensus       433 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~  512 (518)
                      .  ..+..++++++|++++|++.+..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++.+-+|  +.+
T Consensus       300 ~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         300 I--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             c--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence            3  45788999999999999999643  37889999999999999984 44 69999999999999999987655  677


Q ss_pred             CCCCC
Q 037558          513 CSSLE  517 (518)
Q Consensus       513 l~~L~  517 (518)
                      ++.|+
T Consensus       372 l~~L~  376 (384)
T d2omza2         372 LTRIT  376 (384)
T ss_dssp             CTTCS
T ss_pred             CCCCC
Confidence            77765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.8e-24  Score=201.98  Aligned_cols=248  Identities=22%  Similarity=0.310  Sum_probs=193.2

Q ss_pred             CCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC
Q 037558           68 ISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI  147 (518)
Q Consensus        68 ~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  147 (518)
                      ..-|.|.++.|...           +++ .+|. .+  .+++++|+|++|++....+..|.++++|++|++++|.+....
T Consensus         7 ~c~c~~~~~~C~~~-----------~L~-~lP~-~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~   71 (305)
T d1xkua_           7 RCQCHLRVVQCSDL-----------GLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS   71 (305)
T ss_dssp             TCEEETTEEECTTS-----------CCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred             CCEecCCEEEecCC-----------CCC-ccCC-CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccc
Confidence            44577888888642           222 3443 33  268999999999987666667899999999999999998777


Q ss_pred             CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCC--CCcchhccC
Q 037558          148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS--GPIPLFFGN  225 (518)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~  225 (518)
                      |..|.++++|++|++++|++. .+|..+  ...++.|.+.+|.+.+..+..+.....+..++...+...  ...+..+..
T Consensus        72 ~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~  148 (305)
T d1xkua_          72 PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  148 (305)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             hhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccc
Confidence            888999999999999999987 556543  357889999999888776666777888888888877543  234456777


Q ss_pred             CCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558          226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD  305 (518)
Q Consensus       226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  305 (518)
                      +++|+.+++++|.+.. ++..+  +++++.|++++|...+..+..+..++.++.|++++|.+.+..+.++..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            8888899988888765 33322  46788888888888877778888888888888888888877777888888888888


Q ss_pred             ccCCcccccCCccCcCCCCCCeeecccccccc
Q 037558          306 LNENQFKGVLPPSISNLTNLKELALLYNHLSG  337 (518)
Q Consensus       306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  337 (518)
                      +++|.++ .+|..+..+++|++|++++|+++.
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccCc
Confidence            8888887 567778888888888888888773

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.6e-23  Score=199.31  Aligned_cols=243  Identities=26%  Similarity=0.326  Sum_probs=119.4

Q ss_pred             CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558          156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY  235 (518)
Q Consensus       156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  235 (518)
                      ..+.+|.++..++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566676666666 5566553  467777777777665555566666667777766666665555566666666666666


Q ss_pred             cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc--c
Q 037558          236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK--G  313 (518)
Q Consensus       236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~  313 (518)
                      +|+++. +|..+  ...++.|++.+|.+.+..+..+..                        ...+..++...|...  .
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~------------------------~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNG------------------------LNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTT------------------------CTTCCEEECCSSCCCGGG
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhc------------------------cccccccccccccccccC
Confidence            666554 22221  124455555555544333333333                        344444444443221  1


Q ss_pred             cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558          314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC  393 (518)
Q Consensus       314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  393 (518)
                      ..+..+..+++|+.+++++|.+. .+|... .++++.|++++|...+..+..+..++.++.|++++|.+.+..+..+..+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC-SCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CCccccccccccCccccccCCcc-ccCccc-CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            22233444455555555555444 222211 1334444444444444444444444444444444444444334444444


Q ss_pred             CCCcEEEcccCccccccChhhhCCCCCCEEecccCccc
Q 037558          394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY  431 (518)
Q Consensus       394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  431 (518)
                      ++|++|+|++|+++ .+|.++..+++|++|++++|+++
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            44444444444444 22333444444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-24  Score=202.11  Aligned_cols=206  Identities=23%  Similarity=0.264  Sum_probs=132.1

Q ss_pred             CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEcc-CCCCCccCCcCCcCCCCCCEEE
Q 037558          107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLC-SNYLNGSVPPSLGNLSHISLLF  185 (518)
Q Consensus       107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~-~n~~~~~~p~~l~~l~~L~~L~  185 (518)
                      +.+++|+|++|+++...+..|..+++|++|++++|.+....+..+.++..+++++.. .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            457778888887765555567777777888877777776666666777777777664 3344444455666677777777


Q ss_pred             ccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558          186 IYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG  265 (518)
Q Consensus       186 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (518)
                      +++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|+++++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            77776665555556666666666666666665555556666666666666666665555556666666666666666665


Q ss_pred             CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                      ..|..|..+++|++|++++|++.+..+..+..+++|++|++++|.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            55555656666666666666665555555555566666666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-24  Score=200.80  Aligned_cols=237  Identities=19%  Similarity=0.228  Sum_probs=197.7

Q ss_pred             CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc-CccccccCCccccCCCCCcEEE
Q 037558          131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY-DNLFSGFIPSDIGNSKSIFNLD  209 (518)
Q Consensus       131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~-~n~~~~~~~~~~~~~~~L~~L~  209 (518)
                      +.+++|+|++|.++...+..|.++++|++|++++|.+....+..+..+..++.+... .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            568999999999986555679999999999999999987777788888899998765 5566667788899999999999


Q ss_pred             cccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcc
Q 037558          210 LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG  289 (518)
Q Consensus       210 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  289 (518)
                      +++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++.+..+..|.++++|+++++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999987777788889999999999999998777888889999999999999998778888899999999999999998


Q ss_pred             cCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhc
Q 037558          290 SIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNIC  367 (518)
Q Consensus       290 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~  367 (518)
                      ..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+...-+.......++.+....+.+....|..+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHc
Confidence            889999999999999999999998777888899999999999998875443222223355555556666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-21  Score=180.83  Aligned_cols=198  Identities=20%  Similarity=0.227  Sum_probs=109.0

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      ...+++.++++++. +|+ .+.  +++++|+|++|.+.+..+..|..+++|++|++++|.++ .+| .++.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~~-iP~-~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCSS-CCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCCe-eCc-CcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            33445666666553 443 222  45677777777776555556667777777777777665 333 2455666666666


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP  242 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (518)
                      ++|++. ..+..+.++++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+                
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l----------------  147 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT----------------  147 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc----------------
Confidence            666665 334455555666666666655555444445555555555555555544434444444                


Q ss_pred             ccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                              ++++.+++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       148 --------~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         148 --------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             --------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             --------ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                    44555555555554444444455555555555555554 44544455555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-21  Score=180.76  Aligned_cols=201  Identities=22%  Similarity=0.229  Sum_probs=135.2

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL  208 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  208 (518)
                      ....+..++.+++.++ .+|..+.  +++++|+|++|.+.+..+..|.++++|++|++++|.++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            3344555566666665 4555443  3566666666666644445566666666666666666532 2 24566677777


Q ss_pred             EcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558          209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF  288 (518)
Q Consensus       209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  288 (518)
                      ++++|+++. .+..+..+++|+.|+++++.+.+..+..+..+.+++.|++++|.+....+..+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            777777663 3455666777777777777777666666677777777777777777666666667778888888888877


Q ss_pred             ccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558          289 GSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS  336 (518)
Q Consensus       289 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (518)
                      +..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            666666777788888888888877 66766667777777777777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=4.4e-18  Score=164.46  Aligned_cols=137  Identities=22%  Similarity=0.310  Sum_probs=77.6

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY  187 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (518)
                      ++++|+|++++++ .+|+.   .++|++|++++|+++ .+|..+   .+|++|++++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            6778888888875 46643   467888888888887 667653   46777788877765 3332 1  1346777777


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      +|.+.. +| .++.+++|++|+++++.+... +.   ....+..+.+..+....  ...+..++.++.+.++++...
T Consensus       107 ~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            776653 33 245566666666666655422 11   12344444444333221  223344444455555444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=2.3e-17  Score=159.39  Aligned_cols=199  Identities=26%  Similarity=0.300  Sum_probs=120.2

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL  162 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L  162 (518)
                      ++++++|+++++.. +|+    ..++|++|++++|++. .+|+.   +.+|+.|++++|.++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            56778888887763 553    2467888888888876 55654   357888888888876 34421   135888888


Q ss_pred             cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558          163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP  242 (518)
Q Consensus       163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (518)
                      ++|.+. .+|. ++.+++|++|+++++.+....    .....+..+.+..+....  ...+..++.++.+.+.+|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccc----cccccccchhhccccccc--cccccccccceeccccccccccc
Confidence            888876 4553 577888888888888766432    224566677776655442  34466777888888887766542


Q ss_pred             ccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558          243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK  312 (518)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  312 (518)
                       +.   .....+.+...++.+. .++ .+..++.|+.+++++|... .++.   ...++..+.+.++.+.
T Consensus       178 -~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         178 -PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT  237 (353)
T ss_dssp             -CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS
T ss_pred             -cc---cccccccccccccccc-ccc-ccccccccccccccccccc-cccc---cccccccccccccccc
Confidence             11   1123344444444433 222 2345566666666666543 2222   2344555555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.1e-22  Score=199.16  Aligned_cols=383  Identities=19%  Similarity=0.140  Sum_probs=193.8

Q ss_pred             CCcEEeCCCCCCccc-CCccccCCCCCCEEECCCCCCCc----CCCccCCCCCCCcEEEccCCCCCcc----CCcCCc-C
Q 037558          108 RLAYLDLTGSGLFGT-IPPEVGLLSHLKFLFIDTNKLDG----SIPPEVGQLSSMEVFFLCSNYLNGS----VPPSLG-N  177 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~l~-~  177 (518)
                      +|++||++++++++. +...+..+++++.|+|++|.++.    .+...+..+++|++|||++|.+...    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            577888888877654 23335567778888888887763    2344456777777888777776421    122222 2


Q ss_pred             CCCCCEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCCcchhc----c-CCCCCcEEEcccCcCCccc----c
Q 037558          178 LSHISLLFIYDNLFSGF----IPSDIGNSKSIFNLDLSSNQFSGPIPLFF----G-NLSNLKSLYLYGNSLSSPI----L  244 (518)
Q Consensus       178 l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l----~-~l~~L~~L~l~~n~~~~~~----~  244 (518)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.++......+    . ..............+....    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24577777777766542    23445566667777776666543211111    1 1111222222222211100    0


Q ss_pred             ccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCcccc-CCCCCccEEEccCCccccc----CCccC
Q 037558          245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV----LPPSI  319 (518)
Q Consensus       245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~----~~~~l  319 (518)
                      ..+.....++.+.++++......-..                    ....+ ........+++..+.+...    ....+
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~--------------------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  222 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRV--------------------LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  222 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHH--------------------HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc--------------------cccccccccccccccccccccccchhhhcccccc
Confidence            11122234444444443322100000                    00000 0112233444444433211    00112


Q ss_pred             cCCCCCCeeeccccccccc-----CCcccc-cccCcEEEccCccCccc----CchhhcCCCCccEEecCCCcCccccChh
Q 037558          320 SNLTNLKELALLYNHLSGS-----IPPSLG-NLILRELLLSGNHFAGY----LPYNICQGGALEIFTVSENHFQGTIPTS  389 (518)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~-----~p~~~~-~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~  389 (518)
                      ...+.++.+.+.+|.+...     .+.... ...++.+++++|.+...    ....+...+.++.+++++|.+.+.....
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            2334455555555443211     000011 13455666666554432    2223344566677777777664322221


Q ss_pred             h-----hcCCCCcEEEcccCccccccC----hhhhCCCCCCEEecccCccccc----cCccc-cCCCCCCEEEccCCccc
Q 037558          390 V-----RNCTSLIRVHLNGNNLTGNIS----EALAIYPNLTFIDLSRNNFYGE----ISSNW-GKCPKLDTLNVSMNNIT  455 (518)
Q Consensus       390 ~-----~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~~~~~-~~~~~L~~L~ls~n~l~  455 (518)
                      +     .....|+.+++++|.++....    ..+...++|++|+|++|++.+.    ++..+ ...+.|++|++++|+++
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence            1     123567778888777765432    2334556788888888877643    22222 24567888888888876


Q ss_pred             cC----ccccccCCCCCCEEeCcCCcCcccCCccc----c-CCCCCCEEECcCCccccccCccC
Q 037558          456 GG----IPREIGNSSQLQALDLSLNHIVGEIPKEL----G-KLNSLTKLILRGNQRAVTLSFIN  510 (518)
Q Consensus       456 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~~~~~ip~~l  510 (518)
                      +.    ++..+..+++|++|+|++|++.......+    . +...|+.|++.+|.+.+..+..+
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            42    34455667888888888888775433333    2 33468888888888876555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.6e-21  Score=196.10  Aligned_cols=394  Identities=18%  Similarity=0.156  Sum_probs=235.4

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCccc----CCccccCCCCCCEEECCCCCCCcC----CCccCC-C
Q 037558           83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGT----IPPEVGLLSHLKFLFIDTNKLDGS----IPPEVG-Q  153 (518)
Q Consensus        83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~-~  153 (518)
                      ++++||++.+++++.--..-+..++++++|+|++|.++..    +...+..+++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5789999999987642111356789999999999998743    455678999999999999998631    233333 3


Q ss_pred             CCCCcEEEccCCCCCcc----CCcCCcCCCCCCEEEccCccccccCCccc-----cCCCCCcEEEcccCcCCCC----cc
Q 037558          154 LSSMEVFFLCSNYLNGS----VPPSLGNLSHISLLFIYDNLFSGFIPSDI-----GNSKSIFNLDLSSNQFSGP----IP  220 (518)
Q Consensus       154 l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~  220 (518)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+     ...................    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            45899999999998743    45567889999999999998875322111     1223344444444433311    11


Q ss_pred             hhccCCCCCcEEEcccCcCCcccc----ccc-cCCCCCCEeeCcCCCCccC----CcccccCCCCCcEEEccCCcCccc-
Q 037558          221 LFFGNLSNLKSLYLYGNSLSSPIL----SSL-GKFKSLIDLQLNENQFTGY----IPRSFGNLTSLSTLRLSKNELFGS-  290 (518)
Q Consensus       221 ~~l~~l~~L~~L~l~~n~~~~~~~----~~l-~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-  290 (518)
                      ..+.....++.+.++++.......    ..+ ........+.+..+.+...    ....+...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            234456788999998876543211    111 1223456677777655421    112234567788888887765321 


Q ss_pred             ----CccccCCCCCccEEEccCCcccccC----CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccC
Q 037558          291 ----IPDEIGKMRSLSVLDLNENQFKGVL----PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYL  362 (518)
Q Consensus       291 ----~p~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  362 (518)
                          .+........++.+++++|.+....    ...+...+.++.+++++|.+.......+                   
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l-------------------  303 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL-------------------  303 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH-------------------
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh-------------------
Confidence                2223344567777777777665321    1223445566666666665542111100                   


Q ss_pred             chhh-cCCCCccEEecCCCcCccccC----hhhhcCCCCcEEEcccCccccc----cChhhh-CCCCCCEEecccCcccc
Q 037558          363 PYNI-CQGGALEIFTVSENHFQGTIP----TSVRNCTSLIRVHLNGNNLTGN----ISEALA-IYPNLTFIDLSRNNFYG  432 (518)
Q Consensus       363 ~~~~-~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~  432 (518)
                      ...+ .....|+.+++++|.+.....    ..+...++|++|+|++|++++.    ++..+. ..+.|++|+|++|.++.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            0011 122355666666665543322    2334556788888888877643    223332 35668888888888764


Q ss_pred             c----cCccccCCCCCCEEEccCCccccCcccc----cc-CCCCCCEEeCcCCcCcccCCccc----cCCCCCCEE
Q 037558          433 E----ISSNWGKCPKLDTLNVSMNNITGGIPRE----IG-NSSQLQALDLSLNHIVGEIPKEL----GKLNSLTKL  495 (518)
Q Consensus       433 ~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~-~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L  495 (518)
                      .    +...+..+++|++|++++|++++.....    +. +...|+.|++.+|.+.+.....+    ...|+|++|
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            3    3344556788888888888876533322    22 33468888888888776555444    235666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=8.6e-18  Score=151.89  Aligned_cols=188  Identities=27%  Similarity=0.322  Sum_probs=101.9

Q ss_pred             cCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcE
Q 037558          128 GLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFN  207 (518)
Q Consensus       128 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  207 (518)
                      ..+.+|++|++.+|.++ .+ ..+.++++|++|++++|.+.+..  .+.++++|+++++++|.++..  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence            34455555555555554 23 23555555555555555554322  255555555555555555421  23555566666


Q ss_pred             EEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcC
Q 037558          208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL  287 (518)
Q Consensus       208 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  287 (518)
                      ++++++...+.  ..+...+.++.+.++++.+...  ..+...++|+.|++++|.+.+..  .+.++++|++|++++|++
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCcc
Confidence            66665555432  2244455566666665555432  22445556666666666655322  255666666666666666


Q ss_pred             cccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecc
Q 037558          288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL  331 (518)
Q Consensus       288 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  331 (518)
                      ++ ++. ++.+++|++|++++|++++ ++ .+..+++|+.|+++
T Consensus       186 ~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         186 SD-ISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CC-CGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             CC-Chh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence            53 332 5566666677776666663 22 25566666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.2e-17  Score=150.82  Aligned_cols=203  Identities=19%  Similarity=0.294  Sum_probs=159.2

Q ss_pred             EEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCC
Q 037558           87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY  166 (518)
Q Consensus        87 l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~  166 (518)
                      ++++...+.+..   .++++.+|+.|++.+|++.. + +.+..+++|++|++++|.+++..  .+.++++|+++++++|.
T Consensus        24 ~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC---CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            344444444433   35677889999999998864 3 35889999999999999987433  38899999999999998


Q ss_pred             CCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccccc
Q 037558          167 LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS  246 (518)
Q Consensus       167 ~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  246 (518)
                      ++ .+ ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+....  .+..+++|++|++++|.+...  ..
T Consensus        97 ~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          97 LK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hh
Confidence            86 33 3578899999999998877653  34677889999999988887543  366788999999999988753  34


Q ss_pred             ccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccC
Q 037558          247 LGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE  308 (518)
Q Consensus       247 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  308 (518)
                      +.++++|+.|++++|++++. + .+.++++|++|++++|++++ ++ .+..+++|++|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            78899999999999998853 3 37889999999999999885 44 378899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.1e-17  Score=147.77  Aligned_cols=200  Identities=15%  Similarity=0.047  Sum_probs=93.5

Q ss_pred             CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC-ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558          108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP-PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI  186 (518)
Q Consensus       108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l  186 (518)
                      ++++|++++|.+....+..|.++++|++|++++|.+...++ ..|.++++++++++..                      
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~----------------------   87 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK----------------------   87 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC----------------------
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc----------------------
Confidence            45555555555543333345555555555555555443222 2244444444444432                      


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCCcch-hccCCCCCcEEEcccCcCCccccccccCCC-CCCEeeCcCCCCc
Q 037558          187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFK-SLIDLQLNENQFT  264 (518)
Q Consensus       187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~  264 (518)
                       .+.+....+..+.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++
T Consensus        88 -~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 -ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             -CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             -cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             1233333344444445555555555444322111 122233333333444444443334444332 5556666666665


Q ss_pred             cCCcccccCCCCCcEE-EccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecc
Q 037558          265 GYIPRSFGNLTSLSTL-RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL  331 (518)
Q Consensus       265 ~~~~~~l~~l~~L~~L-~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  331 (518)
                      ...+. .....+++++ .+.+|+++...+..|.++++|++|++++|+++...+..+.++++|+.+++.
T Consensus       167 ~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            33222 2333444444 345555653333345666777777777777664333345555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=141.90  Aligned_cols=102  Identities=25%  Similarity=0.399  Sum_probs=44.5

Q ss_pred             CCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 037558          130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLD  209 (518)
Q Consensus       130 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  209 (518)
                      +.+|++|++++|.++. ++ .+..+++|++|++++|.+++. + .++.+++|++|++++|++++. + .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-cccccccccccc
Confidence            3445555555555542 21 244455555555555554421 1 234444555555555444421 1 244444444444


Q ss_pred             cccCcCCCCcchhccCCCCCcEEEcccCcC
Q 037558          210 LSSNQFSGPIPLFFGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       210 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  239 (518)
                      +++|.+.. + ..+..++.++.+++++|.+
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCC
T ss_pred             cccccccc-c-ccccccccccccccccccc
Confidence            44444431 1 1233444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2e-16  Score=139.50  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 037558          130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLD  209 (518)
Q Consensus       130 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  209 (518)
                      ++++++|++++|.++ .+ +.+..+++|++|++++|++++. + .+.++++|++|++++|.+... + .+.+++.|++|+
T Consensus        39 l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc-c-cccccccccccc
Confidence            344444555444444 12 1234444444444444444321 1 144444444444444443321 1 233444444444


Q ss_pred             cccCcC
Q 037558          210 LSSNQF  215 (518)
Q Consensus       210 l~~n~~  215 (518)
                      ++++..
T Consensus       113 l~~~~~  118 (199)
T d2omxa2         113 LFNNQI  118 (199)
T ss_dssp             CCSSCC
T ss_pred             cccccc
Confidence            444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=138.59  Aligned_cols=163  Identities=23%  Similarity=0.406  Sum_probs=119.5

Q ss_pred             CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558          104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL  183 (518)
Q Consensus       104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (518)
                      ..++++++|+++++.+.. + +.+..+++|++|++++|.+++ ++. ++++++|++|++++|.+.. ++ .+.++++|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccccccccccccc-cc-cccccccccc
Confidence            457788899999988764 2 357888999999999999884 333 8889999999999998763 33 4788899999


Q ss_pred             EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558          184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF  263 (518)
Q Consensus       184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (518)
                      |++++|.....  ..+..+++|+.|++++|.+.. + ..+..+++|++|++.+|.+++.  ..++++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            99998887643  347778888888888888763 2 3467777888888887777652  2366667777777777766


Q ss_pred             ccCCcccccCCCCCcEE
Q 037558          264 TGYIPRSFGNLTSLSTL  280 (518)
Q Consensus       264 ~~~~~~~l~~l~~L~~L  280 (518)
                      ++ ++ .+.++++|++|
T Consensus       185 ~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC-CG-GGGGCTTCSEE
T ss_pred             CC-Cc-cccCCCCCCcC
Confidence            64 22 35566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.8e-16  Score=140.97  Aligned_cols=182  Identities=24%  Similarity=0.338  Sum_probs=142.3

Q ss_pred             EEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCc
Q 037558          135 FLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ  214 (518)
Q Consensus       135 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  214 (518)
                      ..++..+.+++.++.  ..+.+|++|++++|.+...  ..+..+++|++|++++|++++..  .++.+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            345555555544332  3467899999999998743  35788999999999999998643  46889999999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccc
Q 037558          215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE  294 (518)
Q Consensus       215 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~  294 (518)
                      +++ ++ .+..+++|+.|++++|.+..  ...+..++.++.+++++|.+++.  ..+..+++|+++++++|++++ ++ .
T Consensus       102 i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~  173 (210)
T d1h6ta2         102 VKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-P  173 (210)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-G
T ss_pred             ccc-cc-cccccccccccccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccc-cc-c
Confidence            884 44 47889999999999998765  34578888999999999988743  456778899999999998874 33 3


Q ss_pred             cCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccc
Q 037558          295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY  332 (518)
Q Consensus       295 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  332 (518)
                      +..+++|++|++++|.++. ++ .+..+++|++|++++
T Consensus       174 l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7888999999999999874 44 578889999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.8e-17  Score=146.40  Aligned_cols=218  Identities=16%  Similarity=0.126  Sum_probs=117.6

Q ss_pred             CEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccC-CccCcCCCCCCeeeccc
Q 037558          254 IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL-PPSISNLTNLKELALLY  332 (518)
Q Consensus       254 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~  332 (518)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555555 4454432  45666666666666444445666666666666666655432 23455556666555443


Q ss_pred             ccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh-hhhcCCCCcEEEcccCccccccC
Q 037558          333 NHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT-SVRNCTSLIRVHLNGNNLTGNIS  411 (518)
Q Consensus       333 n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  411 (518)
                      +                      |.+....+..+..+++|+.+++++|.+....+. .+..+..+..+...++++....+
T Consensus        88 ~----------------------n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          88 A----------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             C----------------------TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             c----------------------ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence            2                      223333334445555555555555555422111 22234444455555556655545


Q ss_pred             hhhhCCC-CCCEEecccCccccccCccccCCCCCCEE-EccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCC
Q 037558          412 EALAIYP-NLTFIDLSRNNFYGEISSNWGKCPKLDTL-NVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL  489 (518)
Q Consensus       412 ~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L-~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  489 (518)
                      ..+..++ .++.|++++|+++...+..+ ..++++++ ++++|+++...+..|.++++|++|++++|++....+..+.++
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             cccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            5555543 66777777777764433333 34454444 456666663333456777888888888887774444445555


Q ss_pred             CCCCEEEC
Q 037558          490 NSLTKLIL  497 (518)
Q Consensus       490 ~~L~~L~l  497 (518)
                      +.|+.+++
T Consensus       225 ~~L~~l~~  232 (242)
T d1xwdc1         225 KKLRARST  232 (242)
T ss_dssp             CEEESSSE
T ss_pred             cccccCcC
Confidence            55555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.1e-16  Score=140.22  Aligned_cols=125  Identities=29%  Similarity=0.330  Sum_probs=54.2

Q ss_pred             EEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC-CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          111 YLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI-PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      +++.++++++ .+|..+.  +++++|+|++|.+++.+ +..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4455554443 2333221  34445555555444322 223344444444444444444444444444444444444444


Q ss_pred             cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCc
Q 037558          190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS  238 (518)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  238 (518)
                      ++....+..|.++++|++|++++|.++...+..|..+++|++|++++|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            4444444444444444444444444443333334444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.9e-16  Score=138.71  Aligned_cols=128  Identities=26%  Similarity=0.349  Sum_probs=68.8

Q ss_pred             CEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccC-CcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          134 KFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV-PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       134 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      +.++.++++++ .+|..+.  +++++|+|++|.+++.+ +..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666666666 5565543  45666666666665433 33345555555555555555555555555555555555555


Q ss_pred             CcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558          213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT  264 (518)
Q Consensus       213 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (518)
                      |++....+..|.++++|++|+|++|.+++..+.+|..+++|++|++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555444444555555555555555555544444444444455444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.7e-16  Score=143.24  Aligned_cols=256  Identities=17%  Similarity=0.168  Sum_probs=135.1

Q ss_pred             cEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCccc-CccccCCCCCccEEEccC
Q 037558          230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLDLNE  308 (518)
Q Consensus       230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~  308 (518)
                      +.++++++.+.......+.. .....+.+.......... ......+|++|+++++.+++. ++..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            45677766654322221111 134455555444332221 223445677777777766533 233456677777777777


Q ss_pred             CcccccCCccCcCCCCCCeeeccccc-ccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCc-Cccc-
Q 037558          309 NQFKGVLPPSISNLTNLKELALLYNH-LSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENH-FQGT-  385 (518)
Q Consensus       309 n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-  385 (518)
                      +.+.+..+..+..+++|++|+++++. ++...                      +......+++|+.|++++|. +++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----------------------l~~l~~~~~~L~~L~ls~c~~~~~~~  138 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----------------------LQTLLSSCSRLDELNLSWCFDFTEKH  138 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----------------------HHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccc----------------------cchhhHHHHhcccccccccccccccc
Confidence            77766555566666777777776642 32110                      11112234555566665542 2211 


Q ss_pred             cChhhh-cCCCCcEEEcccC--ccccc-cChhhhCCCCCCEEecccCc-cccccCccccCCCCCCEEEccCC-ccccCcc
Q 037558          386 IPTSVR-NCTSLIRVHLNGN--NLTGN-ISEALAIYPNLTFIDLSRNN-FYGEISSNWGKCPKLDTLNVSMN-NITGGIP  459 (518)
Q Consensus       386 ~~~~~~-~l~~L~~L~L~~n--~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~  459 (518)
                      +...+. .+++|+.|+++++  .+++. +......+++|++|++++|. +++.....+..+++|++|++++| .+++...
T Consensus       139 ~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence            111122 2456777777664  23322 22333556777777777653 55555556666777777777775 4555555


Q ss_pred             ccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCcc
Q 037558          460 REIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKV  512 (518)
Q Consensus       460 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~  512 (518)
                      ..+.++++|+.|++++|--.+.+......+|+|+   +..++++...++.+++
T Consensus       219 ~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            5566777777777777722222222223455554   3555666555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.9e-16  Score=144.40  Aligned_cols=157  Identities=23%  Similarity=0.294  Sum_probs=115.0

Q ss_pred             ccCcEEEccCccCcccCchhhcCCCCccEEecCCC-cCccc-cChhhhcCCCCcEEEcccC-ccccc-cChhh-hCCCCC
Q 037558          346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN-HFQGT-IPTSVRNCTSLIRVHLNGN-NLTGN-ISEAL-AIYPNL  420 (518)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l-~~l~~L  420 (518)
                      ++|++|++++|.+.+..+..+..+++|+.|++++| .+++. +......+++|++|++++| .+++. +...+ ..+++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            45566666666555555666777888999999886 44432 2223457899999999997 45432 22223 345899


Q ss_pred             CEEecccCc--cccc-cCccccCCCCCCEEEccCCc-cccCccccccCCCCCCEEeCcCC-cCcccCCccccCCCCCCEE
Q 037558          421 TFIDLSRNN--FYGE-ISSNWGKCPKLDTLNVSMNN-ITGGIPREIGNSSQLQALDLSLN-HIVGEIPKELGKLNSLTKL  495 (518)
Q Consensus       421 ~~L~L~~n~--l~~~-~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L  495 (518)
                      +.|+++++.  ++.. +...+..+++|++|++++|. +++..+..+.++++|++|++++| .+++.....++++++|+.|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence            999999863  4332 33345678999999999975 67677778889999999999997 6777777788999999999


Q ss_pred             ECcCCcc
Q 037558          496 ILRGNQR  502 (518)
Q Consensus       496 ~l~~n~~  502 (518)
                      ++++|--
T Consensus       231 ~l~~~~~  237 (284)
T d2astb2         231 QVFGIVP  237 (284)
T ss_dssp             ECTTSSC
T ss_pred             eeeCCCC
Confidence            9999833

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=2.6e-15  Score=144.38  Aligned_cols=251  Identities=20%  Similarity=0.201  Sum_probs=145.6

Q ss_pred             cccccCCCCCCEeeCcCCCCccC----CcccccCCCCCcEEEccCCcCcc---c-------CccccCCCCCccEEEccCC
Q 037558          244 LSSLGKFKSLIDLQLNENQFTGY----IPRSFGNLTSLSTLRLSKNELFG---S-------IPDEIGKMRSLSVLDLNEN  309 (518)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~---~-------~p~~~~~l~~L~~L~l~~n  309 (518)
                      ...+.....++.|++++|.+...    +...+...++|+.++++++....   .       +...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34455567788888887776532    22334566777788877664321   1       1122345667777777777


Q ss_pred             cccccC----CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc
Q 037558          310 QFKGVL----PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT  385 (518)
Q Consensus       310 ~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  385 (518)
                      .+....    ...+...++|++|++++|.+.......+.. .+..+         .........+.++.+.+++|.+...
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-ALQEL---------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-HHHHH---------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccc-ccccc---------ccccccccCcccceeeccccccccc
Confidence            665432    223344566666766666543211000000 00000         0001112345667777777665432


Q ss_pred             ----cChhhhcCCCCcEEEcccCccccc-----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCC
Q 037558          386 ----IPTSVRNCTSLIRVHLNGNNLTGN-----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMN  452 (518)
Q Consensus       386 ----~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n  452 (518)
                          +...+..++.|++|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence                233345677888888888877642     234456678888888888887543    3345667788888888888


Q ss_pred             ccccCcc----ccccC--CCCCCEEeCcCCcCcccC----Ccccc-CCCCCCEEECcCCcccc
Q 037558          453 NITGGIP----REIGN--SSQLQALDLSLNHIVGEI----PKELG-KLNSLTKLILRGNQRAV  504 (518)
Q Consensus       453 ~l~~~~~----~~~~~--l~~L~~L~L~~n~l~~~~----~~~l~-~l~~L~~L~l~~n~~~~  504 (518)
                      .+.+.-.    ..+..  .+.|++|++++|++....    ...+. +++.|++|++++|++..
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            8765322    23332  357888888888876533    23332 46788888888888853

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.2e-15  Score=146.83  Aligned_cols=235  Identities=15%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             cCCCCCCCcEEeCCCCCCccc----CCccccCCCCCCEEECCCCCCCcC----------CCccCCCCCCCcEEEccCCCC
Q 037558          102 SFSSFPRLAYLDLTGSGLFGT----IPPEVGLLSHLKFLFIDTNKLDGS----------IPPEVGQLSSMEVFFLCSNYL  167 (518)
Q Consensus       102 ~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----------~p~~l~~l~~L~~L~L~~n~~  167 (518)
                      .+.+...+++|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            345677788888888766433    334456677888888877654311          122345667788888887776


Q ss_pred             Ccc----CCcCCcCCCCCCEEEccCccccccCCcc-------------ccCCCCCcEEEcccCcCCCCc----chhccCC
Q 037558          168 NGS----VPPSLGNLSHISLLFIYDNLFSGFIPSD-------------IGNSKSIFNLDLSSNQFSGPI----PLFFGNL  226 (518)
Q Consensus       168 ~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~~~----~~~l~~l  226 (518)
                      ...    +...+..+++|++|++++|.+.......             ....+.|+.+++++|.+....    ...+..+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            542    2223445677777777777654311111             124556777777776665322    2234455


Q ss_pred             CCCcEEEcccCcCCcc-----ccccccCCCCCCEeeCcCCCCccC----CcccccCCCCCcEEEccCCcCcccCccc---
Q 037558          227 SNLKSLYLYGNSLSSP-----ILSSLGKFKSLIDLQLNENQFTGY----IPRSFGNLTSLSTLRLSKNELFGSIPDE---  294 (518)
Q Consensus       227 ~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~---  294 (518)
                      +.|+.|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++.....   
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            6677777777666532     223455566666666666665432    2233455666666666666655332111   


Q ss_pred             -cC--CCCCccEEEccCCcccccC----CccC-cCCCCCCeeeccccccc
Q 037558          295 -IG--KMRSLSVLDLNENQFKGVL----PPSI-SNLTNLKELALLYNHLS  336 (518)
Q Consensus       295 -~~--~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~l~~n~l~  336 (518)
                       +.  ..+.|++|++++|.+....    ...+ .+.++|++|++++|.+.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             11  1245666666666654321    1111 13445555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.3e-14  Score=120.08  Aligned_cols=126  Identities=10%  Similarity=0.068  Sum_probs=85.6

Q ss_pred             cCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCE
Q 037558          367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT  446 (518)
Q Consensus       367 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  446 (518)
                      .+..++++|++++|+++ .++..+..+++|+.|++++|+|+..  +.+..+++|++|++++|++....+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34456666777777666 3455456677777777777777743  24667777888888888877555555566778888


Q ss_pred             EEccCCccccCcc--ccccCCCCCCEEeCcCCcCcccCC----ccccCCCCCCEEEC
Q 037558          447 LNVSMNNITGGIP--REIGNSSQLQALDLSLNHIVGEIP----KELGKLNSLTKLIL  497 (518)
Q Consensus       447 L~ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l  497 (518)
                      |++++|++.. ++  ..+..+++|++|++++|++.. .|    ..+..+|+|++||-
T Consensus        92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             ceeccccccc-cccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            8888887763 32  356777888888888887763 33    24667888888763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=120.54  Aligned_cols=108  Identities=14%  Similarity=0.071  Sum_probs=44.2

Q ss_pred             CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558          129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL  208 (518)
Q Consensus       129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  208 (518)
                      +..++|+|+|++|.++ .++..+..+++|++|++++|.+. .+ +.+..+++|++|++++|+++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3334444444444443 23333333444444444444443 12 123444444444444444443333223344444444


Q ss_pred             EcccCcCCCCc-chhccCCCCCcEEEcccCcC
Q 037558          209 DLSSNQFSGPI-PLFFGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       209 ~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~  239 (518)
                      ++++|.+.... ...+..+++|++|++++|++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             eeccccccccccccccccccccchhhcCCCcc
Confidence            44444443211 12334444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.2e-13  Score=110.72  Aligned_cols=102  Identities=22%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558          110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN  189 (518)
Q Consensus       110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n  189 (518)
                      |+|+|++|+++. ++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+ +| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            456666666642 22 3566666666666666665 455556666666666666666652 22 3556666666666666


Q ss_pred             cccccC-CccccCCCCCcEEEcccCcCC
Q 037558          190 LFSGFI-PSDIGNSKSIFNLDLSSNQFS  216 (518)
Q Consensus       190 ~~~~~~-~~~~~~~~~L~~L~l~~n~~~  216 (518)
                      ++.+.. ...+..+++|++|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            655432 234555556666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.4e-13  Score=110.40  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccC
Q 037558          134 KFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN  213 (518)
Q Consensus       134 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  213 (518)
                      |+|++++|.++ .++ .++++++|++|++++|.+. .+|+.++.+++|++|++++|.+++. | .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            56788888877 444 4677777888888877776 5666677777777777777777643 2 4667777777777777


Q ss_pred             cCCCCc-chhccCCCCCcEEEcccCcCC
Q 037558          214 QFSGPI-PLFFGNLSNLKSLYLYGNSLS  240 (518)
Q Consensus       214 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~  240 (518)
                      ++.... ...+..+++|++|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            766432 234556666666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.7e-12  Score=106.50  Aligned_cols=147  Identities=12%  Similarity=0.029  Sum_probs=100.0

Q ss_pred             cCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC-ccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558          367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN-NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD  445 (518)
Q Consensus       367 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  445 (518)
                      +.+...+.++.+++.+. ..|..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++...+..|..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            33444556777777766 56777778888999999766 48877777888899999999999999877788888899999


Q ss_pred             EEEccCCccccCccccccCCCCCCEEeCcCCcCcc-cCCccccCCCCCCEEECcCCccccccCccCccCCC
Q 037558          446 TLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSS  515 (518)
Q Consensus       446 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~  515 (518)
                      +|+|++|+++ .+|........|+.|+|++|++.- ....++..........+..+++...-|..+.+++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            9999999988 444443344478899999998741 11111211111222334455666666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.4e-13  Score=120.42  Aligned_cols=130  Identities=22%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             cCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccC
Q 037558          361 YLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK  440 (518)
Q Consensus       361 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  440 (518)
                      .++..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|+++. ++.....+++|++|++++|+++..  ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccc
Confidence            345567778888888888888873 43 47788888999998888874 444455566788999998888743  34667


Q ss_pred             CCCCCEEEccCCccccCcc--ccccCCCCCCEEeCcCCcCcccCCcc----------ccCCCCCCEEE
Q 037558          441 CPKLDTLNVSMNNITGGIP--REIGNSSQLQALDLSLNHIVGEIPKE----------LGKLNSLTKLI  496 (518)
Q Consensus       441 ~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~  496 (518)
                      +++|++|++++|++++ ++  ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8889999999988874 33  45788889999999998876544432          56788888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.7e-13  Score=119.83  Aligned_cols=119  Identities=24%  Similarity=0.268  Sum_probs=98.7

Q ss_pred             ccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccC
Q 037558          385 TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN  464 (518)
Q Consensus       385 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  464 (518)
                      .++..+..+++|++|++++|+|+.. + .+..+++|++|++++|++. .++.....+++|++|++++|+++. ++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            4567788999999999999999954 3 5889999999999999997 445555556789999999999984 43 4778


Q ss_pred             CCCCCEEeCcCCcCcccCC-ccccCCCCCCEEECcCCccccccCc
Q 037558          465 SSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQRAVTLSF  508 (518)
Q Consensus       465 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ip~  508 (518)
                      +++|++|++++|++..... ..+..+++|+.|++++|++....+.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            8999999999999985422 4688999999999999998766554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.8e-11  Score=99.56  Aligned_cols=104  Identities=16%  Similarity=0.071  Sum_probs=50.9

Q ss_pred             CEEECCCCCCCcCCCccCCCCCCCcEEEccCCC-CCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558          134 KFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY-LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS  212 (518)
Q Consensus       134 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  212 (518)
                      ..++.+++.+. ..|..+..+++|++|++++++ +....+..|.++++|+.|++++|+++...+..|..+++|++|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444 344445555555555554332 4433333455555555555555555555455555555555555555


Q ss_pred             CcCCCCcchhccCCCCCcEEEcccCcC
Q 037558          213 NQFSGPIPLFFGNLSNLKSLYLYGNSL  239 (518)
Q Consensus       213 n~~~~~~~~~l~~l~~L~~L~l~~n~~  239 (518)
                      |+++...+..+. ..+|+.|++++|.+
T Consensus        90 N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCCcccChhhhc-cccccccccCCCcc
Confidence            555532222232 22455555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.9e-09  Score=86.38  Aligned_cols=87  Identities=24%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             cChhhhCCCCCCEEecccCcccccc--CccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCc---
Q 037558          410 ISEALAIYPNLTFIDLSRNNFYGEI--SSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK---  484 (518)
Q Consensus       410 ~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---  484 (518)
                      +......+++|++|++++|+++...  +..+..+++|+.|++++|.+....+..+.....|++|++++|++.+....   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3444556788888888888887542  34456788888888888888843332334455788899999988765442   


Q ss_pred             ----cccCCCCCCEEE
Q 037558          485 ----ELGKLNSLTKLI  496 (518)
Q Consensus       485 ----~l~~l~~L~~L~  496 (518)
                          .+..+|+|++||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                245788898875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.2e-08  Score=81.24  Aligned_cols=83  Identities=25%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             hhcCCCCcEEEcccCccccc--cChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccc-------
Q 037558          390 VRNCTSLIRVHLNGNNLTGN--ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPR-------  460 (518)
Q Consensus       390 ~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-------  460 (518)
                      ...+++|++|++++|+|+..  ++..+..+++|+.|++++|.+....+-.......|++|++++|++.+....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34577777777777777754  234566777888888888887754332333445678888888887654332       


Q ss_pred             cccCCCCCCEEe
Q 037558          461 EIGNSSQLQALD  472 (518)
Q Consensus       461 ~~~~l~~L~~L~  472 (518)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=1.7e-06  Score=72.18  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=45.3

Q ss_pred             hhhCCCCCCEEecccCcccccc----CccccCCCCCCEEEccCCccccC----ccccccCCCCCCEEeCcCCcCccc---
Q 037558          413 ALAIYPNLTFIDLSRNNFYGEI----SSNWGKCPKLDTLNVSMNNITGG----IPREIGNSSQLQALDLSLNHIVGE---  481 (518)
Q Consensus       413 ~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  481 (518)
                      .+...++|++|+|++|.+....    ...+...+.|++|++++|.+.+.    +...+...++|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            3444455555555555554221    12233445566666666655532    223344556666666666543321   


Q ss_pred             ----CCccccCCCCCCEEECcCCcc
Q 037558          482 ----IPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       482 ----~~~~l~~l~~L~~L~l~~n~~  502 (518)
                          +...+...++|+.|+++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                233344456677777665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=6.1e-06  Score=68.62  Aligned_cols=110  Identities=10%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             CCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----cC
Q 037558          369 GGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----IS  435 (518)
Q Consensus       369 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~  435 (518)
                      .+.|+.|+|+++ .+...    +...+...+.|++|+|++|.+...    +...+...+.|++|+|++|.+...    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666553 23221    223445567777777777777633    234455667788888888877643    23


Q ss_pred             ccccCCCCCCEEEccCCcccc-------CccccccCCCCCCEEeCcCCcC
Q 037558          436 SNWGKCPKLDTLNVSMNNITG-------GIPREIGNSSQLQALDLSLNHI  478 (518)
Q Consensus       436 ~~~~~~~~L~~L~ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l  478 (518)
                      ..+...++|++|++++|.+..       .+...+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            345667788888888775442       1344555678888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.7e-05  Score=65.81  Aligned_cols=111  Identities=23%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             cCCCCcEEEccc-Cccccc----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccC----c
Q 037558          392 NCTSLIRVHLNG-NNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGG----I  458 (518)
Q Consensus       392 ~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~----~  458 (518)
                      +.+.|++|++++ +.++..    +..++...++|++|++++|.+...    +...+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345555555554 234322    223344555666666666655432    122334455666666666665432    2


Q ss_pred             cccccCCCCCCEEeC--cCCcCcc----cCCccccCCCCCCEEECcCCcc
Q 037558          459 PREIGNSSQLQALDL--SLNHIVG----EIPKELGKLNSLTKLILRGNQR  502 (518)
Q Consensus       459 ~~~~~~l~~L~~L~L--~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~  502 (518)
                      ...+...++|+.++|  ++|++..    .+...+...+.|+.|+++.++.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            234455666665444  3445543    2333444567777777766654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=7e-05  Score=61.90  Aligned_cols=111  Identities=12%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             CCCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----c
Q 037558          368 QGGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----I  434 (518)
Q Consensus       368 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  434 (518)
                      +.+.|+.++++++ .++..    +-..+...++|++|++++|.++..    +...+...++++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666653 34321    223344667788888888877644    234455667888888888877543    2


Q ss_pred             CccccCCCCCCEEEc--cCCcccc----CccccccCCCCCCEEeCcCCcC
Q 037558          435 SSNWGKCPKLDTLNV--SMNNITG----GIPREIGNSSQLQALDLSLNHI  478 (518)
Q Consensus       435 ~~~~~~~~~L~~L~l--s~n~l~~----~~~~~~~~l~~L~~L~L~~n~l  478 (518)
                      ...+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            345566778887555  4555643    3444556778888888877654